Mercurial > hg > orthanc
annotate OrthancServer/ServerContext.cpp @ 4005:7f9909062d9c
removed EnableEmscriptenLogging()
author | Sebastien Jodogne <s.jodogne@gmail.com> |
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date | Sat, 06 Jun 2020 11:18:12 +0200 |
parents | e42f5445d20d |
children | a2e4edc7b9aa |
rev | line source |
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224 | 1 /** |
2 * Orthanc - A Lightweight, RESTful DICOM Store | |
1900 | 3 * Copyright (C) 2012-2016 Sebastien Jodogne, Medical Physics |
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4 * Department, University Hospital of Liege, Belgium |
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5 * Copyright (C) 2017-2020 Osimis S.A., Belgium |
224 | 6 * |
7 * This program is free software: you can redistribute it and/or | |
8 * modify it under the terms of the GNU General Public License as | |
9 * published by the Free Software Foundation, either version 3 of the | |
10 * License, or (at your option) any later version. | |
11 * | |
12 * In addition, as a special exception, the copyright holders of this | |
13 * program give permission to link the code of its release with the | |
14 * OpenSSL project's "OpenSSL" library (or with modified versions of it | |
15 * that use the same license as the "OpenSSL" library), and distribute | |
16 * the linked executables. You must obey the GNU General Public License | |
17 * in all respects for all of the code used other than "OpenSSL". If you | |
18 * modify file(s) with this exception, you may extend this exception to | |
19 * your version of the file(s), but you are not obligated to do so. If | |
20 * you do not wish to do so, delete this exception statement from your | |
21 * version. If you delete this exception statement from all source files | |
22 * in the program, then also delete it here. | |
23 * | |
24 * This program is distributed in the hope that it will be useful, but | |
25 * WITHOUT ANY WARRANTY; without even the implied warranty of | |
26 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU | |
27 * General Public License for more details. | |
28 * | |
29 * You should have received a copy of the GNU General Public License | |
30 * along with this program. If not, see <http://www.gnu.org/licenses/>. | |
31 **/ | |
32 | |
33 | |
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34 #include "PrecompiledHeadersServer.h" |
224 | 35 #include "ServerContext.h" |
36 | |
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37 #include "../Core/DicomParsing/Internals/DicomImageDecoder.h" |
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38 #include "../Core/Cache/SharedArchive.h" |
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39 #include "../Core/DicomParsing/DcmtkTranscoder.h" |
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40 #include "../Core/DicomParsing/FromDcmtkBridge.h" |
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41 #include "../Core/FileStorage/StorageAccessor.h" |
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42 #include "../Core/HttpServer/FilesystemHttpSender.h" |
1525 | 43 #include "../Core/HttpServer/HttpStreamTranscoder.h" |
3097 | 44 #include "../Core/JobsEngine/SetOfInstancesJob.h" |
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45 #include "../Core/Logging.h" |
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46 #include "../Core/MetricsRegistry.h" |
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47 #include "../Plugins/Engine/OrthancPlugins.h" |
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48 |
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49 #include "OrthancConfiguration.h" |
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50 #include "OrthancRestApi/OrthancRestApi.h" |
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51 #include "Search/DatabaseLookup.h" |
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52 #include "ServerJobs/OrthancJobUnserializer.h" |
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53 #include "ServerToolbox.h" |
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54 #include "StorageCommitmentReports.h" |
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55 |
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56 #include <EmbeddedResources.h> |
794 | 57 #include <dcmtk/dcmdata/dcfilefo.h> |
224 | 58 |
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59 |
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60 |
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61 #define ENABLE_DICOM_CACHE 1 |
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62 |
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63 static const size_t DICOM_CACHE_SIZE = 2; |
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64 |
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65 /** |
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66 * IMPORTANT: We make the assumption that the same instance of |
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67 * FileStorage can be accessed from multiple threads. This seems OK |
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68 * since the filesystem implements the required locking mechanisms, |
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69 * but maybe a read-writer lock on the "FileStorage" could be |
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70 * useful. Conversely, "ServerIndex" already implements mutex-based |
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71 * locking. |
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72 **/ |
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73 |
224 | 74 namespace Orthanc |
75 { | |
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76 void ServerContext::ChangeThread(ServerContext* that, |
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77 unsigned int sleepDelay) |
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78 { |
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79 while (!that->done_) |
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80 { |
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81 std::unique_ptr<IDynamicObject> obj(that->pendingChanges_.Dequeue(sleepDelay)); |
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82 |
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83 if (obj.get() != NULL) |
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84 { |
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85 const ServerIndexChange& change = dynamic_cast<const ServerIndexChange&>(*obj.get()); |
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86 |
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87 boost::shared_lock<boost::shared_mutex> lock(that->listenersMutex_); |
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88 for (ServerListeners::iterator it = that->listeners_.begin(); |
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89 it != that->listeners_.end(); ++it) |
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90 { |
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91 try |
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92 { |
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93 try |
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94 { |
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95 it->GetListener().SignalChange(change); |
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96 } |
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97 catch (std::bad_alloc&) |
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98 { |
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99 LOG(ERROR) << "Not enough memory while signaling a change"; |
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100 } |
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101 catch (...) |
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102 { |
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103 throw OrthancException(ErrorCode_InternalError); |
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104 } |
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105 } |
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106 catch (OrthancException& e) |
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107 { |
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108 LOG(ERROR) << "Error in the " << it->GetDescription() |
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109 << " callback while signaling a change: " << e.What() |
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110 << " (code " << e.GetErrorCode() << ")"; |
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111 } |
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112 } |
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113 } |
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114 } |
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115 } |
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116 |
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117 |
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118 void ServerContext::SaveJobsThread(ServerContext* that, |
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119 unsigned int sleepDelay) |
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120 { |
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121 static const boost::posix_time::time_duration PERIODICITY = |
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122 boost::posix_time::seconds(10); |
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123 |
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124 boost::posix_time::ptime next = |
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125 boost::posix_time::microsec_clock::universal_time() + PERIODICITY; |
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126 |
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127 while (!that->done_) |
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128 { |
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129 boost::this_thread::sleep(boost::posix_time::milliseconds(sleepDelay)); |
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130 |
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131 if (that->haveJobsChanged_ || |
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132 boost::posix_time::microsec_clock::universal_time() >= next) |
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133 { |
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134 that->haveJobsChanged_ = false; |
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135 that->SaveJobsEngine(); |
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136 next = boost::posix_time::microsec_clock::universal_time() + PERIODICITY; |
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137 } |
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138 } |
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139 } |
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140 |
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141 |
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142 void ServerContext::SignalJobSubmitted(const std::string& jobId) |
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143 { |
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144 haveJobsChanged_ = true; |
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145 mainLua_.SignalJobSubmitted(jobId); |
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146 } |
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147 |
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148 |
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149 void ServerContext::SignalJobSuccess(const std::string& jobId) |
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150 { |
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151 haveJobsChanged_ = true; |
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152 mainLua_.SignalJobSuccess(jobId); |
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153 } |
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154 |
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155 |
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156 void ServerContext::SignalJobFailure(const std::string& jobId) |
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157 { |
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158 haveJobsChanged_ = true; |
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159 mainLua_.SignalJobFailure(jobId); |
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160 } |
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161 |
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162 |
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163 void ServerContext::SetupJobsEngine(bool unitTesting, |
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164 bool loadJobsFromDatabase) |
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165 { |
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166 if (loadJobsFromDatabase) |
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167 { |
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168 std::string serialized; |
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169 if (index_.LookupGlobalProperty(serialized, GlobalProperty_JobsRegistry)) |
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170 { |
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171 LOG(WARNING) << "Reloading the jobs from the last execution of Orthanc"; |
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172 OrthancJobUnserializer unserializer(*this); |
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173 |
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174 try |
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175 { |
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176 jobsEngine_.LoadRegistryFromString(unserializer, serialized); |
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177 } |
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178 catch (OrthancException& e) |
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179 { |
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180 LOG(WARNING) << "Cannot unserialize the jobs engine, starting anyway: " << e.What(); |
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181 } |
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182 } |
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183 else |
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184 { |
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185 LOG(INFO) << "The last execution of Orthanc has archived no job"; |
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186 } |
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187 } |
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188 else |
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189 { |
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190 LOG(INFO) << "Not reloading the jobs from the last execution of Orthanc"; |
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191 } |
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192 |
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193 jobsEngine_.GetRegistry().SetObserver(*this); |
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194 jobsEngine_.Start(); |
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195 isJobsEngineUnserialized_ = true; |
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196 |
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197 saveJobsThread_ = boost::thread(SaveJobsThread, this, (unitTesting ? 20 : 100)); |
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198 } |
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199 |
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200 |
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201 void ServerContext::SaveJobsEngine() |
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202 { |
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203 if (saveJobs_) |
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204 { |
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205 VLOG(1) << "Serializing the content of the jobs engine"; |
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206 |
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207 try |
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208 { |
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209 Json::Value value; |
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210 jobsEngine_.GetRegistry().Serialize(value); |
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211 |
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212 Json::FastWriter writer; |
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213 std::string serialized = writer.write(value); |
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214 |
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215 index_.SetGlobalProperty(GlobalProperty_JobsRegistry, serialized); |
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216 } |
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217 catch (OrthancException& e) |
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218 { |
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219 LOG(ERROR) << "Cannot serialize the jobs engine: " << e.What(); |
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220 } |
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221 } |
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222 } |
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223 |
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224 |
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225 ServerContext::ServerContext(IDatabaseWrapper& database, |
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226 IStorageArea& area, |
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227 bool unitTesting, |
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228 size_t maxCompletedJobs) : |
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229 index_(*this, database, (unitTesting ? 20 : 500)), |
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230 area_(area), |
656 | 231 compressionEnabled_(false), |
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232 storeMD5_(true), |
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233 provider_(*this), |
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234 dicomCache_(provider_, DICOM_CACHE_SIZE), |
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235 mainLua_(*this), |
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236 filterLua_(*this), |
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237 luaListener_(*this), |
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238 jobsEngine_(maxCompletedJobs), |
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239 #if ORTHANC_ENABLE_PLUGINS == 1 |
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240 plugins_(NULL), |
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241 #endif |
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242 done_(false), |
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243 haveJobsChanged_(false), |
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244 isJobsEngineUnserialized_(false), |
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245 metricsRegistry_(new MetricsRegistry), |
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246 isHttpServerSecure_(true), |
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247 isExecuteLuaEnabled_(false), |
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248 overwriteInstances_(false), |
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249 dcmtkTranscoder_(new DcmtkTranscoder), |
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250 isIngestTranscoding_(false) |
224 | 251 { |
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252 try |
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253 { |
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254 unsigned int lossyQuality; |
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255 |
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256 { |
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257 OrthancConfiguration::ReaderLock lock; |
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258 |
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259 queryRetrieveArchive_.reset( |
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260 new SharedArchive(lock.GetConfiguration().GetUnsignedIntegerParameter("QueryRetrieveSize", 100))); |
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261 mediaArchive_.reset( |
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262 new SharedArchive(lock.GetConfiguration().GetUnsignedIntegerParameter("MediaArchiveSize", 1))); |
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263 defaultLocalAet_ = lock.GetConfiguration().GetStringParameter("DicomAet", "ORTHANC"); |
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264 jobsEngine_.SetWorkersCount(lock.GetConfiguration().GetUnsignedIntegerParameter("ConcurrentJobs", 2)); |
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265 saveJobs_ = lock.GetConfiguration().GetBooleanParameter("SaveJobs", true); |
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266 metricsRegistry_->SetEnabled(lock.GetConfiguration().GetBooleanParameter("MetricsEnabled", true)); |
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267 |
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268 // New configuration options in Orthanc 1.5.1 |
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269 findStorageAccessMode_ = StringToFindStorageAccessMode(lock.GetConfiguration().GetStringParameter("StorageAccessOnFind", "Always")); |
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270 limitFindInstances_ = lock.GetConfiguration().GetUnsignedIntegerParameter("LimitFindInstances", 0); |
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271 limitFindResults_ = lock.GetConfiguration().GetUnsignedIntegerParameter("LimitFindResults", 0); |
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272 |
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273 // New configuration option in Orthanc 1.6.0 |
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274 storageCommitmentReports_.reset(new StorageCommitmentReports(lock.GetConfiguration().GetUnsignedIntegerParameter("StorageCommitmentReportsSize", 100))); |
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275 |
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276 // New options in Orthanc 1.7.0 |
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277 transcodeDicomProtocol_ = lock.GetConfiguration().GetBooleanParameter("TranscodeDicomProtocol", true); |
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278 builtinDecoderTranscoderOrder_ = StringToBuiltinDecoderTranscoderOrder(lock.GetConfiguration().GetStringParameter("BuiltinDecoderTranscoderOrder", "After")); |
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279 lossyQuality = lock.GetConfiguration().GetUnsignedIntegerParameter("DicomLossyTranscodingQuality", 90); |
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280 |
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281 std::string s; |
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282 if (lock.GetConfiguration().LookupStringParameter(s, "IngestTranscoding")) |
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283 { |
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284 if (LookupTransferSyntax(ingestTransferSyntax_, s)) |
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285 { |
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286 isIngestTranscoding_ = true; |
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287 LOG(WARNING) << "Incoming DICOM instances will automatically be transcoded to " |
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288 << "transfer syntax: " << GetTransferSyntaxUid(ingestTransferSyntax_); |
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289 } |
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290 else |
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291 { |
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292 throw OrthancException(ErrorCode_ParameterOutOfRange, |
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293 "Unknown transfer syntax for ingest transcoding: " + s); |
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294 } |
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295 } |
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296 else |
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297 { |
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298 isIngestTranscoding_ = false; |
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299 LOG(INFO) << "Automated transcoding of incoming DICOM instances is disabled"; |
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300 } |
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301 } |
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302 |
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303 jobsEngine_.SetThreadSleep(unitTesting ? 20 : 200); |
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304 |
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305 listeners_.push_back(ServerListener(luaListener_, "Lua")); |
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306 changeThread_ = boost::thread(ChangeThread, this, (unitTesting ? 20 : 100)); |
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307 |
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308 dynamic_cast<DcmtkTranscoder&>(*dcmtkTranscoder_).SetLossyQuality(lossyQuality); |
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309 } |
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310 catch (OrthancException&) |
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311 { |
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312 Stop(); |
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313 throw; |
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314 } |
224 | 315 } |
316 | |
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317 |
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318 |
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319 ServerContext::~ServerContext() |
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320 { |
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321 if (!done_) |
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322 { |
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323 LOG(ERROR) << "INTERNAL ERROR: ServerContext::Stop() should be invoked manually to avoid mess in the destruction order!"; |
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324 Stop(); |
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325 } |
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326 } |
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327 |
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328 |
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329 void ServerContext::Stop() |
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330 { |
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331 if (!done_) |
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332 { |
1459 | 333 { |
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334 boost::unique_lock<boost::shared_mutex> lock(listenersMutex_); |
1459 | 335 listeners_.clear(); |
336 } | |
337 | |
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338 done_ = true; |
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339 |
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340 if (changeThread_.joinable()) |
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341 { |
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342 changeThread_.join(); |
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343 } |
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344 |
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345 if (saveJobsThread_.joinable()) |
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346 { |
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347 saveJobsThread_.join(); |
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348 } |
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349 |
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350 jobsEngine_.GetRegistry().ResetObserver(); |
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351 |
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352 if (isJobsEngineUnserialized_) |
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353 { |
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354 // Avoid losing jobs if the JobsRegistry cannot be unserialized |
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355 SaveJobsEngine(); |
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356 } |
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357 |
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358 // Do not change the order below! |
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359 jobsEngine_.Stop(); |
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360 index_.Stop(); |
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361 } |
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362 } |
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363 |
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364 |
236 | 365 void ServerContext::SetCompressionEnabled(bool enabled) |
366 { | |
367 if (enabled) | |
368 LOG(WARNING) << "Disk compression is enabled"; | |
369 else | |
370 LOG(WARNING) << "Disk compression is disabled"; | |
371 | |
372 compressionEnabled_ = enabled; | |
373 } | |
374 | |
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375 |
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376 void ServerContext::RemoveFile(const std::string& fileUuid, |
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377 FileContentType type) |
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378 { |
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379 StorageAccessor accessor(area_, GetMetricsRegistry()); |
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380 accessor.Remove(fileUuid, type); |
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381 } |
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382 |
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383 |
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384 StoreStatus ServerContext::StoreAfterTranscoding(std::string& resultPublicId, |
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385 DicomInstanceToStore& dicom, |
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386 StoreInstanceMode mode) |
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387 { |
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388 bool overwrite; |
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389 switch (mode) |
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390 { |
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391 case StoreInstanceMode_Default: |
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392 overwrite = overwriteInstances_; |
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393 break; |
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394 |
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395 case StoreInstanceMode_OverwriteDuplicate: |
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396 overwrite = true; |
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397 break; |
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398 |
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399 case StoreInstanceMode_IgnoreDuplicate: |
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400 overwrite = false; |
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401 break; |
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402 |
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403 default: |
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404 throw OrthancException(ErrorCode_ParameterOutOfRange); |
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405 } |
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406 |
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407 try |
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408 { |
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409 MetricsRegistry::Timer timer(GetMetricsRegistry(), "orthanc_store_dicom_duration_ms"); |
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410 StorageAccessor accessor(area_, GetMetricsRegistry()); |
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411 |
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412 resultPublicId = dicom.GetHasher().HashInstance(); |
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413 |
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414 Json::Value simplifiedTags; |
2120 | 415 ServerToolbox::SimplifyTags(simplifiedTags, dicom.GetJson(), DicomToJsonFormat_Human); |
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416 |
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417 // Test if the instance must be filtered out |
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418 bool accepted = true; |
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419 |
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420 { |
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421 boost::shared_lock<boost::shared_mutex> lock(listenersMutex_); |
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422 |
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423 for (ServerListeners::iterator it = listeners_.begin(); it != listeners_.end(); ++it) |
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424 { |
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425 try |
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426 { |
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427 if (!it->GetListener().FilterIncomingInstance(dicom, simplifiedTags)) |
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428 { |
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429 accepted = false; |
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430 break; |
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431 } |
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432 } |
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433 catch (OrthancException& e) |
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434 { |
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435 LOG(ERROR) << "Error in the " << it->GetDescription() |
2135
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436 << " callback while receiving an instance: " << e.What() |
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437 << " (code " << e.GetErrorCode() << ")"; |
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438 throw; |
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439 } |
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440 } |
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441 } |
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442 |
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443 if (!accepted) |
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444 { |
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445 LOG(INFO) << "An incoming instance has been discarded by the filter"; |
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446 return StoreStatus_FilteredOut; |
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447 } |
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448 |
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449 { |
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450 // Remove the file from the DicomCache (useful if |
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451 // "OverwriteInstances" is set to "true") |
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452 boost::mutex::scoped_lock lock(dicomCacheMutex_); |
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453 dicomCache_.Invalidate(resultPublicId); |
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454 } |
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455 |
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456 // TODO Should we use "gzip" instead? |
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457 CompressionType compression = (compressionEnabled_ ? CompressionType_ZlibWithSize : CompressionType_None); |
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458 |
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459 FileInfo dicomInfo = accessor.Write(dicom.GetBufferData(), dicom.GetBufferSize(), |
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460 FileContentType_Dicom, compression, storeMD5_); |
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461 FileInfo jsonInfo = accessor.Write(dicom.GetJson().toStyledString(), |
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462 FileContentType_DicomAsJson, compression, storeMD5_); |
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463 |
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464 ServerIndex::Attachments attachments; |
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465 attachments.push_back(dicomInfo); |
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466 attachments.push_back(jsonInfo); |
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467 |
1067
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468 typedef std::map<MetadataType, std::string> InstanceMetadata; |
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469 InstanceMetadata instanceMetadata; |
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470 StoreStatus status = index_.Store( |
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471 instanceMetadata, dicom, attachments, overwrite); |
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472 |
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473 // Only keep the metadata for the "instance" level |
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474 dicom.GetMetadata().clear(); |
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475 |
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476 for (InstanceMetadata::const_iterator it = instanceMetadata.begin(); |
1304 | 477 it != instanceMetadata.end(); ++it) |
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478 { |
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479 dicom.GetMetadata().insert(std::make_pair(std::make_pair(ResourceType_Instance, it->first), |
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480 it->second)); |
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481 } |
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482 |
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483 if (status != StoreStatus_Success) |
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484 { |
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485 accessor.Remove(dicomInfo); |
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486 accessor.Remove(jsonInfo); |
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487 } |
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488 |
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489 switch (status) |
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490 { |
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491 case StoreStatus_Success: |
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492 LOG(INFO) << "New instance stored"; |
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|
493 break; |
a226e0959d8b
DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1002
diff
changeset
|
494 |
a226e0959d8b
DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1002
diff
changeset
|
495 case StoreStatus_AlreadyStored: |
a226e0959d8b
DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1002
diff
changeset
|
496 LOG(INFO) << "Already stored"; |
a226e0959d8b
DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1002
diff
changeset
|
497 break; |
a226e0959d8b
DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1002
diff
changeset
|
498 |
a226e0959d8b
DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1002
diff
changeset
|
499 case StoreStatus_Failure: |
a226e0959d8b
DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1002
diff
changeset
|
500 LOG(ERROR) << "Store failure"; |
a226e0959d8b
DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1002
diff
changeset
|
501 break; |
a226e0959d8b
DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1002
diff
changeset
|
502 |
a226e0959d8b
DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1002
diff
changeset
|
503 default: |
a226e0959d8b
DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1002
diff
changeset
|
504 // This should never happen |
a226e0959d8b
DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1002
diff
changeset
|
505 break; |
a226e0959d8b
DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1002
diff
changeset
|
506 } |
a226e0959d8b
DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1002
diff
changeset
|
507 |
a226e0959d8b
DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1002
diff
changeset
|
508 if (status == StoreStatus_Success || |
a226e0959d8b
DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1002
diff
changeset
|
509 status == StoreStatus_AlreadyStored) |
a226e0959d8b
DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1002
diff
changeset
|
510 { |
3947
cf6eb4fc6841
fix issue 179: use a shared mutex to avoid deadlock in python plugins
Alain Mazy <alain@mazy.be>
parents:
3945
diff
changeset
|
511 boost::shared_lock<boost::shared_mutex> lock(listenersMutex_); |
1453
c0bdc47165ef
code to warn about possible threading problems
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1447
diff
changeset
|
512 |
1433
461e7554bff7
refactoring: LuaScripting
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1427
diff
changeset
|
513 for (ServerListeners::iterator it = listeners_.begin(); it != listeners_.end(); ++it) |
1066
bb82e5e818e9
OnStoredInstance callback in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1065
diff
changeset
|
514 { |
bb82e5e818e9
OnStoredInstance callback in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1065
diff
changeset
|
515 try |
bb82e5e818e9
OnStoredInstance callback in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1065
diff
changeset
|
516 { |
1574
0c29ebe80ac9
give access to full request origin in ReceivedInstanceFilter (Lua)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1550
diff
changeset
|
517 it->GetListener().SignalStoredInstance(resultPublicId, dicom, simplifiedTags); |
1066
bb82e5e818e9
OnStoredInstance callback in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1065
diff
changeset
|
518 } |
bb82e5e818e9
OnStoredInstance callback in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1065
diff
changeset
|
519 catch (OrthancException& e) |
bb82e5e818e9
OnStoredInstance callback in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1065
diff
changeset
|
520 { |
1433
461e7554bff7
refactoring: LuaScripting
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1427
diff
changeset
|
521 LOG(ERROR) << "Error in the " << it->GetDescription() |
2135
cadfe0a2a393
fix in the sample basic plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2134
diff
changeset
|
522 << " callback while receiving an instance: " << e.What() |
cadfe0a2a393
fix in the sample basic plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2134
diff
changeset
|
523 << " (code " << e.GetErrorCode() << ")"; |
1066
bb82e5e818e9
OnStoredInstance callback in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1065
diff
changeset
|
524 } |
bb82e5e818e9
OnStoredInstance callback in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1065
diff
changeset
|
525 } |
1004
a226e0959d8b
DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1002
diff
changeset
|
526 } |
a226e0959d8b
DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1002
diff
changeset
|
527 |
a226e0959d8b
DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1002
diff
changeset
|
528 return status; |
a226e0959d8b
DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1002
diff
changeset
|
529 } |
a226e0959d8b
DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1002
diff
changeset
|
530 catch (OrthancException& e) |
a226e0959d8b
DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1002
diff
changeset
|
531 { |
a226e0959d8b
DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1002
diff
changeset
|
532 if (e.GetErrorCode() == ErrorCode_InexistentTag) |
a226e0959d8b
DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1002
diff
changeset
|
533 { |
2380
96b3ec054b69
reorganization in macros
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2304
diff
changeset
|
534 dicom.GetSummary().LogMissingTagsForStore(); |
1004
a226e0959d8b
DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1002
diff
changeset
|
535 } |
a226e0959d8b
DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1002
diff
changeset
|
536 |
a226e0959d8b
DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1002
diff
changeset
|
537 throw; |
a226e0959d8b
DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1002
diff
changeset
|
538 } |
a226e0959d8b
DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1002
diff
changeset
|
539 } |
a226e0959d8b
DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1002
diff
changeset
|
540 |
a226e0959d8b
DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1002
diff
changeset
|
541 |
3912
7610af1532c3
prototyping automated transcoding of incoming DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3911
diff
changeset
|
542 StoreStatus ServerContext::Store(std::string& resultPublicId, |
7610af1532c3
prototyping automated transcoding of incoming DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3911
diff
changeset
|
543 DicomInstanceToStore& dicom, |
7610af1532c3
prototyping automated transcoding of incoming DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3911
diff
changeset
|
544 StoreInstanceMode mode) |
7610af1532c3
prototyping automated transcoding of incoming DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3911
diff
changeset
|
545 { |
3939
c205f670098e
new configuration options: BuiltinDecoderTranscoderOrder and IngestTranscoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3938
diff
changeset
|
546 if (!isIngestTranscoding_) |
3912
7610af1532c3
prototyping automated transcoding of incoming DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3911
diff
changeset
|
547 { |
3941
771dbd9eb3bd
class CleaningInstancesJob to share cleaning code by merge/split jobs
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3939
diff
changeset
|
548 // No automated transcoding. This was the only path in Orthanc <= 1.6.1. |
3912
7610af1532c3
prototyping automated transcoding of incoming DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3911
diff
changeset
|
549 return StoreAfterTranscoding(resultPublicId, dicom, mode); |
7610af1532c3
prototyping automated transcoding of incoming DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3911
diff
changeset
|
550 } |
7610af1532c3
prototyping automated transcoding of incoming DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3911
diff
changeset
|
551 else |
7610af1532c3
prototyping automated transcoding of incoming DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3911
diff
changeset
|
552 { |
3939
c205f670098e
new configuration options: BuiltinDecoderTranscoderOrder and IngestTranscoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3938
diff
changeset
|
553 // Automated transcoding of incoming DICOM files |
3945
0b3256c3ee14
simplified IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3944
diff
changeset
|
554 |
3912
7610af1532c3
prototyping automated transcoding of incoming DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3911
diff
changeset
|
555 DicomTransferSyntax sourceSyntax; |
7610af1532c3
prototyping automated transcoding of incoming DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3911
diff
changeset
|
556 if (!FromDcmtkBridge::LookupOrthancTransferSyntax( |
7610af1532c3
prototyping automated transcoding of incoming DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3911
diff
changeset
|
557 sourceSyntax, dicom.GetParsedDicomFile().GetDcmtkObject()) || |
3939
c205f670098e
new configuration options: BuiltinDecoderTranscoderOrder and IngestTranscoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3938
diff
changeset
|
558 sourceSyntax == ingestTransferSyntax_) |
3912
7610af1532c3
prototyping automated transcoding of incoming DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3911
diff
changeset
|
559 { |
7610af1532c3
prototyping automated transcoding of incoming DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3911
diff
changeset
|
560 // No transcoding |
7610af1532c3
prototyping automated transcoding of incoming DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3911
diff
changeset
|
561 return StoreAfterTranscoding(resultPublicId, dicom, mode); |
7610af1532c3
prototyping automated transcoding of incoming DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3911
diff
changeset
|
562 } |
7610af1532c3
prototyping automated transcoding of incoming DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3911
diff
changeset
|
563 else |
7610af1532c3
prototyping automated transcoding of incoming DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3911
diff
changeset
|
564 { |
7610af1532c3
prototyping automated transcoding of incoming DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3911
diff
changeset
|
565 std::set<DicomTransferSyntax> syntaxes; |
3939
c205f670098e
new configuration options: BuiltinDecoderTranscoderOrder and IngestTranscoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3938
diff
changeset
|
566 syntaxes.insert(ingestTransferSyntax_); |
3912
7610af1532c3
prototyping automated transcoding of incoming DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3911
diff
changeset
|
567 |
3945
0b3256c3ee14
simplified IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3944
diff
changeset
|
568 IDicomTranscoder::DicomImage source; |
0b3256c3ee14
simplified IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3944
diff
changeset
|
569 source.SetExternalBuffer(dicom.GetBufferData(), dicom.GetBufferSize()); |
0b3256c3ee14
simplified IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3944
diff
changeset
|
570 |
0b3256c3ee14
simplified IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3944
diff
changeset
|
571 IDicomTranscoder::DicomImage transcoded; |
3951
5fe8c6d3212e
removed useless information "hasSopInstanceUidChanged"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3947
diff
changeset
|
572 if (Transcode(transcoded, source, syntaxes, true /* allow new SOP instance UID */)) |
3912
7610af1532c3
prototyping automated transcoding of incoming DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3911
diff
changeset
|
573 { |
3945
0b3256c3ee14
simplified IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3944
diff
changeset
|
574 std::unique_ptr<ParsedDicomFile> tmp(transcoded.ReleaseAsParsedDicomFile()); |
0b3256c3ee14
simplified IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3944
diff
changeset
|
575 |
3912
7610af1532c3
prototyping automated transcoding of incoming DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3911
diff
changeset
|
576 DicomInstanceToStore toStore; |
7610af1532c3
prototyping automated transcoding of incoming DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3911
diff
changeset
|
577 toStore.SetParsedDicomFile(*tmp); |
7610af1532c3
prototyping automated transcoding of incoming DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3911
diff
changeset
|
578 toStore.SetOrigin(dicom.GetOrigin()); |
7610af1532c3
prototyping automated transcoding of incoming DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3911
diff
changeset
|
579 |
7610af1532c3
prototyping automated transcoding of incoming DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3911
diff
changeset
|
580 StoreStatus ok = StoreAfterTranscoding(resultPublicId, toStore, mode); |
3938 | 581 assert(resultPublicId == tmp->GetHasher().HashInstance()); |
582 | |
3912
7610af1532c3
prototyping automated transcoding of incoming DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3911
diff
changeset
|
583 return ok; |
7610af1532c3
prototyping automated transcoding of incoming DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3911
diff
changeset
|
584 } |
3945
0b3256c3ee14
simplified IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3944
diff
changeset
|
585 else |
0b3256c3ee14
simplified IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3944
diff
changeset
|
586 { |
0b3256c3ee14
simplified IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3944
diff
changeset
|
587 // Cannot transcode => store the original file |
0b3256c3ee14
simplified IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3944
diff
changeset
|
588 return StoreAfterTranscoding(resultPublicId, dicom, mode); |
0b3256c3ee14
simplified IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3944
diff
changeset
|
589 } |
3912
7610af1532c3
prototyping automated transcoding of incoming DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3911
diff
changeset
|
590 } |
7610af1532c3
prototyping automated transcoding of incoming DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3911
diff
changeset
|
591 } |
7610af1532c3
prototyping automated transcoding of incoming DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3911
diff
changeset
|
592 } |
7610af1532c3
prototyping automated transcoding of incoming DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3911
diff
changeset
|
593 |
7610af1532c3
prototyping automated transcoding of incoming DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3911
diff
changeset
|
594 |
1146
200fcac0deb4
optimization for access to attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1145
diff
changeset
|
595 void ServerContext::AnswerAttachment(RestApiOutput& output, |
1700
f5ddbd9239dd
New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1632
diff
changeset
|
596 const std::string& resourceId, |
1146
200fcac0deb4
optimization for access to attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1145
diff
changeset
|
597 FileContentType content) |
226
8a26a8e85edf
refactoring to read files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
224
diff
changeset
|
598 { |
232
5368bbe813cf
refactoring of attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
227
diff
changeset
|
599 FileInfo attachment; |
1700
f5ddbd9239dd
New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1632
diff
changeset
|
600 if (!index_.LookupAttachment(attachment, resourceId, content)) |
232
5368bbe813cf
refactoring of attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
227
diff
changeset
|
601 { |
1700
f5ddbd9239dd
New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1632
diff
changeset
|
602 throw OrthancException(ErrorCode_UnknownResource); |
236 | 603 } |
226
8a26a8e85edf
refactoring to read files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
224
diff
changeset
|
604 |
3175
574890d14c92
new metrics: orthanc_store_dicom_duration_ms, orthanc_storage_[create|read|remove]_duration_ms
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3174
diff
changeset
|
605 StorageAccessor accessor(area_, GetMetricsRegistry()); |
1772
53e045b5a8ec
MIME content type can be associated to custom attachments (cf. "UserContentType")
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1758
diff
changeset
|
606 accessor.AnswerFile(output, attachment, GetFileContentMime(content)); |
226
8a26a8e85edf
refactoring to read files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
224
diff
changeset
|
607 } |
8a26a8e85edf
refactoring to read files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
224
diff
changeset
|
608 |
8a26a8e85edf
refactoring to read files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
224
diff
changeset
|
609 |
1700
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610 void ServerContext::ChangeAttachmentCompression(const std::string& resourceId, |
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611 FileContentType attachmentType, |
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612 CompressionType compression) |
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613 { |
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614 LOG(INFO) << "Changing compression type for attachment " |
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615 << EnumerationToString(attachmentType) |
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616 << " of resource " << resourceId << " to " |
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617 << compression; |
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618 |
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619 FileInfo attachment; |
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620 if (!index_.LookupAttachment(attachment, resourceId, attachmentType)) |
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621 { |
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622 throw OrthancException(ErrorCode_UnknownResource); |
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623 } |
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624 |
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625 if (attachment.GetCompressionType() == compression) |
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626 { |
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627 // Nothing to do |
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628 return; |
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629 } |
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630 |
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631 std::string content; |
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632 |
3175
574890d14c92
new metrics: orthanc_store_dicom_duration_ms, orthanc_storage_[create|read|remove]_duration_ms
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633 StorageAccessor accessor(area_, GetMetricsRegistry()); |
1700
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634 accessor.Read(content, attachment); |
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635 |
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636 FileInfo modified = accessor.Write(content.empty() ? NULL : content.c_str(), |
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637 content.size(), attachmentType, compression, storeMD5_); |
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638 |
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639 try |
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640 { |
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641 StoreStatus status = index_.AddAttachment(modified, resourceId); |
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642 if (status != StoreStatus_Success) |
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643 { |
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644 accessor.Remove(modified); |
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645 throw OrthancException(ErrorCode_Database); |
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646 } |
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647 } |
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648 catch (OrthancException&) |
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649 { |
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650 accessor.Remove(modified); |
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651 throw; |
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652 } |
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653 } |
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654 |
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655 |
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656 void ServerContext::ReadDicomAsJsonInternal(std::string& result, |
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657 const std::string& instancePublicId) |
2127 | 658 { |
2128
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659 FileInfo attachment; |
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660 if (index_.LookupAttachment(attachment, instancePublicId, FileContentType_DicomAsJson)) |
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661 { |
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662 ReadAttachment(result, attachment); |
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663 } |
2409
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664 else |
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665 { |
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666 // The "DICOM as JSON" summary is not available from the Orthanc |
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667 // store (most probably deleted), reconstruct it from the DICOM file |
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668 std::string dicom; |
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669 ReadDicom(dicom, instancePublicId); |
2128
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670 |
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671 LOG(INFO) << "Reconstructing the missing DICOM-as-JSON summary for instance: " |
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672 << instancePublicId; |
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673 |
2409
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674 ParsedDicomFile parsed(dicom); |
2128
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675 |
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676 Json::Value summary; |
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677 parsed.DatasetToJson(summary); |
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678 |
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679 result = summary.toStyledString(); |
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680 |
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681 if (!AddAttachment(instancePublicId, FileContentType_DicomAsJson, |
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682 result.c_str(), result.size())) |
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683 { |
2956 | 684 throw OrthancException(ErrorCode_InternalError, |
685 "Cannot associate the DICOM-as-JSON summary to instance: " + instancePublicId); | |
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686 } |
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687 } |
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688 } |
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689 |
2128
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690 |
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691 void ServerContext::ReadDicomAsJson(std::string& result, |
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692 const std::string& instancePublicId, |
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693 const std::set<DicomTag>& ignoreTagLength) |
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694 { |
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695 if (ignoreTagLength.empty()) |
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696 { |
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697 ReadDicomAsJsonInternal(result, instancePublicId); |
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698 } |
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699 else |
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700 { |
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701 Json::Value tmp; |
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702 ReadDicomAsJson(tmp, instancePublicId, ignoreTagLength); |
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703 result = tmp.toStyledString(); |
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704 } |
2127 | 705 } |
706 | |
707 | |
2124 | 708 void ServerContext::ReadDicomAsJson(Json::Value& result, |
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709 const std::string& instancePublicId, |
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710 const std::set<DicomTag>& ignoreTagLength) |
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711 { |
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712 if (ignoreTagLength.empty()) |
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713 { |
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714 std::string tmp; |
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715 ReadDicomAsJsonInternal(tmp, instancePublicId); |
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716 |
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717 Json::Reader reader; |
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|
718 if (!reader.parse(tmp, result)) |
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719 { |
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720 throw OrthancException(ErrorCode_CorruptedFile); |
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721 } |
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722 } |
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723 else |
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724 { |
2409
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725 // The "DicomAsJson" attachment might have stored some tags as |
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726 // "too long". We are forced to re-parse the DICOM file. |
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727 std::string dicom; |
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728 ReadDicom(dicom, instancePublicId); |
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729 |
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730 ParsedDicomFile parsed(dicom); |
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731 parsed.DatasetToJson(result, ignoreTagLength); |
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732 } |
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733 } |
227
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734 |
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735 |
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736 void ServerContext::ReadAttachment(std::string& result, |
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737 const std::string& instancePublicId, |
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738 FileContentType content, |
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739 bool uncompressIfNeeded) |
227
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740 { |
232
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741 FileInfo attachment; |
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742 if (!index_.LookupAttachment(attachment, instancePublicId, content)) |
227
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743 { |
2956 | 744 throw OrthancException(ErrorCode_InternalError, |
745 "Unable to read attachment " + EnumerationToString(content) + | |
746 " of instance " + instancePublicId); | |
227
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747 } |
1550 | 748 |
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749 assert(attachment.GetContentType() == content); |
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750 |
1550 | 751 if (uncompressIfNeeded) |
752 { | |
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753 ReadAttachment(result, attachment); |
1550 | 754 } |
755 else | |
756 { | |
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757 // Do not uncompress the content of the storage area, return the |
1550 | 758 // raw data |
3175
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759 StorageAccessor accessor(area_, GetMetricsRegistry()); |
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760 accessor.ReadRaw(result, attachment); |
1550 | 761 } |
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762 } |
285
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763 |
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764 |
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765 void ServerContext::ReadAttachment(std::string& result, |
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766 const FileInfo& attachment) |
1778
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767 { |
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768 // This will decompress the attachment |
3175
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769 StorageAccessor accessor(area_, GetMetricsRegistry()); |
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770 accessor.Read(result, attachment); |
1778
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771 } |
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772 |
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773 |
285
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774 IDynamicObject* ServerContext::DicomCacheProvider::Provide(const std::string& instancePublicId) |
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775 { |
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776 std::string content; |
2124 | 777 context_.ReadDicom(content, instancePublicId); |
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778 return new ParsedDicomFile(content); |
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779 } |
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780 |
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781 |
778
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782 ServerContext::DicomCacheLocker::DicomCacheLocker(ServerContext& that, |
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783 const std::string& instancePublicId) : |
1129
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784 that_(that), |
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785 lock_(that_.dicomCacheMutex_) |
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786 { |
291
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787 #if ENABLE_DICOM_CACHE == 0 |
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788 static std::unique_ptr<IDynamicObject> p; |
3836 | 789 p.reset(that_.provider_.Provide(instancePublicId)); |
778
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790 dicom_ = dynamic_cast<ParsedDicomFile*>(p.get()); |
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791 #else |
778
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792 dicom_ = &dynamic_cast<ParsedDicomFile&>(that_.dicomCache_.Access(instancePublicId)); |
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793 #endif |
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794 } |
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795 |
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796 |
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797 ServerContext::DicomCacheLocker::~DicomCacheLocker() |
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798 { |
285
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799 } |
304 | 800 |
801 | |
695
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802 void ServerContext::SetStoreMD5ForAttachments(bool storeMD5) |
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803 { |
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804 LOG(INFO) << "Storing MD5 for attachments: " << (storeMD5 ? "yes" : "no"); |
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805 storeMD5_ = storeMD5; |
695
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806 } |
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807 |
699
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808 |
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809 bool ServerContext::AddAttachment(const std::string& resourceId, |
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810 FileContentType attachmentType, |
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811 const void* data, |
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812 size_t size) |
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813 { |
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814 LOG(INFO) << "Adding attachment " << EnumerationToString(attachmentType) << " to resource " << resourceId; |
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815 |
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816 // TODO Should we use "gzip" instead? |
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817 CompressionType compression = (compressionEnabled_ ? CompressionType_ZlibWithSize : CompressionType_None); |
699
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818 |
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819 StorageAccessor accessor(area_, GetMetricsRegistry()); |
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820 FileInfo attachment = accessor.Write(data, size, attachmentType, compression, storeMD5_); |
699
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821 |
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822 StoreStatus status = index_.AddAttachment(attachment, resourceId); |
699
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823 if (status != StoreStatus_Success) |
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824 { |
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825 accessor.Remove(attachment); |
699
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|
826 return false; |
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827 } |
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828 else |
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829 { |
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830 return true; |
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831 } |
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832 } |
1145
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833 |
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834 |
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835 bool ServerContext::DeleteResource(Json::Value& target, |
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836 const std::string& uuid, |
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837 ResourceType expectedType) |
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838 { |
2507 | 839 if (expectedType == ResourceType_Instance) |
840 { | |
841 // remove the file from the DicomCache | |
842 boost::mutex::scoped_lock lock(dicomCacheMutex_); | |
843 dicomCache_.Invalidate(uuid); | |
844 } | |
845 | |
1145
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846 return index_.DeleteResource(target, uuid, expectedType); |
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847 } |
1189
6b9b02a16e99
NewChildInstance change type
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1165
diff
changeset
|
848 |
6b9b02a16e99
NewChildInstance change type
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1165
diff
changeset
|
849 |
1198 | 850 void ServerContext::SignalChange(const ServerIndexChange& change) |
1189
6b9b02a16e99
NewChildInstance change type
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1165
diff
changeset
|
851 { |
1436
0a3e3be59094
uncoupling of SignalChange for Lua scripts
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1434
diff
changeset
|
852 pendingChanges_.Enqueue(change.Clone()); |
1189
6b9b02a16e99
NewChildInstance change type
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1165
diff
changeset
|
853 } |
1232
f1c01451a8ee
Introspection of plugins, Plugins can extend Orthanc Explorer with custom JavaScript
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1198
diff
changeset
|
854 |
f1c01451a8ee
Introspection of plugins, Plugins can extend Orthanc Explorer with custom JavaScript
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1198
diff
changeset
|
855 |
2136
dd609a99d39a
uniformization of the macro naming
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2135
diff
changeset
|
856 #if ORTHANC_ENABLE_PLUGINS == 1 |
1434
f9cd40166269
refactoring of OrthancPlugins, improvement in ServeFolders
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1433
diff
changeset
|
857 void ServerContext::SetPlugins(OrthancPlugins& plugins) |
1232
f1c01451a8ee
Introspection of plugins, Plugins can extend Orthanc Explorer with custom JavaScript
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1198
diff
changeset
|
858 { |
3947
cf6eb4fc6841
fix issue 179: use a shared mutex to avoid deadlock in python plugins
Alain Mazy <alain@mazy.be>
parents:
3945
diff
changeset
|
859 boost::unique_lock<boost::shared_mutex> lock(listenersMutex_); |
1459 | 860 |
1434
f9cd40166269
refactoring of OrthancPlugins, improvement in ServeFolders
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1433
diff
changeset
|
861 plugins_ = &plugins; |
f9cd40166269
refactoring of OrthancPlugins, improvement in ServeFolders
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1433
diff
changeset
|
862 |
f9cd40166269
refactoring of OrthancPlugins, improvement in ServeFolders
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1433
diff
changeset
|
863 // TODO REFACTOR THIS |
f9cd40166269
refactoring of OrthancPlugins, improvement in ServeFolders
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1433
diff
changeset
|
864 listeners_.clear(); |
2738
3a55b77339ff
fix deadlock in Lua scripts
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2716
diff
changeset
|
865 listeners_.push_back(ServerListener(luaListener_, "Lua")); |
1434
f9cd40166269
refactoring of OrthancPlugins, improvement in ServeFolders
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1433
diff
changeset
|
866 listeners_.push_back(ServerListener(plugins, "plugin")); |
1232
f1c01451a8ee
Introspection of plugins, Plugins can extend Orthanc Explorer with custom JavaScript
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1198
diff
changeset
|
867 } |
f1c01451a8ee
Introspection of plugins, Plugins can extend Orthanc Explorer with custom JavaScript
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1198
diff
changeset
|
868 |
f1c01451a8ee
Introspection of plugins, Plugins can extend Orthanc Explorer with custom JavaScript
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1198
diff
changeset
|
869 |
1434
f9cd40166269
refactoring of OrthancPlugins, improvement in ServeFolders
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1433
diff
changeset
|
870 void ServerContext::ResetPlugins() |
1232
f1c01451a8ee
Introspection of plugins, Plugins can extend Orthanc Explorer with custom JavaScript
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1198
diff
changeset
|
871 { |
3947
cf6eb4fc6841
fix issue 179: use a shared mutex to avoid deadlock in python plugins
Alain Mazy <alain@mazy.be>
parents:
3945
diff
changeset
|
872 boost::unique_lock<boost::shared_mutex> lock(listenersMutex_); |
1459 | 873 |
1434
f9cd40166269
refactoring of OrthancPlugins, improvement in ServeFolders
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1433
diff
changeset
|
874 plugins_ = NULL; |
f9cd40166269
refactoring of OrthancPlugins, improvement in ServeFolders
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1433
diff
changeset
|
875 |
f9cd40166269
refactoring of OrthancPlugins, improvement in ServeFolders
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1433
diff
changeset
|
876 // TODO REFACTOR THIS |
f9cd40166269
refactoring of OrthancPlugins, improvement in ServeFolders
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1433
diff
changeset
|
877 listeners_.clear(); |
2738
3a55b77339ff
fix deadlock in Lua scripts
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2716
diff
changeset
|
878 listeners_.push_back(ServerListener(luaListener_, "Lua")); |
1232
f1c01451a8ee
Introspection of plugins, Plugins can extend Orthanc Explorer with custom JavaScript
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1198
diff
changeset
|
879 } |
f1c01451a8ee
Introspection of plugins, Plugins can extend Orthanc Explorer with custom JavaScript
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1198
diff
changeset
|
880 |
f1c01451a8ee
Introspection of plugins, Plugins can extend Orthanc Explorer with custom JavaScript
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1198
diff
changeset
|
881 |
1434
f9cd40166269
refactoring of OrthancPlugins, improvement in ServeFolders
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1433
diff
changeset
|
882 const OrthancPlugins& ServerContext::GetPlugins() const |
1232
f1c01451a8ee
Introspection of plugins, Plugins can extend Orthanc Explorer with custom JavaScript
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1198
diff
changeset
|
883 { |
f1c01451a8ee
Introspection of plugins, Plugins can extend Orthanc Explorer with custom JavaScript
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1198
diff
changeset
|
884 if (HasPlugins()) |
f1c01451a8ee
Introspection of plugins, Plugins can extend Orthanc Explorer with custom JavaScript
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1198
diff
changeset
|
885 { |
f1c01451a8ee
Introspection of plugins, Plugins can extend Orthanc Explorer with custom JavaScript
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1198
diff
changeset
|
886 return *plugins_; |
f1c01451a8ee
Introspection of plugins, Plugins can extend Orthanc Explorer with custom JavaScript
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1198
diff
changeset
|
887 } |
f1c01451a8ee
Introspection of plugins, Plugins can extend Orthanc Explorer with custom JavaScript
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1198
diff
changeset
|
888 else |
f1c01451a8ee
Introspection of plugins, Plugins can extend Orthanc Explorer with custom JavaScript
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1198
diff
changeset
|
889 { |
f1c01451a8ee
Introspection of plugins, Plugins can extend Orthanc Explorer with custom JavaScript
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1198
diff
changeset
|
890 throw OrthancException(ErrorCode_InternalError); |
f1c01451a8ee
Introspection of plugins, Plugins can extend Orthanc Explorer with custom JavaScript
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1198
diff
changeset
|
891 } |
f1c01451a8ee
Introspection of plugins, Plugins can extend Orthanc Explorer with custom JavaScript
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1198
diff
changeset
|
892 } |
1632
eb8fbcf008b5
fix build with plugins disabled
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1582
diff
changeset
|
893 |
1741
06addfcd1d4c
OrthancStarted and OrthancStopped events in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1701
diff
changeset
|
894 OrthancPlugins& ServerContext::GetPlugins() |
06addfcd1d4c
OrthancStarted and OrthancStopped events in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1701
diff
changeset
|
895 { |
06addfcd1d4c
OrthancStarted and OrthancStopped events in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1701
diff
changeset
|
896 if (HasPlugins()) |
06addfcd1d4c
OrthancStarted and OrthancStopped events in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1701
diff
changeset
|
897 { |
06addfcd1d4c
OrthancStarted and OrthancStopped events in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1701
diff
changeset
|
898 return *plugins_; |
06addfcd1d4c
OrthancStarted and OrthancStopped events in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1701
diff
changeset
|
899 } |
06addfcd1d4c
OrthancStarted and OrthancStopped events in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1701
diff
changeset
|
900 else |
06addfcd1d4c
OrthancStarted and OrthancStopped events in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1701
diff
changeset
|
901 { |
06addfcd1d4c
OrthancStarted and OrthancStopped events in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1701
diff
changeset
|
902 throw OrthancException(ErrorCode_InternalError); |
06addfcd1d4c
OrthancStarted and OrthancStopped events in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1701
diff
changeset
|
903 } |
06addfcd1d4c
OrthancStarted and OrthancStopped events in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1701
diff
changeset
|
904 } |
06addfcd1d4c
OrthancStarted and OrthancStopped events in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1701
diff
changeset
|
905 |
1632
eb8fbcf008b5
fix build with plugins disabled
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1582
diff
changeset
|
906 #endif |
eb8fbcf008b5
fix build with plugins disabled
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1582
diff
changeset
|
907 |
eb8fbcf008b5
fix build with plugins disabled
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1582
diff
changeset
|
908 |
eb8fbcf008b5
fix build with plugins disabled
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1582
diff
changeset
|
909 bool ServerContext::HasPlugins() const |
eb8fbcf008b5
fix build with plugins disabled
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1582
diff
changeset
|
910 { |
2136
dd609a99d39a
uniformization of the macro naming
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2135
diff
changeset
|
911 #if ORTHANC_ENABLE_PLUGINS == 1 |
1632
eb8fbcf008b5
fix build with plugins disabled
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1582
diff
changeset
|
912 return (plugins_ != NULL); |
eb8fbcf008b5
fix build with plugins disabled
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1582
diff
changeset
|
913 #else |
eb8fbcf008b5
fix build with plugins disabled
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1582
diff
changeset
|
914 return false; |
eb8fbcf008b5
fix build with plugins disabled
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1582
diff
changeset
|
915 #endif |
eb8fbcf008b5
fix build with plugins disabled
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1582
diff
changeset
|
916 } |
1757
98abb8d7f905
ServerContext::Apply lookup
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1741
diff
changeset
|
917 |
98abb8d7f905
ServerContext::Apply lookup
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1741
diff
changeset
|
918 |
3021
2cbafb5d5a62
renamed LookupResource::IVisitor as ServerContext::ILookupVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3015
diff
changeset
|
919 void ServerContext::Apply(ILookupVisitor& visitor, |
3033
5da6d1063d8f
effectively replacing LookupResource by DatabaseLookup in searches
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3031
diff
changeset
|
920 const DatabaseLookup& lookup, |
5da6d1063d8f
effectively replacing LookupResource by DatabaseLookup in searches
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3031
diff
changeset
|
921 ResourceType queryLevel, |
2304
563bf878407a
Argument "Since" in URI "/tools/find" (related to issue 53)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2244
diff
changeset
|
922 size_t since, |
563bf878407a
Argument "Since" in URI "/tools/find" (related to issue 53)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2244
diff
changeset
|
923 size_t limit) |
1757
98abb8d7f905
ServerContext::Apply lookup
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1741
diff
changeset
|
924 { |
3679
6358923d3ced
C-FIND: forbid wildcard matching on some VRs, ignore main tags below the queried level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3677
diff
changeset
|
925 unsigned int databaseLimit = (queryLevel == ResourceType_Instance ? |
6358923d3ced
C-FIND: forbid wildcard matching on some VRs, ignore main tags below the queried level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3677
diff
changeset
|
926 limitFindInstances_ : limitFindResults_); |
3015
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
927 |
1757
98abb8d7f905
ServerContext::Apply lookup
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1741
diff
changeset
|
928 std::vector<std::string> resources, instances; |
3015
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
929 |
3204
8792867b739a
fix incorrect "too many results"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3175
diff
changeset
|
930 { |
8792867b739a
fix incorrect "too many results"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3175
diff
changeset
|
931 const size_t lookupLimit = (databaseLimit == 0 ? 0 : databaseLimit + 1); |
8792867b739a
fix incorrect "too many results"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3175
diff
changeset
|
932 GetIndex().ApplyLookupResources(resources, &instances, lookup, queryLevel, lookupLimit); |
8792867b739a
fix incorrect "too many results"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3175
diff
changeset
|
933 } |
3025
039a9d262d64
preparing to speed up find in databases
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3021
diff
changeset
|
934 |
3033
5da6d1063d8f
effectively replacing LookupResource by DatabaseLookup in searches
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3031
diff
changeset
|
935 bool complete = (databaseLimit == 0 || |
3204
8792867b739a
fix incorrect "too many results"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3175
diff
changeset
|
936 resources.size() <= databaseLimit); |
1757
98abb8d7f905
ServerContext::Apply lookup
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1741
diff
changeset
|
937 |
3005
8265a6b56100
DicomMap::FromDicomAsJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3003
diff
changeset
|
938 LOG(INFO) << "Number of candidate resources after fast DB filtering on main DICOM tags: " << resources.size(); |
3003
5ae3ff2398e9
refactoring OrthancFindRequestHandler using LookupResource::IVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3001
diff
changeset
|
939 |
3679
6358923d3ced
C-FIND: forbid wildcard matching on some VRs, ignore main tags below the queried level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3677
diff
changeset
|
940 /** |
6358923d3ced
C-FIND: forbid wildcard matching on some VRs, ignore main tags below the queried level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3677
diff
changeset
|
941 * "resources" contains the Orthanc ID of the resource at level |
6358923d3ced
C-FIND: forbid wildcard matching on some VRs, ignore main tags below the queried level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3677
diff
changeset
|
942 * "queryLevel", "instances" contains one the Orthanc ID of one |
6358923d3ced
C-FIND: forbid wildcard matching on some VRs, ignore main tags below the queried level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3677
diff
changeset
|
943 * sample instance from this resource. |
6358923d3ced
C-FIND: forbid wildcard matching on some VRs, ignore main tags below the queried level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3677
diff
changeset
|
944 **/ |
1757
98abb8d7f905
ServerContext::Apply lookup
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1741
diff
changeset
|
945 assert(resources.size() == instances.size()); |
98abb8d7f905
ServerContext::Apply lookup
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1741
diff
changeset
|
946 |
3001
7695a9c81099
refactoring /tools/find using LookupResource::IVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2965
diff
changeset
|
947 size_t countResults = 0; |
2304
563bf878407a
Argument "Since" in URI "/tools/find" (related to issue 53)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2244
diff
changeset
|
948 size_t skipped = 0; |
3015
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
949 |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
950 const bool isDicomAsJsonNeeded = visitor.IsDicomAsJsonNeeded(); |
3012
af1530b45290
Optimization: On finds, do not read JSON (disk) if main DICOM tags (DB) are sufficient
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3005
diff
changeset
|
951 |
1757
98abb8d7f905
ServerContext::Apply lookup
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1741
diff
changeset
|
952 for (size_t i = 0; i < instances.size(); i++) |
98abb8d7f905
ServerContext::Apply lookup
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1741
diff
changeset
|
953 { |
3012
af1530b45290
Optimization: On finds, do not read JSON (disk) if main DICOM tags (DB) are sufficient
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3005
diff
changeset
|
954 // Optimization in Orthanc 1.5.1 - Don't read the full JSON from |
af1530b45290
Optimization: On finds, do not read JSON (disk) if main DICOM tags (DB) are sufficient
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3005
diff
changeset
|
955 // the disk if only "main DICOM tags" are to be returned |
af1530b45290
Optimization: On finds, do not read JSON (disk) if main DICOM tags (DB) are sufficient
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3005
diff
changeset
|
956 |
3712
2a170a8f1faf
replacing std::auto_ptr by std::unique_ptr
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3679
diff
changeset
|
957 std::unique_ptr<Json::Value> dicomAsJson; |
3012
af1530b45290
Optimization: On finds, do not read JSON (disk) if main DICOM tags (DB) are sufficient
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958 |
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959 bool hasOnlyMainDicomTags; |
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960 DicomMap dicom; |
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961 |
3677
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962 if (findStorageAccessMode_ == FindStorageAccessMode_DatabaseOnly || |
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diff
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|
963 findStorageAccessMode_ == FindStorageAccessMode_DiskOnAnswer || |
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964 lookup.HasOnlyMainDicomTags()) |
3012
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965 { |
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966 // Case (1): The main DICOM tags, as stored in the database, |
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967 // are sufficient to look for match |
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968 |
3679
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969 DicomMap tmp; |
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970 if (!GetIndex().GetAllMainDicomTags(tmp, instances[i])) |
3015
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971 { |
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|
972 // The instance has been removed during the execution of the |
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973 // lookup, ignore it |
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974 continue; |
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975 } |
3679
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976 |
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|
977 #if 1 |
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978 // New in Orthanc 1.6.0: Only keep the main DICOM tags at the |
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979 // level of interest for the query |
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980 switch (queryLevel) |
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981 { |
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982 // WARNING: Don't reorder cases below, and don't add "break" |
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983 case ResourceType_Instance: |
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984 dicom.MergeMainDicomTags(tmp, ResourceType_Instance); |
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985 |
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986 case ResourceType_Series: |
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987 dicom.MergeMainDicomTags(tmp, ResourceType_Series); |
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988 |
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989 case ResourceType_Study: |
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|
990 dicom.MergeMainDicomTags(tmp, ResourceType_Study); |
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991 |
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992 case ResourceType_Patient: |
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993 dicom.MergeMainDicomTags(tmp, ResourceType_Patient); |
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994 break; |
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995 |
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996 default: |
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997 throw OrthancException(ErrorCode_InternalError); |
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998 } |
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999 |
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1000 // Special case of the "Modality" at the study level, in order |
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|
1001 // to deal with C-FIND on "ModalitiesInStudy" (0008,0061). |
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1002 // Check out integration test "test_rest_modalities_in_study". |
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1003 if (queryLevel == ResourceType_Study) |
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1004 { |
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1005 dicom.CopyTagIfExists(tmp, DICOM_TAG_MODALITY); |
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1006 } |
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1007 #else |
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1008 dicom.Assign(tmp); // This emulates Orthanc <= 1.5.8 |
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1009 #endif |
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1010 |
3012
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1011 hasOnlyMainDicomTags = true; |
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1012 } |
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1013 else |
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1014 { |
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1015 // Case (2): Need to read the "DICOM-as-JSON" attachment from |
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1016 // the storage area |
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1017 dicomAsJson.reset(new Json::Value); |
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1018 ReadDicomAsJson(*dicomAsJson, instances[i]); |
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1019 |
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1020 dicom.FromDicomAsJson(*dicomAsJson); |
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1021 |
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1022 // This map contains the entire JSON, i.e. more than the main DICOM tags |
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1023 hasOnlyMainDicomTags = false; |
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1024 } |
1757
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|
1025 |
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1026 if (lookup.IsMatch(dicom)) |
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|
1027 { |
2304
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Argument "Since" in URI "/tools/find" (related to issue 53)
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1028 if (skipped < since) |
1757
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|
1029 { |
2304
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Argument "Since" in URI "/tools/find" (related to issue 53)
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1030 skipped++; |
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1031 } |
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Argument "Since" in URI "/tools/find" (related to issue 53)
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diff
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1032 else if (limit != 0 && |
3001
7695a9c81099
refactoring /tools/find using LookupResource::IVisitor
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2965
diff
changeset
|
1033 countResults >= limit) |
2304
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Argument "Since" in URI "/tools/find" (related to issue 53)
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|
1034 { |
3003
5ae3ff2398e9
refactoring OrthancFindRequestHandler using LookupResource::IVisitor
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diff
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|
1035 // Too many results, don't mark as complete |
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refactoring OrthancFindRequestHandler using LookupResource::IVisitor
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|
1036 complete = false; |
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refactoring OrthancFindRequestHandler using LookupResource::IVisitor
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diff
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|
1037 break; |
1757
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|
1038 } |
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|
1039 else |
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diff
changeset
|
1040 { |
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1041 if ((findStorageAccessMode_ == FindStorageAccessMode_DiskOnLookupAndAnswer || |
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|
1042 findStorageAccessMode_ == FindStorageAccessMode_DiskOnAnswer) && |
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1043 dicomAsJson.get() == NULL && |
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1044 isDicomAsJsonNeeded) |
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1045 { |
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|
1046 dicomAsJson.reset(new Json::Value); |
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|
1047 ReadDicomAsJson(*dicomAsJson, instances[i]); |
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1048 } |
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1049 |
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1050 if (hasOnlyMainDicomTags) |
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1051 { |
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|
1052 // This is Case (1): The variable "dicom" only contains the main DICOM tags |
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1053 visitor.Visit(resources[i], instances[i], dicom, dicomAsJson.get()); |
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1054 } |
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1055 else |
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|
1056 { |
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1057 // Remove the non-main DICOM tags from "dicom" if Case (2) |
af1530b45290
Optimization: On finds, do not read JSON (disk) if main DICOM tags (DB) are sufficient
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3005
diff
changeset
|
1058 // was used, for consistency with Case (1) |
af1530b45290
Optimization: On finds, do not read JSON (disk) if main DICOM tags (DB) are sufficient
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3005
diff
changeset
|
1059 |
af1530b45290
Optimization: On finds, do not read JSON (disk) if main DICOM tags (DB) are sufficient
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3005
diff
changeset
|
1060 DicomMap mainDicomTags; |
af1530b45290
Optimization: On finds, do not read JSON (disk) if main DICOM tags (DB) are sufficient
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1061 mainDicomTags.ExtractMainDicomTags(dicom); |
af1530b45290
Optimization: On finds, do not read JSON (disk) if main DICOM tags (DB) are sufficient
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1062 visitor.Visit(resources[i], instances[i], mainDicomTags, dicomAsJson.get()); |
af1530b45290
Optimization: On finds, do not read JSON (disk) if main DICOM tags (DB) are sufficient
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1063 } |
af1530b45290
Optimization: On finds, do not read JSON (disk) if main DICOM tags (DB) are sufficient
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1064 |
3001
7695a9c81099
refactoring /tools/find using LookupResource::IVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2965
diff
changeset
|
1065 countResults ++; |
1757
98abb8d7f905
ServerContext::Apply lookup
Sebastien Jodogne <s.jodogne@gmail.com>
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1741
diff
changeset
|
1066 } |
98abb8d7f905
ServerContext::Apply lookup
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1067 } |
98abb8d7f905
ServerContext::Apply lookup
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1068 } |
3001
7695a9c81099
refactoring /tools/find using LookupResource::IVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2965
diff
changeset
|
1069 |
3003
5ae3ff2398e9
refactoring OrthancFindRequestHandler using LookupResource::IVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3001
diff
changeset
|
1070 if (complete) |
5ae3ff2398e9
refactoring OrthancFindRequestHandler using LookupResource::IVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3001
diff
changeset
|
1071 { |
5ae3ff2398e9
refactoring OrthancFindRequestHandler using LookupResource::IVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3001
diff
changeset
|
1072 visitor.MarkAsComplete(); |
5ae3ff2398e9
refactoring OrthancFindRequestHandler using LookupResource::IVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1073 } |
5ae3ff2398e9
refactoring OrthancFindRequestHandler using LookupResource::IVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1074 |
5ae3ff2398e9
refactoring OrthancFindRequestHandler using LookupResource::IVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1075 LOG(INFO) << "Number of matching resources: " << countResults; |
1757
98abb8d7f905
ServerContext::Apply lookup
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1741
diff
changeset
|
1076 } |
98abb8d7f905
ServerContext::Apply lookup
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1741
diff
changeset
|
1077 |
2626 | 1078 |
3015
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
1079 bool ServerContext::LookupOrReconstructMetadata(std::string& target, |
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diff
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|
1080 const std::string& publicId, |
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|
1081 MetadataType metadata) |
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parents:
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diff
changeset
|
1082 { |
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On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
1083 // This is a backwards-compatibility function, that can |
abe49ca61cd5
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diff
changeset
|
1084 // reconstruct metadata that were not generated by an older |
abe49ca61cd5
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Sebastien Jodogne <s.jodogne@gmail.com>
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changeset
|
1085 // release of Orthanc |
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diff
changeset
|
1086 |
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diff
changeset
|
1087 if (metadata == MetadataType_Instance_SopClassUid || |
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1088 metadata == MetadataType_Instance_TransferSyntax) |
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
1089 { |
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On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
1090 if (index_.LookupMetadata(target, publicId, metadata)) |
abe49ca61cd5
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parents:
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diff
changeset
|
1091 { |
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On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1092 return true; |
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parents:
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diff
changeset
|
1093 } |
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diff
changeset
|
1094 else |
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On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1095 { |
abe49ca61cd5
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parents:
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diff
changeset
|
1096 // These metadata are mandatory in DICOM instances, and were |
abe49ca61cd5
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3012
diff
changeset
|
1097 // introduced in Orthanc 1.2.0. The fact that |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
1098 // "LookupMetadata()" has failed indicates that this database |
abe49ca61cd5
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parents:
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diff
changeset
|
1099 // comes from an older release of Orthanc. |
abe49ca61cd5
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parents:
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diff
changeset
|
1100 |
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parents:
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diff
changeset
|
1101 DicomTag tag(0, 0); |
abe49ca61cd5
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diff
changeset
|
1102 |
abe49ca61cd5
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parents:
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diff
changeset
|
1103 switch (metadata) |
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parents:
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diff
changeset
|
1104 { |
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parents:
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diff
changeset
|
1105 case MetadataType_Instance_SopClassUid: |
abe49ca61cd5
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diff
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|
1106 tag = DICOM_TAG_SOP_CLASS_UID; |
abe49ca61cd5
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1107 break; |
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1108 |
abe49ca61cd5
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parents:
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diff
changeset
|
1109 case MetadataType_Instance_TransferSyntax: |
abe49ca61cd5
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parents:
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diff
changeset
|
1110 tag = DICOM_TAG_TRANSFER_SYNTAX_UID; |
abe49ca61cd5
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1111 break; |
abe49ca61cd5
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1112 |
abe49ca61cd5
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parents:
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diff
changeset
|
1113 default: |
abe49ca61cd5
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parents:
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diff
changeset
|
1114 throw OrthancException(ErrorCode_InternalError); |
abe49ca61cd5
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parents:
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diff
changeset
|
1115 } |
abe49ca61cd5
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1116 |
abe49ca61cd5
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parents:
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diff
changeset
|
1117 Json::Value dicomAsJson; |
abe49ca61cd5
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parents:
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diff
changeset
|
1118 ReadDicomAsJson(dicomAsJson, publicId); |
abe49ca61cd5
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parents:
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diff
changeset
|
1119 |
abe49ca61cd5
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parents:
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diff
changeset
|
1120 DicomMap tags; |
abe49ca61cd5
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1121 tags.FromDicomAsJson(dicomAsJson); |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1122 |
abe49ca61cd5
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parents:
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diff
changeset
|
1123 const DicomValue* value = tags.TestAndGetValue(tag); |
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parents:
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diff
changeset
|
1124 |
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1125 if (value != NULL && |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1126 !value->IsNull() && |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1127 !value->IsBinary()) |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1128 { |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
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parents:
3012
diff
changeset
|
1129 target = value->GetContent(); |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1130 |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1131 // Store for reuse |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
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parents:
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diff
changeset
|
1132 index_.SetMetadata(publicId, metadata, target); |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1133 return true; |
abe49ca61cd5
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1134 } |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
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changeset
|
1135 else |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1136 { |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
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parents:
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diff
changeset
|
1137 // Should never happen |
abe49ca61cd5
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
1138 return false; |
abe49ca61cd5
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1139 } |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
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diff
changeset
|
1140 } |
abe49ca61cd5
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parents:
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diff
changeset
|
1141 } |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
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parents:
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changeset
|
1142 else |
abe49ca61cd5
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diff
changeset
|
1143 { |
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|
1144 // No backward |
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changeset
|
1145 return index_.LookupMetadata(target, publicId, metadata); |
abe49ca61cd5
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diff
changeset
|
1146 } |
abe49ca61cd5
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parents:
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diff
changeset
|
1147 } |
abe49ca61cd5
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diff
changeset
|
1148 |
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|
1149 |
2626 | 1150 void ServerContext::AddChildInstances(SetOfInstancesJob& job, |
1151 const std::string& publicId) | |
1152 { | |
1153 std::list<std::string> instances; | |
1154 GetIndex().GetChildInstances(instances, publicId); | |
1155 | |
1156 job.Reserve(job.GetInstancesCount() + instances.size()); | |
1157 | |
1158 for (std::list<std::string>::const_iterator | |
1159 it = instances.begin(); it != instances.end(); ++it) | |
1160 { | |
1161 job.AddInstance(*it); | |
1162 } | |
1163 } | |
2940
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refactoring access to Orthanc configuration
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1164 |
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|
1165 |
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|
1166 void ServerContext::SignalUpdatedModalities() |
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changeset
|
1167 { |
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|
1168 #if ORTHANC_ENABLE_PLUGINS == 1 |
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|
1169 if (HasPlugins()) |
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|
1170 { |
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changeset
|
1171 GetPlugins().SignalUpdatedModalities(); |
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|
1172 } |
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changeset
|
1173 #endif |
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|
1174 } |
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diff
changeset
|
1175 |
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diff
changeset
|
1176 |
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changeset
|
1177 void ServerContext::SignalUpdatedPeers() |
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|
1178 { |
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changeset
|
1179 #if ORTHANC_ENABLE_PLUGINS == 1 |
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2925
diff
changeset
|
1180 if (HasPlugins()) |
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diff
changeset
|
1181 { |
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diff
changeset
|
1182 GetPlugins().SignalUpdatedPeers(); |
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diff
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|
1183 } |
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diff
changeset
|
1184 #endif |
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diff
changeset
|
1185 } |
3660
f159b731c47d
IStorageCommitmentFactory
Sebastien Jodogne <s.jodogne@gmail.com>
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3640
diff
changeset
|
1186 |
f159b731c47d
IStorageCommitmentFactory
Sebastien Jodogne <s.jodogne@gmail.com>
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3640
diff
changeset
|
1187 |
f159b731c47d
IStorageCommitmentFactory
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3640
diff
changeset
|
1188 IStorageCommitmentFactory::ILookupHandler* |
f159b731c47d
IStorageCommitmentFactory
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3640
diff
changeset
|
1189 ServerContext::CreateStorageCommitment(const std::string& jobId, |
f159b731c47d
IStorageCommitmentFactory
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diff
changeset
|
1190 const std::string& transactionUid, |
f159b731c47d
IStorageCommitmentFactory
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3640
diff
changeset
|
1191 const std::vector<std::string>& sopClassUids, |
3662
d8371b4302ff
OrthancPluginRegisterStorageCommitmentScpCallback()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3660
diff
changeset
|
1192 const std::vector<std::string>& sopInstanceUids, |
d8371b4302ff
OrthancPluginRegisterStorageCommitmentScpCallback()
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
1193 const std::string& remoteAet, |
d8371b4302ff
OrthancPluginRegisterStorageCommitmentScpCallback()
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
1194 const std::string& calledAet) |
3660
f159b731c47d
IStorageCommitmentFactory
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|
1195 { |
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IStorageCommitmentFactory
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diff
changeset
|
1196 #if ORTHANC_ENABLE_PLUGINS == 1 |
f159b731c47d
IStorageCommitmentFactory
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
1197 if (HasPlugins()) |
f159b731c47d
IStorageCommitmentFactory
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1198 { |
3662
d8371b4302ff
OrthancPluginRegisterStorageCommitmentScpCallback()
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
1199 return GetPlugins().CreateStorageCommitment( |
d8371b4302ff
OrthancPluginRegisterStorageCommitmentScpCallback()
Sebastien Jodogne <s.jodogne@gmail.com>
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3660
diff
changeset
|
1200 jobId, transactionUid, sopClassUids, sopInstanceUids, remoteAet, calledAet); |
3660
f159b731c47d
IStorageCommitmentFactory
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
1201 } |
f159b731c47d
IStorageCommitmentFactory
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
1202 #endif |
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IStorageCommitmentFactory
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
1203 |
f159b731c47d
IStorageCommitmentFactory
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
1204 return NULL; |
f159b731c47d
IStorageCommitmentFactory
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
1205 } |
3894
8f7ad4989fec
transcoding to uncompressed transfer syntaxes over DICOM protocol is implemented
Sebastien Jodogne <s.jodogne@gmail.com>
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3839
diff
changeset
|
1206 |
8f7ad4989fec
transcoding to uncompressed transfer syntaxes over DICOM protocol is implemented
Sebastien Jodogne <s.jodogne@gmail.com>
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3839
diff
changeset
|
1207 |
3928
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ServerContext::DecodeDicomFrame()
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diff
changeset
|
1208 ImageAccessor* ServerContext::DecodeDicomFrame(const std::string& publicId, |
4cdc875510d1
ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
1209 unsigned int frameIndex) |
4cdc875510d1
ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
1210 { |
3931
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diff
changeset
|
1211 if (builtinDecoderTranscoderOrder_ == BuiltinDecoderTranscoderOrder_Before) |
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new configuration option: BuiltinDecoderTranscoderOrder
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changeset
|
1212 { |
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new configuration option: BuiltinDecoderTranscoderOrder
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changeset
|
1213 // Use Orthanc's built-in decoder, using the cache to speed-up |
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new configuration option: BuiltinDecoderTranscoderOrder
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
1214 // things on multi-frame images |
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new configuration option: BuiltinDecoderTranscoderOrder
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diff
changeset
|
1215 ServerContext::DicomCacheLocker locker(*this, publicId); |
e6606d3ec892
new configuration option: BuiltinDecoderTranscoderOrder
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
1216 std::unique_ptr<ImageAccessor> decoded( |
e6606d3ec892
new configuration option: BuiltinDecoderTranscoderOrder
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
1217 DicomImageDecoder::Decode(locker.GetDicom(), frameIndex)); |
e6606d3ec892
new configuration option: BuiltinDecoderTranscoderOrder
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
1218 if (decoded.get() != NULL) |
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new configuration option: BuiltinDecoderTranscoderOrder
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|
1219 { |
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new configuration option: BuiltinDecoderTranscoderOrder
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
1220 return decoded.release(); |
e6606d3ec892
new configuration option: BuiltinDecoderTranscoderOrder
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diff
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|
1221 } |
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new configuration option: BuiltinDecoderTranscoderOrder
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diff
changeset
|
1222 } |
3928
4cdc875510d1
ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
1223 |
4cdc875510d1
ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
1224 #if ORTHANC_ENABLE_PLUGINS == 1 |
4cdc875510d1
ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1225 if (HasPlugins() && |
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ServerContext::DecodeDicomFrame()
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parents:
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diff
changeset
|
1226 GetPlugins().HasCustomImageDecoder()) |
4cdc875510d1
ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1227 { |
4cdc875510d1
ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
1228 // TODO: Store the raw buffer in the DicomCacheLocker |
4cdc875510d1
ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
1229 std::string dicomContent; |
4cdc875510d1
ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1230 ReadDicom(dicomContent, publicId); |
4cdc875510d1
ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
1231 std::unique_ptr<ImageAccessor> decoded( |
4cdc875510d1
ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
1232 GetPlugins().Decode(dicomContent.c_str(), dicomContent.size(), frameIndex)); |
4cdc875510d1
ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
1233 if (decoded.get() != NULL) |
4cdc875510d1
ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
1234 { |
4cdc875510d1
ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1235 return decoded.release(); |
4cdc875510d1
ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
1236 } |
3931
e6606d3ec892
new configuration option: BuiltinDecoderTranscoderOrder
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
1237 else if (builtinDecoderTranscoderOrder_ == BuiltinDecoderTranscoderOrder_After) |
3928
4cdc875510d1
ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
1238 { |
4cdc875510d1
ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
1239 LOG(INFO) << "The installed image decoding plugins cannot handle an image, " |
3930
b99acc213937
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
1240 << "fallback to the built-in DCMTK decoder"; |
3928
4cdc875510d1
ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
1241 } |
4cdc875510d1
ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1242 } |
4cdc875510d1
ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1243 #endif |
4cdc875510d1
ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1244 |
3931
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new configuration option: BuiltinDecoderTranscoderOrder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3930
diff
changeset
|
1245 if (builtinDecoderTranscoderOrder_ == BuiltinDecoderTranscoderOrder_After) |
3928
4cdc875510d1
ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1246 { |
4cdc875510d1
ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1247 ServerContext::DicomCacheLocker locker(*this, publicId); |
4cdc875510d1
ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1248 return DicomImageDecoder::Decode(locker.GetDicom(), frameIndex); |
4cdc875510d1
ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1249 } |
3931
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new configuration option: BuiltinDecoderTranscoderOrder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1250 else |
e6606d3ec892
new configuration option: BuiltinDecoderTranscoderOrder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1251 { |
e6606d3ec892
new configuration option: BuiltinDecoderTranscoderOrder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1252 return NULL; // Built-in decoder is disabled |
e6606d3ec892
new configuration option: BuiltinDecoderTranscoderOrder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1253 } |
3928
4cdc875510d1
ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
1254 } |
4cdc875510d1
ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1255 |
4cdc875510d1
ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1256 |
4cdc875510d1
ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1257 ImageAccessor* ServerContext::DecodeDicomFrame(const DicomInstanceToStore& dicom, |
4cdc875510d1
ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1258 unsigned int frameIndex) |
4cdc875510d1
ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1259 { |
3931
e6606d3ec892
new configuration option: BuiltinDecoderTranscoderOrder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3930
diff
changeset
|
1260 if (builtinDecoderTranscoderOrder_ == BuiltinDecoderTranscoderOrder_Before) |
e6606d3ec892
new configuration option: BuiltinDecoderTranscoderOrder
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
1261 { |
e6606d3ec892
new configuration option: BuiltinDecoderTranscoderOrder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1262 std::unique_ptr<ImageAccessor> decoded( |
e6606d3ec892
new configuration option: BuiltinDecoderTranscoderOrder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1263 DicomImageDecoder::Decode(dicom.GetParsedDicomFile(), frameIndex)); |
e6606d3ec892
new configuration option: BuiltinDecoderTranscoderOrder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1264 if (decoded.get() != NULL) |
e6606d3ec892
new configuration option: BuiltinDecoderTranscoderOrder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1265 { |
e6606d3ec892
new configuration option: BuiltinDecoderTranscoderOrder
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diff
changeset
|
1266 return decoded.release(); |
e6606d3ec892
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diff
changeset
|
1267 } |
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new configuration option: BuiltinDecoderTranscoderOrder
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diff
changeset
|
1268 } |
3928
4cdc875510d1
ServerContext::DecodeDicomFrame()
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diff
changeset
|
1269 |
4cdc875510d1
ServerContext::DecodeDicomFrame()
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parents:
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diff
changeset
|
1270 #if ORTHANC_ENABLE_PLUGINS == 1 |
4cdc875510d1
ServerContext::DecodeDicomFrame()
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parents:
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diff
changeset
|
1271 if (HasPlugins() && |
4cdc875510d1
ServerContext::DecodeDicomFrame()
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diff
changeset
|
1272 GetPlugins().HasCustomImageDecoder()) |
4cdc875510d1
ServerContext::DecodeDicomFrame()
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diff
changeset
|
1273 { |
4cdc875510d1
ServerContext::DecodeDicomFrame()
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diff
changeset
|
1274 std::unique_ptr<ImageAccessor> decoded( |
4cdc875510d1
ServerContext::DecodeDicomFrame()
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diff
changeset
|
1275 GetPlugins().Decode(dicom.GetBufferData(), dicom.GetBufferSize(), frameIndex)); |
4cdc875510d1
ServerContext::DecodeDicomFrame()
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diff
changeset
|
1276 if (decoded.get() != NULL) |
4cdc875510d1
ServerContext::DecodeDicomFrame()
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diff
changeset
|
1277 { |
4cdc875510d1
ServerContext::DecodeDicomFrame()
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diff
changeset
|
1278 return decoded.release(); |
4cdc875510d1
ServerContext::DecodeDicomFrame()
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parents:
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diff
changeset
|
1279 } |
3931
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parents:
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diff
changeset
|
1280 else if (builtinDecoderTranscoderOrder_ == BuiltinDecoderTranscoderOrder_After) |
3928
4cdc875510d1
ServerContext::DecodeDicomFrame()
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diff
changeset
|
1281 { |
4cdc875510d1
ServerContext::DecodeDicomFrame()
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parents:
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diff
changeset
|
1282 LOG(INFO) << "The installed image decoding plugins cannot handle an image, " |
3930
b99acc213937
transcoder plugins and GDCM transcoding are working
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parents:
3928
diff
changeset
|
1283 << "fallback to the built-in DCMTK decoder"; |
3928
4cdc875510d1
ServerContext::DecodeDicomFrame()
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diff
changeset
|
1284 } |
4cdc875510d1
ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1285 } |
4cdc875510d1
ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1286 #endif |
4cdc875510d1
ServerContext::DecodeDicomFrame()
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parents:
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diff
changeset
|
1287 |
3931
e6606d3ec892
new configuration option: BuiltinDecoderTranscoderOrder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3930
diff
changeset
|
1288 if (builtinDecoderTranscoderOrder_ == BuiltinDecoderTranscoderOrder_After) |
e6606d3ec892
new configuration option: BuiltinDecoderTranscoderOrder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3930
diff
changeset
|
1289 { |
e6606d3ec892
new configuration option: BuiltinDecoderTranscoderOrder
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1290 return DicomImageDecoder::Decode(dicom.GetParsedDicomFile(), frameIndex); |
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1291 } |
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1292 else |
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1293 { |
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1294 return NULL; |
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1295 } |
3928
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ServerContext::DecodeDicomFrame()
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1296 } |
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ServerContext::DecodeDicomFrame()
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1297 |
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ServerContext::DecodeDicomFrame()
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1298 |
3980
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Fix decoding of DICOM images for plugins
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|
1299 ImageAccessor* ServerContext::DecodeDicomFrame(const void* dicom, |
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1300 size_t size, |
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Fix decoding of DICOM images for plugins
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1301 unsigned int frameIndex) |
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Fix decoding of DICOM images for plugins
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1302 { |
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|
1303 DicomInstanceToStore instance; |
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1304 instance.SetBuffer(dicom, size); |
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Fix decoding of DICOM images for plugins
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|
1305 return DecodeDicomFrame(instance, frameIndex); |
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1306 } |
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1307 |
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1308 |
3894
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1309 void ServerContext::StoreWithTranscoding(std::string& sopClassUid, |
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1310 std::string& sopInstanceUid, |
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1311 DicomStoreUserConnection& connection, |
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1312 const std::string& dicom, |
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1313 bool hasMoveOriginator, |
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1314 const std::string& moveOriginatorAet, |
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1315 uint16_t moveOriginatorId) |
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1316 { |
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1317 const void* data = dicom.empty() ? NULL : dicom.c_str(); |
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1318 |
3911
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Sebastien Jodogne <s.jodogne@gmail.com>
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|
1319 if (!transcodeDicomProtocol_ || |
3894
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1320 !connection.GetParameters().GetRemoteModality().IsTranscodingAllowed()) |
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1321 { |
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|
1322 connection.Store(sopClassUid, sopInstanceUid, data, dicom.size(), |
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1323 hasMoveOriginator, moveOriginatorAet, moveOriginatorId); |
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1324 } |
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1325 else |
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1326 { |
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|
1327 connection.Transcode(sopClassUid, sopInstanceUid, *this, data, dicom.size(), |
3912
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1328 hasMoveOriginator, moveOriginatorAet, moveOriginatorId); |
3894
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1329 } |
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1330 } |
3930
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1331 |
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1332 |
3944
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1333 bool ServerContext::Transcode(DicomImage& target, |
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|
1334 DicomImage& source /* in, "GetParsed()" possibly modified */, |
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1335 const std::set<DicomTransferSyntax>& allowedSyntaxes, |
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|
1336 bool allowNewSopInstanceUid) |
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1337 { |
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1338 if (builtinDecoderTranscoderOrder_ == BuiltinDecoderTranscoderOrder_Before) |
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1339 { |
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1340 if (dcmtkTranscoder_->Transcode(target, source, allowedSyntaxes, allowNewSopInstanceUid)) |
3944
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1341 { |
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1342 return true; |
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1343 } |
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1344 } |
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1345 |
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1346 #if ORTHANC_ENABLE_PLUGINS == 1 |
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1347 if (HasPlugins() && |
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|
1348 GetPlugins().HasCustomTranscoder()) |
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1349 { |
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1350 if (GetPlugins().Transcode(target, source, allowedSyntaxes, allowNewSopInstanceUid)) |
3944
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1351 { |
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1352 return true; |
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1353 } |
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1354 else if (builtinDecoderTranscoderOrder_ == BuiltinDecoderTranscoderOrder_After) |
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|
1355 { |
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|
1356 LOG(INFO) << "The installed transcoding plugins cannot handle an image, " |
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1357 << "fallback to the built-in DCMTK transcoder"; |
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1358 } |
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1359 } |
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|
1360 #endif |
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1361 |
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|
1362 if (builtinDecoderTranscoderOrder_ == BuiltinDecoderTranscoderOrder_After) |
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1363 { |
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|
1364 return dcmtkTranscoder_->Transcode(target, source, allowedSyntaxes, allowNewSopInstanceUid); |
3944
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1365 } |
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1366 else |
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1367 { |
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1368 return false; |
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1369 } |
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1370 } |
224 | 1371 } |