annotate Resources/Samples/Python/ManualModification.py @ 1917:7db4b909bec3

ManualModification sample
author Sebastien Jodogne <s.jodogne@gmail.com>
date Fri, 12 Feb 2016 11:14:25 +0100
parents
children 65b1ce7cb84f
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
1917
7db4b909bec3 ManualModification sample
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1 #!/usr/bin/python
7db4b909bec3 ManualModification sample
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
2
7db4b909bec3 ManualModification sample
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
3 # Orthanc - A Lightweight, RESTful DICOM Store
7db4b909bec3 ManualModification sample
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
4 # Copyright (C) 2012-2016 Sebastien Jodogne, Medical Physics
7db4b909bec3 ManualModification sample
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
5 # Department, University Hospital of Liege, Belgium
7db4b909bec3 ManualModification sample
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
6 #
7db4b909bec3 ManualModification sample
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
7 # This program is free software: you can redistribute it and/or
7db4b909bec3 ManualModification sample
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
8 # modify it under the terms of the GNU General Public License as
7db4b909bec3 ManualModification sample
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
9 # published by the Free Software Foundation, either version 3 of the
7db4b909bec3 ManualModification sample
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
10 # License, or (at your option) any later version.
7db4b909bec3 ManualModification sample
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
11 #
7db4b909bec3 ManualModification sample
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
12 # This program is distributed in the hope that it will be useful, but
7db4b909bec3 ManualModification sample
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
13 # WITHOUT ANY WARRANTY; without even the implied warranty of
7db4b909bec3 ManualModification sample
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
14 # MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
7db4b909bec3 ManualModification sample
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
15 # General Public License for more details.
7db4b909bec3 ManualModification sample
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
16 #
7db4b909bec3 ManualModification sample
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
17 # You should have received a copy of the GNU General Public License
7db4b909bec3 ManualModification sample
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
18 # along with this program. If not, see <http://www.gnu.org/licenses/>.
7db4b909bec3 ManualModification sample
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
19
7db4b909bec3 ManualModification sample
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
20
7db4b909bec3 ManualModification sample
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
21
7db4b909bec3 ManualModification sample
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
22 # This sample shows how to carry on a manual modification of DICOM
7db4b909bec3 ManualModification sample
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
23 # tags spread accross various levels (Patient/Study/Series/Instance)
7db4b909bec3 ManualModification sample
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
24 # that would normally forbidden as such by the REST API of Orthanc to
7db4b909bec3 ManualModification sample
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
25 # avoid breaking the DICOM hierarchy. This sample can be useful for
7db4b909bec3 ManualModification sample
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
26 # more complex anonymization/modification scenarios, or for optimizing
7db4b909bec3 ManualModification sample
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
27 # the disk usage (the original and the modified instances never
7db4b909bec3 ManualModification sample
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
28 # coexist).
7db4b909bec3 ManualModification sample
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
29
7db4b909bec3 ManualModification sample
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
30 from RestToolbox import *
7db4b909bec3 ManualModification sample
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
31
7db4b909bec3 ManualModification sample
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
32 URL = 'http://localhost:8042'
7db4b909bec3 ManualModification sample
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
33 STUDY = '27f7126f-4f66fb14-03f4081b-f9341db2-53925988'
7db4b909bec3 ManualModification sample
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
34
7db4b909bec3 ManualModification sample
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
35 identifiers = {}
7db4b909bec3 ManualModification sample
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
36
7db4b909bec3 ManualModification sample
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
37 for instance in DoGet('%s/studies/%s/instances' % (URL, STUDY)):
7db4b909bec3 ManualModification sample
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
38 # Setup the parameters of the modification
7db4b909bec3 ManualModification sample
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
39 replace = {
7db4b909bec3 ManualModification sample
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
40 "PatientID" : "Hello",
7db4b909bec3 ManualModification sample
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
41 "PatientName" : "Modified",
7db4b909bec3 ManualModification sample
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
42 "StationName" : "TEST",
7db4b909bec3 ManualModification sample
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
43 }
7db4b909bec3 ManualModification sample
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
44
7db4b909bec3 ManualModification sample
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
45 # Get the original UIDs of the instance
7db4b909bec3 ManualModification sample
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
46 seriesUID = DoGet('%s/instances/%s/content/SeriesInstanceUID' % (URL, instance['ID']))
7db4b909bec3 ManualModification sample
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
47 if seriesUID in identifiers:
7db4b909bec3 ManualModification sample
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
48 replace['SeriesInstanceUID'] = identifiers[seriesUID]
7db4b909bec3 ManualModification sample
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
49
7db4b909bec3 ManualModification sample
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
50 studyUID = DoGet('%s/instances/%s/content/StudyInstanceUID' % (URL, instance['ID']))
7db4b909bec3 ManualModification sample
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
51 if studyUID in identifiers:
7db4b909bec3 ManualModification sample
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
52 replace['StudyInstanceUID'] = identifiers[studyUID]
7db4b909bec3 ManualModification sample
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
53
7db4b909bec3 ManualModification sample
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
54 # Manually modify the instance
7db4b909bec3 ManualModification sample
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
55 print('Modifying instance %s' % instance['ID'])
7db4b909bec3 ManualModification sample
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
56 modified = DoPost('%s/instances/%s/modify' % (URL, instance['ID']),
7db4b909bec3 ManualModification sample
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
57 { "Replace" : replace })
7db4b909bec3 ManualModification sample
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
58
7db4b909bec3 ManualModification sample
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
59 # Remove the original instance
7db4b909bec3 ManualModification sample
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
60 DoDelete('%s/instances/%s' % (URL, instance['ID']))
7db4b909bec3 ManualModification sample
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
61
7db4b909bec3 ManualModification sample
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
62 # Add the modified instance
7db4b909bec3 ManualModification sample
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
63 modifiedId = DoPost('%s/instances' % URL, modified)['ID']
7db4b909bec3 ManualModification sample
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
64
7db4b909bec3 ManualModification sample
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
65 # Register the modified UIDs
7db4b909bec3 ManualModification sample
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
66 identifiers[seriesUID] = DoGet('%s/instances/%s/content/SeriesInstanceUID' % (URL, modifiedId))
7db4b909bec3 ManualModification sample
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
67 identifiers[studyUID] = DoGet('%s/instances/%s/content/StudyInstanceUID' % (URL, modifiedId))