Mercurial > hg > orthanc
annotate OrthancServer/ServerIndex.cpp @ 3019:8336204d95dc db-changes
refactoring computation of disk size for recycling
author | Sebastien Jodogne <s.jodogne@gmail.com> |
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date | Fri, 14 Dec 2018 18:07:40 +0100 |
parents | 0e1755e5efd0 |
children | d207f6ac1f86 |
rev | line source |
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0 | 1 /** |
62 | 2 * Orthanc - A Lightweight, RESTful DICOM Store |
1900 | 3 * Copyright (C) 2012-2016 Sebastien Jodogne, Medical Physics |
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4 * Department, University Hospital of Liege, Belgium |
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5 * Copyright (C) 2017-2018 Osimis S.A., Belgium |
0 | 6 * |
7 * This program is free software: you can redistribute it and/or | |
8 * modify it under the terms of the GNU General Public License as | |
9 * published by the Free Software Foundation, either version 3 of the | |
10 * License, or (at your option) any later version. | |
136 | 11 * |
12 * In addition, as a special exception, the copyright holders of this | |
13 * program give permission to link the code of its release with the | |
14 * OpenSSL project's "OpenSSL" library (or with modified versions of it | |
15 * that use the same license as the "OpenSSL" library), and distribute | |
16 * the linked executables. You must obey the GNU General Public License | |
17 * in all respects for all of the code used other than "OpenSSL". If you | |
18 * modify file(s) with this exception, you may extend this exception to | |
19 * your version of the file(s), but you are not obligated to do so. If | |
20 * you do not wish to do so, delete this exception statement from your | |
21 * version. If you delete this exception statement from all source files | |
22 * in the program, then also delete it here. | |
0 | 23 * |
24 * This program is distributed in the hope that it will be useful, but | |
25 * WITHOUT ANY WARRANTY; without even the implied warranty of | |
26 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU | |
27 * General Public License for more details. | |
28 * | |
29 * You should have received a copy of the GNU General Public License | |
30 * along with this program. If not, see <http://www.gnu.org/licenses/>. | |
31 **/ | |
32 | |
33 | |
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34 #include "PrecompiledHeadersServer.h" |
0 | 35 #include "ServerIndex.h" |
36 | |
6 | 37 #ifndef NOMINMAX |
2 | 38 #define NOMINMAX |
6 | 39 #endif |
40 | |
1198 | 41 #include "ServerIndexChange.h" |
8 | 42 #include "EmbeddedResources.h" |
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43 #include "OrthancConfiguration.h" |
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44 #include "../Core/DicomParsing/ParsedDicomFile.h" |
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45 #include "ServerToolbox.h" |
0 | 46 #include "../Core/Toolbox.h" |
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47 #include "../Core/Logging.h" |
0 | 48 #include "../Core/DicomFormat/DicomArray.h" |
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49 |
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50 #include "../Core/DicomParsing/FromDcmtkBridge.h" |
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51 #include "ServerContext.h" |
1822 | 52 #include "DicomInstanceToStore.h" |
2122 | 53 #include "Search/LookupResource.h" |
0 | 54 |
55 #include <boost/lexical_cast.hpp> | |
56 #include <stdio.h> | |
57 | |
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58 static const uint64_t MEGA_BYTES = 1024 * 1024; |
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59 |
62 | 60 namespace Orthanc |
0 | 61 { |
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62 class ServerIndex::Listener : public IDatabaseListener |
0 | 63 { |
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64 private: |
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65 struct FileToRemove |
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66 { |
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67 private: |
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68 std::string uuid_; |
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69 FileContentType type_; |
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70 |
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71 public: |
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72 FileToRemove(const FileInfo& info) : uuid_(info.GetUuid()), |
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73 type_(info.GetContentType()) |
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74 { |
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75 } |
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76 |
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77 const std::string& GetUuid() const |
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78 { |
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79 return uuid_; |
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80 } |
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81 |
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82 FileContentType GetContentType() const |
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83 { |
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84 return type_; |
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85 } |
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86 }; |
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87 |
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88 ServerContext& context_; |
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89 bool hasRemainingLevel_; |
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90 ResourceType remainingType_; |
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91 std::string remainingPublicId_; |
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92 std::list<FileToRemove> pendingFilesToRemove_; |
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93 std::list<ServerIndexChange> pendingChanges_; |
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94 uint64_t sizeOfFilesToRemove_; |
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95 bool insideTransaction_; |
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96 |
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97 void Reset() |
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98 { |
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99 sizeOfFilesToRemove_ = 0; |
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100 hasRemainingLevel_ = false; |
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101 pendingFilesToRemove_.clear(); |
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102 pendingChanges_.clear(); |
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103 } |
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104 |
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105 public: |
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106 Listener(ServerContext& context) : context_(context), |
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107 insideTransaction_(false) |
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108 { |
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109 Reset(); |
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110 assert(ResourceType_Patient < ResourceType_Study && |
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111 ResourceType_Study < ResourceType_Series && |
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112 ResourceType_Series < ResourceType_Instance); |
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113 } |
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114 |
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115 void StartTransaction() |
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116 { |
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117 Reset(); |
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118 insideTransaction_ = true; |
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119 } |
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120 |
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121 void EndTransaction() |
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122 { |
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123 insideTransaction_ = false; |
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124 } |
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125 |
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126 uint64_t GetSizeOfFilesToRemove() |
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127 { |
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128 return sizeOfFilesToRemove_; |
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129 } |
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130 |
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131 void CommitFilesToRemove() |
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132 { |
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133 for (std::list<FileToRemove>::const_iterator |
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134 it = pendingFilesToRemove_.begin(); |
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135 it != pendingFilesToRemove_.end(); ++it) |
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136 { |
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137 context_.RemoveFile(it->GetUuid(), it->GetContentType()); |
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138 } |
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139 } |
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140 |
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141 void CommitChanges() |
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142 { |
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143 for (std::list<ServerIndexChange>::const_iterator |
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144 it = pendingChanges_.begin(); |
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145 it != pendingChanges_.end(); ++it) |
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146 { |
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147 context_.SignalChange(*it); |
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148 } |
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149 } |
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150 |
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151 virtual void SignalRemainingAncestor(ResourceType parentType, |
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152 const std::string& publicId) |
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153 { |
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154 VLOG(1) << "Remaining ancestor \"" << publicId << "\" (" << parentType << ")"; |
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155 |
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156 if (hasRemainingLevel_) |
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157 { |
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158 if (parentType < remainingType_) |
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159 { |
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160 remainingType_ = parentType; |
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161 remainingPublicId_ = publicId; |
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162 } |
1158 | 163 } |
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164 else |
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165 { |
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166 hasRemainingLevel_ = true; |
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167 remainingType_ = parentType; |
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168 remainingPublicId_ = publicId; |
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169 } |
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170 } |
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171 |
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172 virtual void SignalFileDeleted(const FileInfo& info) |
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173 { |
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174 assert(Toolbox::IsUuid(info.GetUuid())); |
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175 pendingFilesToRemove_.push_back(FileToRemove(info)); |
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176 sizeOfFilesToRemove_ += info.GetCompressedSize(); |
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177 } |
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178 |
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179 virtual void SignalChange(const ServerIndexChange& change) |
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180 { |
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181 VLOG(1) << "Change related to resource " << change.GetPublicId() << " of type " |
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182 << EnumerationToString(change.GetResourceType()) << ": " |
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183 << EnumerationToString(change.GetChangeType()); |
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184 |
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185 if (insideTransaction_) |
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186 { |
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187 pendingChanges_.push_back(change); |
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188 } |
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189 else |
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190 { |
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191 context_.SignalChange(change); |
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192 } |
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193 } |
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194 |
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195 bool HasRemainingLevel() const |
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196 { |
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197 return hasRemainingLevel_; |
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198 } |
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199 |
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200 ResourceType GetRemainingType() const |
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201 { |
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202 assert(HasRemainingLevel()); |
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203 return remainingType_; |
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204 } |
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205 |
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206 const std::string& GetRemainingPublicId() const |
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207 { |
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208 assert(HasRemainingLevel()); |
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209 return remainingPublicId_; |
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210 } |
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211 }; |
0 | 212 |
213 | |
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214 class ServerIndex::Transaction |
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215 { |
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216 private: |
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217 ServerIndex& index_; |
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218 std::auto_ptr<IDatabaseWrapper::ITransaction> transaction_; |
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219 bool isCommitted_; |
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220 |
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221 public: |
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222 Transaction(ServerIndex& index) : |
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223 index_(index), |
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224 isCommitted_(false) |
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225 { |
1247 | 226 transaction_.reset(index_.db_.StartTransaction()); |
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227 transaction_->Begin(); |
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228 |
1270 | 229 assert(index_.currentStorageSize_ == index_.db_.GetTotalCompressedSize()); |
230 | |
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231 index_.listener_->StartTransaction(); |
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232 } |
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233 |
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234 ~Transaction() |
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235 { |
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236 index_.listener_->EndTransaction(); |
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237 |
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238 if (!isCommitted_) |
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239 { |
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240 transaction_->Rollback(); |
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241 } |
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242 } |
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243 |
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244 void Commit(uint64_t sizeOfAddedFiles) |
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245 { |
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246 if (!isCommitted_) |
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247 { |
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248 int64_t delta = (static_cast<int64_t>(sizeOfAddedFiles) - |
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249 static_cast<int64_t>(index_.listener_->GetSizeOfFilesToRemove())); |
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250 |
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251 transaction_->Commit(delta); |
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252 |
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253 // We can remove the files once the SQLite transaction has |
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254 // been successfully committed. Some files might have to be |
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255 // deleted because of recycling. |
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256 index_.listener_->CommitFilesToRemove(); |
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257 |
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258 index_.currentStorageSize_ += sizeOfAddedFiles; |
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259 |
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260 assert(index_.currentStorageSize_ >= index_.listener_->GetSizeOfFilesToRemove()); |
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261 index_.currentStorageSize_ -= index_.listener_->GetSizeOfFilesToRemove(); |
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262 |
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263 // Send all the pending changes to the Orthanc plugins |
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264 index_.listener_->CommitChanges(); |
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265 |
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266 isCommitted_ = true; |
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267 } |
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268 } |
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269 }; |
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270 |
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271 |
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272 class ServerIndex::UnstableResourcePayload |
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273 { |
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274 private: |
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275 ResourceType type_; |
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276 std::string publicId_; |
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277 boost::posix_time::ptime time_; |
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278 |
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279 public: |
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280 UnstableResourcePayload() : type_(ResourceType_Instance) |
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281 { |
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282 } |
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283 |
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284 UnstableResourcePayload(Orthanc::ResourceType type, |
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285 const std::string& publicId) : |
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286 type_(type), |
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287 publicId_(publicId) |
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288 { |
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289 time_ = boost::posix_time::second_clock::local_time(); |
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290 } |
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291 |
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292 unsigned int GetAge() const |
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293 { |
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294 return (boost::posix_time::second_clock::local_time() - time_).total_seconds(); |
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295 } |
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296 |
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297 ResourceType GetResourceType() const |
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298 { |
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299 return type_; |
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300 } |
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301 |
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302 const std::string& GetPublicId() const |
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303 { |
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304 return publicId_; |
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305 } |
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306 }; |
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307 |
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308 |
212 | 309 bool ServerIndex::DeleteResource(Json::Value& target, |
0 | 310 const std::string& uuid, |
202 | 311 ResourceType expectedType) |
0 | 312 { |
206
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313 boost::mutex::scoped_lock lock(mutex_); |
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314 |
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315 Transaction t(*this); |
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316 |
202 | 317 int64_t id; |
318 ResourceType type; | |
1294 | 319 if (!db_.LookupResource(id, type, uuid) || |
202 | 320 expectedType != type) |
0 | 321 { |
322 return false; | |
323 } | |
202 | 324 |
1247 | 325 db_.DeleteResource(id); |
0 | 326 |
202 | 327 if (listener_->HasRemainingLevel()) |
0 | 328 { |
202 | 329 ResourceType type = listener_->GetRemainingType(); |
330 const std::string& uuid = listener_->GetRemainingPublicId(); | |
0 | 331 |
332 target["RemainingAncestor"] = Json::Value(Json::objectValue); | |
204 | 333 target["RemainingAncestor"]["Path"] = GetBasePath(type, uuid); |
434
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334 target["RemainingAncestor"]["Type"] = EnumerationToString(type); |
0 | 335 target["RemainingAncestor"]["ID"] = uuid; |
336 } | |
337 else | |
338 { | |
339 target["RemainingAncestor"] = Json::nullValue; | |
340 } | |
341 | |
278
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342 t.Commit(0); |
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343 |
0 | 344 return true; |
345 } | |
346 | |
347 | |
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348 void ServerIndex::FlushThread(ServerIndex* that, |
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349 unsigned int threadSleep) |
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350 { |
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351 // By default, wait for 10 seconds before flushing |
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352 unsigned int sleep = 10; |
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353 |
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354 try |
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355 { |
744 | 356 boost::mutex::scoped_lock lock(that->mutex_); |
1239 | 357 std::string sleepString; |
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358 |
1247 | 359 if (that->db_.LookupGlobalProperty(sleepString, GlobalProperty_FlushSleep) && |
1239 | 360 Toolbox::IsInteger(sleepString)) |
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361 { |
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362 sleep = boost::lexical_cast<unsigned int>(sleepString); |
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363 } |
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364 } |
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365 catch (boost::bad_lexical_cast&) |
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366 { |
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367 } |
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368 |
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369 LOG(INFO) << "Starting the database flushing thread (sleep = " << sleep << ")"; |
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370 |
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371 unsigned int count = 0; |
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372 |
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373 while (!that->done_) |
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374 { |
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375 boost::this_thread::sleep(boost::posix_time::milliseconds(threadSleep)); |
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376 count++; |
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377 if (count < sleep) |
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378 { |
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379 continue; |
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380 } |
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381 |
2217 | 382 Logging::Flush(); |
383 | |
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384 boost::mutex::scoped_lock lock(that->mutex_); |
1247 | 385 that->db_.FlushToDisk(); |
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386 count = 0; |
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387 } |
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388 |
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389 LOG(INFO) << "Stopping the database flushing thread"; |
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390 } |
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391 |
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392 |
1247 | 393 static void ComputeExpectedNumberOfInstances(IDatabaseWrapper& db, |
433 | 394 int64_t series, |
395 const DicomMap& dicomSummary) | |
396 { | |
397 try | |
398 { | |
656 | 399 const DicomValue* value; |
400 const DicomValue* value2; | |
401 | |
433 | 402 if ((value = dicomSummary.TestAndGetValue(DICOM_TAG_IMAGES_IN_ACQUISITION)) != NULL && |
403 (value2 = dicomSummary.TestAndGetValue(DICOM_TAG_NUMBER_OF_TEMPORAL_POSITIONS)) != NULL) | |
404 { | |
405 // Patch for series with temporal positions thanks to Will Ryder | |
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406 int64_t imagesInAcquisition = boost::lexical_cast<int64_t>(value->GetContent()); |
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407 int64_t countTemporalPositions = boost::lexical_cast<int64_t>(value2->GetContent()); |
433 | 408 std::string expected = boost::lexical_cast<std::string>(imagesInAcquisition * countTemporalPositions); |
409 db.SetMetadata(series, MetadataType_Series_ExpectedNumberOfInstances, expected); | |
410 } | |
411 | |
412 else if ((value = dicomSummary.TestAndGetValue(DICOM_TAG_NUMBER_OF_SLICES)) != NULL && | |
413 (value2 = dicomSummary.TestAndGetValue(DICOM_TAG_NUMBER_OF_TIME_SLICES)) != NULL) | |
414 { | |
415 // Support of Cardio-PET images | |
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416 int64_t numberOfSlices = boost::lexical_cast<int64_t>(value->GetContent()); |
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417 int64_t numberOfTimeSlices = boost::lexical_cast<int64_t>(value2->GetContent()); |
433 | 418 std::string expected = boost::lexical_cast<std::string>(numberOfSlices * numberOfTimeSlices); |
419 db.SetMetadata(series, MetadataType_Series_ExpectedNumberOfInstances, expected); | |
420 } | |
421 | |
422 else if ((value = dicomSummary.TestAndGetValue(DICOM_TAG_CARDIAC_NUMBER_OF_IMAGES)) != NULL) | |
423 { | |
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424 db.SetMetadata(series, MetadataType_Series_ExpectedNumberOfInstances, value->GetContent()); |
433 | 425 } |
426 } | |
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427 catch (OrthancException&) |
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428 { |
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429 } |
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430 catch (boost::bad_lexical_cast&) |
433 | 431 { |
432 } | |
433 } | |
434 | |
435 | |
1237 | 436 |
437 | |
1238 | 438 bool ServerIndex::GetMetadataAsInteger(int64_t& result, |
1237 | 439 int64_t id, |
440 MetadataType type) | |
441 { | |
1238 | 442 std::string s; |
1247 | 443 if (!db_.LookupMetadata(s, id, type)) |
1237 | 444 { |
445 return false; | |
446 } | |
447 | |
448 try | |
449 { | |
1238 | 450 result = boost::lexical_cast<int64_t>(s); |
1237 | 451 return true; |
452 } | |
453 catch (boost::bad_lexical_cast&) | |
454 { | |
455 return false; | |
456 } | |
457 } | |
458 | |
459 | |
1297 | 460 void ServerIndex::LogChange(int64_t internalId, |
461 ChangeType changeType, | |
462 ResourceType resourceType, | |
463 const std::string& publicId) | |
464 { | |
465 ServerIndexChange change(changeType, resourceType, publicId); | |
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466 |
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467 if (changeType <= ChangeType_INTERNAL_LastLogged) |
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468 { |
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469 db_.LogChange(internalId, change); |
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470 } |
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471 |
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472 assert(listener_.get() != NULL); |
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473 listener_->SignalChange(change); |
1297 | 474 } |
475 | |
1237 | 476 |
477 uint64_t ServerIndex::IncrementGlobalSequenceInternal(GlobalProperty property) | |
478 { | |
479 std::string oldValue; | |
480 | |
1247 | 481 if (db_.LookupGlobalProperty(oldValue, property)) |
1237 | 482 { |
483 uint64_t oldNumber; | |
484 | |
485 try | |
486 { | |
487 oldNumber = boost::lexical_cast<uint64_t>(oldValue); | |
1247 | 488 db_.SetGlobalProperty(property, boost::lexical_cast<std::string>(oldNumber + 1)); |
1237 | 489 return oldNumber + 1; |
490 } | |
491 catch (boost::bad_lexical_cast&) | |
492 { | |
493 throw OrthancException(ErrorCode_InternalError); | |
494 } | |
495 } | |
496 else | |
497 { | |
498 // Initialize the sequence at "1" | |
1247 | 499 db_.SetGlobalProperty(property, "1"); |
1237 | 500 return 1; |
501 } | |
502 } | |
503 | |
504 | |
505 | |
1299 | 506 int64_t ServerIndex::CreateResource(const std::string& publicId, |
507 ResourceType type) | |
508 { | |
509 int64_t id = db_.CreateResource(publicId, type); | |
510 | |
511 ChangeType changeType; | |
512 switch (type) | |
513 { | |
514 case ResourceType_Patient: | |
515 changeType = ChangeType_NewPatient; | |
516 break; | |
517 | |
518 case ResourceType_Study: | |
519 changeType = ChangeType_NewStudy; | |
520 break; | |
521 | |
522 case ResourceType_Series: | |
523 changeType = ChangeType_NewSeries; | |
524 break; | |
525 | |
526 case ResourceType_Instance: | |
527 changeType = ChangeType_NewInstance; | |
528 break; | |
529 | |
530 default: | |
531 throw OrthancException(ErrorCode_InternalError); | |
532 } | |
533 | |
534 ServerIndexChange change(changeType, type, publicId); | |
535 db_.LogChange(id, change); | |
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536 |
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537 assert(listener_.get() != NULL); |
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538 listener_->SignalChange(change); |
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539 |
1299 | 540 return id; |
541 } | |
542 | |
1286 | 543 |
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544 ServerIndex::ServerIndex(ServerContext& context, |
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545 IDatabaseWrapper& db, |
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546 unsigned int threadSleep) : |
511
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547 done_(false), |
1247 | 548 db_(db), |
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549 maximumStorageSize_(0), |
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550 maximumPatients_(0), |
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551 overwrite_(false) |
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552 { |
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553 listener_.reset(new Listener(context)); |
1247 | 554 db_.SetListener(*listener_); |
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555 |
1247 | 556 currentStorageSize_ = db_.GetTotalCompressedSize(); |
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557 |
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558 // Initial recycling if the parameters have changed since the last |
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559 // execution of Orthanc |
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560 StandaloneRecycling(); |
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561 |
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562 if (db.HasFlushToDisk()) |
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563 { |
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564 flushThread_ = boost::thread(FlushThread, this, threadSleep); |
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565 } |
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566 |
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567 unstableResourcesMonitorThread_ = boost::thread |
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568 (UnstableResourcesMonitorThread, this, threadSleep); |
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569 } |
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570 |
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571 |
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572 |
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573 ServerIndex::~ServerIndex() |
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574 { |
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575 if (!done_) |
511
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576 { |
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577 LOG(ERROR) << "INTERNAL ERROR: ServerIndex::Stop() should be invoked manually to avoid mess in the destruction order!"; |
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578 Stop(); |
511
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579 } |
0 | 580 } |
581 | |
582 | |
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583 |
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584 void ServerIndex::Stop() |
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585 { |
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586 if (!done_) |
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587 { |
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588 done_ = true; |
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589 |
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590 if (db_.HasFlushToDisk() && |
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591 flushThread_.joinable()) |
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592 { |
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593 flushThread_.join(); |
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594 } |
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595 |
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596 if (unstableResourcesMonitorThread_.joinable()) |
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597 { |
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598 unstableResourcesMonitorThread_.join(); |
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599 } |
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600 } |
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601 } |
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602 |
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603 |
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604 |
2188 | 605 void ServerIndex::SetInstanceMetadata(std::map<MetadataType, std::string>& instanceMetadata, |
606 int64_t instance, | |
607 MetadataType metadata, | |
608 const std::string& value) | |
609 { | |
610 db_.SetMetadata(instance, metadata, value); | |
611 instanceMetadata[metadata] = value; | |
612 } | |
613 | |
614 | |
615 | |
1006
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616 StoreStatus ServerIndex::Store(std::map<MetadataType, std::string>& instanceMetadata, |
1822 | 617 DicomInstanceToStore& instanceToStore, |
618 const Attachments& attachments) | |
0 | 619 { |
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620 boost::mutex::scoped_lock lock(mutex_); |
0 | 621 |
1822 | 622 const DicomMap& dicomSummary = instanceToStore.GetSummary(); |
623 const ServerIndex::MetadataMap& metadata = instanceToStore.GetMetadata(); | |
624 | |
1006
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625 instanceMetadata.clear(); |
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626 |
0 | 627 try |
628 { | |
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629 Transaction t(*this); |
0 | 630 |
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631 // Check whether this instance is already stored |
0 | 632 { |
432 | 633 ResourceType type; |
634 int64_t tmp; | |
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635 if (db_.LookupResource(tmp, type, instanceToStore.GetHasher().HashInstance())) |
432 | 636 { |
637 assert(type == ResourceType_Instance); | |
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638 |
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639 if (overwrite_) |
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640 { |
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641 // Overwrite the old instance |
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642 LOG(INFO) << "Overwriting instance: " << instanceToStore.GetHasher().HashInstance(); |
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643 db_.DeleteResource(tmp); |
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644 } |
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645 else |
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646 { |
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647 // Do nothing if the instance already exists |
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648 db_.GetAllMetadata(instanceMetadata, tmp); |
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649 return StoreStatus_AlreadyStored; |
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650 } |
432 | 651 } |
0 | 652 } |
653 | |
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654 // Ensure there is enough room in the storage for the new instance |
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655 uint64_t instanceSize = 0; |
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656 for (Attachments::const_iterator it = attachments.begin(); |
656 | 657 it != attachments.end(); ++it) |
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658 { |
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659 instanceSize += it->GetCompressedSize(); |
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660 } |
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661 |
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662 Recycle(instanceSize, instanceToStore.GetHasher().HashPatient()); |
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663 |
202 | 664 // Create the instance |
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665 int64_t instance = CreateResource(instanceToStore.GetHasher().HashInstance(), ResourceType_Instance); |
2120 | 666 ServerToolbox::StoreMainDicomTags(db_, instance, ResourceType_Instance, dicomSummary); |
202 | 667 |
432 | 668 // Detect up to which level the patient/study/series/instance |
669 // hierarchy must be created | |
670 int64_t patient = -1, study = -1, series = -1; | |
671 bool isNewPatient = false; | |
672 bool isNewStudy = false; | |
673 bool isNewSeries = false; | |
674 | |
0 | 675 { |
432 | 676 ResourceType dummy; |
677 | |
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678 if (db_.LookupResource(series, dummy, instanceToStore.GetHasher().HashSeries())) |
432 | 679 { |
680 assert(dummy == ResourceType_Series); | |
681 // The patient, the study and the series already exist | |
682 | |
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683 bool ok = (db_.LookupResource(patient, dummy, instanceToStore.GetHasher().HashPatient()) && |
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684 db_.LookupResource(study, dummy, instanceToStore.GetHasher().HashStudy())); |
432 | 685 assert(ok); |
686 } | |
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687 else if (db_.LookupResource(study, dummy, instanceToStore.GetHasher().HashStudy())) |
432 | 688 { |
689 assert(dummy == ResourceType_Study); | |
690 | |
691 // New series: The patient and the study already exist | |
692 isNewSeries = true; | |
693 | |
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694 bool ok = db_.LookupResource(patient, dummy, instanceToStore.GetHasher().HashPatient()); |
432 | 695 assert(ok); |
696 } | |
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697 else if (db_.LookupResource(patient, dummy, instanceToStore.GetHasher().HashPatient())) |
432 | 698 { |
699 assert(dummy == ResourceType_Patient); | |
700 | |
701 // New study and series: The patient already exist | |
702 isNewStudy = true; | |
703 isNewSeries = true; | |
704 } | |
705 else | |
706 { | |
707 // New patient, study and series: Nothing exists | |
708 isNewPatient = true; | |
709 isNewStudy = true; | |
710 isNewSeries = true; | |
711 } | |
712 } | |
713 | |
714 // Create the series if needed | |
715 if (isNewSeries) | |
716 { | |
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717 series = CreateResource(instanceToStore.GetHasher().HashSeries(), ResourceType_Series); |
2120 | 718 ServerToolbox::StoreMainDicomTags(db_, series, ResourceType_Series, dicomSummary); |
432 | 719 } |
202 | 720 |
432 | 721 // Create the study if needed |
722 if (isNewStudy) | |
723 { | |
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724 study = CreateResource(instanceToStore.GetHasher().HashStudy(), ResourceType_Study); |
2120 | 725 ServerToolbox::StoreMainDicomTags(db_, study, ResourceType_Study, dicomSummary); |
432 | 726 } |
727 | |
728 // Create the patient if needed | |
729 if (isNewPatient) | |
730 { | |
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|
731 patient = CreateResource(instanceToStore.GetHasher().HashPatient(), ResourceType_Patient); |
2120 | 732 ServerToolbox::StoreMainDicomTags(db_, patient, ResourceType_Patient, dicomSummary); |
432 | 733 } |
202 | 734 |
432 | 735 // Create the parent-to-child links |
1247 | 736 db_.AttachChild(series, instance); |
432 | 737 |
738 if (isNewSeries) | |
739 { | |
1247 | 740 db_.AttachChild(study, series); |
0 | 741 } |
432 | 742 |
743 if (isNewStudy) | |
0 | 744 { |
1247 | 745 db_.AttachChild(patient, study); |
0 | 746 } |
747 | |
432 | 748 // Sanity checks |
749 assert(patient != -1); | |
750 assert(study != -1); | |
751 assert(series != -1); | |
752 assert(instance != -1); | |
753 | |
202 | 754 // Attach the files to the newly created instance |
232
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755 for (Attachments::const_iterator it = attachments.begin(); |
656 | 756 it != attachments.end(); ++it) |
232
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757 { |
1247 | 758 db_.AddAttachment(instance, *it); |
232
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759 } |
202 | 760 |
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761 // Attach the user-specified metadata |
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762 for (MetadataMap::const_iterator |
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763 it = metadata.begin(); it != metadata.end(); ++it) |
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764 { |
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|
765 switch (it->first.first) |
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|
766 { |
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767 case ResourceType_Patient: |
1247 | 768 db_.SetMetadata(patient, it->first.second, it->second); |
1006
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diff
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769 break; |
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770 |
1006
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changeset
|
771 case ResourceType_Study: |
1247 | 772 db_.SetMetadata(study, it->first.second, it->second); |
1006
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773 break; |
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774 |
1006
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|
775 case ResourceType_Series: |
1247 | 776 db_.SetMetadata(series, it->first.second, it->second); |
1006
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777 break; |
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778 |
1006
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779 case ResourceType_Instance: |
2188 | 780 SetInstanceMetadata(instanceMetadata, instance, it->first.second, it->second); |
1006
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diff
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|
781 break; |
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changeset
|
782 |
1006
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|
783 default: |
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784 throw OrthancException(ErrorCode_ParameterOutOfRange); |
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|
785 } |
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|
786 } |
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|
787 |
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DicomInstanceToStore
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parents:
1002
diff
changeset
|
788 // Attach the auto-computed metadata for the patient/study/series levels |
2475
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diff
changeset
|
789 std::string now = SystemToolbox::GetNowIsoString(true /* use UTC time (not local time) */); |
1247 | 790 db_.SetMetadata(series, MetadataType_LastUpdate, now); |
791 db_.SetMetadata(study, MetadataType_LastUpdate, now); | |
792 db_.SetMetadata(patient, MetadataType_LastUpdate, now); | |
1004
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DicomInstanceToStore
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diff
changeset
|
793 |
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|
794 // Attach the auto-computed metadata for the instance level, |
a226e0959d8b
DicomInstanceToStore
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parents:
1002
diff
changeset
|
795 // reflecting these additions into the input metadata map |
2188 | 796 SetInstanceMetadata(instanceMetadata, instance, MetadataType_Instance_ReceptionDate, now); |
2640
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changeset
|
797 SetInstanceMetadata(instanceMetadata, instance, MetadataType_Instance_RemoteAet, |
2664
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|
798 instanceToStore.GetOrigin().GetRemoteAetC()); |
2189
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2188
diff
changeset
|
799 SetInstanceMetadata(instanceMetadata, instance, MetadataType_Instance_Origin, |
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changeset
|
800 EnumerationToString(instanceToStore.GetOrigin().GetRequestOrigin())); |
2726
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changeset
|
801 |
1823
0ef4e6e66b56
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diff
changeset
|
802 { |
2189
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New metadata automatically computed at the instance level: "TransferSyntax"
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diff
changeset
|
803 std::string s; |
2726
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|
804 |
2189
c4b3259c8bce
New metadata automatically computed at the instance level: "TransferSyntax"
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2188
diff
changeset
|
805 if (instanceToStore.LookupTransferSyntax(s)) |
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diff
changeset
|
806 { |
2726
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changeset
|
807 // New in Orthanc 1.2.0 |
2189
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New metadata automatically computed at the instance level: "TransferSyntax"
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2188
diff
changeset
|
808 SetInstanceMetadata(instanceMetadata, instance, MetadataType_Instance_TransferSyntax, s); |
c4b3259c8bce
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diff
changeset
|
809 } |
2726
46061a91c88a
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changeset
|
810 |
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diff
changeset
|
811 if (instanceToStore.GetOrigin().LookupRemoteIp(s)) |
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|
812 { |
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diff
changeset
|
813 // New in Orthanc 1.4.0 |
46061a91c88a
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parents:
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diff
changeset
|
814 SetInstanceMetadata(instanceMetadata, instance, MetadataType_Instance_RemoteIp, s); |
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diff
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|
815 } |
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new metadata (RemoteIP, CalledAET, HttpUsername), "?expand" metadata
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diff
changeset
|
816 |
46061a91c88a
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diff
changeset
|
817 if (instanceToStore.GetOrigin().LookupCalledAet(s)) |
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diff
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|
818 { |
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changeset
|
819 // New in Orthanc 1.4.0 |
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diff
changeset
|
820 SetInstanceMetadata(instanceMetadata, instance, MetadataType_Instance_CalledAet, s); |
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diff
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|
821 } |
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new metadata (RemoteIP, CalledAET, HttpUsername), "?expand" metadata
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diff
changeset
|
822 |
46061a91c88a
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diff
changeset
|
823 if (instanceToStore.GetOrigin().LookupHttpUsername(s)) |
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|
824 { |
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diff
changeset
|
825 // New in Orthanc 1.4.0 |
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Sebastien Jodogne <s.jodogne@gmail.com>
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changeset
|
826 SetInstanceMetadata(instanceMetadata, instance, MetadataType_Instance_HttpUsername, s); |
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new metadata (RemoteIP, CalledAET, HttpUsername), "?expand" metadata
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diff
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|
827 } |
1823
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diff
changeset
|
828 } |
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changeset
|
829 |
202 | 830 const DicomValue* value; |
2208
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New metadata automatically computed at the instance level: "SopClassUid"
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diff
changeset
|
831 if ((value = dicomSummary.TestAndGetValue(DICOM_TAG_SOP_CLASS_UID)) != NULL && |
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changeset
|
832 !value->IsNull() && |
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diff
changeset
|
833 !value->IsBinary()) |
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changeset
|
834 { |
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diff
changeset
|
835 SetInstanceMetadata(instanceMetadata, instance, MetadataType_Instance_SopClassUid, value->GetContent()); |
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|
836 } |
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diff
changeset
|
837 |
202 | 838 if ((value = dicomSummary.TestAndGetValue(DICOM_TAG_INSTANCE_NUMBER)) != NULL || |
839 (value = dicomSummary.TestAndGetValue(DICOM_TAG_IMAGE_INDEX)) != NULL) | |
0 | 840 { |
1737
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diff
changeset
|
841 if (!value->IsNull() && |
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diff
changeset
|
842 !value->IsBinary()) |
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diff
changeset
|
843 { |
2188 | 844 SetInstanceMetadata(instanceMetadata, instance, MetadataType_Instance_IndexInSeries, value->GetContent()); |
1737
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|
845 } |
0 | 846 } |
847 | |
1004
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DicomInstanceToStore
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diff
changeset
|
848 // Check whether the series of this new instance is now completed |
202 | 849 if (isNewSeries) |
850 { | |
1247 | 851 ComputeExpectedNumberOfInstances(db_, series, dicomSummary); |
202 | 852 } |
853 | |
205
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diff
changeset
|
854 SeriesStatus seriesStatus = GetSeriesStatus(series); |
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855 if (seriesStatus == SeriesStatus_Complete) |
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856 { |
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DicomInstanceToStore::GetHasher()
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diff
changeset
|
857 LogChange(series, ChangeType_CompletedSeries, ResourceType_Series, instanceToStore.GetHasher().HashSeries()); |
205
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858 } |
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changeset
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859 |
511
3b735fdf320b
monitoring of stable patients/studies/series
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diff
changeset
|
860 // Mark the parent resources of this instance as unstable |
2898
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DicomInstanceToStore::GetHasher()
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diff
changeset
|
861 MarkAsUnstable(series, ResourceType_Series, instanceToStore.GetHasher().HashSeries()); |
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DicomInstanceToStore::GetHasher()
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changeset
|
862 MarkAsUnstable(study, ResourceType_Study, instanceToStore.GetHasher().HashStudy()); |
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DicomInstanceToStore::GetHasher()
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changeset
|
863 MarkAsUnstable(patient, ResourceType_Patient, instanceToStore.GetHasher().HashPatient()); |
511
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changeset
|
864 |
278
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changeset
|
865 t.Commit(instanceSize); |
268
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diff
changeset
|
866 |
0 | 867 return StoreStatus_Success; |
868 } | |
62 | 869 catch (OrthancException& e) |
0 | 870 { |
1247 | 871 LOG(ERROR) << "EXCEPTION [" << e.What() << "]"; |
0 | 872 } |
873 | |
874 return StoreStatus_Failure; | |
875 } | |
876 | |
877 | |
238 | 878 void ServerIndex::ComputeStatistics(Json::Value& target) |
0 | 879 { |
206
4453a010d0db
flush to disk thread
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205
diff
changeset
|
880 boost::mutex::scoped_lock lock(mutex_); |
238 | 881 target = Json::objectValue; |
0 | 882 |
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883 uint64_t cs = currentStorageSize_; |
1247 | 884 assert(cs == db_.GetTotalCompressedSize()); |
885 uint64_t us = db_.GetTotalUncompressedSize(); | |
440
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886 target["TotalDiskSize"] = boost::lexical_cast<std::string>(cs); |
238 | 887 target["TotalUncompressedSize"] = boost::lexical_cast<std::string>(us); |
1310
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888 target["TotalDiskSizeMB"] = static_cast<unsigned int>(cs / MEGA_BYTES); |
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889 target["TotalUncompressedSizeMB"] = static_cast<unsigned int>(us / MEGA_BYTES); |
238 | 890 |
1247 | 891 target["CountPatients"] = static_cast<unsigned int>(db_.GetResourceCount(ResourceType_Patient)); |
892 target["CountStudies"] = static_cast<unsigned int>(db_.GetResourceCount(ResourceType_Study)); | |
893 target["CountSeries"] = static_cast<unsigned int>(db_.GetResourceCount(ResourceType_Series)); | |
894 target["CountInstances"] = static_cast<unsigned int>(db_.GetResourceCount(ResourceType_Instance)); | |
238 | 895 } |
896 | |
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897 |
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898 |
585 | 899 SeriesStatus ServerIndex::GetSeriesStatus(int64_t id) |
199 | 900 { |
901 // Get the expected number of instances in this series (from the metadata) | |
1238 | 902 int64_t expected; |
903 if (!GetMetadataAsInteger(expected, id, MetadataType_Series_ExpectedNumberOfInstances)) | |
199 | 904 { |
905 return SeriesStatus_Unknown; | |
906 } | |
907 | |
908 // Loop over the instances of this series | |
909 std::list<int64_t> children; | |
1247 | 910 db_.GetChildrenInternalId(children, id); |
199 | 911 |
1238 | 912 std::set<int64_t> instances; |
199 | 913 for (std::list<int64_t>::const_iterator |
656 | 914 it = children.begin(); it != children.end(); ++it) |
199 | 915 { |
916 // Get the index of this instance in the series | |
1238 | 917 int64_t index; |
918 if (!GetMetadataAsInteger(index, *it, MetadataType_Instance_IndexInSeries)) | |
199 | 919 { |
920 return SeriesStatus_Unknown; | |
921 } | |
922 | |
656 | 923 if (!(index > 0 && index <= expected)) |
199 | 924 { |
925 // Out-of-range instance index | |
926 return SeriesStatus_Inconsistent; | |
927 } | |
928 | |
929 if (instances.find(index) != instances.end()) | |
930 { | |
931 // Twice the same instance index | |
932 return SeriesStatus_Inconsistent; | |
933 } | |
934 | |
935 instances.insert(index); | |
936 } | |
937 | |
1238 | 938 if (static_cast<int64_t>(instances.size()) == expected) |
199 | 939 { |
940 return SeriesStatus_Complete; | |
941 } | |
942 else | |
943 { | |
944 return SeriesStatus_Missing; | |
945 } | |
946 } | |
947 | |
948 | |
202 | 949 void ServerIndex::MainDicomTagsToJson(Json::Value& target, |
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950 int64_t resourceId, |
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951 ResourceType resourceType) |
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952 { |
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953 DicomMap tags; |
1247 | 954 db_.GetMainDicomTags(tags, resourceId); |
1676
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955 |
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956 if (resourceType == ResourceType_Study) |
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957 { |
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958 DicomMap t1, t2; |
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959 tags.ExtractStudyInformation(t1); |
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960 tags.ExtractPatientInformation(t2); |
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961 |
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962 target["MainDicomTags"] = Json::objectValue; |
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963 FromDcmtkBridge::ToJson(target["MainDicomTags"], t1, true); |
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964 |
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965 target["PatientMainDicomTags"] = Json::objectValue; |
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966 FromDcmtkBridge::ToJson(target["PatientMainDicomTags"], t2, true); |
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967 } |
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968 else |
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969 { |
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970 target["MainDicomTags"] = Json::objectValue; |
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971 FromDcmtkBridge::ToJson(target["MainDicomTags"], tags, true); |
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972 } |
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973 } |
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974 |
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975 bool ServerIndex::LookupResource(Json::Value& result, |
199 | 976 const std::string& publicId, |
977 ResourceType expectedType) | |
198
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978 { |
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979 result = Json::objectValue; |
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980 |
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981 boost::mutex::scoped_lock lock(mutex_); |
199 | 982 |
198
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983 // Lookup for the requested resource |
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984 int64_t id; |
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985 ResourceType type; |
1294 | 986 if (!db_.LookupResource(id, type, publicId) || |
199 | 987 type != expectedType) |
198
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988 { |
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989 return false; |
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990 } |
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991 |
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992 // Find the parent resource (if it exists) |
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993 if (type != ResourceType_Patient) |
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994 { |
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995 int64_t parentId; |
1247 | 996 if (!db_.LookupParent(parentId, id)) |
198
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997 { |
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998 throw OrthancException(ErrorCode_InternalError); |
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999 } |
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1000 |
1247 | 1001 std::string parent = db_.GetPublicId(parentId); |
198
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1002 |
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1003 switch (type) |
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1004 { |
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1005 case ResourceType_Study: |
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1006 result["ParentPatient"] = parent; |
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1007 break; |
198
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1008 |
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1009 case ResourceType_Series: |
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1010 result["ParentStudy"] = parent; |
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1011 break; |
198
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1012 |
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1013 case ResourceType_Instance: |
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1014 result["ParentSeries"] = parent; |
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1015 break; |
198
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1016 |
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1017 default: |
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1018 throw OrthancException(ErrorCode_InternalError); |
198
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1019 } |
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1020 } |
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1021 |
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1022 // List the children resources |
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1023 std::list<std::string> children; |
1247 | 1024 db_.GetChildrenPublicId(children, id); |
198
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1025 |
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1026 if (type != ResourceType_Instance) |
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1027 { |
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1028 Json::Value c = Json::arrayValue; |
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1029 |
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1030 for (std::list<std::string>::const_iterator |
656 | 1031 it = children.begin(); it != children.end(); ++it) |
198
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1032 { |
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1033 c.append(*it); |
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1034 } |
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1035 |
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1036 switch (type) |
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1037 { |
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1038 case ResourceType_Patient: |
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1039 result["Studies"] = c; |
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1040 break; |
198
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1041 |
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1042 case ResourceType_Study: |
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1043 result["Series"] = c; |
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1044 break; |
198
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1045 |
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1046 case ResourceType_Series: |
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1047 result["Instances"] = c; |
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1048 break; |
198
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1049 |
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1050 default: |
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1051 throw OrthancException(ErrorCode_InternalError); |
198
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1052 } |
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1053 } |
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1054 |
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1055 // Set the resource type |
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1056 switch (type) |
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diff
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|
1057 { |
269
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|
1058 case ResourceType_Patient: |
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diff
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|
1059 result["Type"] = "Patient"; |
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268
diff
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|
1060 break; |
198
663cc6c46d0a
before refactoring of ServerIndex::GetXXX
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197
diff
changeset
|
1061 |
269
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268
diff
changeset
|
1062 case ResourceType_Study: |
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diff
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|
1063 result["Type"] = "Study"; |
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diff
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|
1064 break; |
199 | 1065 |
269
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268
diff
changeset
|
1066 case ResourceType_Series: |
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diff
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|
1067 { |
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268
diff
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|
1068 result["Type"] = "Series"; |
434
ccf3a0a43dac
EnumerationDictionary
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
433
diff
changeset
|
1069 result["Status"] = EnumerationToString(GetSeriesStatus(id)); |
198
663cc6c46d0a
before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
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197
diff
changeset
|
1070 |
1238 | 1071 int64_t i; |
1237 | 1072 if (GetMetadataAsInteger(i, id, MetadataType_Series_ExpectedNumberOfInstances)) |
1238 | 1073 result["ExpectedNumberOfInstances"] = static_cast<int>(i); |
269
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diff
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|
1074 else |
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268
diff
changeset
|
1075 result["ExpectedNumberOfInstances"] = Json::nullValue; |
200
9c58b2b03cf0
refactoring of read operations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1076 |
269
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268
diff
changeset
|
1077 break; |
200
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
199
diff
changeset
|
1078 } |
9c58b2b03cf0
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diff
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|
1079 |
269
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diff
changeset
|
1080 case ResourceType_Instance: |
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diff
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|
1081 { |
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diff
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|
1082 result["Type"] = "Instance"; |
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diff
changeset
|
1083 |
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parents:
268
diff
changeset
|
1084 FileInfo attachment; |
1247 | 1085 if (!db_.LookupAttachment(attachment, id, FileContentType_Dicom)) |
269
f6fdf5abe751
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diff
changeset
|
1086 { |
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diff
changeset
|
1087 throw OrthancException(ErrorCode_InternalError); |
f6fdf5abe751
recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
268
diff
changeset
|
1088 } |
200
9c58b2b03cf0
refactoring of read operations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
199
diff
changeset
|
1089 |
269
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parents:
268
diff
changeset
|
1090 result["FileSize"] = static_cast<unsigned int>(attachment.GetUncompressedSize()); |
f6fdf5abe751
recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
268
diff
changeset
|
1091 result["FileUuid"] = attachment.GetUuid(); |
200
9c58b2b03cf0
refactoring of read operations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
199
diff
changeset
|
1092 |
1238 | 1093 int64_t i; |
1237 | 1094 if (GetMetadataAsInteger(i, id, MetadataType_Instance_IndexInSeries)) |
1238 | 1095 result["IndexInSeries"] = static_cast<int>(i); |
269
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parents:
268
diff
changeset
|
1096 else |
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Sebastien Jodogne <s.jodogne@gmail.com>
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268
diff
changeset
|
1097 result["IndexInSeries"] = Json::nullValue; |
198
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before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
197
diff
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|
1098 |
269
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diff
changeset
|
1099 break; |
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parents:
268
diff
changeset
|
1100 } |
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268
diff
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|
1101 |
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diff
changeset
|
1102 default: |
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268
diff
changeset
|
1103 throw OrthancException(ErrorCode_InternalError); |
198
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
197
diff
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|
1104 } |
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diff
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|
1105 |
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diff
changeset
|
1106 // Record the remaining information |
663cc6c46d0a
before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
197
diff
changeset
|
1107 result["ID"] = publicId; |
1668
de1413733c97
reconstructing main dicom tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1555
diff
changeset
|
1108 MainDicomTagsToJson(result, id, type); |
198
663cc6c46d0a
before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
197
diff
changeset
|
1109 |
315 | 1110 std::string tmp; |
1111 | |
1247 | 1112 if (db_.LookupMetadata(tmp, id, MetadataType_AnonymizedFrom)) |
1236 | 1113 { |
315 | 1114 result["AnonymizedFrom"] = tmp; |
1236 | 1115 } |
315 | 1116 |
1247 | 1117 if (db_.LookupMetadata(tmp, id, MetadataType_ModifiedFrom)) |
1236 | 1118 { |
315 | 1119 result["ModifiedFrom"] = tmp; |
1236 | 1120 } |
315 | 1121 |
511
3b735fdf320b
monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
440
diff
changeset
|
1122 if (type == ResourceType_Patient || |
3b735fdf320b
monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
440
diff
changeset
|
1123 type == ResourceType_Study || |
3b735fdf320b
monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
440
diff
changeset
|
1124 type == ResourceType_Series) |
3b735fdf320b
monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
440
diff
changeset
|
1125 { |
3b735fdf320b
monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
440
diff
changeset
|
1126 result["IsStable"] = !unstableResources_.Contains(id); |
1148
ac36589f699e
LastUpdate metadata is now always returned for patients, studies and series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1139
diff
changeset
|
1127 |
1247 | 1128 if (db_.LookupMetadata(tmp, id, MetadataType_LastUpdate)) |
1236 | 1129 { |
1148
ac36589f699e
LastUpdate metadata is now always returned for patients, studies and series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1139
diff
changeset
|
1130 result["LastUpdate"] = tmp; |
1236 | 1131 } |
511
3b735fdf320b
monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
440
diff
changeset
|
1132 } |
3b735fdf320b
monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1133 |
198
663cc6c46d0a
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diff
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|
1134 return true; |
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diff
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|
1135 } |
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|
1136 |
0 | 1137 |
232
5368bbe813cf
refactoring of attachments
Sebastien Jodogne <s.jodogne@gmail.com>
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231
diff
changeset
|
1138 bool ServerIndex::LookupAttachment(FileInfo& attachment, |
5368bbe813cf
refactoring of attachments
Sebastien Jodogne <s.jodogne@gmail.com>
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231
diff
changeset
|
1139 const std::string& instanceUuid, |
233 | 1140 FileContentType contentType) |
0 | 1141 { |
206
4453a010d0db
flush to disk thread
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
205
diff
changeset
|
1142 boost::mutex::scoped_lock lock(mutex_); |
0 | 1143 |
193
a1b9d1e1497b
failed attempt to compile with linux standard base
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
192
diff
changeset
|
1144 int64_t id; |
a1b9d1e1497b
failed attempt to compile with linux standard base
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
192
diff
changeset
|
1145 ResourceType type; |
1294 | 1146 if (!db_.LookupResource(id, type, instanceUuid)) |
192
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refactoring getfile
Sebastien Jodogne <s.jodogne@gmail.com>
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191
diff
changeset
|
1147 { |
1113
ba5c0908600c
Refactoring of HttpOutput ("Content-Length" header is now always sent)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1102
diff
changeset
|
1148 throw OrthancException(ErrorCode_UnknownResource); |
192
c56dc32266e0
refactoring getfile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
191
diff
changeset
|
1149 } |
193
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parents:
192
diff
changeset
|
1150 |
1247 | 1151 if (db_.LookupAttachment(attachment, id, contentType)) |
232
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refactoring of attachments
Sebastien Jodogne <s.jodogne@gmail.com>
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231
diff
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|
1152 { |
233 | 1153 assert(attachment.GetContentType() == contentType); |
232
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231
diff
changeset
|
1154 return true; |
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231
diff
changeset
|
1155 } |
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Sebastien Jodogne <s.jodogne@gmail.com>
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231
diff
changeset
|
1156 else |
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Sebastien Jodogne <s.jodogne@gmail.com>
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231
diff
changeset
|
1157 { |
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Sebastien Jodogne <s.jodogne@gmail.com>
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231
diff
changeset
|
1158 return false; |
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231
diff
changeset
|
1159 } |
192
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191
diff
changeset
|
1160 } |
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191
diff
changeset
|
1161 |
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191
diff
changeset
|
1162 |
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191
diff
changeset
|
1163 |
1354 | 1164 void ServerIndex::GetAllUuids(std::list<std::string>& target, |
190 | 1165 ResourceType resourceType) |
0 | 1166 { |
1357 | 1167 boost::mutex::scoped_lock lock(mutex_); |
1168 db_.GetAllPublicIds(target, resourceType); | |
0 | 1169 } |
1170 | |
1171 | |
1509
0586ed8897f1
limit and since arguments while retrieving DICOM resources in the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
1172 void ServerIndex::GetAllUuids(std::list<std::string>& target, |
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limit and since arguments while retrieving DICOM resources in the REST API
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diff
changeset
|
1173 ResourceType resourceType, |
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diff
changeset
|
1174 size_t since, |
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parents:
1486
diff
changeset
|
1175 size_t limit) |
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diff
changeset
|
1176 { |
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limit and since arguments while retrieving DICOM resources in the REST API
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diff
changeset
|
1177 if (limit == 0) |
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limit and since arguments while retrieving DICOM resources in the REST API
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diff
changeset
|
1178 { |
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parents:
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diff
changeset
|
1179 target.clear(); |
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diff
changeset
|
1180 return; |
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limit and since arguments while retrieving DICOM resources in the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
1181 } |
0586ed8897f1
limit and since arguments while retrieving DICOM resources in the REST API
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diff
changeset
|
1182 |
0586ed8897f1
limit and since arguments while retrieving DICOM resources in the REST API
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1486
diff
changeset
|
1183 boost::mutex::scoped_lock lock(mutex_); |
0586ed8897f1
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
1184 db_.GetAllPublicIds(target, resourceType, since, limit); |
0586ed8897f1
limit and since arguments while retrieving DICOM resources in the REST API
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diff
changeset
|
1185 } |
0586ed8897f1
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diff
changeset
|
1186 |
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diff
changeset
|
1187 |
1244 | 1188 template <typename T> |
1189 static void FormatLog(Json::Value& target, | |
1190 const std::list<T>& log, | |
1191 const std::string& name, | |
1192 bool done, | |
1193 int64_t since) | |
1240 | 1194 { |
1195 Json::Value items = Json::arrayValue; | |
1244 | 1196 for (typename std::list<T>::const_iterator |
1304 | 1197 it = log.begin(); it != log.end(); ++it) |
1240 | 1198 { |
1199 Json::Value item; | |
1200 it->Format(item); | |
1201 items.append(item); | |
1202 } | |
1203 | |
1204 target = Json::objectValue; | |
1244 | 1205 target[name] = items; |
1240 | 1206 target["Done"] = done; |
1207 | |
1305 | 1208 int64_t last = (log.empty() ? since : log.back().GetSeq()); |
1240 | 1209 target["Last"] = static_cast<int>(last); |
1210 } | |
1211 | |
1212 | |
1247 | 1213 void ServerIndex::GetChanges(Json::Value& target, |
204 | 1214 int64_t since, |
0 | 1215 unsigned int maxResults) |
1216 { | |
1240 | 1217 std::list<ServerIndexChange> changes; |
1218 bool done; | |
1219 | |
1220 { | |
1221 boost::mutex::scoped_lock lock(mutex_); | |
2717
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fix missing transaction
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diff
changeset
|
1222 |
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diff
changeset
|
1223 // Fix wrt. Orthanc <= 1.3.2: A transaction was missing, as |
d33659c28c6b
fix missing transaction
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2668
diff
changeset
|
1224 // "GetLastChange()" involves calls to "GetPublicId()" |
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fix missing transaction
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diff
changeset
|
1225 Transaction transaction(*this); |
1247 | 1226 db_.GetChanges(changes, done, since, maxResults); |
2717
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fix missing transaction
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2668
diff
changeset
|
1227 transaction.Commit(0); |
1240 | 1228 } |
1229 | |
1244 | 1230 FormatLog(target, changes, "Changes", done, since); |
237
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last change and export
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parents:
233
diff
changeset
|
1231 } |
0 | 1232 |
1240 | 1233 |
1247 | 1234 void ServerIndex::GetLastChange(Json::Value& target) |
237
16a4ac70bd8a
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233
diff
changeset
|
1235 { |
1240 | 1236 std::list<ServerIndexChange> changes; |
1237 | |
1238 { | |
1239 boost::mutex::scoped_lock lock(mutex_); | |
2717
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diff
changeset
|
1240 |
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2668
diff
changeset
|
1241 // Fix wrt. Orthanc <= 1.3.2: A transaction was missing, as |
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1242 // "GetLastChange()" involves calls to "GetPublicId()" |
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1243 Transaction transaction(*this); |
1247 | 1244 db_.GetLastChange(changes); |
2717
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1245 transaction.Commit(0); |
1240 | 1246 } |
1247 | |
1244 | 1248 FormatLog(target, changes, "Changes", true, 0); |
0 | 1249 } |
231 | 1250 |
1240 | 1251 |
231 | 1252 void ServerIndex::LogExportedResource(const std::string& publicId, |
1253 const std::string& remoteModality) | |
1254 { | |
1255 boost::mutex::scoped_lock lock(mutex_); | |
1310
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1256 Transaction transaction(*this); |
231 | 1257 |
1258 int64_t id; | |
1259 ResourceType type; | |
1294 | 1260 if (!db_.LookupResource(id, type, publicId)) |
231 | 1261 { |
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1262 throw OrthancException(ErrorCode_InexistentItem); |
231 | 1263 } |
1264 | |
1265 std::string patientId; | |
1266 std::string studyInstanceUid; | |
1267 std::string seriesInstanceUid; | |
1268 std::string sopInstanceUid; | |
1269 | |
1270 int64_t currentId = id; | |
1271 ResourceType currentType = type; | |
1272 | |
1273 // Iteratively go up inside the patient/study/series/instance hierarchy | |
1274 bool done = false; | |
1275 while (!done) | |
1276 { | |
1277 DicomMap map; | |
1247 | 1278 db_.GetMainDicomTags(map, currentId); |
231 | 1279 |
1280 switch (currentType) | |
1281 { | |
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1282 case ResourceType_Patient: |
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1283 if (map.HasTag(DICOM_TAG_PATIENT_ID)) |
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1284 { |
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1285 patientId = map.GetValue(DICOM_TAG_PATIENT_ID).GetContent(); |
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1286 } |
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1287 done = true; |
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1288 break; |
231 | 1289 |
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1290 case ResourceType_Study: |
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1291 if (map.HasTag(DICOM_TAG_STUDY_INSTANCE_UID)) |
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1292 { |
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1293 studyInstanceUid = map.GetValue(DICOM_TAG_STUDY_INSTANCE_UID).GetContent(); |
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1294 } |
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1295 currentType = ResourceType_Patient; |
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1296 break; |
231 | 1297 |
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1298 case ResourceType_Series: |
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1299 if (map.HasTag(DICOM_TAG_SERIES_INSTANCE_UID)) |
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1300 { |
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1301 seriesInstanceUid = map.GetValue(DICOM_TAG_SERIES_INSTANCE_UID).GetContent(); |
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1302 } |
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1303 currentType = ResourceType_Study; |
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1304 break; |
231 | 1305 |
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1306 case ResourceType_Instance: |
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1307 if (map.HasTag(DICOM_TAG_SOP_INSTANCE_UID)) |
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1308 { |
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1309 sopInstanceUid = map.GetValue(DICOM_TAG_SOP_INSTANCE_UID).GetContent(); |
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1310 } |
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1311 currentType = ResourceType_Series; |
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1312 break; |
231 | 1313 |
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1314 default: |
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1315 throw OrthancException(ErrorCode_InternalError); |
231 | 1316 } |
1317 | |
1318 // If we have not reached the Patient level, find the parent of | |
1319 // the current resource | |
1320 if (!done) | |
1321 { | |
1247 | 1322 bool ok = db_.LookupParent(currentId, currentId); |
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1323 assert(ok); |
231 | 1324 } |
1325 } | |
1326 | |
1246 | 1327 ExportedResource resource(-1, |
1328 type, | |
1329 publicId, | |
1330 remoteModality, | |
2475
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1331 SystemToolbox::GetNowIsoString(true /* use UTC time (not local time) */), |
1246 | 1332 patientId, |
1333 studyInstanceUid, | |
1334 seriesInstanceUid, | |
1335 sopInstanceUid); | |
1310
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1336 |
1247 | 1337 db_.LogExportedResource(resource); |
1310
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1338 transaction.Commit(0); |
231 | 1339 } |
1340 | |
1341 | |
1247 | 1342 void ServerIndex::GetExportedResources(Json::Value& target, |
231 | 1343 int64_t since, |
1344 unsigned int maxResults) | |
1345 { | |
1244 | 1346 std::list<ExportedResource> exported; |
1347 bool done; | |
1348 | |
1349 { | |
1350 boost::mutex::scoped_lock lock(mutex_); | |
1247 | 1351 db_.GetExportedResources(exported, done, since, maxResults); |
1244 | 1352 } |
1353 | |
1354 FormatLog(target, exported, "Exports", done, since); | |
231 | 1355 } |
237
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1356 |
1244 | 1357 |
1247 | 1358 void ServerIndex::GetLastExportedResource(Json::Value& target) |
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1359 { |
1244 | 1360 std::list<ExportedResource> exported; |
1361 | |
1362 { | |
1363 boost::mutex::scoped_lock lock(mutex_); | |
1247 | 1364 db_.GetLastExportedResource(exported); |
1244 | 1365 } |
1366 | |
1367 FormatLog(target, exported, "Exports", true, 0); | |
237
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1368 } |
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1369 |
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1370 |
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1371 bool ServerIndex::IsRecyclingNeeded(uint64_t instanceSize) |
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1372 { |
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1373 if (maximumStorageSize_ != 0) |
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1374 { |
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1375 uint64_t currentSize = currentStorageSize_ - listener_->GetSizeOfFilesToRemove(); |
1247 | 1376 assert(db_.GetTotalCompressedSize() == currentSize); |
278
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1377 |
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1378 if (currentSize + instanceSize > maximumStorageSize_) |
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1379 { |
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1380 return true; |
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1381 } |
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1382 } |
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1383 |
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1384 if (maximumPatients_ != 0) |
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1385 { |
1247 | 1386 uint64_t patientCount = db_.GetResourceCount(ResourceType_Patient); |
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1387 if (patientCount > maximumPatients_) |
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1388 { |
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1389 return true; |
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1390 } |
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1391 } |
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1392 |
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1393 return false; |
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1394 } |
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1395 |
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1396 |
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1397 void ServerIndex::Recycle(uint64_t instanceSize, |
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1398 const std::string& newPatientId) |
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1399 { |
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1400 if (!IsRecyclingNeeded(instanceSize)) |
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1401 { |
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1402 return; |
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1403 } |
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1404 |
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1405 // Check whether other DICOM instances from this patient are |
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1406 // already stored |
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1407 int64_t patientToAvoid; |
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1408 ResourceType type; |
1294 | 1409 bool hasPatientToAvoid = db_.LookupResource(patientToAvoid, type, newPatientId); |
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1410 |
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1411 if (hasPatientToAvoid && type != ResourceType_Patient) |
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1412 { |
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1413 throw OrthancException(ErrorCode_InternalError); |
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1414 } |
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1415 |
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1416 // Iteratively select patient to remove until there is enough |
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1417 // space in the DICOM store |
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1418 int64_t patientToRecycle; |
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1419 while (true) |
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1420 { |
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1421 // If other instances of this patient are already in the store, |
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1422 // we must avoid to recycle them |
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1423 bool ok = hasPatientToAvoid ? |
1247 | 1424 db_.SelectPatientToRecycle(patientToRecycle, patientToAvoid) : |
1425 db_.SelectPatientToRecycle(patientToRecycle); | |
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1426 |
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1427 if (!ok) |
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1428 { |
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1429 throw OrthancException(ErrorCode_FullStorage); |
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1430 } |
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1431 |
1331
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1432 VLOG(1) << "Recycling one patient"; |
1247 | 1433 db_.DeleteResource(patientToRecycle); |
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1434 |
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1435 if (!IsRecyclingNeeded(instanceSize)) |
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1436 { |
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1437 // OK, we're done |
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1438 break; |
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1439 } |
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1440 } |
268
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1441 } |
269
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1442 |
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1443 void ServerIndex::SetMaximumPatientCount(unsigned int count) |
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1444 { |
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1445 boost::mutex::scoped_lock lock(mutex_); |
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1446 maximumPatients_ = count; |
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1447 |
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1448 if (count == 0) |
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|
1449 { |
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1450 LOG(WARNING) << "No limit on the number of stored patients"; |
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1451 } |
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1452 else |
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|
1453 { |
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1454 LOG(WARNING) << "At most " << count << " patients will be stored"; |
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1455 } |
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|
1456 |
269
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|
1457 StandaloneRecycling(); |
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1458 } |
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1459 |
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1460 void ServerIndex::SetMaximumStorageSize(uint64_t size) |
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|
1461 { |
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1462 boost::mutex::scoped_lock lock(mutex_); |
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|
1463 maximumStorageSize_ = size; |
270
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1464 |
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1465 if (size == 0) |
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|
1466 { |
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|
1467 LOG(WARNING) << "No limit on the size of the storage area"; |
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|
1468 } |
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|
1469 else |
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diff
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|
1470 { |
440
23e5b35e3c5c
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diff
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|
1471 LOG(WARNING) << "At most " << (size / MEGA_BYTES) << "MB will be used for the storage area"; |
270
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|
1472 } |
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|
1473 |
269
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|
1474 StandaloneRecycling(); |
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1475 } |
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1476 |
2825
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diff
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|
1477 void ServerIndex::SetOverwriteInstances(bool overwrite) |
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New configuration option "OverwriteInstances" to choose how duplicate SOPInstanceUID are handled
Sebastien Jodogne <s.jodogne@gmail.com>
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2726
diff
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|
1478 { |
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New configuration option "OverwriteInstances" to choose how duplicate SOPInstanceUID are handled
Sebastien Jodogne <s.jodogne@gmail.com>
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2726
diff
changeset
|
1479 boost::mutex::scoped_lock lock(mutex_); |
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New configuration option "OverwriteInstances" to choose how duplicate SOPInstanceUID are handled
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2726
diff
changeset
|
1480 overwrite_ = overwrite; |
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New configuration option "OverwriteInstances" to choose how duplicate SOPInstanceUID are handled
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2726
diff
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|
1481 } |
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Sebastien Jodogne <s.jodogne@gmail.com>
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2726
diff
changeset
|
1482 |
8aa6aef11b70
New configuration option "OverwriteInstances" to choose how duplicate SOPInstanceUID are handled
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diff
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|
1483 |
272
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diff
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|
1484 void ServerIndex::StandaloneRecycling() |
269
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|
1485 { |
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1486 // WARNING: No mutex here, do not include this as a public method |
278
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diff
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|
1487 Transaction t(*this); |
269
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|
1488 Recycle(0, ""); |
278
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diff
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|
1489 t.Commit(0); |
269
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|
1490 } |
272
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diff
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|
1491 |
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diff
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|
1492 |
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diff
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|
1493 bool ServerIndex::IsProtectedPatient(const std::string& publicId) |
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diff
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|
1494 { |
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diff
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|
1495 boost::mutex::scoped_lock lock(mutex_); |
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diff
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|
1496 |
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diff
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|
1497 // Lookup for the requested resource |
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diff
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|
1498 int64_t id; |
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diff
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|
1499 ResourceType type; |
1294 | 1500 if (!db_.LookupResource(id, type, publicId) || |
272
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|
1501 type != ResourceType_Patient) |
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diff
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|
1502 { |
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|
1503 throw OrthancException(ErrorCode_ParameterOutOfRange); |
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diff
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|
1504 } |
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diff
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1505 |
1247 | 1506 return db_.IsProtectedPatient(id); |
272
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diff
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|
1507 } |
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diff
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|
1508 |
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diff
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|
1509 |
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|
1510 void ServerIndex::SetProtectedPatient(const std::string& publicId, |
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diff
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|
1511 bool isProtected) |
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diff
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|
1512 { |
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diff
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|
1513 boost::mutex::scoped_lock lock(mutex_); |
1310
61ce8147f30d
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diff
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|
1514 Transaction transaction(*this); |
272
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|
1515 |
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diff
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|
1516 // Lookup for the requested resource |
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|
1517 int64_t id; |
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diff
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|
1518 ResourceType type; |
1294 | 1519 if (!db_.LookupResource(id, type, publicId) || |
272
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|
1520 type != ResourceType_Patient) |
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diff
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|
1521 { |
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|
1522 throw OrthancException(ErrorCode_ParameterOutOfRange); |
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|
1523 } |
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1524 |
1247 | 1525 db_.SetProtectedPatient(id, isProtected); |
1310
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|
1526 transaction.Commit(0); |
272
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diff
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|
1527 |
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|
1528 if (isProtected) |
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|
1529 LOG(INFO) << "Patient " << publicId << " has been protected"; |
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|
1530 else |
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|
1531 LOG(INFO) << "Patient " << publicId << " has been unprotected"; |
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1532 } |
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1533 |
304 | 1534 |
714
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changeset
|
1535 void ServerIndex::GetChildren(std::list<std::string>& result, |
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changeset
|
1536 const std::string& publicId) |
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changeset
|
1537 { |
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changeset
|
1538 result.clear(); |
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changeset
|
1539 |
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changeset
|
1540 boost::mutex::scoped_lock lock(mutex_); |
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changeset
|
1541 |
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changeset
|
1542 ResourceType type; |
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diff
changeset
|
1543 int64_t resource; |
1294 | 1544 if (!db_.LookupResource(resource, type, publicId)) |
714
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changeset
|
1545 { |
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changeset
|
1546 throw OrthancException(ErrorCode_UnknownResource); |
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|
1547 } |
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diff
changeset
|
1548 |
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diff
changeset
|
1549 if (type == ResourceType_Instance) |
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diff
changeset
|
1550 { |
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diff
changeset
|
1551 // An instance cannot have a child |
6a1dbba0cca7
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diff
changeset
|
1552 throw OrthancException(ErrorCode_BadParameterType); |
6a1dbba0cca7
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|
1553 } |
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diff
changeset
|
1554 |
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diff
changeset
|
1555 std::list<int64_t> tmp; |
1247 | 1556 db_.GetChildrenInternalId(tmp, resource); |
714
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diff
changeset
|
1557 |
6a1dbba0cca7
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diff
changeset
|
1558 for (std::list<int64_t>::const_iterator |
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diff
changeset
|
1559 it = tmp.begin(); it != tmp.end(); ++it) |
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1560 { |
1247 | 1561 result.push_back(db_.GetPublicId(*it)); |
714
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1562 } |
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1563 } |
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1564 |
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1565 |
304 | 1566 void ServerIndex::GetChildInstances(std::list<std::string>& result, |
1567 const std::string& publicId) | |
1568 { | |
1569 result.clear(); | |
1570 | |
1571 boost::mutex::scoped_lock lock(mutex_); | |
1572 | |
1573 ResourceType type; | |
1574 int64_t top; | |
1294 | 1575 if (!db_.LookupResource(top, type, publicId)) |
304 | 1576 { |
1577 throw OrthancException(ErrorCode_UnknownResource); | |
1578 } | |
1579 | |
1580 if (type == ResourceType_Instance) | |
1581 { | |
1582 // The resource is already an instance: Do not go down the hierarchy | |
1583 result.push_back(publicId); | |
1584 return; | |
1585 } | |
1586 | |
1587 std::stack<int64_t> toExplore; | |
1588 toExplore.push(top); | |
1589 | |
1590 std::list<int64_t> tmp; | |
1591 | |
1592 while (!toExplore.empty()) | |
1593 { | |
1594 // Get the internal ID of the current resource | |
1595 int64_t resource = toExplore.top(); | |
1596 toExplore.pop(); | |
1597 | |
1247 | 1598 if (db_.GetResourceType(resource) == ResourceType_Instance) |
304 | 1599 { |
1247 | 1600 result.push_back(db_.GetPublicId(resource)); |
304 | 1601 } |
1602 else | |
1603 { | |
1604 // Tag all the children of this resource as to be explored | |
1247 | 1605 db_.GetChildrenInternalId(tmp, resource); |
304 | 1606 for (std::list<int64_t>::const_iterator |
656 | 1607 it = tmp.begin(); it != tmp.end(); ++it) |
304 | 1608 { |
1609 toExplore.push(*it); | |
1610 } | |
1611 } | |
1612 } | |
1613 } | |
1614 | |
306
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1615 |
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1616 void ServerIndex::SetMetadata(const std::string& publicId, |
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1617 MetadataType type, |
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1618 const std::string& value) |
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1619 { |
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1620 boost::mutex::scoped_lock lock(mutex_); |
1773
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1621 Transaction t(*this); |
306
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1622 |
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1623 ResourceType rtype; |
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1624 int64_t id; |
1294 | 1625 if (!db_.LookupResource(id, rtype, publicId)) |
306
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1626 { |
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1627 throw OrthancException(ErrorCode_UnknownResource); |
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1628 } |
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1629 |
1247 | 1630 db_.SetMetadata(id, type, value); |
1773
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1631 |
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1632 if (IsUserMetadata(type)) |
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1633 { |
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1634 LogChange(id, ChangeType_UpdatedMetadata, rtype, publicId); |
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1635 } |
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1636 |
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1637 t.Commit(0); |
306
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1638 } |
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1639 |
438 | 1640 |
1641 void ServerIndex::DeleteMetadata(const std::string& publicId, | |
1642 MetadataType type) | |
1643 { | |
1644 boost::mutex::scoped_lock lock(mutex_); | |
1773
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|
1645 Transaction t(*this); |
438 | 1646 |
1647 ResourceType rtype; | |
1648 int64_t id; | |
1294 | 1649 if (!db_.LookupResource(id, rtype, publicId)) |
438 | 1650 { |
1651 throw OrthancException(ErrorCode_UnknownResource); | |
1652 } | |
1653 | |
1247 | 1654 db_.DeleteMetadata(id, type); |
1773
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1655 |
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1656 if (IsUserMetadata(type)) |
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1657 { |
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1658 LogChange(id, ChangeType_UpdatedMetadata, rtype, publicId); |
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|
1659 } |
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|
1660 |
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|
1661 t.Commit(0); |
438 | 1662 } |
1663 | |
1664 | |
306
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1665 bool ServerIndex::LookupMetadata(std::string& target, |
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1666 const std::string& publicId, |
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1667 MetadataType type) |
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|
1668 { |
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|
1669 boost::mutex::scoped_lock lock(mutex_); |
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|
1670 |
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|
1671 ResourceType rtype; |
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|
1672 int64_t id; |
1294 | 1673 if (!db_.LookupResource(id, rtype, publicId)) |
306
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|
1674 { |
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|
1675 throw OrthancException(ErrorCode_UnknownResource); |
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|
1676 } |
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1677 |
1247 | 1678 return db_.LookupMetadata(target, id, type); |
306
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1679 } |
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1680 |
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1681 |
739 | 1682 void ServerIndex::ListAvailableMetadata(std::list<MetadataType>& target, |
436
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|
1683 const std::string& publicId) |
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|
1684 { |
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|
1685 boost::mutex::scoped_lock lock(mutex_); |
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diff
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|
1686 |
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diff
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|
1687 ResourceType rtype; |
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434
diff
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|
1688 int64_t id; |
1294 | 1689 if (!db_.LookupResource(id, rtype, publicId)) |
436
d51186bf7602
read access to metadata
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434
diff
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|
1690 { |
d51186bf7602
read access to metadata
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diff
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|
1691 throw OrthancException(ErrorCode_UnknownResource); |
d51186bf7602
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434
diff
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|
1692 } |
d51186bf7602
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434
diff
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|
1693 |
1247 | 1694 db_.ListAvailableMetadata(target, id); |
436
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diff
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|
1695 } |
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diff
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|
1696 |
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diff
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|
1697 |
697
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diff
changeset
|
1698 void ServerIndex::ListAvailableAttachments(std::list<FileContentType>& target, |
dd1ce9a2844c
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diff
changeset
|
1699 const std::string& publicId, |
dd1ce9a2844c
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diff
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|
1700 ResourceType expectedType) |
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diff
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|
1701 { |
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diff
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|
1702 boost::mutex::scoped_lock lock(mutex_); |
dd1ce9a2844c
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diff
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|
1703 |
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diff
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|
1704 ResourceType type; |
dd1ce9a2844c
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diff
changeset
|
1705 int64_t id; |
1294 | 1706 if (!db_.LookupResource(id, type, publicId) || |
697
dd1ce9a2844c
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diff
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|
1707 expectedType != type) |
dd1ce9a2844c
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diff
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|
1708 { |
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diff
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|
1709 throw OrthancException(ErrorCode_UnknownResource); |
dd1ce9a2844c
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diff
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|
1710 } |
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|
1711 |
1247 | 1712 db_.ListAvailableAttachments(target, id); |
697
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diff
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|
1713 } |
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diff
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|
1714 |
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1715 |
306
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|
1716 bool ServerIndex::LookupParent(std::string& target, |
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1717 const std::string& publicId) |
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1718 { |
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|
1719 boost::mutex::scoped_lock lock(mutex_); |
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1720 |
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1721 ResourceType type; |
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1722 int64_t id; |
1294 | 1723 if (!db_.LookupResource(id, type, publicId)) |
306
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1724 { |
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1725 throw OrthancException(ErrorCode_UnknownResource); |
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1726 } |
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|
1727 |
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1728 int64_t parentId; |
1247 | 1729 if (db_.LookupParent(parentId, id)) |
306
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1730 { |
1247 | 1731 target = db_.GetPublicId(parentId); |
306
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1732 return true; |
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1733 } |
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1734 else |
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1735 { |
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1736 return false; |
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1737 } |
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1738 } |
310 | 1739 |
1740 | |
1741 uint64_t ServerIndex::IncrementGlobalSequence(GlobalProperty sequence) | |
1742 { | |
1743 boost::mutex::scoped_lock lock(mutex_); | |
1310
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1744 Transaction transaction(*this); |
311 | 1745 |
1237 | 1746 uint64_t seq = IncrementGlobalSequenceInternal(sequence); |
1310
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|
1747 transaction.Commit(0); |
311 | 1748 |
1749 return seq; | |
310 | 1750 } |
315 | 1751 |
1752 | |
1753 | |
1754 void ServerIndex::LogChange(ChangeType changeType, | |
1755 const std::string& publicId) | |
1756 { | |
1757 boost::mutex::scoped_lock lock(mutex_); | |
1310
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|
1758 Transaction transaction(*this); |
315 | 1759 |
1760 int64_t id; | |
1761 ResourceType type; | |
1294 | 1762 if (!db_.LookupResource(id, type, publicId)) |
315 | 1763 { |
1764 throw OrthancException(ErrorCode_UnknownResource); | |
1765 } | |
1766 | |
1237 | 1767 LogChange(id, changeType, type, publicId); |
1310
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1768 transaction.Commit(0); |
315 | 1769 } |
413
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1770 |
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1771 |
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1772 void ServerIndex::DeleteChanges() |
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1773 { |
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1774 boost::mutex::scoped_lock lock(mutex_); |
1286 | 1775 db_.ClearChanges(); |
413
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1776 } |
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1777 |
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1778 void ServerIndex::DeleteExportedResources() |
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1779 { |
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1780 boost::mutex::scoped_lock lock(mutex_); |
1286 | 1781 db_.ClearExportedResources(); |
413
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1782 } |
440
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1783 |
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1784 |
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1785 void ServerIndex::GetStatisticsInternal(/* out */ uint64_t& diskSize, |
646 | 1786 /* out */ uint64_t& uncompressedSize, |
1787 /* out */ unsigned int& countStudies, | |
1788 /* out */ unsigned int& countSeries, | |
1789 /* out */ unsigned int& countInstances, | |
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1790 /* out */ uint64_t& dicomDiskSize, |
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1791 /* out */ uint64_t& dicomUncompressedSize, |
646 | 1792 /* in */ int64_t id, |
1793 /* in */ ResourceType type) | |
440
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1794 { |
646 | 1795 std::stack<int64_t> toExplore; |
1796 toExplore.push(id); | |
440
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1797 |
646 | 1798 countInstances = 0; |
1799 countSeries = 0; | |
1800 countStudies = 0; | |
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1801 diskSize = 0; |
646 | 1802 uncompressedSize = 0; |
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1803 dicomDiskSize = 0; |
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1804 dicomUncompressedSize = 0; |
440
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1805 |
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1806 while (!toExplore.empty()) |
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1807 { |
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1808 // Get the internal ID of the current resource |
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1809 int64_t resource = toExplore.top(); |
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1810 toExplore.pop(); |
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1811 |
1247 | 1812 ResourceType thisType = db_.GetResourceType(resource); |
440
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1813 |
702
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1814 std::list<FileContentType> f; |
1247 | 1815 db_.ListAvailableAttachments(f, resource); |
702
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1816 |
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1817 for (std::list<FileContentType>::const_iterator |
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1818 it = f.begin(); it != f.end(); ++it) |
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1819 { |
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1820 FileInfo attachment; |
1247 | 1821 if (db_.LookupAttachment(attachment, resource, *it)) |
702
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1822 { |
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1823 if (attachment.GetContentType() == FileContentType_Dicom) |
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1824 { |
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1825 dicomDiskSize += attachment.GetCompressedSize(); |
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1826 dicomUncompressedSize += attachment.GetUncompressedSize(); |
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1827 } |
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1828 |
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1829 diskSize += attachment.GetCompressedSize(); |
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1830 uncompressedSize += attachment.GetUncompressedSize(); |
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1831 } |
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1832 } |
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1833 |
440
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1834 if (thisType == ResourceType_Instance) |
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1835 { |
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1836 countInstances++; |
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1837 } |
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1838 else |
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1839 { |
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1840 switch (thisType) |
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1841 { |
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1842 case ResourceType_Study: |
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1843 countStudies++; |
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1844 break; |
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1845 |
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1846 case ResourceType_Series: |
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1847 countSeries++; |
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1848 break; |
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1849 |
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1850 default: |
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1851 break; |
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1852 } |
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1853 |
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1854 // Tag all the children of this resource as to be explored |
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1855 std::list<int64_t> tmp; |
1247 | 1856 db_.GetChildrenInternalId(tmp, resource); |
440
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1857 for (std::list<int64_t>::const_iterator |
656 | 1858 it = tmp.begin(); it != tmp.end(); ++it) |
440
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1859 { |
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1860 toExplore.push(*it); |
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1861 } |
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1862 } |
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1863 } |
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1864 |
646 | 1865 if (countStudies == 0) |
1866 { | |
1867 countStudies = 1; | |
1868 } | |
1869 | |
1870 if (countSeries == 0) | |
1871 { | |
1872 countSeries = 1; | |
1873 } | |
1874 } | |
1875 | |
1876 | |
1877 | |
1878 void ServerIndex::GetStatistics(Json::Value& target, | |
1879 const std::string& publicId) | |
1880 { | |
1881 boost::mutex::scoped_lock lock(mutex_); | |
1882 | |
1883 ResourceType type; | |
1884 int64_t top; | |
1294 | 1885 if (!db_.LookupResource(top, type, publicId)) |
646 | 1886 { |
1887 throw OrthancException(ErrorCode_UnknownResource); | |
1888 } | |
1889 | |
1890 uint64_t uncompressedSize; | |
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1891 uint64_t diskSize; |
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1892 uint64_t dicomUncompressedSize; |
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1893 uint64_t dicomDiskSize; |
646 | 1894 unsigned int countStudies; |
1895 unsigned int countSeries; | |
1896 unsigned int countInstances; | |
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1897 GetStatisticsInternal(diskSize, uncompressedSize, countStudies, |
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1898 countSeries, countInstances, dicomDiskSize, dicomUncompressedSize, top, type); |
646 | 1899 |
440
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1900 target = Json::objectValue; |
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1901 target["DiskSize"] = boost::lexical_cast<std::string>(diskSize); |
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1902 target["DiskSizeMB"] = static_cast<unsigned int>(diskSize / MEGA_BYTES); |
440
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1903 target["UncompressedSize"] = boost::lexical_cast<std::string>(uncompressedSize); |
1310
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1904 target["UncompressedSizeMB"] = static_cast<unsigned int>(uncompressedSize / MEGA_BYTES); |
440
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1905 |
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1906 target["DicomDiskSize"] = boost::lexical_cast<std::string>(dicomDiskSize); |
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1907 target["DicomDiskSizeMB"] = static_cast<unsigned int>(dicomDiskSize / MEGA_BYTES); |
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1908 target["DicomUncompressedSize"] = boost::lexical_cast<std::string>(dicomUncompressedSize); |
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1909 target["DicomUncompressedSizeMB"] = static_cast<unsigned int>(dicomUncompressedSize / MEGA_BYTES); |
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1910 |
440
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1911 switch (type) |
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1912 { |
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1913 // Do NOT add "break" below this point! |
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1914 case ResourceType_Patient: |
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1915 target["CountStudies"] = countStudies; |
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1916 |
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1917 case ResourceType_Study: |
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1918 target["CountSeries"] = countSeries; |
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1919 |
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1920 case ResourceType_Series: |
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1921 target["CountInstances"] = countInstances; |
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1922 |
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1923 case ResourceType_Instance: |
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1924 default: |
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1925 break; |
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1926 } |
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1927 } |
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1928 |
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1929 |
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1930 void ServerIndex::GetStatistics(/* out */ uint64_t& diskSize, |
646 | 1931 /* out */ uint64_t& uncompressedSize, |
1932 /* out */ unsigned int& countStudies, | |
1933 /* out */ unsigned int& countSeries, | |
1934 /* out */ unsigned int& countInstances, | |
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1935 /* out */ uint64_t& dicomDiskSize, |
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1936 /* out */ uint64_t& dicomUncompressedSize, |
646 | 1937 const std::string& publicId) |
1938 { | |
1939 boost::mutex::scoped_lock lock(mutex_); | |
1940 | |
1941 ResourceType type; | |
1942 int64_t top; | |
1294 | 1943 if (!db_.LookupResource(top, type, publicId)) |
646 | 1944 { |
1945 throw OrthancException(ErrorCode_UnknownResource); | |
1946 } | |
1947 | |
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1948 GetStatisticsInternal(diskSize, uncompressedSize, countStudies, |
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1949 countSeries, countInstances, dicomDiskSize, |
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1950 dicomUncompressedSize, top, type); |
646 | 1951 } |
1952 | |
1953 | |
2665
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1954 void ServerIndex::UnstableResourcesMonitorThread(ServerIndex* that, |
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1955 unsigned int threadSleep) |
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1956 { |
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1957 int stableAge; |
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1958 |
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1959 { |
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1960 OrthancConfiguration::ReaderLock lock; |
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1961 stableAge = lock.GetConfiguration().GetUnsignedIntegerParameter("StableAge", 60); |
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1962 } |
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1963 |
511
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1964 if (stableAge <= 0) |
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1965 { |
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1966 stableAge = 60; |
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1967 } |
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1968 |
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1969 LOG(INFO) << "Starting the monitor for stable resources (stable age = " << stableAge << ")"; |
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1970 |
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1971 while (!that->done_) |
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1972 { |
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1973 // Check for stable resources each few seconds |
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1974 boost::this_thread::sleep(boost::posix_time::milliseconds(threadSleep)); |
511
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1975 |
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1976 boost::mutex::scoped_lock lock(that->mutex_); |
513 | 1977 |
511
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1978 while (!that->unstableResources_.IsEmpty() && |
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1979 that->unstableResources_.GetOldestPayload().GetAge() > static_cast<unsigned int>(stableAge)) |
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1980 { |
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1981 // This DICOM resource has not received any new instance for |
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1982 // some time. It can be considered as stable. |
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1983 |
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1984 UnstableResourcePayload payload; |
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1985 int64_t id = that->unstableResources_.RemoveOldest(payload); |
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1986 |
513 | 1987 // Ensure that the resource is still existing before logging the change |
1247 | 1988 if (that->db_.IsExistingResource(id)) |
511
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1989 { |
1177
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1990 switch (payload.GetResourceType()) |
513 | 1991 { |
1177
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1992 case ResourceType_Patient: |
1237 | 1993 that->LogChange(id, ChangeType_StablePatient, ResourceType_Patient, payload.GetPublicId()); |
513 | 1994 break; |
511
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1995 |
1177
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1996 case ResourceType_Study: |
1237 | 1997 that->LogChange(id, ChangeType_StableStudy, ResourceType_Study, payload.GetPublicId()); |
513 | 1998 break; |
511
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1999 |
1177
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2000 case ResourceType_Series: |
1237 | 2001 that->LogChange(id, ChangeType_StableSeries, ResourceType_Series, payload.GetPublicId()); |
513 | 2002 break; |
2003 | |
2004 default: | |
2005 throw OrthancException(ErrorCode_InternalError); | |
2006 } | |
2007 | |
2008 //LOG(INFO) << "Stable resource: " << EnumerationToString(payload.type_) << " " << id; | |
511
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2009 } |
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2010 } |
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2011 } |
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2012 |
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2013 LOG(INFO) << "Closing the monitor thread for stable resources"; |
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2014 } |
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2015 |
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2016 |
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2017 void ServerIndex::MarkAsUnstable(int64_t id, |
1177
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2018 Orthanc::ResourceType type, |
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2019 const std::string& publicId) |
511
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2020 { |
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2021 // WARNING: Before calling this method, "mutex_" must be locked. |
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2022 |
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2023 assert(type == Orthanc::ResourceType_Patient || |
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2024 type == Orthanc::ResourceType_Study || |
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2025 type == Orthanc::ResourceType_Series); |
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2026 |
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2027 UnstableResourcePayload payload(type, publicId); |
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2028 unstableResources_.AddOrMakeMostRecent(id, payload); |
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2029 //LOG(INFO) << "Unstable resource: " << EnumerationToString(type) << " " << id; |
1189
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2030 |
1237 | 2031 LogChange(id, ChangeType_NewChildInstance, type, publicId); |
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2032 } |
521 | 2033 |
2034 | |
2035 | |
1728
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2036 void ServerIndex::LookupIdentifierExact(std::list<std::string>& result, |
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2037 ResourceType level, |
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2038 const DicomTag& tag, |
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2039 const std::string& value) |
615 | 2040 { |
1727 | 2041 assert((level == ResourceType_Patient && tag == DICOM_TAG_PATIENT_ID) || |
2042 (level == ResourceType_Study && tag == DICOM_TAG_STUDY_INSTANCE_UID) || | |
2043 (level == ResourceType_Study && tag == DICOM_TAG_ACCESSION_NUMBER) || | |
2044 (level == ResourceType_Series && tag == DICOM_TAG_SERIES_INSTANCE_UID) || | |
2045 (level == ResourceType_Instance && tag == DICOM_TAG_SOP_INSTANCE_UID)); | |
1725 | 2046 |
615 | 2047 result.clear(); |
2048 | |
2049 boost::mutex::scoped_lock lock(mutex_); | |
2050 | |
1746 | 2051 LookupIdentifierQuery query(level); |
2052 query.AddConstraint(tag, IdentifierConstraintType_Equal, value); | |
2053 query.Apply(result, db_); | |
615 | 2054 } |
2055 | |
2056 | |
699
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2057 StoreStatus ServerIndex::AddAttachment(const FileInfo& attachment, |
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2058 const std::string& publicId) |
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2059 { |
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2060 boost::mutex::scoped_lock lock(mutex_); |
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2061 |
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2062 Transaction t(*this); |
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2063 |
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2064 ResourceType resourceType; |
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2065 int64_t resourceId; |
1294 | 2066 if (!db_.LookupResource(resourceId, resourceType, publicId)) |
699
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2067 { |
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2068 return StoreStatus_Failure; // Inexistent resource |
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2069 } |
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2070 |
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2071 // Remove possible previous attachment |
1247 | 2072 db_.DeleteAttachment(resourceId, attachment.GetContentType()); |
699
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|
2073 |
704
4789da60d655
recycling with custom attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
702
diff
changeset
|
2074 // Locate the patient of the target resource |
4789da60d655
recycling with custom attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
702
diff
changeset
|
2075 int64_t patientId = resourceId; |
4789da60d655
recycling with custom attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
702
diff
changeset
|
2076 for (;;) |
4789da60d655
recycling with custom attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
702
diff
changeset
|
2077 { |
4789da60d655
recycling with custom attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
702
diff
changeset
|
2078 int64_t parent; |
1247 | 2079 if (db_.LookupParent(parent, patientId)) |
704
4789da60d655
recycling with custom attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
702
diff
changeset
|
2080 { |
4789da60d655
recycling with custom attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
702
diff
changeset
|
2081 // We have not reached the patient level yet |
4789da60d655
recycling with custom attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
702
diff
changeset
|
2082 patientId = parent; |
4789da60d655
recycling with custom attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
702
diff
changeset
|
2083 } |
4789da60d655
recycling with custom attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
702
diff
changeset
|
2084 else |
4789da60d655
recycling with custom attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
702
diff
changeset
|
2085 { |
4789da60d655
recycling with custom attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
702
diff
changeset
|
2086 // We have reached the patient level |
4789da60d655
recycling with custom attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
702
diff
changeset
|
2087 break; |
4789da60d655
recycling with custom attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
702
diff
changeset
|
2088 } |
4789da60d655
recycling with custom attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
702
diff
changeset
|
2089 } |
4789da60d655
recycling with custom attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
702
diff
changeset
|
2090 |
4789da60d655
recycling with custom attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
702
diff
changeset
|
2091 // Possibly apply the recycling mechanism while preserving this patient |
1247 | 2092 assert(db_.GetResourceType(patientId) == ResourceType_Patient); |
2093 Recycle(attachment.GetCompressedSize(), db_.GetPublicId(patientId)); | |
704
4789da60d655
recycling with custom attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
702
diff
changeset
|
2094 |
1247 | 2095 db_.AddAttachment(resourceId, attachment); |
699
2929e17f8447
add attachments to resources
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
697
diff
changeset
|
2096 |
1773
613df4362575
New UpdatedAttachment and UpdatedMetadata events in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1757
diff
changeset
|
2097 if (IsUserContentType(attachment.GetContentType())) |
613df4362575
New UpdatedAttachment and UpdatedMetadata events in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1757
diff
changeset
|
2098 { |
613df4362575
New UpdatedAttachment and UpdatedMetadata events in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1757
diff
changeset
|
2099 LogChange(resourceId, ChangeType_UpdatedAttachment, resourceType, publicId); |
613df4362575
New UpdatedAttachment and UpdatedMetadata events in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1757
diff
changeset
|
2100 } |
613df4362575
New UpdatedAttachment and UpdatedMetadata events in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1757
diff
changeset
|
2101 |
699
2929e17f8447
add attachments to resources
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
697
diff
changeset
|
2102 t.Commit(attachment.GetCompressedSize()); |
2929e17f8447
add attachments to resources
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
697
diff
changeset
|
2103 |
2929e17f8447
add attachments to resources
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
697
diff
changeset
|
2104 return StoreStatus_Success; |
2929e17f8447
add attachments to resources
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
697
diff
changeset
|
2105 } |
2929e17f8447
add attachments to resources
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
697
diff
changeset
|
2106 |
702
7592a48e97e4
delete custom attachment
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
701
diff
changeset
|
2107 |
7592a48e97e4
delete custom attachment
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
701
diff
changeset
|
2108 void ServerIndex::DeleteAttachment(const std::string& publicId, |
7592a48e97e4
delete custom attachment
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
701
diff
changeset
|
2109 FileContentType type) |
7592a48e97e4
delete custom attachment
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
701
diff
changeset
|
2110 { |
7592a48e97e4
delete custom attachment
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
701
diff
changeset
|
2111 boost::mutex::scoped_lock lock(mutex_); |
7592a48e97e4
delete custom attachment
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
701
diff
changeset
|
2112 Transaction t(*this); |
7592a48e97e4
delete custom attachment
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
701
diff
changeset
|
2113 |
7592a48e97e4
delete custom attachment
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
701
diff
changeset
|
2114 ResourceType rtype; |
7592a48e97e4
delete custom attachment
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
701
diff
changeset
|
2115 int64_t id; |
1294 | 2116 if (!db_.LookupResource(id, rtype, publicId)) |
702
7592a48e97e4
delete custom attachment
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
701
diff
changeset
|
2117 { |
7592a48e97e4
delete custom attachment
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
701
diff
changeset
|
2118 throw OrthancException(ErrorCode_UnknownResource); |
7592a48e97e4
delete custom attachment
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
701
diff
changeset
|
2119 } |
7592a48e97e4
delete custom attachment
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
701
diff
changeset
|
2120 |
1247 | 2121 db_.DeleteAttachment(id, type); |
702
7592a48e97e4
delete custom attachment
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
701
diff
changeset
|
2122 |
1773
613df4362575
New UpdatedAttachment and UpdatedMetadata events in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1757
diff
changeset
|
2123 if (IsUserContentType(type)) |
613df4362575
New UpdatedAttachment and UpdatedMetadata events in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1757
diff
changeset
|
2124 { |
613df4362575
New UpdatedAttachment and UpdatedMetadata events in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1757
diff
changeset
|
2125 LogChange(id, ChangeType_UpdatedAttachment, rtype, publicId); |
613df4362575
New UpdatedAttachment and UpdatedMetadata events in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1757
diff
changeset
|
2126 } |
613df4362575
New UpdatedAttachment and UpdatedMetadata events in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1757
diff
changeset
|
2127 |
702
7592a48e97e4
delete custom attachment
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
701
diff
changeset
|
2128 t.Commit(0); |
7592a48e97e4
delete custom attachment
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
701
diff
changeset
|
2129 } |
7592a48e97e4
delete custom attachment
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
701
diff
changeset
|
2130 |
7592a48e97e4
delete custom attachment
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
701
diff
changeset
|
2131 |
1002
b067017a8a5b
anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
831
diff
changeset
|
2132 bool ServerIndex::GetMetadata(Json::Value& target, |
b067017a8a5b
anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
831
diff
changeset
|
2133 const std::string& publicId) |
b067017a8a5b
anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
831
diff
changeset
|
2134 { |
b067017a8a5b
anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
831
diff
changeset
|
2135 boost::mutex::scoped_lock lock(mutex_); |
b067017a8a5b
anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
831
diff
changeset
|
2136 |
b067017a8a5b
anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
831
diff
changeset
|
2137 target = Json::objectValue; |
b067017a8a5b
anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
831
diff
changeset
|
2138 |
b067017a8a5b
anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
831
diff
changeset
|
2139 ResourceType type; |
b067017a8a5b
anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
831
diff
changeset
|
2140 int64_t id; |
1294 | 2141 if (!db_.LookupResource(id, type, publicId)) |
1002
b067017a8a5b
anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
831
diff
changeset
|
2142 { |
b067017a8a5b
anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
831
diff
changeset
|
2143 return false; |
b067017a8a5b
anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
831
diff
changeset
|
2144 } |
b067017a8a5b
anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
831
diff
changeset
|
2145 |
b067017a8a5b
anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
831
diff
changeset
|
2146 std::list<MetadataType> metadata; |
1247 | 2147 db_.ListAvailableMetadata(metadata, id); |
1002
b067017a8a5b
anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
831
diff
changeset
|
2148 |
b067017a8a5b
anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
831
diff
changeset
|
2149 for (std::list<MetadataType>::const_iterator |
1304 | 2150 it = metadata.begin(); it != metadata.end(); ++it) |
1002
b067017a8a5b
anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
831
diff
changeset
|
2151 { |
b067017a8a5b
anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
831
diff
changeset
|
2152 std::string key = EnumerationToString(*it); |
1238 | 2153 |
2154 std::string value; | |
1247 | 2155 if (!db_.LookupMetadata(value, id, *it)) |
1238 | 2156 { |
2157 value.clear(); | |
2158 } | |
2159 | |
1002
b067017a8a5b
anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
831
diff
changeset
|
2160 target[key] = value; |
b067017a8a5b
anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
831
diff
changeset
|
2161 } |
b067017a8a5b
anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
831
diff
changeset
|
2162 |
b067017a8a5b
anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
831
diff
changeset
|
2163 return true; |
b067017a8a5b
anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
831
diff
changeset
|
2164 } |
1218
efece308018e
report database version in /system
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1198
diff
changeset
|
2165 |
efece308018e
report database version in /system
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1198
diff
changeset
|
2166 |
1249
40725595aaf0
Plugins can get/set global properties to save their configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1247
diff
changeset
|
2167 void ServerIndex::SetGlobalProperty(GlobalProperty property, |
40725595aaf0
Plugins can get/set global properties to save their configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1247
diff
changeset
|
2168 const std::string& value) |
40725595aaf0
Plugins can get/set global properties to save their configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1247
diff
changeset
|
2169 { |
40725595aaf0
Plugins can get/set global properties to save their configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1247
diff
changeset
|
2170 boost::mutex::scoped_lock lock(mutex_); |
40725595aaf0
Plugins can get/set global properties to save their configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1247
diff
changeset
|
2171 db_.SetGlobalProperty(property, value); |
40725595aaf0
Plugins can get/set global properties to save their configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1247
diff
changeset
|
2172 } |
40725595aaf0
Plugins can get/set global properties to save their configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1247
diff
changeset
|
2173 |
40725595aaf0
Plugins can get/set global properties to save their configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1247
diff
changeset
|
2174 |
2668
d26dd081df97
saving jobs engine on exit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2665
diff
changeset
|
2175 bool ServerIndex::LookupGlobalProperty(std::string& value, |
d26dd081df97
saving jobs engine on exit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2665
diff
changeset
|
2176 GlobalProperty property) |
d26dd081df97
saving jobs engine on exit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2665
diff
changeset
|
2177 { |
d26dd081df97
saving jobs engine on exit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2665
diff
changeset
|
2178 boost::mutex::scoped_lock lock(mutex_); |
d26dd081df97
saving jobs engine on exit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2665
diff
changeset
|
2179 return db_.LookupGlobalProperty(value, property); |
d26dd081df97
saving jobs engine on exit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2665
diff
changeset
|
2180 } |
d26dd081df97
saving jobs engine on exit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2665
diff
changeset
|
2181 |
d26dd081df97
saving jobs engine on exit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2665
diff
changeset
|
2182 |
1218
efece308018e
report database version in /system
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1198
diff
changeset
|
2183 std::string ServerIndex::GetGlobalProperty(GlobalProperty property, |
efece308018e
report database version in /system
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1198
diff
changeset
|
2184 const std::string& defaultValue) |
efece308018e
report database version in /system
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1198
diff
changeset
|
2185 { |
1239 | 2186 std::string value; |
2668
d26dd081df97
saving jobs engine on exit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2665
diff
changeset
|
2187 |
d26dd081df97
saving jobs engine on exit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2665
diff
changeset
|
2188 if (LookupGlobalProperty(value, property)) |
1239 | 2189 { |
2190 return value; | |
2191 } | |
2192 else | |
2193 { | |
2194 return defaultValue; | |
2195 } | |
1218
efece308018e
report database version in /system
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1198
diff
changeset
|
2196 } |
efece308018e
report database version in /system
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1198
diff
changeset
|
2197 |
1352 | 2198 |
2199 bool ServerIndex::GetMainDicomTags(DicomMap& result, | |
2200 const std::string& publicId, | |
1677
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1676
diff
changeset
|
2201 ResourceType expectedType, |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1676
diff
changeset
|
2202 ResourceType levelOfInterest) |
1352 | 2203 { |
1677
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1676
diff
changeset
|
2204 // Yes, the following test could be shortened, but we wish to make it as clear as possible |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1676
diff
changeset
|
2205 if (!(expectedType == ResourceType_Patient && levelOfInterest == ResourceType_Patient) && |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1676
diff
changeset
|
2206 !(expectedType == ResourceType_Study && levelOfInterest == ResourceType_Patient) && |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1676
diff
changeset
|
2207 !(expectedType == ResourceType_Study && levelOfInterest == ResourceType_Study) && |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1676
diff
changeset
|
2208 !(expectedType == ResourceType_Series && levelOfInterest == ResourceType_Series) && |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1676
diff
changeset
|
2209 !(expectedType == ResourceType_Instance && levelOfInterest == ResourceType_Instance)) |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1676
diff
changeset
|
2210 { |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1676
diff
changeset
|
2211 throw OrthancException(ErrorCode_ParameterOutOfRange); |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2212 } |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2213 |
1352 | 2214 result.Clear(); |
2215 | |
2216 boost::mutex::scoped_lock lock(mutex_); | |
2217 | |
2218 // Lookup for the requested resource | |
2219 int64_t id; | |
2220 ResourceType type; | |
2221 if (!db_.LookupResource(id, type, publicId) || | |
2222 type != expectedType) | |
2223 { | |
2224 return false; | |
2225 } | |
1677
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1676
diff
changeset
|
2226 |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1676
diff
changeset
|
2227 if (type == ResourceType_Study) |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1676
diff
changeset
|
2228 { |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1676
diff
changeset
|
2229 DicomMap tmp; |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1676
diff
changeset
|
2230 db_.GetMainDicomTags(tmp, id); |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1676
diff
changeset
|
2231 |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1676
diff
changeset
|
2232 switch (levelOfInterest) |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1676
diff
changeset
|
2233 { |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1676
diff
changeset
|
2234 case ResourceType_Patient: |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1676
diff
changeset
|
2235 tmp.ExtractPatientInformation(result); |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1676
diff
changeset
|
2236 return true; |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1676
diff
changeset
|
2237 |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1676
diff
changeset
|
2238 case ResourceType_Study: |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1676
diff
changeset
|
2239 tmp.ExtractStudyInformation(result); |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1676
diff
changeset
|
2240 return true; |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1676
diff
changeset
|
2241 |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1676
diff
changeset
|
2242 default: |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1676
diff
changeset
|
2243 throw OrthancException(ErrorCode_InternalError); |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1676
diff
changeset
|
2244 } |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1676
diff
changeset
|
2245 } |
1352 | 2246 else |
2247 { | |
2248 db_.GetMainDicomTags(result, id); | |
2249 return true; | |
2250 } | |
2251 } | |
1555
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1509
diff
changeset
|
2252 |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1509
diff
changeset
|
2253 |
3006
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2254 bool ServerIndex::GetAllMainDicomTags(DicomMap& result, |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2255 const std::string& instancePublicId) |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2256 { |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2257 result.Clear(); |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2258 |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2259 boost::mutex::scoped_lock lock(mutex_); |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2260 |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2261 // Lookup for the requested resource |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2262 int64_t instance; |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2263 ResourceType type; |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2264 if (!db_.LookupResource(instance, type, instancePublicId) || |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2265 type != ResourceType_Instance) |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2266 { |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2267 return false; |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2268 } |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2269 else |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2270 { |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2271 DicomMap tmp; |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2272 |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2273 db_.GetMainDicomTags(tmp, instance); |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2274 result.Merge(tmp); |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2275 |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2276 int64_t series; |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2277 if (!db_.LookupParent(series, instance)) |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2278 { |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2279 throw OrthancException(ErrorCode_InternalError); |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2280 } |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2281 |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2282 tmp.Clear(); |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2283 db_.GetMainDicomTags(tmp, series); |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2284 result.Merge(tmp); |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2285 |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2286 int64_t study; |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2287 if (!db_.LookupParent(study, series)) |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2288 { |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2289 throw OrthancException(ErrorCode_InternalError); |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2290 } |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2291 |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2292 tmp.Clear(); |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2293 db_.GetMainDicomTags(tmp, study); |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2294 result.Merge(tmp); |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2295 |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2296 #ifndef NDEBUG |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2297 { |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2298 // Sanity test to check that all the main DICOM tags from the |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2299 // patient level are copied at the study level |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2300 |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2301 int64_t patient; |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2302 if (!db_.LookupParent(patient, study)) |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2303 { |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2304 throw OrthancException(ErrorCode_InternalError); |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2305 } |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2306 |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2307 tmp.Clear(); |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2308 db_.GetMainDicomTags(tmp, study); |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2309 |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2310 std::set<DicomTag> patientTags; |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2311 tmp.GetTags(patientTags); |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2312 |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2313 for (std::set<DicomTag>::const_iterator |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2314 it = patientTags.begin(); it != patientTags.end(); ++it) |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2315 { |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2316 assert(result.HasTag(*it)); |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2317 } |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2318 } |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2319 #endif |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2320 |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2321 return true; |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2322 } |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2323 } |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2324 |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2325 |
1555
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1509
diff
changeset
|
2326 bool ServerIndex::LookupResourceType(ResourceType& type, |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1509
diff
changeset
|
2327 const std::string& publicId) |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1509
diff
changeset
|
2328 { |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1509
diff
changeset
|
2329 boost::mutex::scoped_lock lock(mutex_); |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1509
diff
changeset
|
2330 |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2331 int64_t id; |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1509
diff
changeset
|
2332 return db_.LookupResource(id, type, publicId); |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1509
diff
changeset
|
2333 } |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1509
diff
changeset
|
2334 |
1668
de1413733c97
reconstructing main dicom tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1555
diff
changeset
|
2335 |
de1413733c97
reconstructing main dicom tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1555
diff
changeset
|
2336 unsigned int ServerIndex::GetDatabaseVersion() |
de1413733c97
reconstructing main dicom tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1555
diff
changeset
|
2337 { |
de1413733c97
reconstructing main dicom tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1555
diff
changeset
|
2338 boost::mutex::scoped_lock lock(mutex_); |
de1413733c97
reconstructing main dicom tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1555
diff
changeset
|
2339 return db_.GetDatabaseVersion(); |
de1413733c97
reconstructing main dicom tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1555
diff
changeset
|
2340 } |
1750
55d52567bebb
LookupResource implemented
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1747
diff
changeset
|
2341 |
55d52567bebb
LookupResource implemented
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1747
diff
changeset
|
2342 |
1753 | 2343 void ServerIndex::FindCandidates(std::vector<std::string>& resources, |
2344 std::vector<std::string>& instances, | |
1757
98abb8d7f905
ServerContext::Apply lookup
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1754
diff
changeset
|
2345 const ::Orthanc::LookupResource& lookup) |
1750
55d52567bebb
LookupResource implemented
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1747
diff
changeset
|
2346 { |
1753 | 2347 boost::mutex::scoped_lock lock(mutex_); |
2348 | |
2349 std::list<int64_t> tmp; | |
2350 lookup.FindCandidates(tmp, db_); | |
2351 | |
2352 resources.resize(tmp.size()); | |
2353 instances.resize(tmp.size()); | |
2354 | |
2355 size_t pos = 0; | |
2356 for (std::list<int64_t>::const_iterator | |
2357 it = tmp.begin(); it != tmp.end(); ++it, pos++) | |
2358 { | |
1754 | 2359 assert(db_.GetResourceType(*it) == lookup.GetLevel()); |
2360 | |
1753 | 2361 int64_t instance; |
2120 | 2362 if (!ServerToolbox::FindOneChildInstance(instance, db_, *it, lookup.GetLevel())) |
1753 | 2363 { |
2364 throw OrthancException(ErrorCode_InternalError); | |
2365 } | |
2366 | |
2367 resources[pos] = db_.GetPublicId(*it); | |
2368 instances[pos] = db_.GetPublicId(instance); | |
2369 } | |
1750
55d52567bebb
LookupResource implemented
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1747
diff
changeset
|
2370 } |
1898
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2371 |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2372 |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2373 bool ServerIndex::LookupParent(std::string& target, |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2374 const std::string& publicId, |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2375 ResourceType parentType) |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2376 { |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2377 boost::mutex::scoped_lock lock(mutex_); |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2378 |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2379 ResourceType type; |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2380 int64_t id; |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2381 if (!db_.LookupResource(id, type, publicId)) |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2382 { |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2383 throw OrthancException(ErrorCode_UnknownResource); |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2384 } |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2385 |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2386 while (type != parentType) |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2387 { |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2388 int64_t parentId; |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2389 |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2390 if (type == ResourceType_Patient || // Cannot further go up in hierarchy |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2391 !db_.LookupParent(parentId, id)) |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2392 { |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2393 return false; |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2394 } |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2395 |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2396 id = parentId; |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2397 type = GetParentResourceType(type); |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2398 } |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2399 |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2400 target = db_.GetPublicId(id); |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2401 return true; |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2402 } |
2209
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2403 |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2404 |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2405 void ServerIndex::ReconstructInstance(ParsedDicomFile& dicom) |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2406 { |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2407 DicomMap summary; |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2408 dicom.ExtractDicomSummary(summary); |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2409 |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2410 DicomInstanceHasher hasher(summary); |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2411 |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2412 boost::mutex::scoped_lock lock(mutex_); |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2413 |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2414 try |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2415 { |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2416 Transaction t(*this); |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2417 |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2418 int64_t patient = -1, study = -1, series = -1, instance = -1; |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2419 |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2420 ResourceType dummy; |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2421 if (!db_.LookupResource(patient, dummy, hasher.HashPatient()) || |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2422 !db_.LookupResource(study, dummy, hasher.HashStudy()) || |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2423 !db_.LookupResource(series, dummy, hasher.HashSeries()) || |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2424 !db_.LookupResource(instance, dummy, hasher.HashInstance()) || |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2425 patient == -1 || |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2426 study == -1 || |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2427 series == -1 || |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2428 instance == -1) |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2429 { |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2430 throw OrthancException(ErrorCode_InternalError); |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2431 } |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2432 |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2433 db_.ClearMainDicomTags(patient); |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2434 db_.ClearMainDicomTags(study); |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2435 db_.ClearMainDicomTags(series); |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2436 db_.ClearMainDicomTags(instance); |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2437 |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2438 ServerToolbox::StoreMainDicomTags(db_, patient, ResourceType_Patient, summary); |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2439 ServerToolbox::StoreMainDicomTags(db_, study, ResourceType_Study, summary); |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2440 ServerToolbox::StoreMainDicomTags(db_, series, ResourceType_Series, summary); |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2441 ServerToolbox::StoreMainDicomTags(db_, instance, ResourceType_Instance, summary); |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2442 |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2443 { |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2444 std::string s; |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2445 if (dicom.LookupTransferSyntax(s)) |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2446 { |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2447 db_.SetMetadata(instance, MetadataType_Instance_TransferSyntax, s); |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2448 } |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2449 } |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2450 |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2451 const DicomValue* value; |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2452 if ((value = summary.TestAndGetValue(DICOM_TAG_SOP_CLASS_UID)) != NULL && |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2453 !value->IsNull() && |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2454 !value->IsBinary()) |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2455 { |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2456 db_.SetMetadata(instance, MetadataType_Instance_SopClassUid, value->GetContent()); |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2457 } |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2458 |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2459 t.Commit(0); // No change in the DB size |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2460 } |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2461 catch (OrthancException& e) |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2462 { |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2463 LOG(ERROR) << "EXCEPTION [" << e.What() << "]"; |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2464 } |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2465 } |
0 | 2466 } |