Mercurial > hg > orthanc
annotate OrthancServer/Sources/Database/SQLiteDatabaseWrapper.cpp @ 5185:0ea402b4d901
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author | Sebastien Jodogne <s.jodogne@gmail.com> |
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date | Sat, 25 Mar 2023 12:27:21 +0100 |
parents | cc1a8b3ff319 |
children | 1a878922404b |
rev | line source |
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183 | 1 /** |
2 * Orthanc - A Lightweight, RESTful DICOM Store | |
1900 | 3 * Copyright (C) 2012-2016 Sebastien Jodogne, Medical Physics |
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4 * Department, University Hospital of Liege, Belgium |
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5 * Copyright (C) 2017-2023 Osimis S.A., Belgium |
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6 * Copyright (C) 2021-2023 Sebastien Jodogne, ICTEAM UCLouvain, Belgium |
183 | 7 * |
8 * This program is free software: you can redistribute it and/or | |
9 * modify it under the terms of the GNU General Public License as | |
10 * published by the Free Software Foundation, either version 3 of the | |
11 * License, or (at your option) any later version. | |
12 * | |
13 * This program is distributed in the hope that it will be useful, but | |
14 * WITHOUT ANY WARRANTY; without even the implied warranty of | |
15 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU | |
16 * General Public License for more details. | |
17 * | |
18 * You should have received a copy of the GNU General Public License | |
19 * along with this program. If not, see <http://www.gnu.org/licenses/>. | |
20 **/ | |
21 | |
22 | |
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23 #include "../PrecompiledHeadersServer.h" |
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24 #include "SQLiteDatabaseWrapper.h" |
183 | 25 |
4045 | 26 #include "../../../OrthancFramework/Sources/DicomFormat/DicomArray.h" |
27 #include "../../../OrthancFramework/Sources/Logging.h" | |
28 #include "../../../OrthancFramework/Sources/SQLite/Transaction.h" | |
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29 #include "../Search/ISqlLookupFormatter.h" |
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30 #include "../ServerToolbox.h" |
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31 #include "Compatibility/ICreateInstance.h" |
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32 #include "Compatibility/IGetChildrenMetadata.h" |
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33 #include "Compatibility/ILookupResourceAndParent.h" |
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34 #include "Compatibility/ISetResourcesContent.h" |
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35 #include "VoidDatabaseListener.h" |
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36 |
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37 #include <OrthancServerResources.h> |
183 | 38 |
39 #include <stdio.h> | |
1247 | 40 #include <boost/lexical_cast.hpp> |
183 | 41 |
42 namespace Orthanc | |
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43 { |
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44 class SQLiteDatabaseWrapper::LookupFormatter : public ISqlLookupFormatter |
183 | 45 { |
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46 private: |
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47 std::list<std::string> values_; |
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48 |
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49 public: |
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50 virtual std::string GenerateParameter(const std::string& value) ORTHANC_OVERRIDE |
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51 { |
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52 values_.push_back(value); |
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53 return "?"; |
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54 } |
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55 |
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56 virtual std::string FormatResourceType(ResourceType level) ORTHANC_OVERRIDE |
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57 { |
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58 return boost::lexical_cast<std::string>(level); |
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59 } |
183 | 60 |
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61 virtual std::string FormatWildcardEscape() ORTHANC_OVERRIDE |
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62 { |
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63 return "ESCAPE '\\'"; |
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64 } |
1158 | 65 |
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66 virtual bool IsEscapeBrackets() const ORTHANC_OVERRIDE |
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67 { |
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68 return false; |
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69 } |
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70 |
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71 void Bind(SQLite::Statement& statement) const |
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72 { |
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73 size_t pos = 0; |
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74 |
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75 for (std::list<std::string>::const_iterator |
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76 it = values_.begin(); it != values_.end(); ++it, pos++) |
1158 | 77 { |
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78 statement.BindString(pos, *it); |
1158 | 79 } |
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80 } |
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81 }; |
1158 | 82 |
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83 |
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84 class SQLiteDatabaseWrapper::SignalRemainingAncestor : public SQLite::IScalarFunction |
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85 { |
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86 private: |
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87 bool hasRemainingAncestor_; |
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88 std::string remainingPublicId_; |
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89 ResourceType remainingType_; |
660 | 90 |
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91 public: |
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92 SignalRemainingAncestor() : |
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93 hasRemainingAncestor_(false) |
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94 { |
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95 } |
183 | 96 |
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97 void Reset() |
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98 { |
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99 hasRemainingAncestor_ = false; |
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100 } |
183 | 101 |
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102 virtual const char* GetName() const ORTHANC_OVERRIDE |
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103 { |
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104 return "SignalRemainingAncestor"; |
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105 } |
183 | 106 |
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107 virtual unsigned int GetCardinality() const ORTHANC_OVERRIDE |
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108 { |
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109 return 2; |
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110 } |
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111 |
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112 virtual void Compute(SQLite::FunctionContext& context) ORTHANC_OVERRIDE |
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113 { |
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114 CLOG(TRACE, SQLITE) << "There exists a remaining ancestor with public ID \"" |
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115 << context.GetStringValue(0) << "\" of type " |
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116 << context.GetIntValue(1); |
183 | 117 |
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118 if (!hasRemainingAncestor_ || |
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119 remainingType_ >= context.GetIntValue(1)) |
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120 { |
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121 hasRemainingAncestor_ = true; |
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122 remainingPublicId_ = context.GetStringValue(0); |
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123 remainingType_ = static_cast<ResourceType>(context.GetIntValue(1)); |
183 | 124 } |
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125 } |
183 | 126 |
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127 bool HasRemainingAncestor() const |
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128 { |
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129 return hasRemainingAncestor_; |
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130 } |
183 | 131 |
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132 const std::string& GetRemainingAncestorId() const |
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133 { |
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134 assert(hasRemainingAncestor_); |
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135 return remainingPublicId_; |
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136 } |
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137 |
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138 ResourceType GetRemainingAncestorType() const |
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139 { |
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140 assert(hasRemainingAncestor_); |
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141 return remainingType_; |
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142 } |
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143 }; |
183 | 144 |
145 | |
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146 class SQLiteDatabaseWrapper::TransactionBase : |
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147 public SQLiteDatabaseWrapper::UnitTestsTransaction, |
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148 public Compatibility::ICreateInstance, |
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149 public Compatibility::IGetChildrenMetadata, |
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150 public Compatibility::ILookupResourceAndParent, |
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151 public Compatibility::ISetResourcesContent |
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152 { |
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153 private: |
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154 void AnswerLookup(std::list<std::string>& resourcesId, |
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155 std::list<std::string>& instancesId, |
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156 ResourceType level) |
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157 { |
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158 resourcesId.clear(); |
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159 instancesId.clear(); |
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160 |
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161 std::unique_ptr<SQLite::Statement> statement; |
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162 |
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163 switch (level) |
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164 { |
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165 case ResourceType_Patient: |
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166 { |
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167 statement.reset( |
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168 new SQLite::Statement( |
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169 db_, SQLITE_FROM_HERE, |
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170 "SELECT patients.publicId, instances.publicID FROM Lookup AS patients " |
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171 "INNER JOIN Resources studies ON patients.internalId=studies.parentId " |
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172 "INNER JOIN Resources series ON studies.internalId=series.parentId " |
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173 "INNER JOIN Resources instances ON series.internalId=instances.parentId " |
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174 "GROUP BY patients.publicId")); |
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175 |
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176 break; |
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177 } |
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178 |
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179 case ResourceType_Study: |
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180 { |
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181 statement.reset( |
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182 new SQLite::Statement( |
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183 db_, SQLITE_FROM_HERE, |
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184 "SELECT studies.publicId, instances.publicID FROM Lookup AS studies " |
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185 "INNER JOIN Resources series ON studies.internalId=series.parentId " |
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186 "INNER JOIN Resources instances ON series.internalId=instances.parentId " |
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187 "GROUP BY studies.publicId")); |
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188 |
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189 break; |
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190 } |
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191 |
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192 case ResourceType_Series: |
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193 { |
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194 statement.reset( |
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195 new SQLite::Statement( |
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196 db_, SQLITE_FROM_HERE, |
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197 "SELECT series.publicId, instances.publicID FROM Lookup AS series " |
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198 "INNER JOIN Resources instances ON series.internalId=instances.parentId " |
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199 "GROUP BY series.publicId")); |
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200 |
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201 break; |
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202 } |
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203 |
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204 case ResourceType_Instance: |
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205 { |
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206 statement.reset( |
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207 new SQLite::Statement( |
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208 db_, SQLITE_FROM_HERE, "SELECT publicId, publicId FROM Lookup")); |
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209 |
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210 break; |
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211 } |
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212 |
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213 default: |
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214 throw OrthancException(ErrorCode_InternalError); |
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215 } |
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216 |
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217 assert(statement.get() != NULL); |
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218 |
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219 while (statement->Step()) |
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220 { |
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221 resourcesId.push_back(statement->ColumnString(0)); |
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222 instancesId.push_back(statement->ColumnString(1)); |
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223 } |
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224 } |
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225 |
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226 |
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227 void ClearTable(const std::string& tableName) |
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228 { |
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229 db_.Execute("DELETE FROM " + tableName); |
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230 } |
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231 |
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232 |
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233 void GetChangesInternal(std::list<ServerIndexChange>& target, |
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234 bool& done, |
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235 SQLite::Statement& s, |
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236 uint32_t maxResults) |
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237 { |
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238 target.clear(); |
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239 |
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240 while (target.size() < maxResults && s.Step()) |
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241 { |
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242 int64_t seq = s.ColumnInt64(0); |
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243 ChangeType changeType = static_cast<ChangeType>(s.ColumnInt(1)); |
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244 ResourceType resourceType = static_cast<ResourceType>(s.ColumnInt(3)); |
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245 const std::string& date = s.ColumnString(4); |
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246 |
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247 int64_t internalId = s.ColumnInt64(2); |
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248 std::string publicId = GetPublicId(internalId); |
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249 |
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250 target.push_back(ServerIndexChange(seq, changeType, resourceType, publicId, date)); |
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251 } |
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252 |
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253 done = !(target.size() == maxResults && s.Step()); |
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254 } |
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255 |
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256 |
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257 void GetExportedResourcesInternal(std::list<ExportedResource>& target, |
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258 bool& done, |
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259 SQLite::Statement& s, |
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260 uint32_t maxResults) |
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261 { |
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262 target.clear(); |
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263 |
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264 while (target.size() < maxResults && s.Step()) |
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265 { |
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266 int64_t seq = s.ColumnInt64(0); |
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267 ResourceType resourceType = static_cast<ResourceType>(s.ColumnInt(1)); |
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268 std::string publicId = s.ColumnString(2); |
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269 |
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270 ExportedResource resource(seq, |
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271 resourceType, |
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272 publicId, |
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273 s.ColumnString(3), // modality |
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274 s.ColumnString(8), // date |
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275 s.ColumnString(4), // patient ID |
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276 s.ColumnString(5), // study instance UID |
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277 s.ColumnString(6), // series instance UID |
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278 s.ColumnString(7)); // sop instance UID |
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279 |
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280 target.push_back(resource); |
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281 } |
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282 |
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283 done = !(target.size() == maxResults && s.Step()); |
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284 } |
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285 |
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286 |
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287 void GetChildren(std::list<std::string>& childrenPublicIds, |
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288 int64_t id) |
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289 { |
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290 SQLite::Statement s(db_, SQLITE_FROM_HERE, "SELECT publicId FROM Resources WHERE parentId=?"); |
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291 s.BindInt64(0, id); |
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292 |
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293 childrenPublicIds.clear(); |
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294 while (s.Step()) |
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295 { |
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296 childrenPublicIds.push_back(s.ColumnString(0)); |
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297 } |
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298 } |
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299 |
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300 boost::mutex::scoped_lock lock_; |
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301 IDatabaseListener& listener_; |
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302 SignalRemainingAncestor& signalRemainingAncestor_; |
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303 |
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304 public: |
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305 TransactionBase(boost::mutex& mutex, |
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306 SQLite::Connection& db, |
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307 IDatabaseListener& listener, |
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308 SignalRemainingAncestor& signalRemainingAncestor) : |
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309 UnitTestsTransaction(db), |
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310 lock_(mutex), |
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311 listener_(listener), |
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312 signalRemainingAncestor_(signalRemainingAncestor) |
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313 { |
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314 } |
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315 |
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316 IDatabaseListener& GetListener() const |
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317 { |
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318 return listener_; |
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319 } |
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320 |
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321 |
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322 virtual void AddAttachment(int64_t id, |
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323 const FileInfo& attachment, |
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324 int64_t revision) ORTHANC_OVERRIDE |
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325 { |
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326 // TODO - REVISIONS |
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327 SQLite::Statement s(db_, SQLITE_FROM_HERE, "INSERT INTO AttachedFiles (id, fileType, uuid, compressedSize, uncompressedSize, compressionType, uncompressedMD5, compressedMD5) VALUES(?, ?, ?, ?, ?, ?, ?, ?)"); |
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328 s.BindInt64(0, id); |
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329 s.BindInt(1, attachment.GetContentType()); |
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330 s.BindString(2, attachment.GetUuid()); |
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331 s.BindInt64(3, attachment.GetCompressedSize()); |
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332 s.BindInt64(4, attachment.GetUncompressedSize()); |
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333 s.BindInt(5, attachment.GetCompressionType()); |
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334 s.BindString(6, attachment.GetUncompressedMD5()); |
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335 s.BindString(7, attachment.GetCompressedMD5()); |
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336 s.Run(); |
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337 } |
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338 |
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339 |
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340 virtual void ApplyLookupResources(std::list<std::string>& resourcesId, |
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341 std::list<std::string>* instancesId, |
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342 const std::vector<DatabaseConstraint>& lookup, |
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343 ResourceType queryLevel, |
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344 size_t limit) ORTHANC_OVERRIDE |
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345 { |
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346 LookupFormatter formatter; |
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347 |
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348 std::string sql; |
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349 LookupFormatter::Apply(sql, formatter, lookup, queryLevel, limit); |
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350 |
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351 sql = "CREATE TEMPORARY TABLE Lookup AS " + sql; |
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352 |
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353 { |
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354 SQLite::Statement s(db_, SQLITE_FROM_HERE, "DROP TABLE IF EXISTS Lookup"); |
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355 s.Run(); |
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356 } |
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357 |
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358 { |
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359 SQLite::Statement statement(db_, sql); |
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360 formatter.Bind(statement); |
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361 statement.Run(); |
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362 } |
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363 |
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364 if (instancesId != NULL) |
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365 { |
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366 AnswerLookup(resourcesId, *instancesId, queryLevel); |
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367 } |
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368 else |
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369 { |
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370 resourcesId.clear(); |
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371 |
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372 SQLite::Statement s(db_, SQLITE_FROM_HERE, "SELECT publicId FROM Lookup"); |
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373 |
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374 while (s.Step()) |
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375 { |
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376 resourcesId.push_back(s.ColumnString(0)); |
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377 } |
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378 } |
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379 } |
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380 |
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381 |
4592 | 382 // From the "ICreateInstance" interface |
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383 virtual void AttachChild(int64_t parent, |
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384 int64_t child) ORTHANC_OVERRIDE |
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385 { |
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386 SQLite::Statement s(db_, SQLITE_FROM_HERE, "UPDATE Resources SET parentId = ? WHERE internalId = ?"); |
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387 s.BindInt64(0, parent); |
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388 s.BindInt64(1, child); |
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389 s.Run(); |
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390 } |
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391 |
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392 |
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393 virtual void ClearChanges() ORTHANC_OVERRIDE |
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394 { |
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395 ClearTable("Changes"); |
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396 } |
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397 |
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398 virtual void ClearExportedResources() ORTHANC_OVERRIDE |
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399 { |
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400 ClearTable("ExportedResources"); |
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401 } |
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402 |
1241 | 403 |
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404 virtual void ClearMainDicomTags(int64_t id) ORTHANC_OVERRIDE |
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405 { |
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406 { |
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407 SQLite::Statement s(db_, SQLITE_FROM_HERE, "DELETE FROM DicomIdentifiers WHERE id=?"); |
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408 s.BindInt64(0, id); |
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409 s.Run(); |
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410 } |
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411 |
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412 { |
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413 SQLite::Statement s(db_, SQLITE_FROM_HERE, "DELETE FROM MainDicomTags WHERE id=?"); |
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414 s.BindInt64(0, id); |
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415 s.Run(); |
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416 } |
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417 } |
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418 |
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419 |
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420 virtual bool CreateInstance(CreateInstanceResult& result, |
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421 int64_t& instanceId, |
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422 const std::string& patient, |
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423 const std::string& study, |
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424 const std::string& series, |
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425 const std::string& instance) ORTHANC_OVERRIDE |
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426 { |
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427 return ICreateInstance::Apply |
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428 (*this, result, instanceId, patient, study, series, instance); |
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429 } |
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430 |
193
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431 |
4592 | 432 // From the "ICreateInstance" interface |
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433 virtual int64_t CreateResource(const std::string& publicId, |
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434 ResourceType type) ORTHANC_OVERRIDE |
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435 { |
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436 SQLite::Statement s(db_, SQLITE_FROM_HERE, "INSERT INTO Resources (internalId, resourceType, publicId, parentId) VALUES(NULL, ?, ?, NULL)"); |
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437 s.BindInt(0, type); |
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438 s.BindString(1, publicId); |
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439 s.Run(); |
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440 return db_.GetLastInsertRowId(); |
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441 } |
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442 |
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443 |
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444 virtual void DeleteAttachment(int64_t id, |
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445 FileContentType attachment) ORTHANC_OVERRIDE |
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446 { |
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447 SQLite::Statement s(db_, SQLITE_FROM_HERE, "DELETE FROM AttachedFiles WHERE id=? AND fileType=?"); |
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448 s.BindInt64(0, id); |
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449 s.BindInt(1, attachment); |
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450 s.Run(); |
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451 } |
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452 |
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453 |
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454 virtual void DeleteMetadata(int64_t id, |
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455 MetadataType type) ORTHANC_OVERRIDE |
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456 { |
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457 SQLite::Statement s(db_, SQLITE_FROM_HERE, "DELETE FROM Metadata WHERE id=? and type=?"); |
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458 s.BindInt64(0, id); |
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459 s.BindInt(1, type); |
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460 s.Run(); |
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461 } |
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462 |
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|
463 |
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464 virtual void DeleteResource(int64_t id) ORTHANC_OVERRIDE |
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465 { |
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466 signalRemainingAncestor_.Reset(); |
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467 |
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468 SQLite::Statement s(db_, SQLITE_FROM_HERE, "DELETE FROM Resources WHERE internalId=?"); |
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469 s.BindInt64(0, id); |
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470 s.Run(); |
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471 |
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472 if (signalRemainingAncestor_.HasRemainingAncestor()) |
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473 { |
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474 listener_.SignalRemainingAncestor(signalRemainingAncestor_.GetRemainingAncestorType(), |
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475 signalRemainingAncestor_.GetRemainingAncestorId()); |
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476 } |
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477 } |
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478 |
183 | 479 |
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480 virtual void GetAllMetadata(std::map<MetadataType, std::string>& target, |
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481 int64_t id) ORTHANC_OVERRIDE |
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482 { |
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483 target.clear(); |
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484 |
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485 SQLite::Statement s(db_, SQLITE_FROM_HERE, "SELECT type, value FROM Metadata WHERE id=?"); |
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486 s.BindInt64(0, id); |
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487 |
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488 while (s.Step()) |
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489 { |
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490 MetadataType key = static_cast<MetadataType>(s.ColumnInt(0)); |
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491 target[key] = s.ColumnString(1); |
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492 } |
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493 } |
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494 |
183 | 495 |
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496 virtual void GetAllPublicIds(std::list<std::string>& target, |
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497 ResourceType resourceType) ORTHANC_OVERRIDE |
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498 { |
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499 SQLite::Statement s(db_, SQLITE_FROM_HERE, "SELECT publicId FROM Resources WHERE resourceType=?"); |
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500 s.BindInt(0, resourceType); |
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501 |
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502 target.clear(); |
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503 while (s.Step()) |
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504 { |
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505 target.push_back(s.ColumnString(0)); |
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506 } |
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507 } |
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508 |
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509 |
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510 virtual void GetAllPublicIds(std::list<std::string>& target, |
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511 ResourceType resourceType, |
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512 size_t since, |
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513 size_t limit) ORTHANC_OVERRIDE |
183 | 514 { |
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515 if (limit == 0) |
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516 { |
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517 target.clear(); |
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518 return; |
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519 } |
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520 |
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521 SQLite::Statement s(db_, SQLITE_FROM_HERE, |
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522 "SELECT publicId FROM Resources WHERE " |
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523 "resourceType=? LIMIT ? OFFSET ?"); |
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524 s.BindInt(0, resourceType); |
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525 s.BindInt64(1, limit); |
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526 s.BindInt64(2, since); |
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527 |
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528 target.clear(); |
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529 while (s.Step()) |
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530 { |
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531 target.push_back(s.ColumnString(0)); |
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532 } |
183 | 533 } |
534 | |
535 | |
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536 virtual void GetChanges(std::list<ServerIndexChange>& target /*out*/, |
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537 bool& done /*out*/, |
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538 int64_t since, |
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539 uint32_t maxResults) ORTHANC_OVERRIDE |
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540 { |
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541 SQLite::Statement s(db_, SQLITE_FROM_HERE, "SELECT * FROM Changes WHERE seq>? ORDER BY seq LIMIT ?"); |
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542 s.BindInt64(0, since); |
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543 s.BindInt(1, maxResults + 1); |
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544 GetChangesInternal(target, done, s, maxResults); |
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545 } |
183 | 546 |
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547 |
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548 virtual void GetChildrenMetadata(std::list<std::string>& target, |
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549 int64_t resourceId, |
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550 MetadataType metadata) ORTHANC_OVERRIDE |
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551 { |
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552 IGetChildrenMetadata::Apply(*this, target, resourceId, metadata); |
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553 } |
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554 |
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555 |
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556 virtual void GetChildrenInternalId(std::list<int64_t>& target, |
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557 int64_t id) ORTHANC_OVERRIDE |
183 | 558 { |
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559 SQLite::Statement s(db_, SQLITE_FROM_HERE, "SELECT a.internalId FROM Resources AS a, Resources AS b " |
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560 "WHERE a.parentId = b.internalId AND b.internalId = ?"); |
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561 s.BindInt64(0, id); |
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562 |
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563 target.clear(); |
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564 |
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565 while (s.Step()) |
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566 { |
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567 target.push_back(s.ColumnInt64(0)); |
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568 } |
183 | 569 } |
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570 |
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571 |
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572 virtual void GetChildrenPublicId(std::list<std::string>& target, |
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573 int64_t id) ORTHANC_OVERRIDE |
183 | 574 { |
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575 SQLite::Statement s(db_, SQLITE_FROM_HERE, "SELECT a.publicId FROM Resources AS a, Resources AS b " |
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576 "WHERE a.parentId = b.internalId AND b.internalId = ?"); |
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577 s.BindInt64(0, id); |
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578 |
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579 target.clear(); |
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580 |
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581 while (s.Step()) |
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582 { |
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583 target.push_back(s.ColumnString(0)); |
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584 } |
183 | 585 } |
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586 |
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587 |
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588 virtual void GetExportedResources(std::list<ExportedResource>& target, |
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589 bool& done, |
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590 int64_t since, |
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591 uint32_t maxResults) ORTHANC_OVERRIDE |
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592 { |
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593 SQLite::Statement s(db_, SQLITE_FROM_HERE, |
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594 "SELECT * FROM ExportedResources WHERE seq>? ORDER BY seq LIMIT ?"); |
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595 s.BindInt64(0, since); |
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596 s.BindInt(1, maxResults + 1); |
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597 GetExportedResourcesInternal(target, done, s, maxResults); |
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598 } |
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599 |
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600 |
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601 virtual void GetLastChange(std::list<ServerIndexChange>& target /*out*/) ORTHANC_OVERRIDE |
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602 { |
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603 bool done; // Ignored |
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604 SQLite::Statement s(db_, SQLITE_FROM_HERE, "SELECT * FROM Changes ORDER BY seq DESC LIMIT 1"); |
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605 GetChangesInternal(target, done, s, 1); |
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606 } |
183 | 607 |
608 | |
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609 int64_t GetLastChangeIndex() ORTHANC_OVERRIDE |
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610 { |
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611 SQLite::Statement s(db_, SQLITE_FROM_HERE, |
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612 "SELECT seq FROM sqlite_sequence WHERE name='Changes'"); |
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613 |
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614 if (s.Step()) |
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615 { |
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616 int64_t c = s.ColumnInt(0); |
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617 assert(!s.Step()); |
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618 return c; |
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619 } |
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620 else |
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621 { |
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622 // No change has been recorded so far in the database |
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623 return 0; |
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624 } |
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625 } |
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626 |
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627 |
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628 virtual void GetLastExportedResource(std::list<ExportedResource>& target) ORTHANC_OVERRIDE |
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629 { |
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630 bool done; // Ignored |
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631 SQLite::Statement s(db_, SQLITE_FROM_HERE, |
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632 "SELECT * FROM ExportedResources ORDER BY seq DESC LIMIT 1"); |
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633 GetExportedResourcesInternal(target, done, s, 1); |
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634 } |
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635 |
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636 |
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637 virtual void GetMainDicomTags(DicomMap& map, |
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638 int64_t id) ORTHANC_OVERRIDE |
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639 { |
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640 map.Clear(); |
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641 |
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642 SQLite::Statement s(db_, SQLITE_FROM_HERE, "SELECT * FROM MainDicomTags WHERE id=?"); |
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643 s.BindInt64(0, id); |
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644 while (s.Step()) |
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645 { |
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646 map.SetValue(s.ColumnInt(1), |
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647 s.ColumnInt(2), |
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648 s.ColumnString(3), false); |
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649 } |
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650 } |
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651 |
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652 |
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653 virtual std::string GetPublicId(int64_t resourceId) ORTHANC_OVERRIDE |
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654 { |
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655 SQLite::Statement s(db_, SQLITE_FROM_HERE, |
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656 "SELECT publicId FROM Resources WHERE internalId=?"); |
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657 s.BindInt64(0, resourceId); |
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658 |
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659 if (s.Step()) |
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660 { |
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661 return s.ColumnString(0); |
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662 } |
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663 else |
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664 { |
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665 throw OrthancException(ErrorCode_UnknownResource); |
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666 } |
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667 } |
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668 |
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669 |
4595
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670 virtual uint64_t GetResourcesCount(ResourceType resourceType) ORTHANC_OVERRIDE |
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671 { |
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672 SQLite::Statement s(db_, SQLITE_FROM_HERE, |
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673 "SELECT COUNT(*) FROM Resources WHERE resourceType=?"); |
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674 s.BindInt(0, resourceType); |
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675 |
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676 if (!s.Step()) |
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677 { |
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678 return 0; |
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679 } |
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680 else |
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681 { |
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682 int64_t c = s.ColumnInt(0); |
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683 assert(!s.Step()); |
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684 return c; |
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685 } |
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686 } |
183 | 687 |
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688 |
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689 virtual ResourceType GetResourceType(int64_t resourceId) ORTHANC_OVERRIDE |
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690 { |
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691 SQLite::Statement s(db_, SQLITE_FROM_HERE, |
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692 "SELECT resourceType FROM Resources WHERE internalId=?"); |
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693 s.BindInt64(0, resourceId); |
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|
694 |
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695 if (s.Step()) |
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696 { |
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697 return static_cast<ResourceType>(s.ColumnInt(0)); |
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698 } |
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699 else |
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700 { |
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701 throw OrthancException(ErrorCode_UnknownResource); |
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702 } |
3809
2bf30ef727e3
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|
703 } |
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704 |
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705 |
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706 virtual uint64_t GetTotalCompressedSize() ORTHANC_OVERRIDE |
218 | 707 { |
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708 // Old SQL query that was used in Orthanc <= 1.5.0: |
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709 // SQLite::Statement s(db_, SQLITE_FROM_HERE, "SELECT SUM(compressedSize) FROM AttachedFiles"); |
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710 |
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711 SQLite::Statement s(db_, SQLITE_FROM_HERE, "SELECT value FROM GlobalIntegers WHERE key=0"); |
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712 s.Run(); |
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713 return static_cast<uint64_t>(s.ColumnInt64(0)); |
218 | 714 } |
183 | 715 |
716 | |
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717 virtual uint64_t GetTotalUncompressedSize() ORTHANC_OVERRIDE |
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718 { |
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719 // Old SQL query that was used in Orthanc <= 1.5.0: |
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720 // SQLite::Statement s(db_, SQLITE_FROM_HERE, "SELECT SUM(uncompressedSize) FROM AttachedFiles"); |
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721 |
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722 SQLite::Statement s(db_, SQLITE_FROM_HERE, "SELECT value FROM GlobalIntegers WHERE key=1"); |
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723 s.Run(); |
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724 return static_cast<uint64_t>(s.ColumnInt64(0)); |
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725 } |
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726 |
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727 |
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728 virtual bool IsDiskSizeAbove(uint64_t threshold) ORTHANC_OVERRIDE |
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729 { |
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730 return GetTotalCompressedSize() > threshold; |
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731 } |
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732 |
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733 |
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734 virtual bool IsExistingResource(int64_t internalId) ORTHANC_OVERRIDE |
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735 { |
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736 SQLite::Statement s(db_, SQLITE_FROM_HERE, |
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737 "SELECT * FROM Resources WHERE internalId=?"); |
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738 s.BindInt64(0, internalId); |
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739 return s.Step(); |
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740 } |
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741 |
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742 |
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743 virtual bool IsProtectedPatient(int64_t internalId) ORTHANC_OVERRIDE |
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744 { |
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745 SQLite::Statement s(db_, SQLITE_FROM_HERE, |
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746 "SELECT * FROM PatientRecyclingOrder WHERE patientId = ?"); |
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747 s.BindInt64(0, internalId); |
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748 return !s.Step(); |
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749 } |
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750 |
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751 |
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752 virtual void ListAvailableAttachments(std::set<FileContentType>& target, |
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753 int64_t id) ORTHANC_OVERRIDE |
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754 { |
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755 target.clear(); |
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|
756 |
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757 SQLite::Statement s(db_, SQLITE_FROM_HERE, |
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|
758 "SELECT fileType FROM AttachedFiles WHERE id=?"); |
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|
759 s.BindInt64(0, id); |
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|
760 |
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761 while (s.Step()) |
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762 { |
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763 target.insert(static_cast<FileContentType>(s.ColumnInt(0))); |
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764 } |
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765 } |
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766 |
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767 |
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768 virtual void LogChange(int64_t internalId, |
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769 const ServerIndexChange& change) ORTHANC_OVERRIDE |
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770 { |
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|
771 SQLite::Statement s(db_, SQLITE_FROM_HERE, "INSERT INTO Changes (seq, changeType, internalId, resourceType, date) VALUES(NULL, ?, ?, ?, ?)"); |
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772 s.BindInt(0, change.GetChangeType()); |
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773 s.BindInt64(1, internalId); |
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774 s.BindInt(2, change.GetResourceType()); |
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775 s.BindString(3, change.GetDate()); |
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776 s.Run(); |
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777 } |
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778 |
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|
779 |
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780 virtual void LogExportedResource(const ExportedResource& resource) ORTHANC_OVERRIDE |
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781 { |
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782 SQLite::Statement s(db_, SQLITE_FROM_HERE, |
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|
783 "INSERT INTO ExportedResources (seq, resourceType, publicId, remoteModality, patientId, studyInstanceUid, seriesInstanceUid, sopInstanceUid, date) VALUES(NULL, ?, ?, ?, ?, ?, ?, ?, ?)"); |
4591
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784 |
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785 s.BindInt(0, resource.GetResourceType()); |
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|
786 s.BindString(1, resource.GetPublicId()); |
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|
787 s.BindString(2, resource.GetModality()); |
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|
788 s.BindString(3, resource.GetPatientId()); |
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|
789 s.BindString(4, resource.GetStudyInstanceUid()); |
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|
790 s.BindString(5, resource.GetSeriesInstanceUid()); |
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|
791 s.BindString(6, resource.GetSopInstanceUid()); |
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|
792 s.BindString(7, resource.GetDate()); |
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793 s.Run(); |
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794 } |
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795 |
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|
796 |
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|
797 virtual bool LookupAttachment(FileInfo& attachment, |
4627
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798 int64_t& revision, |
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799 int64_t id, |
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800 FileContentType contentType) ORTHANC_OVERRIDE |
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|
801 { |
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|
802 SQLite::Statement s(db_, SQLITE_FROM_HERE, |
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4589
diff
changeset
|
803 "SELECT uuid, uncompressedSize, compressionType, compressedSize, " |
ff8170d17d90
moving all accesses to databases from IDatabaseWrapper to ITransaction
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4589
diff
changeset
|
804 "uncompressedMD5, compressedMD5 FROM AttachedFiles WHERE id=? AND fileType=?"); |
ff8170d17d90
moving all accesses to databases from IDatabaseWrapper to ITransaction
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4589
diff
changeset
|
805 s.BindInt64(0, id); |
ff8170d17d90
moving all accesses to databases from IDatabaseWrapper to ITransaction
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4589
diff
changeset
|
806 s.BindInt(1, contentType); |
ff8170d17d90
moving all accesses to databases from IDatabaseWrapper to ITransaction
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4589
diff
changeset
|
807 |
ff8170d17d90
moving all accesses to databases from IDatabaseWrapper to ITransaction
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
808 if (!s.Step()) |
ff8170d17d90
moving all accesses to databases from IDatabaseWrapper to ITransaction
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
809 { |
ff8170d17d90
moving all accesses to databases from IDatabaseWrapper to ITransaction
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4589
diff
changeset
|
810 return false; |
ff8170d17d90
moving all accesses to databases from IDatabaseWrapper to ITransaction
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4589
diff
changeset
|
811 } |
ff8170d17d90
moving all accesses to databases from IDatabaseWrapper to ITransaction
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
812 else |
ff8170d17d90
moving all accesses to databases from IDatabaseWrapper to ITransaction
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4589
diff
changeset
|
813 { |
ff8170d17d90
moving all accesses to databases from IDatabaseWrapper to ITransaction
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
814 attachment = FileInfo(s.ColumnString(0), |
ff8170d17d90
moving all accesses to databases from IDatabaseWrapper to ITransaction
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
815 contentType, |
ff8170d17d90
moving all accesses to databases from IDatabaseWrapper to ITransaction
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
816 s.ColumnInt64(1), |
ff8170d17d90
moving all accesses to databases from IDatabaseWrapper to ITransaction
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
817 s.ColumnString(4), |
ff8170d17d90
moving all accesses to databases from IDatabaseWrapper to ITransaction
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
818 static_cast<CompressionType>(s.ColumnInt(2)), |
ff8170d17d90
moving all accesses to databases from IDatabaseWrapper to ITransaction
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
819 s.ColumnInt64(3), |
ff8170d17d90
moving all accesses to databases from IDatabaseWrapper to ITransaction
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4589
diff
changeset
|
820 s.ColumnString(5)); |
4627
f7d5372b59b3
handling revisions of attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4623
diff
changeset
|
821 revision = 0; // TODO - REVISIONS |
4591
ff8170d17d90
moving all accesses to databases from IDatabaseWrapper to ITransaction
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
822 return true; |
ff8170d17d90
moving all accesses to databases from IDatabaseWrapper to ITransaction
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4589
diff
changeset
|
823 } |
ff8170d17d90
moving all accesses to databases from IDatabaseWrapper to ITransaction
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
824 } |
ff8170d17d90
moving all accesses to databases from IDatabaseWrapper to ITransaction
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
825 |
ff8170d17d90
moving all accesses to databases from IDatabaseWrapper to ITransaction
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4589
diff
changeset
|
826 |
ff8170d17d90
moving all accesses to databases from IDatabaseWrapper to ITransaction
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
827 virtual bool LookupGlobalProperty(std::string& target, |
4607
f75c63aa9de0
differentiating between shared and private global properties
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
828 GlobalProperty property, |
f75c63aa9de0
differentiating between shared and private global properties
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
829 bool shared) ORTHANC_OVERRIDE |
4591
ff8170d17d90
moving all accesses to databases from IDatabaseWrapper to ITransaction
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4589
diff
changeset
|
830 { |
4607
f75c63aa9de0
differentiating between shared and private global properties
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4595
diff
changeset
|
831 // The "shared" info is not used by the SQLite database, as it |
f75c63aa9de0
differentiating between shared and private global properties
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
832 // can only be used by one Orthanc server. |
f75c63aa9de0
differentiating between shared and private global properties
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
833 |
4591
ff8170d17d90
moving all accesses to databases from IDatabaseWrapper to ITransaction
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4589
diff
changeset
|
834 SQLite::Statement s(db_, SQLITE_FROM_HERE, |
ff8170d17d90
moving all accesses to databases from IDatabaseWrapper to ITransaction
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
835 "SELECT value FROM GlobalProperties WHERE property=?"); |
ff8170d17d90
moving all accesses to databases from IDatabaseWrapper to ITransaction
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parents:
4589
diff
changeset
|
836 s.BindInt(0, property); |
ff8170d17d90
moving all accesses to databases from IDatabaseWrapper to ITransaction
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4589
diff
changeset
|
837 |
ff8170d17d90
moving all accesses to databases from IDatabaseWrapper to ITransaction
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
838 if (!s.Step()) |
ff8170d17d90
moving all accesses to databases from IDatabaseWrapper to ITransaction
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4589
diff
changeset
|
839 { |
ff8170d17d90
moving all accesses to databases from IDatabaseWrapper to ITransaction
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4589
diff
changeset
|
840 return false; |
ff8170d17d90
moving all accesses to databases from IDatabaseWrapper to ITransaction
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4589
diff
changeset
|
841 } |
ff8170d17d90
moving all accesses to databases from IDatabaseWrapper to ITransaction
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4589
diff
changeset
|
842 else |
ff8170d17d90
moving all accesses to databases from IDatabaseWrapper to ITransaction
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4589
diff
changeset
|
843 { |
ff8170d17d90
moving all accesses to databases from IDatabaseWrapper to ITransaction
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4589
diff
changeset
|
844 target = s.ColumnString(0); |
ff8170d17d90
moving all accesses to databases from IDatabaseWrapper to ITransaction
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4589
diff
changeset
|
845 return true; |
ff8170d17d90
moving all accesses to databases from IDatabaseWrapper to ITransaction
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4589
diff
changeset
|
846 } |
ff8170d17d90
moving all accesses to databases from IDatabaseWrapper to ITransaction
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4589
diff
changeset
|
847 } |
ff8170d17d90
moving all accesses to databases from IDatabaseWrapper to ITransaction
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4589
diff
changeset
|
848 |
ff8170d17d90
moving all accesses to databases from IDatabaseWrapper to ITransaction
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4589
diff
changeset
|
849 |
ff8170d17d90
moving all accesses to databases from IDatabaseWrapper to ITransaction
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4589
diff
changeset
|
850 virtual bool LookupMetadata(std::string& target, |
4623
95ffe3b6ef7c
handling of revisions for metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4607
diff
changeset
|
851 int64_t& revision, |
4591
ff8170d17d90
moving all accesses to databases from IDatabaseWrapper to ITransaction
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4589
diff
changeset
|
852 int64_t id, |
ff8170d17d90
moving all accesses to databases from IDatabaseWrapper to ITransaction
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
853 MetadataType type) ORTHANC_OVERRIDE |
ff8170d17d90
moving all accesses to databases from IDatabaseWrapper to ITransaction
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4589
diff
changeset
|
854 { |
ff8170d17d90
moving all accesses to databases from IDatabaseWrapper to ITransaction
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4589
diff
changeset
|
855 SQLite::Statement s(db_, SQLITE_FROM_HERE, |
ff8170d17d90
moving all accesses to databases from IDatabaseWrapper to ITransaction
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4589
diff
changeset
|
856 "SELECT value FROM Metadata WHERE id=? AND type=?"); |
ff8170d17d90
moving all accesses to databases from IDatabaseWrapper to ITransaction
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4589
diff
changeset
|
857 s.BindInt64(0, id); |
ff8170d17d90
moving all accesses to databases from IDatabaseWrapper to ITransaction
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4589
diff
changeset
|
858 s.BindInt(1, type); |
ff8170d17d90
moving all accesses to databases from IDatabaseWrapper to ITransaction
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4589
diff
changeset
|
859 |
ff8170d17d90
moving all accesses to databases from IDatabaseWrapper to ITransaction
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4589
diff
changeset
|
860 if (!s.Step()) |
ff8170d17d90
moving all accesses to databases from IDatabaseWrapper to ITransaction
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4589
diff
changeset
|
861 { |
ff8170d17d90
moving all accesses to databases from IDatabaseWrapper to ITransaction
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4589
diff
changeset
|
862 return false; |
ff8170d17d90
moving all accesses to databases from IDatabaseWrapper to ITransaction
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4589
diff
changeset
|
863 } |
ff8170d17d90
moving all accesses to databases from IDatabaseWrapper to ITransaction
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4589
diff
changeset
|
864 else |
ff8170d17d90
moving all accesses to databases from IDatabaseWrapper to ITransaction
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4589
diff
changeset
|
865 { |
ff8170d17d90
moving all accesses to databases from IDatabaseWrapper to ITransaction
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4589
diff
changeset
|
866 target = s.ColumnString(0); |
4623
95ffe3b6ef7c
handling of revisions for metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4607
diff
changeset
|
867 revision = 0; // TODO - REVISIONS |
4591
ff8170d17d90
moving all accesses to databases from IDatabaseWrapper to ITransaction
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
868 return true; |
ff8170d17d90
moving all accesses to databases from IDatabaseWrapper to ITransaction
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4589
diff
changeset
|
869 } |
ff8170d17d90
moving all accesses to databases from IDatabaseWrapper to ITransaction
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4589
diff
changeset
|
870 } |
ff8170d17d90
moving all accesses to databases from IDatabaseWrapper to ITransaction
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4589
diff
changeset
|
871 |
ff8170d17d90
moving all accesses to databases from IDatabaseWrapper to ITransaction
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4589
diff
changeset
|
872 |
ff8170d17d90
moving all accesses to databases from IDatabaseWrapper to ITransaction
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4589
diff
changeset
|
873 virtual bool LookupParent(int64_t& parentId, |
ff8170d17d90
moving all accesses to databases from IDatabaseWrapper to ITransaction
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4589
diff
changeset
|
874 int64_t resourceId) ORTHANC_OVERRIDE |
ff8170d17d90
moving all accesses to databases from IDatabaseWrapper to ITransaction
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
875 { |
ff8170d17d90
moving all accesses to databases from IDatabaseWrapper to ITransaction
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4589
diff
changeset
|
876 SQLite::Statement s(db_, SQLITE_FROM_HERE, |
ff8170d17d90
moving all accesses to databases from IDatabaseWrapper to ITransaction
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4589
diff
changeset
|
877 "SELECT parentId FROM Resources WHERE internalId=?"); |
ff8170d17d90
moving all accesses to databases from IDatabaseWrapper to ITransaction
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4589
diff
changeset
|
878 s.BindInt64(0, resourceId); |
ff8170d17d90
moving all accesses to databases from IDatabaseWrapper to ITransaction
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
879 |
ff8170d17d90
moving all accesses to databases from IDatabaseWrapper to ITransaction
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parents:
4589
diff
changeset
|
880 if (!s.Step()) |
ff8170d17d90
moving all accesses to databases from IDatabaseWrapper to ITransaction
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
881 { |
ff8170d17d90
moving all accesses to databases from IDatabaseWrapper to ITransaction
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4589
diff
changeset
|
882 throw OrthancException(ErrorCode_UnknownResource); |
ff8170d17d90
moving all accesses to databases from IDatabaseWrapper to ITransaction
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
883 } |
ff8170d17d90
moving all accesses to databases from IDatabaseWrapper to ITransaction
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
884 |
ff8170d17d90
moving all accesses to databases from IDatabaseWrapper to ITransaction
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4589
diff
changeset
|
885 if (s.ColumnIsNull(0)) |
ff8170d17d90
moving all accesses to databases from IDatabaseWrapper to ITransaction
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
886 { |
ff8170d17d90
moving all accesses to databases from IDatabaseWrapper to ITransaction
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4589
diff
changeset
|
887 return false; |
ff8170d17d90
moving all accesses to databases from IDatabaseWrapper to ITransaction
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4589
diff
changeset
|
888 } |
ff8170d17d90
moving all accesses to databases from IDatabaseWrapper to ITransaction
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4589
diff
changeset
|
889 else |
ff8170d17d90
moving all accesses to databases from IDatabaseWrapper to ITransaction
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4589
diff
changeset
|
890 { |
ff8170d17d90
moving all accesses to databases from IDatabaseWrapper to ITransaction
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parents:
4589
diff
changeset
|
891 parentId = s.ColumnInt(0); |
ff8170d17d90
moving all accesses to databases from IDatabaseWrapper to ITransaction
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4589
diff
changeset
|
892 return true; |
ff8170d17d90
moving all accesses to databases from IDatabaseWrapper to ITransaction
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4589
diff
changeset
|
893 } |
ff8170d17d90
moving all accesses to databases from IDatabaseWrapper to ITransaction
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4589
diff
changeset
|
894 } |
ff8170d17d90
moving all accesses to databases from IDatabaseWrapper to ITransaction
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4589
diff
changeset
|
895 |
ff8170d17d90
moving all accesses to databases from IDatabaseWrapper to ITransaction
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4589
diff
changeset
|
896 |
ff8170d17d90
moving all accesses to databases from IDatabaseWrapper to ITransaction
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parents:
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diff
changeset
|
897 virtual bool LookupResourceAndParent(int64_t& id, |
ff8170d17d90
moving all accesses to databases from IDatabaseWrapper to ITransaction
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parents:
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diff
changeset
|
898 ResourceType& type, |
ff8170d17d90
moving all accesses to databases from IDatabaseWrapper to ITransaction
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parents:
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diff
changeset
|
899 std::string& parentPublicId, |
ff8170d17d90
moving all accesses to databases from IDatabaseWrapper to ITransaction
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parents:
4589
diff
changeset
|
900 const std::string& publicId) ORTHANC_OVERRIDE |
ff8170d17d90
moving all accesses to databases from IDatabaseWrapper to ITransaction
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
901 { |
ff8170d17d90
moving all accesses to databases from IDatabaseWrapper to ITransaction
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4589
diff
changeset
|
902 return ILookupResourceAndParent::Apply(*this, id, type, parentPublicId, publicId); |
ff8170d17d90
moving all accesses to databases from IDatabaseWrapper to ITransaction
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4589
diff
changeset
|
903 } |
ff8170d17d90
moving all accesses to databases from IDatabaseWrapper to ITransaction
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
904 |
ff8170d17d90
moving all accesses to databases from IDatabaseWrapper to ITransaction
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4589
diff
changeset
|
905 |
ff8170d17d90
moving all accesses to databases from IDatabaseWrapper to ITransaction
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
906 virtual bool LookupResource(int64_t& id, |
ff8170d17d90
moving all accesses to databases from IDatabaseWrapper to ITransaction
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diff
changeset
|
907 ResourceType& type, |
ff8170d17d90
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4589
diff
changeset
|
908 const std::string& publicId) ORTHANC_OVERRIDE |
ff8170d17d90
moving all accesses to databases from IDatabaseWrapper to ITransaction
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parents:
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diff
changeset
|
909 { |
ff8170d17d90
moving all accesses to databases from IDatabaseWrapper to ITransaction
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diff
changeset
|
910 SQLite::Statement s(db_, SQLITE_FROM_HERE, |
ff8170d17d90
moving all accesses to databases from IDatabaseWrapper to ITransaction
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parents:
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diff
changeset
|
911 "SELECT internalId, resourceType FROM Resources WHERE publicId=?"); |
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moving all accesses to databases from IDatabaseWrapper to ITransaction
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parents:
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diff
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|
912 s.BindString(0, publicId); |
ff8170d17d90
moving all accesses to databases from IDatabaseWrapper to ITransaction
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|
913 |
ff8170d17d90
moving all accesses to databases from IDatabaseWrapper to ITransaction
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
914 if (!s.Step()) |
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moving all accesses to databases from IDatabaseWrapper to ITransaction
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diff
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|
915 { |
ff8170d17d90
moving all accesses to databases from IDatabaseWrapper to ITransaction
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parents:
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diff
changeset
|
916 return false; |
ff8170d17d90
moving all accesses to databases from IDatabaseWrapper to ITransaction
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
917 } |
ff8170d17d90
moving all accesses to databases from IDatabaseWrapper to ITransaction
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
918 else |
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moving all accesses to databases from IDatabaseWrapper to ITransaction
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
919 { |
ff8170d17d90
moving all accesses to databases from IDatabaseWrapper to ITransaction
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diff
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|
920 id = s.ColumnInt(0); |
ff8170d17d90
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diff
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|
921 type = static_cast<ResourceType>(s.ColumnInt(1)); |
ff8170d17d90
moving all accesses to databases from IDatabaseWrapper to ITransaction
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|
922 |
ff8170d17d90
moving all accesses to databases from IDatabaseWrapper to ITransaction
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
923 // Check whether there is a single resource with this public id |
ff8170d17d90
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diff
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|
924 assert(!s.Step()); |
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
925 |
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moving all accesses to databases from IDatabaseWrapper to ITransaction
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
926 return true; |
ff8170d17d90
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
927 } |
ff8170d17d90
moving all accesses to databases from IDatabaseWrapper to ITransaction
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
928 } |
ff8170d17d90
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
929 |
ff8170d17d90
moving all accesses to databases from IDatabaseWrapper to ITransaction
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
930 |
ff8170d17d90
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
931 virtual bool SelectPatientToRecycle(int64_t& internalId) ORTHANC_OVERRIDE |
ff8170d17d90
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diff
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|
932 { |
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moving all accesses to databases from IDatabaseWrapper to ITransaction
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diff
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|
933 SQLite::Statement s(db_, SQLITE_FROM_HERE, |
ff8170d17d90
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|
934 "SELECT patientId FROM PatientRecyclingOrder ORDER BY seq ASC LIMIT 1"); |
ff8170d17d90
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
935 |
ff8170d17d90
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
936 if (!s.Step()) |
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
937 { |
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moving all accesses to databases from IDatabaseWrapper to ITransaction
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
938 // No patient remaining or all the patients are protected |
ff8170d17d90
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
939 return false; |
ff8170d17d90
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
940 } |
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
941 else |
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
942 { |
ff8170d17d90
moving all accesses to databases from IDatabaseWrapper to ITransaction
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
943 internalId = s.ColumnInt(0); |
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diff
changeset
|
944 return true; |
ff8170d17d90
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
945 } |
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diff
changeset
|
946 } |
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
947 |
ff8170d17d90
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
948 |
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Sebastien Jodogne <s.jodogne@gmail.com>
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|
949 virtual bool SelectPatientToRecycle(int64_t& internalId, |
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|
950 int64_t patientIdToAvoid) ORTHANC_OVERRIDE |
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diff
changeset
|
951 { |
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moving all accesses to databases from IDatabaseWrapper to ITransaction
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
952 SQLite::Statement s(db_, SQLITE_FROM_HERE, |
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diff
changeset
|
953 "SELECT patientId FROM PatientRecyclingOrder " |
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
954 "WHERE patientId != ? ORDER BY seq ASC LIMIT 1"); |
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diff
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|
955 s.BindInt64(0, patientIdToAvoid); |
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diff
changeset
|
956 |
ff8170d17d90
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
957 if (!s.Step()) |
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diff
changeset
|
958 { |
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diff
changeset
|
959 // No patient remaining or all the patients are protected |
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changeset
|
960 return false; |
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diff
changeset
|
961 } |
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|
962 else |
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diff
changeset
|
963 { |
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|
964 internalId = s.ColumnInt(0); |
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changeset
|
965 return true; |
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diff
changeset
|
966 } |
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diff
changeset
|
967 } |
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changeset
|
968 |
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diff
changeset
|
969 |
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changeset
|
970 virtual void SetGlobalProperty(GlobalProperty property, |
4607
f75c63aa9de0
differentiating between shared and private global properties
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diff
changeset
|
971 bool shared, |
4591
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|
972 const std::string& value) ORTHANC_OVERRIDE |
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diff
changeset
|
973 { |
4607
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
974 // The "shared" info is not used by the SQLite database, as it |
f75c63aa9de0
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diff
changeset
|
975 // can only be used by one Orthanc server. |
f75c63aa9de0
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diff
changeset
|
976 |
5090
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Made the default SQLite DB more robust wrt future updates like adding new columns in DB.
Alain Mazy <am@osimis.io>
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changeset
|
977 SQLite::Statement s(db_, SQLITE_FROM_HERE, "INSERT OR REPLACE INTO GlobalProperties (property, value) VALUES(?, ?)"); |
4591
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|
978 s.BindInt(0, property); |
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|
979 s.BindString(1, value); |
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|
980 s.Run(); |
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diff
changeset
|
981 } |
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diff
changeset
|
982 |
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diff
changeset
|
983 |
4592 | 984 // From the "ISetResourcesContent" interface |
4591
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|
985 virtual void SetIdentifierTag(int64_t id, |
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|
986 const DicomTag& tag, |
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|
987 const std::string& value) ORTHANC_OVERRIDE |
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changeset
|
988 { |
5090
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Alain Mazy <am@osimis.io>
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diff
changeset
|
989 SQLite::Statement s(db_, SQLITE_FROM_HERE, "INSERT INTO DicomIdentifiers (id, tagGroup, tagElement, value) VALUES(?, ?, ?, ?)"); |
4591
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|
990 s.BindInt64(0, id); |
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|
991 s.BindInt(1, tag.GetGroup()); |
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|
992 s.BindInt(2, tag.GetElement()); |
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|
993 s.BindString(3, value); |
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|
994 s.Run(); |
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|
995 } |
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changeset
|
996 |
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changeset
|
997 |
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changeset
|
998 virtual void SetProtectedPatient(int64_t internalId, |
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changeset
|
999 bool isProtected) ORTHANC_OVERRIDE |
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|
1000 { |
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|
1001 if (isProtected) |
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changeset
|
1002 { |
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changeset
|
1003 SQLite::Statement s(db_, SQLITE_FROM_HERE, "DELETE FROM PatientRecyclingOrder WHERE patientId=?"); |
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|
1004 s.BindInt64(0, internalId); |
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|
1005 s.Run(); |
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|
1006 } |
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|
1007 else if (IsProtectedPatient(internalId)) |
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changeset
|
1008 { |
5090
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Alain Mazy <am@osimis.io>
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diff
changeset
|
1009 SQLite::Statement s(db_, SQLITE_FROM_HERE, "INSERT INTO PatientRecyclingOrder (seq, patientId) VALUES(NULL, ?)"); |
4591
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|
1010 s.BindInt64(0, internalId); |
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changeset
|
1011 s.Run(); |
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|
1012 } |
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|
1013 else |
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changeset
|
1014 { |
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changeset
|
1015 // Nothing to do: The patient is already unprotected |
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changeset
|
1016 } |
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|
1017 } |
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changeset
|
1018 |
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changeset
|
1019 |
4592 | 1020 // From the "ISetResourcesContent" interface |
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1021 virtual void SetMainDicomTag(int64_t id, |
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1022 const DicomTag& tag, |
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1023 const std::string& value) ORTHANC_OVERRIDE |
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1024 { |
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1025 SQLite::Statement s(db_, SQLITE_FROM_HERE, "INSERT INTO MainDicomTags (id, tagGroup, tagElement, value) VALUES(?, ?, ?, ?)"); |
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1026 s.BindInt64(0, id); |
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1027 s.BindInt(1, tag.GetGroup()); |
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1028 s.BindInt(2, tag.GetElement()); |
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1029 s.BindString(3, value); |
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1030 s.Run(); |
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1031 } |
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1032 |
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1033 |
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1034 virtual void SetMetadata(int64_t id, |
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1035 MetadataType type, |
4623
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1036 const std::string& value, |
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1037 int64_t revision) ORTHANC_OVERRIDE |
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1038 { |
4623
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1039 // TODO - REVISIONS |
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1040 SQLite::Statement s(db_, SQLITE_FROM_HERE, "INSERT OR REPLACE INTO Metadata (id, type, value) VALUES(?, ?, ?)"); |
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1041 s.BindInt64(0, id); |
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1042 s.BindInt(1, type); |
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1043 s.BindString(2, value); |
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1044 s.Run(); |
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1045 } |
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1046 |
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1047 |
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1048 virtual void SetResourcesContent(const Orthanc::ResourcesContent& content) ORTHANC_OVERRIDE |
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1049 { |
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1050 ISetResourcesContent::Apply(*this, content); |
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1051 } |
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1052 |
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1053 |
4592 | 1054 // From the "ICreateInstance" interface |
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1055 virtual void TagMostRecentPatient(int64_t patient) ORTHANC_OVERRIDE |
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1056 { |
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1057 { |
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1058 SQLite::Statement s(db_, SQLITE_FROM_HERE, |
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1059 "DELETE FROM PatientRecyclingOrder WHERE patientId=?"); |
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1060 s.BindInt64(0, patient); |
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1061 s.Run(); |
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1062 |
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1063 assert(db_.GetLastChangeCount() == 0 || |
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1064 db_.GetLastChangeCount() == 1); |
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1065 |
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1066 if (db_.GetLastChangeCount() == 0) |
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1067 { |
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1068 // The patient was protected, there was nothing to delete from the recycling order |
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1069 return; |
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1070 } |
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1071 } |
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1072 |
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1073 { |
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1074 SQLite::Statement s(db_, SQLITE_FROM_HERE, |
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1075 "INSERT INTO PatientRecyclingOrder (seq, patientId) VALUES(NULL, ?)"); |
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1076 s.BindInt64(0, patient); |
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1077 s.Run(); |
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1078 } |
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1079 } |
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1080 }; |
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1081 |
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1082 |
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1083 class SQLiteDatabaseWrapper::SignalFileDeleted : public SQLite::IScalarFunction |
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1084 { |
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1085 private: |
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1086 SQLiteDatabaseWrapper& sqlite_; |
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1087 |
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1088 public: |
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1089 SignalFileDeleted(SQLiteDatabaseWrapper& sqlite) : |
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1090 sqlite_(sqlite) |
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1091 { |
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1092 } |
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1093 |
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1094 virtual const char* GetName() const ORTHANC_OVERRIDE |
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1095 { |
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1096 return "SignalFileDeleted"; |
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1097 } |
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1098 |
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1099 virtual unsigned int GetCardinality() const ORTHANC_OVERRIDE |
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1100 { |
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1101 return 7; |
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1102 } |
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1103 |
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1104 virtual void Compute(SQLite::FunctionContext& context) ORTHANC_OVERRIDE |
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1105 { |
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1106 if (sqlite_.activeTransaction_ != NULL) |
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1107 { |
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1108 std::string uncompressedMD5, compressedMD5; |
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1109 |
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1110 if (!context.IsNullValue(5)) |
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1111 { |
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1112 uncompressedMD5 = context.GetStringValue(5); |
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1113 } |
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1114 |
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1115 if (!context.IsNullValue(6)) |
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1116 { |
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1117 compressedMD5 = context.GetStringValue(6); |
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1118 } |
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1119 |
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1120 FileInfo info(context.GetStringValue(0), |
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1121 static_cast<FileContentType>(context.GetIntValue(1)), |
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1122 static_cast<uint64_t>(context.GetInt64Value(2)), |
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1123 uncompressedMD5, |
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1124 static_cast<CompressionType>(context.GetIntValue(3)), |
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1125 static_cast<uint64_t>(context.GetInt64Value(4)), |
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1126 compressedMD5); |
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1127 |
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1128 sqlite_.activeTransaction_->GetListener().SignalAttachmentDeleted(info); |
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1129 } |
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1130 } |
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1131 }; |
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1132 |
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1133 |
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1134 class SQLiteDatabaseWrapper::SignalResourceDeleted : public SQLite::IScalarFunction |
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1135 { |
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1136 private: |
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1137 SQLiteDatabaseWrapper& sqlite_; |
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1138 |
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1139 public: |
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1140 SignalResourceDeleted(SQLiteDatabaseWrapper& sqlite) : |
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1141 sqlite_(sqlite) |
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1142 { |
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1143 } |
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1144 |
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1145 virtual const char* GetName() const ORTHANC_OVERRIDE |
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1146 { |
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1147 return "SignalResourceDeleted"; |
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1148 } |
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1149 |
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1150 virtual unsigned int GetCardinality() const ORTHANC_OVERRIDE |
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1151 { |
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1152 return 2; |
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1153 } |
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1154 |
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1155 virtual void Compute(SQLite::FunctionContext& context) ORTHANC_OVERRIDE |
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1156 { |
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1157 if (sqlite_.activeTransaction_ != NULL) |
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1158 { |
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1159 sqlite_.activeTransaction_->GetListener(). |
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1160 SignalResourceDeleted(static_cast<ResourceType>(context.GetIntValue(1)), |
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1161 context.GetStringValue(0)); |
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1162 } |
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1163 } |
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1164 }; |
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1165 |
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1166 |
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1167 class SQLiteDatabaseWrapper::ReadWriteTransaction : public SQLiteDatabaseWrapper::TransactionBase |
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1168 { |
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1169 private: |
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1170 SQLiteDatabaseWrapper& that_; |
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1171 std::unique_ptr<SQLite::Transaction> transaction_; |
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1172 int64_t initialDiskSize_; |
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1173 |
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1174 public: |
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1175 ReadWriteTransaction(SQLiteDatabaseWrapper& that, |
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1176 IDatabaseListener& listener) : |
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1177 TransactionBase(that.mutex_, that.db_, listener, *that.signalRemainingAncestor_), |
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1178 that_(that), |
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1179 transaction_(new SQLite::Transaction(that_.db_)) |
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1180 { |
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1181 if (that_.activeTransaction_ != NULL) |
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1182 { |
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1183 throw OrthancException(ErrorCode_InternalError); |
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1184 } |
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1185 |
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1186 that_.activeTransaction_ = this; |
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1187 |
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1188 #if defined(NDEBUG) |
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1189 // Release mode |
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1190 initialDiskSize_ = 0; |
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1191 #else |
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1192 // Debug mode |
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1193 initialDiskSize_ = static_cast<int64_t>(GetTotalCompressedSize()); |
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1194 #endif |
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1195 } |
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1196 |
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1197 virtual ~ReadWriteTransaction() |
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1198 { |
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1199 assert(that_.activeTransaction_ != NULL); |
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1200 that_.activeTransaction_ = NULL; |
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1201 } |
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1202 |
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1203 void Begin() |
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1204 { |
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1205 transaction_->Begin(); |
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1206 } |
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1207 |
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1208 virtual void Rollback() ORTHANC_OVERRIDE |
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1209 { |
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1210 transaction_->Rollback(); |
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1211 } |
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1212 |
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1213 virtual void Commit(int64_t fileSizeDelta /* only used in debug */) ORTHANC_OVERRIDE |
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1214 { |
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1215 transaction_->Commit(); |
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1216 |
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1217 assert(initialDiskSize_ + fileSizeDelta >= 0 && |
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1218 initialDiskSize_ + fileSizeDelta == static_cast<int64_t>(GetTotalCompressedSize())); |
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1219 } |
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1220 }; |
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1221 |
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1222 |
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1223 class SQLiteDatabaseWrapper::ReadOnlyTransaction : public SQLiteDatabaseWrapper::TransactionBase |
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1224 { |
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1225 private: |
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1226 SQLiteDatabaseWrapper& that_; |
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1227 |
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1228 public: |
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1229 ReadOnlyTransaction(SQLiteDatabaseWrapper& that, |
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1230 IDatabaseListener& listener) : |
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1231 TransactionBase(that.mutex_, that.db_, listener, *that.signalRemainingAncestor_), |
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1232 that_(that) |
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1233 { |
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1234 if (that_.activeTransaction_ != NULL) |
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1235 { |
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1236 throw OrthancException(ErrorCode_InternalError); |
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1237 } |
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1238 |
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1239 that_.activeTransaction_ = this; |
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1240 } |
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1241 |
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1242 virtual ~ReadOnlyTransaction() |
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1243 { |
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1244 assert(that_.activeTransaction_ != NULL); |
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1245 that_.activeTransaction_ = NULL; |
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1246 } |
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1247 |
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1248 virtual void Rollback() ORTHANC_OVERRIDE |
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1249 { |
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1250 } |
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1251 |
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1252 virtual void Commit(int64_t fileSizeDelta /* only used in debug */) ORTHANC_OVERRIDE |
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1253 { |
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1254 if (fileSizeDelta != 0) |
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1255 { |
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1256 throw OrthancException(ErrorCode_InternalError); |
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1257 } |
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1258 } |
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1259 }; |
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1260 |
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1261 |
3017
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1262 SQLiteDatabaseWrapper::SQLiteDatabaseWrapper(const std::string& path) : |
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1263 activeTransaction_(NULL), |
1847 | 1264 signalRemainingAncestor_(NULL), |
1265 version_(0) | |
183 | 1266 { |
1267 db_.Open(path); | |
1268 } | |
1269 | |
2773
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1270 |
3017
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1271 SQLiteDatabaseWrapper::SQLiteDatabaseWrapper() : |
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1272 activeTransaction_(NULL), |
1847 | 1273 signalRemainingAncestor_(NULL), |
1274 version_(0) | |
183 | 1275 { |
1276 db_.OpenInMemory(); | |
1277 } | |
1278 | |
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1279 SQLiteDatabaseWrapper::~SQLiteDatabaseWrapper() |
3116 | 1280 { |
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1281 if (activeTransaction_ != NULL) |
3116 | 1282 { |
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1283 LOG(ERROR) << "A SQLite transaction is still active in the SQLiteDatabaseWrapper destructor: Expect a crash"; |
3116 | 1284 } |
1285 } | |
1286 | |
1287 | |
3017
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1288 void SQLiteDatabaseWrapper::Open() |
183 | 1289 { |
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1290 { |
4594
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1291 boost::mutex::scoped_lock lock(mutex_); |
1717
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SetIdentifierTagInternal
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1292 |
4594
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1293 if (signalRemainingAncestor_ != NULL) |
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1294 { |
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1295 throw OrthancException(ErrorCode_BadSequenceOfCalls); // Cannot open twice |
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1296 } |
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1297 |
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1298 signalRemainingAncestor_ = dynamic_cast<SignalRemainingAncestor*>(db_.Register(new SignalRemainingAncestor)); |
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1299 db_.Register(new SignalFileDeleted(*this)); |
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1300 db_.Register(new SignalResourceDeleted(*this)); |
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1301 |
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1302 db_.Execute("PRAGMA ENCODING=\"UTF-8\";"); |
374 | 1303 |
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1304 // Performance tuning of SQLite with PRAGMAs |
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1305 // http://www.sqlite.org/pragma.html |
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1306 db_.Execute("PRAGMA SYNCHRONOUS=NORMAL;"); |
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1307 db_.Execute("PRAGMA JOURNAL_MODE=WAL;"); |
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1308 db_.Execute("PRAGMA LOCKING_MODE=EXCLUSIVE;"); |
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1309 db_.Execute("PRAGMA WAL_AUTOCHECKPOINT=1000;"); |
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1310 //db_.Execute("PRAGMA TEMP_STORE=memory"); |
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|
1311 |
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|
1312 // Make "LIKE" case-sensitive in SQLite |
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|
1313 db_.Execute("PRAGMA case_sensitive_like = true;"); |
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1314 } |
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1315 |
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|
1316 VoidDatabaseListener listener; |
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1317 |
183 | 1318 { |
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|
1319 std::unique_ptr<ITransaction> transaction(StartTransaction(TransactionType_ReadOnly, listener)); |
1239 | 1320 |
3116 | 1321 if (!db_.DoesTableExist("GlobalProperties")) |
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1322 { |
3116 | 1323 LOG(INFO) << "Creating the database"; |
3018
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|
1324 std::string query; |
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|
1325 ServerResources::GetFileResource(query, ServerResources::PREPARE_DATABASE); |
3018
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|
1326 db_.Execute(query); |
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1327 } |
3116 | 1328 |
1329 // Check the version of the database | |
1330 std::string tmp; | |
4607
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|
1331 if (!transaction->LookupGlobalProperty(tmp, GlobalProperty_DatabaseSchemaVersion, true /* unused in SQLite */)) |
3116 | 1332 { |
1333 tmp = "Unknown"; | |
1334 } | |
1335 | |
1336 bool ok = false; | |
1337 try | |
1338 { | |
1339 LOG(INFO) << "Version of the Orthanc database: " << tmp; | |
1340 version_ = boost::lexical_cast<unsigned int>(tmp); | |
1341 ok = true; | |
1342 } | |
1343 catch (boost::bad_lexical_cast&) | |
1344 { | |
1345 } | |
1346 | |
1347 if (!ok) | |
1348 { | |
1349 throw OrthancException(ErrorCode_IncompatibleDatabaseVersion, | |
1350 "Incompatible version of the Orthanc database: " + tmp); | |
1351 } | |
1352 | |
1353 // New in Orthanc 1.5.1 | |
1354 if (version_ == 6) | |
1355 { | |
4607
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1356 if (!transaction->LookupGlobalProperty(tmp, GlobalProperty_GetTotalSizeIsFast, true /* unused in SQLite */) || |
3116 | 1357 tmp != "1") |
1358 { | |
1359 LOG(INFO) << "Installing the SQLite triggers to track the size of the attachments"; | |
1360 std::string query; | |
4031
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|
1361 ServerResources::GetFileResource(query, ServerResources::INSTALL_TRACK_ATTACHMENTS_SIZE); |
3116 | 1362 db_.Execute(query); |
1363 } | |
1364 } | |
1365 | |
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1366 transaction->Commit(0); |
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1367 } |
1247 | 1368 } |
1369 | |
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1370 |
4594
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1371 void SQLiteDatabaseWrapper::Close() |
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1372 { |
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|
1373 boost::mutex::scoped_lock lock(mutex_); |
5057
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SQLite: close and delete WAL and SHM files on exit (contribution from Sebastian Höffner)
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1374 // close and delete the WAL when exiting properly -> the DB is stored in a single file (no more -wal and -shm files) |
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1375 db_.Execute("PRAGMA JOURNAL_MODE=DELETE;"); |
4594
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1376 db_.Close(); |
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1377 } |
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1378 |
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1379 |
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1380 static void ExecuteUpgradeScript(SQLite::Connection& db, |
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1381 ServerResources::FileResourceId script) |
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1382 { |
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1383 std::string upgrade; |
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|
1384 ServerResources::GetFileResource(upgrade, script); |
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1385 db.BeginTransaction(); |
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1386 db.Execute(upgrade); |
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1387 db.CommitTransaction(); |
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1388 } |
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1389 |
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|
1390 |
3017
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1391 void SQLiteDatabaseWrapper::Upgrade(unsigned int targetVersion, |
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1392 IStorageArea& storageArea) |
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1393 { |
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1394 boost::mutex::scoped_lock lock(mutex_); |
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1395 |
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1396 if (targetVersion != 6) |
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1397 { |
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1398 throw OrthancException(ErrorCode_IncompatibleDatabaseVersion); |
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1399 } |
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1400 |
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1401 // This version of Orthanc is only compatible with versions 3, 4, |
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1402 // 5 and 6 of the DB schema |
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1403 if (version_ != 3 && |
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1404 version_ != 4 && |
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1405 version_ != 5 && |
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1406 version_ != 6) |
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1407 { |
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1408 throw OrthancException(ErrorCode_IncompatibleDatabaseVersion); |
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1409 } |
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1410 |
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1411 if (version_ == 3) |
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1412 { |
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1413 LOG(WARNING) << "Upgrading database version from 3 to 4"; |
4031
e3b3af80732d
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|
1414 ExecuteUpgradeScript(db_, ServerResources::UPGRADE_DATABASE_3_TO_4); |
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1415 version_ = 4; |
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1416 } |
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1417 |
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1418 if (version_ == 4) |
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1419 { |
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1420 LOG(WARNING) << "Upgrading database version from 4 to 5"; |
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1421 ExecuteUpgradeScript(db_, ServerResources::UPGRADE_DATABASE_4_TO_5); |
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1422 version_ = 5; |
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1423 } |
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1424 |
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1425 if (version_ == 5) |
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1426 { |
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1427 LOG(WARNING) << "Upgrading database version from 5 to 6"; |
1668
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1428 // No change in the DB schema, the step from version 5 to 6 only |
1710 | 1429 // consists in reconstructing the main DICOM tags information |
1430 // (as more tags got included). | |
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1431 |
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1432 VoidDatabaseListener listener; |
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1433 |
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1434 { |
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1435 std::unique_ptr<ITransaction> transaction(StartTransaction(TransactionType_ReadWrite, listener)); |
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1436 ServerToolbox::ReconstructMainDicomTags(*transaction, storageArea, ResourceType_Patient); |
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1437 ServerToolbox::ReconstructMainDicomTags(*transaction, storageArea, ResourceType_Study); |
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1438 ServerToolbox::ReconstructMainDicomTags(*transaction, storageArea, ResourceType_Series); |
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1439 ServerToolbox::ReconstructMainDicomTags(*transaction, storageArea, ResourceType_Instance); |
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|
1440 db_.Execute("UPDATE GlobalProperties SET value=\"6\" WHERE property=" + |
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|
1441 boost::lexical_cast<std::string>(GlobalProperty_DatabaseSchemaVersion) + ";"); |
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|
1442 transaction->Commit(0); |
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1443 } |
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1444 |
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|
1445 version_ = 6; |
1729 | 1446 } |
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1447 } |
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1448 |
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1449 |
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|
1450 IDatabaseWrapper::ITransaction* SQLiteDatabaseWrapper::StartTransaction(TransactionType type, |
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|
1451 IDatabaseListener& listener) |
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|
1452 { |
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|
1453 switch (type) |
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|
1454 { |
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Sebastien Jodogne <s.jodogne@gmail.com>
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|
1455 case TransactionType_ReadOnly: |
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attaching the listener to transactions in IDatabaseWrapper
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diff
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|
1456 return new ReadOnlyTransaction(*this, listener); // This is a no-op transaction in SQLite (thanks to mutex) |
4570
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Sebastien Jodogne <s.jodogne@gmail.com>
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|
1457 |
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|
1458 case TransactionType_ReadWrite: |
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|
1459 { |
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|
1460 std::unique_ptr<ReadWriteTransaction> transaction; |
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|
1461 transaction.reset(new ReadWriteTransaction(*this, listener)); |
4570
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|
1462 transaction->Begin(); |
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|
1463 return transaction.release(); |
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|
1464 } |
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|
1465 |
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|
1466 default: |
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|
1467 throw OrthancException(ErrorCode_InternalError); |
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1468 } |
3019
8336204d95dc
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diff
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|
1469 } |
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refactoring computation of disk size for recycling
Sebastien Jodogne <s.jodogne@gmail.com>
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|
1470 |
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|
1471 |
4594
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|
1472 void SQLiteDatabaseWrapper::FlushToDisk() |
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|
1473 { |
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|
1474 boost::mutex::scoped_lock lock(mutex_); |
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|
1475 db_.FlushToDisk(); |
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1476 } |
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|
1477 |
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1478 |
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|
1479 int64_t SQLiteDatabaseWrapper::UnitTestsTransaction::CreateResource(const std::string& publicId, |
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1480 ResourceType type) |
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1481 { |
5090
cc1a8b3ff319
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1482 SQLite::Statement s(db_, SQLITE_FROM_HERE, "INSERT INTO Resources (internalId, resourceType, publicId, parentId) VALUES(NULL, ?, ?, NULL)"); |
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1483 s.BindInt(0, type); |
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1484 s.BindString(1, publicId); |
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1485 s.Run(); |
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|
1486 return db_.GetLastInsertRowId(); |
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1487 } |
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|
1488 |
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|
1489 |
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1490 void SQLiteDatabaseWrapper::UnitTestsTransaction::AttachChild(int64_t parent, |
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|
1491 int64_t child) |
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|
1492 { |
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|
1493 SQLite::Statement s(db_, SQLITE_FROM_HERE, "UPDATE Resources SET parentId = ? WHERE internalId = ?"); |
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|
1494 s.BindInt64(0, parent); |
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|
1495 s.BindInt64(1, child); |
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|
1496 s.Run(); |
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1497 } |
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|
1498 |
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|
1499 |
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1500 void SQLiteDatabaseWrapper::UnitTestsTransaction::SetIdentifierTag(int64_t id, |
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|
1501 const DicomTag& tag, |
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|
1502 const std::string& value) |
2773
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1503 { |
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1504 SQLite::Statement s(db_, SQLITE_FROM_HERE, "INSERT INTO DicomIdentifiers (id, tagGroup, tagElement, value) VALUES(?, ?, ?, ?)"); |
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1505 s.BindInt64(0, id); |
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1506 s.BindInt(1, tag.GetGroup()); |
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1507 s.BindInt(2, tag.GetElement()); |
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1508 s.BindString(3, value); |
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1509 s.Run(); |
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|
1510 } |
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|
1511 |
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|
1512 |
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1513 void SQLiteDatabaseWrapper::UnitTestsTransaction::SetMainDicomTag(int64_t id, |
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|
1514 const DicomTag& tag, |
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|
1515 const std::string& value) |
2773
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1516 { |
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|
1517 SQLite::Statement s(db_, SQLITE_FROM_HERE, "INSERT INTO MainDicomTags (id, tagGroup, tagElement, value) VALUES(?, ?, ?, ?)"); |
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|
1518 s.BindInt64(0, id); |
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|
1519 s.BindInt(1, tag.GetGroup()); |
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|
1520 s.BindInt(2, tag.GetElement()); |
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|
1521 s.BindString(3, value); |
2773
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|
1522 s.Run(); |
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|
1523 } |
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|
1524 |
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|
1525 |
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|
1526 int64_t SQLiteDatabaseWrapper::UnitTestsTransaction::GetTableRecordCount(const std::string& table) |
2773
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|
1527 { |
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|
1528 /** |
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1529 * "Generally one cannot use SQL parameters/placeholders for |
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|
1530 * database identifiers (tables, columns, views, schemas, etc.) or |
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moving all accesses to databases from IDatabaseWrapper to ITransaction
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|
1531 * database functions (e.g., CURRENT_DATE), but instead only for |
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moving all accesses to databases from IDatabaseWrapper to ITransaction
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|
1532 * binding literal values." => To avoid any SQL injection, we |
ff8170d17d90
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Sebastien Jodogne <s.jodogne@gmail.com>
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1533 * check that the "table" parameter has only alphabetic |
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Sebastien Jodogne <s.jodogne@gmail.com>
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|
1534 * characters. |
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|
1535 * https://stackoverflow.com/a/1274764/881731 |
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moving all accesses to databases from IDatabaseWrapper to ITransaction
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|
1536 **/ |
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moving all accesses to databases from IDatabaseWrapper to ITransaction
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1537 for (size_t i = 0; i < table.size(); i++) |
2773
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1538 { |
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1539 if (!isalpha(table[i])) |
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|
1540 { |
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|
1541 throw OrthancException(ErrorCode_ParameterOutOfRange); |
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|
1542 } |
2773
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|
1543 } |
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|
1544 |
4591
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|
1545 // Don't use "SQLITE_FROM_HERE", otherwise "table" would be cached |
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|
1546 SQLite::Statement s(db_, "SELECT COUNT(*) FROM " + table); |
3105
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More consistent handling of the "Last" field returned by the "/changes" URI
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|
1547 |
2e1711f80f74
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|
1548 if (s.Step()) |
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More consistent handling of the "Last" field returned by the "/changes" URI
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|
1549 { |
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|
1550 int64_t c = s.ColumnInt(0); |
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|
1551 assert(!s.Step()); |
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More consistent handling of the "Last" field returned by the "/changes" URI
Sebastien Jodogne <s.jodogne@gmail.com>
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|
1552 return c; |
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More consistent handling of the "Last" field returned by the "/changes" URI
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|
1553 } |
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Sebastien Jodogne <s.jodogne@gmail.com>
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1554 else |
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|
1555 { |
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|
1556 throw OrthancException(ErrorCode_InternalError); |
3105
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|
1557 } |
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|
1558 } |
3121 | 1559 |
1560 | |
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|
1561 bool SQLiteDatabaseWrapper::UnitTestsTransaction::GetParentPublicId(std::string& target, |
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|
1562 int64_t id) |
3121 | 1563 { |
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|
1564 SQLite::Statement s(db_, SQLITE_FROM_HERE, "SELECT a.publicId FROM Resources AS a, Resources AS b " |
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|
1565 "WHERE a.internalId = b.parentId AND b.internalId = ?"); |
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|
1566 s.BindInt64(0, id); |
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|
1567 |
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|
1568 if (s.Step()) |
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|
1569 { |
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|
1570 target = s.ColumnString(0); |
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1571 return true; |
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1572 } |
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1573 else |
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|
1574 { |
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|
1575 return false; |
3124
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|
1576 } |
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|
1577 } |
3124
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|
1578 |
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|
1579 |
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1580 void SQLiteDatabaseWrapper::UnitTestsTransaction::GetChildren(std::list<std::string>& childrenPublicIds, |
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1581 int64_t id) |
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1582 { |
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1583 SQLite::Statement s(db_, SQLITE_FROM_HERE, "SELECT publicId FROM Resources WHERE parentId=?"); |
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|
1584 s.BindInt64(0, id); |
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|
1585 |
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|
1586 childrenPublicIds.clear(); |
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|
1587 while (s.Step()) |
3124
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|
1588 { |
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|
1589 childrenPublicIds.push_back(s.ColumnString(0)); |
3124
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changeset
|
1590 } |
3121 | 1591 } |
183 | 1592 } |