annotate OrthancServer/FromDcmtkBridge.cpp @ 2158:728403a6ec1f

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author Sebastien Jodogne <s.jodogne@gmail.com>
date Fri, 18 Nov 2016 17:40:41 +0100
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1 /**
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2 * Orthanc - A Lightweight, RESTful DICOM Store
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3 * Copyright (C) 2012-2016 Sebastien Jodogne, Medical Physics
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4 * Department, University Hospital of Liege, Belgium
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5 *
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6 * This program is free software: you can redistribute it and/or
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7 * modify it under the terms of the GNU General Public License as
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8 * published by the Free Software Foundation, either version 3 of the
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9 * License, or (at your option) any later version.
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10 *
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11 * In addition, as a special exception, the copyright holders of this
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12 * program give permission to link the code of its release with the
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13 * OpenSSL project's "OpenSSL" library (or with modified versions of it
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14 * that use the same license as the "OpenSSL" library), and distribute
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15 * the linked executables. You must obey the GNU General Public License
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16 * in all respects for all of the code used other than "OpenSSL". If you
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17 * modify file(s) with this exception, you may extend this exception to
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18 * your version of the file(s), but you are not obligated to do so. If
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19 * you do not wish to do so, delete this exception statement from your
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20 * version. If you delete this exception statement from all source files
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21 * in the program, then also delete it here.
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22 *
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23 * This program is distributed in the hope that it will be useful, but
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24 * WITHOUT ANY WARRANTY; without even the implied warranty of
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25 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
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26 * General Public License for more details.
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27 *
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28 * You should have received a copy of the GNU General Public License
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29 * along with this program. If not, see <http://www.gnu.org/licenses/>.
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30 **/
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31
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32
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33 #include "PrecompiledHeadersServer.h"
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34
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35 #ifndef NOMINMAX
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36 #define NOMINMAX
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37 #endif
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39 #include "FromDcmtkBridge.h"
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40 #include "ToDcmtkBridge.h"
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41 #include "../Core/Logging.h"
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42 #include "../Core/Toolbox.h"
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43 #include "../Core/TemporaryFile.h"
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44 #include "../Core/OrthancException.h"
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45
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46 #include <list>
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47 #include <limits>
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48
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49 #include <boost/lexical_cast.hpp>
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50 #include <boost/filesystem.hpp>
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51 #include <boost/algorithm/string/predicate.hpp>
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52
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53 #include <dcmtk/dcmdata/dcdeftag.h>
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54 #include <dcmtk/dcmdata/dcdicent.h>
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55 #include <dcmtk/dcmdata/dcdict.h>
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56 #include <dcmtk/dcmdata/dcfilefo.h>
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57 #include <dcmtk/dcmdata/dcostrmb.h>
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58 #include <dcmtk/dcmdata/dcpixel.h>
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59 #include <dcmtk/dcmdata/dcuid.h>
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60 #include <dcmtk/dcmdata/dcistrmb.h>
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61
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62 #include <dcmtk/dcmdata/dcvrae.h>
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63 #include <dcmtk/dcmdata/dcvras.h>
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64 #include <dcmtk/dcmdata/dcvrat.h>
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65 #include <dcmtk/dcmdata/dcvrcs.h>
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66 #include <dcmtk/dcmdata/dcvrda.h>
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67 #include <dcmtk/dcmdata/dcvrds.h>
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68 #include <dcmtk/dcmdata/dcvrdt.h>
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69 #include <dcmtk/dcmdata/dcvrfd.h>
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70 #include <dcmtk/dcmdata/dcvrfl.h>
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71 #include <dcmtk/dcmdata/dcvris.h>
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72 #include <dcmtk/dcmdata/dcvrlo.h>
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73 #include <dcmtk/dcmdata/dcvrlt.h>
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74 #include <dcmtk/dcmdata/dcvrpn.h>
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75 #include <dcmtk/dcmdata/dcvrsh.h>
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76 #include <dcmtk/dcmdata/dcvrsl.h>
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77 #include <dcmtk/dcmdata/dcvrss.h>
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78 #include <dcmtk/dcmdata/dcvrst.h>
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79 #include <dcmtk/dcmdata/dcvrtm.h>
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80 #include <dcmtk/dcmdata/dcvrui.h>
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81 #include <dcmtk/dcmdata/dcvrul.h>
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82 #include <dcmtk/dcmdata/dcvrus.h>
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83 #include <dcmtk/dcmdata/dcvrut.h>
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84
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85
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86 #if DCMTK_USE_EMBEDDED_DICTIONARIES == 1
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87 #include <EmbeddedResources.h>
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88 #endif
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91 namespace Orthanc
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92 {
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93 static inline uint16_t GetCharValue(char c)
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94 {
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95 if (c >= '0' && c <= '9')
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96 return c - '0';
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97 else if (c >= 'a' && c <= 'f')
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98 return c - 'a' + 10;
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99 else if (c >= 'A' && c <= 'F')
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100 return c - 'A' + 10;
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101 else
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102 return 0;
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103 }
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104
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105 static inline uint16_t GetTagValue(const char* c)
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106 {
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107 return ((GetCharValue(c[0]) << 12) +
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108 (GetCharValue(c[1]) << 8) +
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109 (GetCharValue(c[2]) << 4) +
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110 GetCharValue(c[3]));
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111 }
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112
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113
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114 #if DCMTK_USE_EMBEDDED_DICTIONARIES == 1
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115 static void LoadEmbeddedDictionary(DcmDataDictionary& dictionary,
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116 EmbeddedResources::FileResourceId resource)
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117 {
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118 std::string content;
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119 EmbeddedResources::GetFileResource(content, resource);
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120
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121 TemporaryFile tmp;
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122 tmp.Write(content);
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123
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124 if (!dictionary.loadDictionary(tmp.GetPath().c_str()))
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125 {
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126 LOG(ERROR) << "Cannot read embedded dictionary. Under Windows, make sure that "
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127 << "your TEMP directory does not contain special characters.";
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128 throw OrthancException(ErrorCode_InternalError);
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129 }
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130 }
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131
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132 #else
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133 static void LoadExternalDictionary(DcmDataDictionary& dictionary,
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134 const std::string& directory,
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135 const std::string& filename)
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136 {
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137 boost::filesystem::path p = directory;
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138 p = p / filename;
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139
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140 LOG(WARNING) << "Loading the external DICOM dictionary " << p;
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141
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142 if (!dictionary.loadDictionary(p.string().c_str()))
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143 {
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144 throw OrthancException(ErrorCode_InternalError);
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145 }
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146 }
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147 #endif
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148
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149
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150 namespace
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151 {
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152 class DictionaryLocker
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153 {
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154 private:
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155 DcmDataDictionary& dictionary_;
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156
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157 public:
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158 DictionaryLocker() : dictionary_(dcmDataDict.wrlock())
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159 {
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160 }
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161
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162 ~DictionaryLocker()
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163 {
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164 dcmDataDict.unlock();
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165 }
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166
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167 DcmDataDictionary& operator*()
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168 {
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169 return dictionary_;
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170 }
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171
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172 DcmDataDictionary* operator->()
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173 {
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174 return &dictionary_;
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175 }
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176 };
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177 }
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178
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179
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180 void FromDcmtkBridge::InitializeDictionary(bool loadPrivateDictionary)
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181 {
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182 {
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183 DictionaryLocker locker;
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184
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185 locker->clear();
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186
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187 #if DCMTK_USE_EMBEDDED_DICTIONARIES == 1
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188 LOG(WARNING) << "Loading the embedded dictionaries";
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189 /**
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190 * Do not load DICONDE dictionary, it breaks the other tags. The
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191 * command "strace storescu 2>&1 |grep dic" shows that DICONDE
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192 * dictionary is not loaded by storescu.
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193 **/
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194 //LoadEmbeddedDictionary(*locker, EmbeddedResources::DICTIONARY_DICONDE);
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195
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196 LoadEmbeddedDictionary(*locker, EmbeddedResources::DICTIONARY_DICOM);
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197
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198 if (loadPrivateDictionary)
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199 {
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200 LOG(INFO) << "Loading the embedded dictionary of private tags";
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201 LoadEmbeddedDictionary(*locker, EmbeddedResources::DICTIONARY_PRIVATE);
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202 }
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203 else
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204 {
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205 LOG(INFO) << "The dictionary of private tags has not been loaded";
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206 }
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207
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208 #elif defined(__linux__) || defined(__FreeBSD_kernel__)
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209 std::string path = DCMTK_DICTIONARY_DIR;
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210
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211 const char* env = std::getenv(DCM_DICT_ENVIRONMENT_VARIABLE);
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212 if (env != NULL)
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213 {
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214 path = std::string(env);
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215 }
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216
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217 LoadExternalDictionary(*locker, path, "dicom.dic");
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218
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219 if (loadPrivateDictionary)
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220 {
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221 LoadExternalDictionary(*locker, path, "private.dic");
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222 }
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223 else
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224 {
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225 LOG(INFO) << "The dictionary of private tags has not been loaded";
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226 }
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227
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228 #else
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229 #error Support your platform here
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230 #endif
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231 }
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232
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233 /* make sure data dictionary is loaded */
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234 if (!dcmDataDict.isDictionaryLoaded())
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235 {
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236 LOG(ERROR) << "No DICOM dictionary loaded, check environment variable: " << DCM_DICT_ENVIRONMENT_VARIABLE;
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237 throw OrthancException(ErrorCode_InternalError);
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238 }
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239
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240 {
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241 // Test the dictionary with a simple DICOM tag
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242 DcmTag key(0x0010, 0x1030); // This is PatientWeight
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243 if (key.getEVR() != EVR_DS)
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244 {
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245 LOG(ERROR) << "The DICOM dictionary has not been correctly read";
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246 throw OrthancException(ErrorCode_InternalError);
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247 }
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248 }
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249 }
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250
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251
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252 void FromDcmtkBridge::RegisterDictionaryTag(const DicomTag& tag,
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6301bbcbcaed more generic support of value representations
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253 ValueRepresentation vr,
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254 const std::string& name,
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255 unsigned int minMultiplicity,
2115
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256 unsigned int maxMultiplicity,
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257 const std::string& privateCreator)
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258 {
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259 if (minMultiplicity < 1)
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260 {
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261 throw OrthancException(ErrorCode_ParameterOutOfRange);
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262 }
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263
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diff changeset
264 bool arbitrary = false;
1657
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265 if (maxMultiplicity == 0)
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266 {
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267 maxMultiplicity = DcmVariableVM;
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268 arbitrary = true;
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269 }
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270 else if (maxMultiplicity < minMultiplicity)
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271 {
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272 throw OrthancException(ErrorCode_ParameterOutOfRange);
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273 }
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274
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275 DcmEVR evr = ToDcmtkBridge::Convert(vr);
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276
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277 LOG(INFO) << "Registering tag in dictionary: " << tag << " " << (DcmVR(evr).getValidVRName()) << " "
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278 << name << " (multiplicity: " << minMultiplicity << "-"
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279 << (arbitrary ? "n" : boost::lexical_cast<std::string>(maxMultiplicity)) << ")";
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280
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281 std::auto_ptr<DcmDictEntry> entry;
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282 if (privateCreator.empty())
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283 {
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284 if (tag.GetGroup() % 2 == 1)
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285 {
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286 char buf[128];
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287 sprintf(buf, "Warning: You are registering a private tag (%04x,%04x), "
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288 "but no private creator was associated with it",
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289 tag.GetGroup(), tag.GetElement());
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290 LOG(WARNING) << buf;
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291 }
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292
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293 entry.reset(new DcmDictEntry(tag.GetGroup(),
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294 tag.GetElement(),
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295 evr, name.c_str(),
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296 static_cast<int>(minMultiplicity),
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297 static_cast<int>(maxMultiplicity),
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298 NULL /* version */,
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299 OFTrue /* doCopyString */,
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300 NULL /* private creator */));
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301 }
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302 else
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303 {
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304 // "Private Data Elements have an odd Group Number that is not
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305 // (0001,eeee), (0003,eeee), (0005,eeee), (0007,eeee), or
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306 // (FFFF,eeee)."
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307 if (tag.GetGroup() % 2 == 0 /* even */ ||
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308 tag.GetGroup() == 0x0001 ||
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309 tag.GetGroup() == 0x0003 ||
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310 tag.GetGroup() == 0x0005 ||
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311 tag.GetGroup() == 0x0007 ||
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diff changeset
312 tag.GetGroup() == 0xffff)
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313 {
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314 char buf[128];
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315 sprintf(buf, "Trying to register private tag (%04x,%04x), but it must have an odd group >= 0x0009",
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316 tag.GetGroup(), tag.GetElement());
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317 LOG(ERROR) << buf;
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318 throw OrthancException(ErrorCode_ParameterOutOfRange);
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319 }
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320
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321 entry.reset(new DcmDictEntry(tag.GetGroup(),
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322 tag.GetElement(),
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323 evr, name.c_str(),
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324 static_cast<int>(minMultiplicity),
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325 static_cast<int>(maxMultiplicity),
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326 "private" /* version */,
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327 OFTrue /* doCopyString */,
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328 privateCreator.c_str()));
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329 }
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330
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331 entry->setGroupRangeRestriction(DcmDictRange_Unspecified);
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332 entry->setElementRangeRestriction(DcmDictRange_Unspecified);
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diff changeset
333
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diff changeset
334 {
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diff changeset
335 DictionaryLocker locker;
2116
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336
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337 if (locker->findEntry(name.c_str()))
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diff changeset
338 {
2fabd1073728 prevent registering two tags with the same symbolic name
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339 LOG(ERROR) << "Cannot register two tags with the same symbolic name \"" << name << "\"";
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340 throw OrthancException(ErrorCode_AlreadyExistingTag);
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341 }
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342
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343 locker->addEntry(entry.release());
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344 }
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diff changeset
345 }
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diff changeset
346
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347
1936
dba0db0a94b4 generalization
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diff changeset
348 Encoding FromDcmtkBridge::DetectEncoding(DcmItem& dataset,
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diff changeset
349 Encoding defaultEncoding)
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diff changeset
350 {
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351 Encoding encoding = defaultEncoding;
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diff changeset
352
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diff changeset
353 OFString tmp;
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354 if (dataset.findAndGetOFString(DCM_SpecificCharacterSet, tmp).good())
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355 {
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356 std::string characterSet = Toolbox::StripSpaces(std::string(tmp.c_str()));
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357
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diff changeset
358 if (characterSet.empty())
957
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diff changeset
359 {
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360 // Empty specific character set tag: Use the default encoding
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diff changeset
361 }
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362 else if (GetDicomEncoding(encoding, characterSet.c_str()))
1087
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diff changeset
363 {
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diff changeset
364 // The specific character set is supported by the Orthanc core
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e07b90fb00eb more encodings
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diff changeset
365 }
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diff changeset
366 else
1087
e07b90fb00eb more encodings
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diff changeset
367 {
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diff changeset
368 LOG(WARNING) << "Value of Specific Character Set (0008,0005) is not supported: " << characterSet
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369 << ", fallback to ASCII (remove all special characters)";
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diff changeset
370 encoding = Encoding_Ascii;
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diff changeset
371 }
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diff changeset
372 }
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373 else
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374 {
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375 // No specific character set tag: Use the default encoding
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diff changeset
376 }
957
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diff changeset
377
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diff changeset
378 return encoding;
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379 }
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diff changeset
380
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diff changeset
381
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b9bd52c72ba2 cleaning up
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diff changeset
382 void FromDcmtkBridge::ExtractDicomSummary(DicomMap& target,
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383 DcmItem& dataset,
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diff changeset
384 unsigned int maxStringLength,
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diff changeset
385 Encoding defaultEncoding)
0
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parents:
diff changeset
386 {
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diff changeset
387 Encoding encoding = DetectEncoding(dataset, defaultEncoding);
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diff changeset
388
0
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389 target.Clear();
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390 for (unsigned long i = 0; i < dataset.card(); i++)
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diff changeset
391 {
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392 DcmElement* element = dataset.getElement(i);
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393 if (element && element->isLeaf())
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parents:
diff changeset
394 {
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diff changeset
395 target.SetValue(element->getTag().getGTag(),
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diff changeset
396 element->getTag().getETag(),
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cda5b0ab4ce5 ORTHANC_MAXIMUM_TAG_LENGTH made explicit
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parents: 1928
diff changeset
397 ConvertLeafElement(*element, DicomToJsonFlags_Default, maxStringLength, encoding));
0
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diff changeset
398 }
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
399 }
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
400 }
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
401
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
402
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2f76b92addd4 keep private tags during anonymization
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parents: 957
diff changeset
403 DicomTag FromDcmtkBridge::Convert(const DcmTag& tag)
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parents: 957
diff changeset
404 {
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parents: 957
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405 return DicomTag(tag.getGTag(), tag.getETag());
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parents: 957
diff changeset
406 }
2f76b92addd4 keep private tags during anonymization
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parents: 957
diff changeset
407
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parents: 957
diff changeset
408
0
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diff changeset
409 DicomTag FromDcmtkBridge::GetTag(const DcmElement& element)
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parents:
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410 {
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411 return DicomTag(element.getGTag(), element.getETag());
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parents:
diff changeset
412 }
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parents:
diff changeset
413
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parents:
diff changeset
414
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parents: 949
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415 DicomValue* FromDcmtkBridge::ConvertLeafElement(DcmElement& element,
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parents: 1735
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416 DicomToJsonFlags flags,
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parents: 1928
diff changeset
417 unsigned int maxStringLength,
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418 Encoding encoding)
0
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419 {
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420 if (!element.isLeaf())
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421 {
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422 // This function is only applicable to leaf elements
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423 throw OrthancException(ErrorCode_BadParameterType);
0
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424 }
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425
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426 char *c = NULL;
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427 if (element.isaString() &&
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428 element.getString(c).good())
0
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429 {
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430 if (c == NULL) // This case corresponds to the empty string
0
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431 {
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432 return new DicomValue("", false);
0
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433 }
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434 else
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435 {
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436 std::string s(c);
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437 std::string utf8 = Toolbox::ConvertToUtf8(s, encoding);
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parents: 1831
diff changeset
438
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parents: 1928
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439 if (maxStringLength != 0 &&
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parents: 1928
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440 utf8.size() > maxStringLength)
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parents: 1831
diff changeset
441 {
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442 return new DicomValue; // Too long, create a NULL value
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parents: 1831
diff changeset
443 }
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parents: 1831
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444 else
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parents: 1831
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445 {
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446 return new DicomValue(utf8, false);
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parents: 1831
diff changeset
447 }
0
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parents:
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448 }
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parents:
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449 }
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parents:
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450
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451
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parents: 2126
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452 if (element.getVR() == EVR_UN)
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parents: 2126
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453 {
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454 // Unknown value representation: Lookup in the dictionary. This
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455 // is notably the case for private tags registered with the
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456 // "Dictionary" configuration option.
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457 DictionaryLocker locker;
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458
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459 const DcmDictEntry* entry = locker->findEntry(element.getTag().getXTag(),
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460 element.getTag().getPrivateCreator());
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parents: 2126
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461 if (entry != NULL &&
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462 entry->getVR().isaString())
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parents: 2126
diff changeset
463 {
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464 Uint8* data = NULL;
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parents: 2126
diff changeset
465
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466 // At (*), we do not try and convert to UTF-8, as nothing says
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467 // the encoding of the private tag is the same as that of the
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parents: 2126
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468 // remaining of the DICOM dataset. Only go for ASCII strings.
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diff changeset
469
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470 if (element.getUint8Array(data) == EC_Normal &&
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471 Toolbox::IsAsciiString(data, element.getLength())) // (*)
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parents: 2126
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472 {
0c09d1af22f3 "/tools/invalidate-tags" to invalidate the JSON summary of all the DICOM files
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parents: 2126
diff changeset
473 if (data == NULL)
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parents: 2126
diff changeset
474 {
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parents: 2126
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475 return new DicomValue("", false); // Empty string
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parents: 2126
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476 }
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parents: 2126
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477 else if (maxStringLength != 0 &&
0c09d1af22f3 "/tools/invalidate-tags" to invalidate the JSON summary of all the DICOM files
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parents: 2126
diff changeset
478 element.getLength() > maxStringLength)
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parents: 2126
diff changeset
479 {
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480 return new DicomValue; // Too long, create a NULL value
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parents: 2126
diff changeset
481 }
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parents: 2126
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482 else
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parents: 2126
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483 {
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parents: 2126
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484 std::string s(reinterpret_cast<const char*>(data), element.getLength());
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parents: 2126
diff changeset
485 return new DicomValue(s, false);
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parents: 2126
diff changeset
486 }
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parents: 2126
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487 }
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parents: 2126
diff changeset
488 }
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parents: 2126
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489 }
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parents: 2126
diff changeset
490
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parents: 2126
diff changeset
491
0
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parents:
diff changeset
492 try
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
493 {
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parents:
diff changeset
494 // http://support.dcmtk.org/docs/dcvr_8h-source.html
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diff changeset
495 switch (element.getVR())
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parents:
diff changeset
496 {
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parents:
diff changeset
497
3959d33612cc initial commit
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parents:
diff changeset
498 /**
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parents: 1737
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499 * Deal with binary data (including PixelData).
0
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parents:
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500 **/
306
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diff changeset
501
302
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502 case EVR_OB: // other byte
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parents: 291
diff changeset
503 case EVR_OF: // other float
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parents: 291
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504 case EVR_OW: // other word
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parents: 291
diff changeset
505 case EVR_UN: // unknown value representation
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parents: 1738
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506 case EVR_ox: // OB or OW depending on context
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parents: 305
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507 case EVR_DS: // decimal string
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parents: 305
diff changeset
508 case EVR_IS: // integer string
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parents: 305
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509 case EVR_AS: // age string
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parents: 305
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510 case EVR_DA: // date string
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parents: 305
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511 case EVR_DT: // date time string
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diff changeset
512 case EVR_TM: // time string
302
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diff changeset
513 case EVR_AE: // application entity title
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parents: 291
diff changeset
514 case EVR_CS: // code string
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parents: 291
diff changeset
515 case EVR_SH: // short string
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parents: 291
diff changeset
516 case EVR_LO: // long string
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parents: 291
diff changeset
517 case EVR_ST: // short text
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parents: 291
diff changeset
518 case EVR_LT: // long text
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parents: 291
diff changeset
519 case EVR_UT: // unlimited text
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parents: 291
diff changeset
520 case EVR_PN: // person name
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diff changeset
521 case EVR_UI: // unique identifier
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parents: 1792
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522 case EVR_UNKNOWN: // used internally for elements with unknown VR (encoded with 4-byte length field in explicit VR)
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parents: 1792
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523 case EVR_UNKNOWN2B: // used internally for elements with unknown VR with 2-byte length field in explicit VR
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parents: 1792
diff changeset
524 {
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Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1792
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525 if (!(flags & DicomToJsonFlags_ConvertBinaryToNull))
1065401501fb ParsedDicomFile::CreateFromJson
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parents: 1792
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526 {
1065401501fb ParsedDicomFile::CreateFromJson
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527 Uint8* data = NULL;
1065401501fb ParsedDicomFile::CreateFromJson
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parents: 1792
diff changeset
528 if (element.getUint8Array(data) == EC_Normal)
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parents: 1792
diff changeset
529 {
1065401501fb ParsedDicomFile::CreateFromJson
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parents: 1792
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530 return new DicomValue(reinterpret_cast<const char*>(data), element.getLength(), true);
1065401501fb ParsedDicomFile::CreateFromJson
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parents: 1792
diff changeset
531 }
1065401501fb ParsedDicomFile::CreateFromJson
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parents: 1792
diff changeset
532 }
0
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
533
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parents: 1792
diff changeset
534 return new DicomValue;
1065401501fb ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1792
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535 }
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Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1792
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536
1065401501fb ParsedDicomFile::CreateFromJson
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parents: 1792
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537 /**
2115
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parents: 2076
diff changeset
538 * Numeric types
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diff changeset
539 **/
0
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diff changeset
540
302
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diff changeset
541 case EVR_SL: // signed long
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diff changeset
542 {
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parents: 291
diff changeset
543 Sint32 f;
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parents: 291
diff changeset
544 if (dynamic_cast<DcmSignedLong&>(element).getSint32(f).good())
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ec66a16aa398 removal of DicomStringValue and DicomNullValue
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parents: 1736
diff changeset
545 return new DicomValue(boost::lexical_cast<std::string>(f), false);
302
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diff changeset
546 else
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ec66a16aa398 removal of DicomStringValue and DicomNullValue
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parents: 1736
diff changeset
547 return new DicomValue;
302
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diff changeset
548 }
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parents: 291
diff changeset
549
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parents: 291
diff changeset
550 case EVR_SS: // signed short
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parents: 291
diff changeset
551 {
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parents: 291
diff changeset
552 Sint16 f;
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parents: 291
diff changeset
553 if (dynamic_cast<DcmSignedShort&>(element).getSint16(f).good())
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ec66a16aa398 removal of DicomStringValue and DicomNullValue
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parents: 1736
diff changeset
554 return new DicomValue(boost::lexical_cast<std::string>(f), false);
302
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diff changeset
555 else
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ec66a16aa398 removal of DicomStringValue and DicomNullValue
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parents: 1736
diff changeset
556 return new DicomValue;
302
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diff changeset
557 }
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parents: 291
diff changeset
558
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parents: 291
diff changeset
559 case EVR_UL: // unsigned long
238134081136 modification of dicom files
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parents: 291
diff changeset
560 {
238134081136 modification of dicom files
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parents: 291
diff changeset
561 Uint32 f;
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parents: 291
diff changeset
562 if (dynamic_cast<DcmUnsignedLong&>(element).getUint32(f).good())
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ec66a16aa398 removal of DicomStringValue and DicomNullValue
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parents: 1736
diff changeset
563 return new DicomValue(boost::lexical_cast<std::string>(f), false);
302
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diff changeset
564 else
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ec66a16aa398 removal of DicomStringValue and DicomNullValue
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parents: 1736
diff changeset
565 return new DicomValue;
302
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diff changeset
566 }
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parents: 291
diff changeset
567
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parents: 291
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568 case EVR_US: // unsigned short
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parents: 291
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569 {
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570 Uint16 f;
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571 if (dynamic_cast<DcmUnsignedShort&>(element).getUint16(f).good())
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ec66a16aa398 removal of DicomStringValue and DicomNullValue
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572 return new DicomValue(boost::lexical_cast<std::string>(f), false);
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573 else
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parents: 1736
diff changeset
574 return new DicomValue;
302
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diff changeset
575 }
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parents: 291
diff changeset
576
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577 case EVR_FL: // float single-precision
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578 {
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579 Float32 f;
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580 if (dynamic_cast<DcmFloatingPointSingle&>(element).getFloat32(f).good())
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parents: 1736
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581 return new DicomValue(boost::lexical_cast<std::string>(f), false);
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582 else
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parents: 1736
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583 return new DicomValue;
302
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parents: 291
diff changeset
584 }
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parents: 291
diff changeset
585
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586 case EVR_FD: // float double-precision
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587 {
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588 Float64 f;
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parents: 291
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589 if (dynamic_cast<DcmFloatingPointDouble&>(element).getFloat64(f).good())
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ec66a16aa398 removal of DicomStringValue and DicomNullValue
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590 return new DicomValue(boost::lexical_cast<std::string>(f), false);
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diff changeset
591 else
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parents: 1736
diff changeset
592 return new DicomValue;
1131
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parents: 1093
diff changeset
593 }
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parents: 1093
diff changeset
594
ac6bd50a8c83 fix issue 16
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parents: 1093
diff changeset
595
ac6bd50a8c83 fix issue 16
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parents: 1093
diff changeset
596 /**
ac6bd50a8c83 fix issue 16
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parents: 1093
diff changeset
597 * Attribute tag.
ac6bd50a8c83 fix issue 16
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1093
diff changeset
598 **/
ac6bd50a8c83 fix issue 16
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1093
diff changeset
599
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parents: 1093
diff changeset
600 case EVR_AT:
ac6bd50a8c83 fix issue 16
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parents: 1093
diff changeset
601 {
1147
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parents: 1131
diff changeset
602 DcmTagKey tag;
ae9a83a6fa47 simplification
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parents: 1131
diff changeset
603 if (dynamic_cast<DcmAttributeTag&>(element).getTagVal(tag, 0).good())
ae9a83a6fa47 simplification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1131
diff changeset
604 {
ae9a83a6fa47 simplification
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parents: 1131
diff changeset
605 DicomTag t(tag.getGroup(), tag.getElement());
1737
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parents: 1736
diff changeset
606 return new DicomValue(t.Format(), false);
1147
ae9a83a6fa47 simplification
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parents: 1131
diff changeset
607 }
1131
ac6bd50a8c83 fix issue 16
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1093
diff changeset
608 else
1147
ae9a83a6fa47 simplification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1131
diff changeset
609 {
1737
ec66a16aa398 removal of DicomStringValue and DicomNullValue
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1736
diff changeset
610 return new DicomValue;
1147
ae9a83a6fa47 simplification
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parents: 1131
diff changeset
611 }
302
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parents: 291
diff changeset
612 }
0
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
613
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
614
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
615 /**
302
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parents: 291
diff changeset
616 * Sequence types, should never occur at this point because of
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parents: 291
diff changeset
617 * "element.isLeaf()".
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parents: 291
diff changeset
618 **/
0
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parents:
diff changeset
619
302
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diff changeset
620 case EVR_SQ: // sequence of items
1737
ec66a16aa398 removal of DicomStringValue and DicomNullValue
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parents: 1736
diff changeset
621 return new DicomValue;
0
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
622
3959d33612cc initial commit
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parents:
diff changeset
623
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parents: 291
diff changeset
624 /**
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parents: 291
diff changeset
625 * Internal to DCMTK.
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diff changeset
626 **/
0
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parents:
diff changeset
627
302
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diff changeset
628 case EVR_xs: // SS or US depending on context
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diff changeset
629 case EVR_lt: // US, SS or OW depending on context, used for LUT Data (thus the name)
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parents: 291
diff changeset
630 case EVR_na: // na="not applicable", for data which has no VR
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parents: 291
diff changeset
631 case EVR_up: // up="unsigned pointer", used internally for DICOMDIR suppor
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parents: 291
diff changeset
632 case EVR_item: // used internally for items
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parents: 291
diff changeset
633 case EVR_metainfo: // used internally for meta info datasets
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parents: 291
diff changeset
634 case EVR_dataset: // used internally for datasets
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parents: 291
diff changeset
635 case EVR_fileFormat: // used internally for DICOM files
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diff changeset
636 case EVR_dicomDir: // used internally for DICOMDIR objects
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parents: 291
diff changeset
637 case EVR_dirRecord: // used internally for DICOMDIR records
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parents: 291
diff changeset
638 case EVR_pixelSQ: // used internally for pixel sequences in a compressed image
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parents: 291
diff changeset
639 case EVR_pixelItem: // used internally for pixel items in a compressed image
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parents: 291
diff changeset
640 case EVR_PixelData: // used internally for uncompressed pixeld data
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parents: 291
diff changeset
641 case EVR_OverlayData: // used internally for overlay data
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parents: 1736
diff changeset
642 return new DicomValue;
0
3959d33612cc initial commit
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parents:
diff changeset
643
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parents:
diff changeset
644
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645 /**
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parents: 291
diff changeset
646 * Default case.
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parents: 291
diff changeset
647 **/
0
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parents:
diff changeset
648
302
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diff changeset
649 default:
1737
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parents: 1736
diff changeset
650 return new DicomValue;
0
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parents:
diff changeset
651 }
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
652 }
3959d33612cc initial commit
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parents:
diff changeset
653 catch (boost::bad_lexical_cast)
3959d33612cc initial commit
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parents:
diff changeset
654 {
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ec66a16aa398 removal of DicomStringValue and DicomNullValue
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parents: 1736
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655 return new DicomValue;
0
3959d33612cc initial commit
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parents:
diff changeset
656 }
306
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parents: 305
diff changeset
657 catch (std::bad_cast)
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parents: 305
diff changeset
658 {
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parents: 1736
diff changeset
659 return new DicomValue;
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parents: 305
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660 }
0
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parents:
diff changeset
661 }
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
662
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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663
1687
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parents: 1686
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664 static Json::Value& PrepareNode(Json::Value& parent,
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parents: 1686
diff changeset
665 DcmElement& element,
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parents: 1686
diff changeset
666 DicomToJsonFormat format)
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parents:
diff changeset
667 {
1687
4d80fc990dae refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1686
diff changeset
668 assert(parent.type() == Json::objectValue);
0
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
669
35
f6d12037f886 full json vs. simplified json
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2
diff changeset
670 DicomTag tag(FromDcmtkBridge::GetTag(element));
305
86bb79522f19 name of the private tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 304
diff changeset
671 const std::string formattedTag = tag.Format();
86bb79522f19 name of the private tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 304
diff changeset
672
1688
27d70e9ee2e4 DicomToJsonFormat enumeration
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1687
diff changeset
673 if (format == DicomToJsonFormat_Short)
27d70e9ee2e4 DicomToJsonFormat enumeration
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1687
diff changeset
674 {
27d70e9ee2e4 DicomToJsonFormat enumeration
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1687
diff changeset
675 parent[formattedTag] = Json::nullValue;
27d70e9ee2e4 DicomToJsonFormat enumeration
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1687
diff changeset
676 return parent[formattedTag];
27d70e9ee2e4 DicomToJsonFormat enumeration
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1687
diff changeset
677 }
27d70e9ee2e4 DicomToJsonFormat enumeration
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1687
diff changeset
678
27d70e9ee2e4 DicomToJsonFormat enumeration
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1687
diff changeset
679 // This code gives access to the name of the private tags
2115
a657f7772e69 Handling of private tags/creators in the "Dictionary" configuration option
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2076
diff changeset
680 std::string tagName = FromDcmtkBridge::GetTagName(element);
1688
27d70e9ee2e4 DicomToJsonFormat enumeration
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1687
diff changeset
681
27d70e9ee2e4 DicomToJsonFormat enumeration
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1687
diff changeset
682 switch (format)
0
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
683 {
1860
c7d70f659190 DicomToJsonFormat_Simple -> DicomToJsonFormat_Human
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1854
diff changeset
684 case DicomToJsonFormat_Human:
1688
27d70e9ee2e4 DicomToJsonFormat enumeration
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1687
diff changeset
685 parent[tagName] = Json::nullValue;
27d70e9ee2e4 DicomToJsonFormat enumeration
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1687
diff changeset
686 return parent[tagName];
27d70e9ee2e4 DicomToJsonFormat enumeration
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1687
diff changeset
687
27d70e9ee2e4 DicomToJsonFormat enumeration
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1687
diff changeset
688 case DicomToJsonFormat_Full:
27d70e9ee2e4 DicomToJsonFormat enumeration
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1687
diff changeset
689 {
27d70e9ee2e4 DicomToJsonFormat enumeration
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1687
diff changeset
690 parent[formattedTag] = Json::objectValue;
27d70e9ee2e4 DicomToJsonFormat enumeration
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1687
diff changeset
691 Json::Value& node = parent[formattedTag];
27d70e9ee2e4 DicomToJsonFormat enumeration
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1687
diff changeset
692
27d70e9ee2e4 DicomToJsonFormat enumeration
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1687
diff changeset
693 if (element.isLeaf())
27d70e9ee2e4 DicomToJsonFormat enumeration
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1687
diff changeset
694 {
27d70e9ee2e4 DicomToJsonFormat enumeration
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1687
diff changeset
695 node["Name"] = tagName;
35
f6d12037f886 full json vs. simplified json
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2
diff changeset
696
2076
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2074
diff changeset
697 if (element.getTag().getPrivateCreator() != NULL)
1688
27d70e9ee2e4 DicomToJsonFormat enumeration
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1687
diff changeset
698 {
2076
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2074
diff changeset
699 node["PrivateCreator"] = element.getTag().getPrivateCreator();
1688
27d70e9ee2e4 DicomToJsonFormat enumeration
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1687
diff changeset
700 }
27d70e9ee2e4 DicomToJsonFormat enumeration
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1687
diff changeset
701
27d70e9ee2e4 DicomToJsonFormat enumeration
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1687
diff changeset
702 return node;
27d70e9ee2e4 DicomToJsonFormat enumeration
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1687
diff changeset
703 }
27d70e9ee2e4 DicomToJsonFormat enumeration
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1687
diff changeset
704 else
27d70e9ee2e4 DicomToJsonFormat enumeration
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1687
diff changeset
705 {
27d70e9ee2e4 DicomToJsonFormat enumeration
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1687
diff changeset
706 node["Name"] = tagName;
27d70e9ee2e4 DicomToJsonFormat enumeration
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1687
diff changeset
707 node["Type"] = "Sequence";
27d70e9ee2e4 DicomToJsonFormat enumeration
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1687
diff changeset
708 node["Value"] = Json::nullValue;
27d70e9ee2e4 DicomToJsonFormat enumeration
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1687
diff changeset
709 return node["Value"];
27d70e9ee2e4 DicomToJsonFormat enumeration
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1687
diff changeset
710 }
306
326d5a4a5af3 modification of instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 305
diff changeset
711 }
326d5a4a5af3 modification of instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 305
diff changeset
712
1688
27d70e9ee2e4 DicomToJsonFormat enumeration
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1687
diff changeset
713 default:
27d70e9ee2e4 DicomToJsonFormat enumeration
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1687
diff changeset
714 throw OrthancException(ErrorCode_ParameterOutOfRange);
1687
4d80fc990dae refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1686
diff changeset
715 }
4d80fc990dae refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1686
diff changeset
716 }
4d80fc990dae refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1686
diff changeset
717
4d80fc990dae refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1686
diff changeset
718
4d80fc990dae refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1686
diff changeset
719 static void LeafValueToJson(Json::Value& target,
4d80fc990dae refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1686
diff changeset
720 const DicomValue& value,
4d80fc990dae refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1686
diff changeset
721 DicomToJsonFormat format,
1738
15a788a63846 DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1737
diff changeset
722 DicomToJsonFlags flags,
1688
27d70e9ee2e4 DicomToJsonFormat enumeration
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1687
diff changeset
723 unsigned int maxStringLength)
1687
4d80fc990dae refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1686
diff changeset
724 {
1738
15a788a63846 DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1737
diff changeset
725 Json::Value* targetValue = NULL;
15a788a63846 DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1737
diff changeset
726 Json::Value* targetType = NULL;
15a788a63846 DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1737
diff changeset
727
1688
27d70e9ee2e4 DicomToJsonFormat enumeration
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1687
diff changeset
728 switch (format)
1687
4d80fc990dae refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1686
diff changeset
729 {
1688
27d70e9ee2e4 DicomToJsonFormat enumeration
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1687
diff changeset
730 case DicomToJsonFormat_Short:
1860
c7d70f659190 DicomToJsonFormat_Simple -> DicomToJsonFormat_Human
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1854
diff changeset
731 case DicomToJsonFormat_Human:
1688
27d70e9ee2e4 DicomToJsonFormat enumeration
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1687
diff changeset
732 {
27d70e9ee2e4 DicomToJsonFormat enumeration
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1687
diff changeset
733 assert(target.type() == Json::nullValue);
1738
15a788a63846 DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1737
diff changeset
734 targetValue = &target;
1688
27d70e9ee2e4 DicomToJsonFormat enumeration
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1687
diff changeset
735 break;
27d70e9ee2e4 DicomToJsonFormat enumeration
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1687
diff changeset
736 }
27d70e9ee2e4 DicomToJsonFormat enumeration
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1687
diff changeset
737
27d70e9ee2e4 DicomToJsonFormat enumeration
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1687
diff changeset
738 case DicomToJsonFormat_Full:
0
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
739 {
1688
27d70e9ee2e4 DicomToJsonFormat enumeration
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1687
diff changeset
740 assert(target.type() == Json::objectValue);
1738
15a788a63846 DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1737
diff changeset
741 target["Value"] = Json::nullValue;
15a788a63846 DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1737
diff changeset
742 target["Type"] = Json::nullValue;
15a788a63846 DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1737
diff changeset
743 targetType = &target["Type"];
15a788a63846 DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1737
diff changeset
744 targetValue = &target["Value"];
1688
27d70e9ee2e4 DicomToJsonFormat enumeration
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1687
diff changeset
745 break;
0
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
746 }
1688
27d70e9ee2e4 DicomToJsonFormat enumeration
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1687
diff changeset
747
27d70e9ee2e4 DicomToJsonFormat enumeration
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1687
diff changeset
748 default:
27d70e9ee2e4 DicomToJsonFormat enumeration
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1687
diff changeset
749 throw OrthancException(ErrorCode_ParameterOutOfRange);
1687
4d80fc990dae refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1686
diff changeset
750 }
1738
15a788a63846 DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1737
diff changeset
751
15a788a63846 DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1737
diff changeset
752 assert(targetValue != NULL);
15a788a63846 DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1737
diff changeset
753 assert(targetValue->type() == Json::nullValue);
15a788a63846 DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1737
diff changeset
754 assert(targetType == NULL || targetType->type() == Json::nullValue);
15a788a63846 DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1737
diff changeset
755
15a788a63846 DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1737
diff changeset
756 if (value.IsNull())
15a788a63846 DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1737
diff changeset
757 {
15a788a63846 DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1737
diff changeset
758 if (targetType != NULL)
15a788a63846 DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1737
diff changeset
759 {
15a788a63846 DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1737
diff changeset
760 *targetType = "Null";
15a788a63846 DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1737
diff changeset
761 }
15a788a63846 DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1737
diff changeset
762 }
15a788a63846 DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1737
diff changeset
763 else if (value.IsBinary())
15a788a63846 DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1737
diff changeset
764 {
15a788a63846 DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1737
diff changeset
765 if (flags & DicomToJsonFlags_ConvertBinaryToAscii)
15a788a63846 DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1737
diff changeset
766 {
15a788a63846 DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1737
diff changeset
767 *targetValue = Toolbox::ConvertToAscii(value.GetContent());
15a788a63846 DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1737
diff changeset
768 }
15a788a63846 DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1737
diff changeset
769 else
15a788a63846 DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1737
diff changeset
770 {
15a788a63846 DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1737
diff changeset
771 std::string s;
15a788a63846 DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1737
diff changeset
772 value.FormatDataUriScheme(s);
15a788a63846 DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1737
diff changeset
773 *targetValue = s;
15a788a63846 DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1737
diff changeset
774 }
15a788a63846 DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1737
diff changeset
775
15a788a63846 DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1737
diff changeset
776 if (targetType != NULL)
15a788a63846 DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1737
diff changeset
777 {
15a788a63846 DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1737
diff changeset
778 *targetType = "Binary";
15a788a63846 DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1737
diff changeset
779 }
15a788a63846 DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1737
diff changeset
780 }
15a788a63846 DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1737
diff changeset
781 else if (maxStringLength == 0 ||
15a788a63846 DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1737
diff changeset
782 value.GetContent().size() <= maxStringLength)
15a788a63846 DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1737
diff changeset
783 {
15a788a63846 DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1737
diff changeset
784 *targetValue = value.GetContent();
15a788a63846 DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1737
diff changeset
785
15a788a63846 DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1737
diff changeset
786 if (targetType != NULL)
15a788a63846 DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1737
diff changeset
787 {
15a788a63846 DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1737
diff changeset
788 *targetType = "String";
15a788a63846 DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1737
diff changeset
789 }
15a788a63846 DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1737
diff changeset
790 }
15a788a63846 DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1737
diff changeset
791 else
15a788a63846 DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1737
diff changeset
792 {
15a788a63846 DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1737
diff changeset
793 if (targetType != NULL)
15a788a63846 DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1737
diff changeset
794 {
15a788a63846 DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1737
diff changeset
795 *targetType = "TooLong";
15a788a63846 DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1737
diff changeset
796 }
15a788a63846 DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1737
diff changeset
797 }
1687
4d80fc990dae refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1686
diff changeset
798 }
35
f6d12037f886 full json vs. simplified json
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2
diff changeset
799
1687
4d80fc990dae refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1686
diff changeset
800
2126
03b065778fc3 cleaning up
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2125
diff changeset
801 void FromDcmtkBridge::ElementToJson(Json::Value& parent,
03b065778fc3 cleaning up
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2125
diff changeset
802 DcmElement& element,
03b065778fc3 cleaning up
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2125
diff changeset
803 DicomToJsonFormat format,
03b065778fc3 cleaning up
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2125
diff changeset
804 DicomToJsonFlags flags,
03b065778fc3 cleaning up
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2125
diff changeset
805 unsigned int maxStringLength,
03b065778fc3 cleaning up
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2125
diff changeset
806 Encoding encoding)
1687
4d80fc990dae refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1686
diff changeset
807 {
1691
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1690
diff changeset
808 if (parent.type() == Json::nullValue)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1690
diff changeset
809 {
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1690
diff changeset
810 parent = Json::objectValue;
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1690
diff changeset
811 }
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1690
diff changeset
812
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1690
diff changeset
813 assert(parent.type() == Json::objectValue);
1687
4d80fc990dae refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1686
diff changeset
814 Json::Value& target = PrepareNode(parent, element, format);
4d80fc990dae refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1686
diff changeset
815
4d80fc990dae refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1686
diff changeset
816 if (element.isLeaf())
4d80fc990dae refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1686
diff changeset
817 {
2129
0c09d1af22f3 "/tools/invalidate-tags" to invalidate the JSON summary of all the DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2126
diff changeset
818 // The "0" below lets "LeafValueToJson()" take care of "TooLong" values
0c09d1af22f3 "/tools/invalidate-tags" to invalidate the JSON summary of all the DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2126
diff changeset
819 std::auto_ptr<DicomValue> v(FromDcmtkBridge::ConvertLeafElement(element, flags, 0, encoding));
1738
15a788a63846 DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1737
diff changeset
820 LeafValueToJson(target, *v, format, flags, maxStringLength);
0
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
821 }
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
822 else
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
823 {
1688
27d70e9ee2e4 DicomToJsonFormat enumeration
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1687
diff changeset
824 assert(target.type() == Json::nullValue);
27d70e9ee2e4 DicomToJsonFormat enumeration
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1687
diff changeset
825 target = Json::arrayValue;
0
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
826
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
827 // "All subclasses of DcmElement except for DcmSequenceOfItems
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
828 // are leaf nodes, while DcmSequenceOfItems, DcmItem, DcmDataset
1687
4d80fc990dae refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1686
diff changeset
829 // etc. are not." The following dynamic_cast is thus OK.
0
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
830 DcmSequenceOfItems& sequence = dynamic_cast<DcmSequenceOfItems&>(element);
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
831
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
832 for (unsigned long i = 0; i < sequence.card(); i++)
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
833 {
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
834 DcmItem* child = sequence.getItem(i);
1687
4d80fc990dae refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1686
diff changeset
835 Json::Value& v = target.append(Json::objectValue);
1735
a001f6226c7c primitives for flags in dicom-to-json conversions
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1695
diff changeset
836 DatasetToJson(v, *child, format, flags, maxStringLength, encoding);
1687
4d80fc990dae refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1686
diff changeset
837 }
0
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
838 }
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
839 }
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
840
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
841
2126
03b065778fc3 cleaning up
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2125
diff changeset
842 void FromDcmtkBridge::DatasetToJson(Json::Value& parent,
03b065778fc3 cleaning up
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2125
diff changeset
843 DcmItem& item,
03b065778fc3 cleaning up
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2125
diff changeset
844 DicomToJsonFormat format,
03b065778fc3 cleaning up
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2125
diff changeset
845 DicomToJsonFlags flags,
03b065778fc3 cleaning up
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2125
diff changeset
846 unsigned int maxStringLength,
03b065778fc3 cleaning up
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2125
diff changeset
847 Encoding encoding)
1686
14a32b2fa63e refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1657
diff changeset
848 {
1688
27d70e9ee2e4 DicomToJsonFormat enumeration
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1687
diff changeset
849 assert(parent.type() == Json::objectValue);
1686
14a32b2fa63e refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1657
diff changeset
850
14a32b2fa63e refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1657
diff changeset
851 for (unsigned long i = 0; i < item.card(); i++)
14a32b2fa63e refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1657
diff changeset
852 {
14a32b2fa63e refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1657
diff changeset
853 DcmElement* element = item.getElement(i);
1735
a001f6226c7c primitives for flags in dicom-to-json conversions
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1695
diff changeset
854 if (element == NULL)
a001f6226c7c primitives for flags in dicom-to-json conversions
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1695
diff changeset
855 {
a001f6226c7c primitives for flags in dicom-to-json conversions
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1695
diff changeset
856 throw OrthancException(ErrorCode_InternalError);
a001f6226c7c primitives for flags in dicom-to-json conversions
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1695
diff changeset
857 }
a001f6226c7c primitives for flags in dicom-to-json conversions
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1695
diff changeset
858
1818
1065401501fb ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1792
diff changeset
859 DicomTag tag(FromDcmtkBridge::Convert(element->getTag()));
1065401501fb ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1792
diff changeset
860
1065401501fb ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1792
diff changeset
861 /*element->getTag().isPrivate()*/
1065401501fb ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1792
diff changeset
862 if (tag.IsPrivate() &&
1065401501fb ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1792
diff changeset
863 !(flags & DicomToJsonFlags_IncludePrivateTags))
1736
b953c6eef28d ToJson: IncludePrivateTags and IncludeUnknownTags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1735
diff changeset
864 {
b953c6eef28d ToJson: IncludePrivateTags and IncludeUnknownTags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1735
diff changeset
865 continue;
b953c6eef28d ToJson: IncludePrivateTags and IncludeUnknownTags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1735
diff changeset
866 }
b953c6eef28d ToJson: IncludePrivateTags and IncludeUnknownTags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1735
diff changeset
867
b953c6eef28d ToJson: IncludePrivateTags and IncludeUnknownTags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1735
diff changeset
868 if (!(flags & DicomToJsonFlags_IncludeUnknownTags))
1735
a001f6226c7c primitives for flags in dicom-to-json conversions
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1695
diff changeset
869 {
1736
b953c6eef28d ToJson: IncludePrivateTags and IncludeUnknownTags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1735
diff changeset
870 DictionaryLocker locker;
b953c6eef28d ToJson: IncludePrivateTags and IncludeUnknownTags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1735
diff changeset
871 if (locker->findEntry(element->getTag(), NULL) == NULL)
b953c6eef28d ToJson: IncludePrivateTags and IncludeUnknownTags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1735
diff changeset
872 {
b953c6eef28d ToJson: IncludePrivateTags and IncludeUnknownTags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1735
diff changeset
873 continue;
b953c6eef28d ToJson: IncludePrivateTags and IncludeUnknownTags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1735
diff changeset
874 }
1735
a001f6226c7c primitives for flags in dicom-to-json conversions
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1695
diff changeset
875 }
1736
b953c6eef28d ToJson: IncludePrivateTags and IncludeUnknownTags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1735
diff changeset
876
1739
df331354cea2 include binary in ToJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1738
diff changeset
877 DcmEVR evr = element->getTag().getEVR();
df331354cea2 include binary in ToJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1738
diff changeset
878 if (evr == EVR_OB ||
df331354cea2 include binary in ToJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1738
diff changeset
879 evr == EVR_OF ||
df331354cea2 include binary in ToJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1738
diff changeset
880 evr == EVR_OW ||
df331354cea2 include binary in ToJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1738
diff changeset
881 evr == EVR_UN ||
df331354cea2 include binary in ToJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1738
diff changeset
882 evr == EVR_ox)
df331354cea2 include binary in ToJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1738
diff changeset
883 {
df331354cea2 include binary in ToJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1738
diff changeset
884 // This is a binary tag
df331354cea2 include binary in ToJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1738
diff changeset
885 if ((tag == DICOM_TAG_PIXEL_DATA && !(flags & DicomToJsonFlags_IncludePixelData)) ||
df331354cea2 include binary in ToJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1738
diff changeset
886 (tag != DICOM_TAG_PIXEL_DATA && !(flags & DicomToJsonFlags_IncludeBinary)))
df331354cea2 include binary in ToJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1738
diff changeset
887 {
df331354cea2 include binary in ToJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1738
diff changeset
888 continue;
df331354cea2 include binary in ToJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1738
diff changeset
889 }
df331354cea2 include binary in ToJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1738
diff changeset
890 }
df331354cea2 include binary in ToJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1738
diff changeset
891
2126
03b065778fc3 cleaning up
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2125
diff changeset
892 FromDcmtkBridge::ElementToJson(parent, *element, format, flags, maxStringLength, encoding);
1686
14a32b2fa63e refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1657
diff changeset
893 }
14a32b2fa63e refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1657
diff changeset
894 }
14a32b2fa63e refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1657
diff changeset
895
14a32b2fa63e refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1657
diff changeset
896
2126
03b065778fc3 cleaning up
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2125
diff changeset
897 void FromDcmtkBridge::ExtractDicomAsJson(Json::Value& target,
03b065778fc3 cleaning up
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2125
diff changeset
898 DcmDataset& dataset,
03b065778fc3 cleaning up
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2125
diff changeset
899 DicomToJsonFormat format,
03b065778fc3 cleaning up
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2125
diff changeset
900 DicomToJsonFlags flags,
2131
bb199bccdc45 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2129
diff changeset
901 unsigned int maxStringLength,
bb199bccdc45 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2129
diff changeset
902 Encoding defaultEncoding)
0
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
903 {
2131
bb199bccdc45 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2129
diff changeset
904 Encoding encoding = DetectEncoding(dataset, defaultEncoding);
2126
03b065778fc3 cleaning up
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2125
diff changeset
905
1688
27d70e9ee2e4 DicomToJsonFormat enumeration
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1687
diff changeset
906 target = Json::objectValue;
2126
03b065778fc3 cleaning up
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2125
diff changeset
907 DatasetToJson(target, dataset, format, flags, maxStringLength, encoding);
0
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
908 }
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
909
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
910
2126
03b065778fc3 cleaning up
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2125
diff changeset
911 void FromDcmtkBridge::ExtractHeaderAsJson(Json::Value& target,
03b065778fc3 cleaning up
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2125
diff changeset
912 DcmMetaInfo& dataset,
03b065778fc3 cleaning up
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2125
diff changeset
913 DicomToJsonFormat format,
03b065778fc3 cleaning up
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2125
diff changeset
914 DicomToJsonFlags flags,
03b065778fc3 cleaning up
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2125
diff changeset
915 unsigned int maxStringLength)
1831
3ae2ff249675 "/instances/.../header" to get the meta information (header) of the DICOM instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1818
diff changeset
916 {
3ae2ff249675 "/instances/.../header" to get the meta information (header) of the DICOM instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1818
diff changeset
917 target = Json::objectValue;
3ae2ff249675 "/instances/.../header" to get the meta information (header) of the DICOM instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1818
diff changeset
918 DatasetToJson(target, dataset, format, flags, maxStringLength, Encoding_Ascii);
3ae2ff249675 "/instances/.../header" to get the meta information (header) of the DICOM instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1818
diff changeset
919 }
3ae2ff249675 "/instances/.../header" to get the meta information (header) of the DICOM instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1818
diff changeset
920
3ae2ff249675 "/instances/.../header" to get the meta information (header) of the DICOM instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1818
diff changeset
921
2115
a657f7772e69 Handling of private tags/creators in the "Dictionary" configuration option
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2076
diff changeset
922
a657f7772e69 Handling of private tags/creators in the "Dictionary" configuration option
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2076
diff changeset
923 static std::string GetTagNameInternal(DcmTag& tag)
0
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
924 {
291
4d7469f72a0b embedding of dicom dictionaries
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 285
diff changeset
925 {
2115
a657f7772e69 Handling of private tags/creators in the "Dictionary" configuration option
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2076
diff changeset
926 // Some patches for important tags because of different DICOM
a657f7772e69 Handling of private tags/creators in the "Dictionary" configuration option
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2076
diff changeset
927 // dictionaries between DCMTK versions
a657f7772e69 Handling of private tags/creators in the "Dictionary" configuration option
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2076
diff changeset
928 DicomTag tmp(tag.getGroup(), tag.getElement());
a657f7772e69 Handling of private tags/creators in the "Dictionary" configuration option
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2076
diff changeset
929 std::string n = tmp.GetMainTagsName();
a657f7772e69 Handling of private tags/creators in the "Dictionary" configuration option
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2076
diff changeset
930 if (n.size() != 0)
a657f7772e69 Handling of private tags/creators in the "Dictionary" configuration option
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2076
diff changeset
931 {
a657f7772e69 Handling of private tags/creators in the "Dictionary" configuration option
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2076
diff changeset
932 return n;
a657f7772e69 Handling of private tags/creators in the "Dictionary" configuration option
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2076
diff changeset
933 }
a657f7772e69 Handling of private tags/creators in the "Dictionary" configuration option
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2076
diff changeset
934 // End of patches
291
4d7469f72a0b embedding of dicom dictionaries
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 285
diff changeset
935 }
106
332fec038d52 patch for dcmtk dictionaries
jodogne
parents: 80
diff changeset
936
305
86bb79522f19 name of the private tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 304
diff changeset
937 #if 0
2115
a657f7772e69 Handling of private tags/creators in the "Dictionary" configuration option
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2076
diff changeset
938 // This version explicitly calls the dictionary
0
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
939 const DcmDataDictionary& dict = dcmDataDict.rdlock();
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
940 const DcmDictEntry* entry = dict.findEntry(tag, NULL);
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
941
306
326d5a4a5af3 modification of instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 305
diff changeset
942 std::string s(DcmTag_ERROR_TagName);
0
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
943 if (entry != NULL)
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
944 {
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
945 s = std::string(entry->getTagName());
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
946 }
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
947
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
948 dcmDataDict.unlock();
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
949 return s;
305
86bb79522f19 name of the private tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 304
diff changeset
950 #else
86bb79522f19 name of the private tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 304
diff changeset
951 const char* name = tag.getTagName();
86bb79522f19 name of the private tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 304
diff changeset
952 if (name == NULL)
86bb79522f19 name of the private tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 304
diff changeset
953 {
306
326d5a4a5af3 modification of instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 305
diff changeset
954 return DcmTag_ERROR_TagName;
305
86bb79522f19 name of the private tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 304
diff changeset
955 }
86bb79522f19 name of the private tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 304
diff changeset
956 else
86bb79522f19 name of the private tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 304
diff changeset
957 {
86bb79522f19 name of the private tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 304
diff changeset
958 return std::string(name);
86bb79522f19 name of the private tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 304
diff changeset
959 }
86bb79522f19 name of the private tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 304
diff changeset
960 #endif
0
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
961 }
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
962
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
963
2115
a657f7772e69 Handling of private tags/creators in the "Dictionary" configuration option
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2076
diff changeset
964 std::string FromDcmtkBridge::GetTagName(const DicomTag& t,
a657f7772e69 Handling of private tags/creators in the "Dictionary" configuration option
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2076
diff changeset
965 const std::string& privateCreator)
a657f7772e69 Handling of private tags/creators in the "Dictionary" configuration option
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2076
diff changeset
966 {
a657f7772e69 Handling of private tags/creators in the "Dictionary" configuration option
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2076
diff changeset
967 DcmTag tag(t.GetGroup(), t.GetElement());
a657f7772e69 Handling of private tags/creators in the "Dictionary" configuration option
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2076
diff changeset
968
a657f7772e69 Handling of private tags/creators in the "Dictionary" configuration option
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2076
diff changeset
969 if (!privateCreator.empty())
a657f7772e69 Handling of private tags/creators in the "Dictionary" configuration option
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2076
diff changeset
970 {
a657f7772e69 Handling of private tags/creators in the "Dictionary" configuration option
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2076
diff changeset
971 tag.setPrivateCreator(privateCreator.c_str());
a657f7772e69 Handling of private tags/creators in the "Dictionary" configuration option
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2076
diff changeset
972 }
a657f7772e69 Handling of private tags/creators in the "Dictionary" configuration option
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2076
diff changeset
973
a657f7772e69 Handling of private tags/creators in the "Dictionary" configuration option
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2076
diff changeset
974 return GetTagNameInternal(tag);
a657f7772e69 Handling of private tags/creators in the "Dictionary" configuration option
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2076
diff changeset
975 }
a657f7772e69 Handling of private tags/creators in the "Dictionary" configuration option
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2076
diff changeset
976
a657f7772e69 Handling of private tags/creators in the "Dictionary" configuration option
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2076
diff changeset
977
a657f7772e69 Handling of private tags/creators in the "Dictionary" configuration option
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2076
diff changeset
978 std::string FromDcmtkBridge::GetTagName(const DcmElement& element)
a657f7772e69 Handling of private tags/creators in the "Dictionary" configuration option
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2076
diff changeset
979 {
a657f7772e69 Handling of private tags/creators in the "Dictionary" configuration option
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2076
diff changeset
980 // Copy the tag to ensure const-correctness of DcmElement. Note
a657f7772e69 Handling of private tags/creators in the "Dictionary" configuration option
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2076
diff changeset
981 // that the private creator information is also copied.
a657f7772e69 Handling of private tags/creators in the "Dictionary" configuration option
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2076
diff changeset
982 DcmTag tag(element.getTag());
a657f7772e69 Handling of private tags/creators in the "Dictionary" configuration option
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2076
diff changeset
983
a657f7772e69 Handling of private tags/creators in the "Dictionary" configuration option
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2076
diff changeset
984 return GetTagNameInternal(tag);
a657f7772e69 Handling of private tags/creators in the "Dictionary" configuration option
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2076
diff changeset
985 }
a657f7772e69 Handling of private tags/creators in the "Dictionary" configuration option
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2076
diff changeset
986
a657f7772e69 Handling of private tags/creators in the "Dictionary" configuration option
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2076
diff changeset
987
a657f7772e69 Handling of private tags/creators in the "Dictionary" configuration option
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2076
diff changeset
988
304
4eea080e6e7a refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 303
diff changeset
989 DicomTag FromDcmtkBridge::ParseTag(const char* name)
0
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
990 {
304
4eea080e6e7a refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 303
diff changeset
991 if (strlen(name) == 9 &&
4eea080e6e7a refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 303
diff changeset
992 isxdigit(name[0]) &&
4eea080e6e7a refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 303
diff changeset
993 isxdigit(name[1]) &&
4eea080e6e7a refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 303
diff changeset
994 isxdigit(name[2]) &&
4eea080e6e7a refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 303
diff changeset
995 isxdigit(name[3]) &&
991
2f76b92addd4 keep private tags during anonymization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 957
diff changeset
996 (name[4] == '-' || name[4] == ',') &&
304
4eea080e6e7a refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 303
diff changeset
997 isxdigit(name[5]) &&
4eea080e6e7a refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 303
diff changeset
998 isxdigit(name[6]) &&
4eea080e6e7a refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 303
diff changeset
999 isxdigit(name[7]) &&
4eea080e6e7a refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 303
diff changeset
1000 isxdigit(name[8]))
4eea080e6e7a refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 303
diff changeset
1001 {
4eea080e6e7a refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 303
diff changeset
1002 uint16_t group = GetTagValue(name);
4eea080e6e7a refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 303
diff changeset
1003 uint16_t element = GetTagValue(name + 5);
4eea080e6e7a refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 303
diff changeset
1004 return DicomTag(group, element);
4eea080e6e7a refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 303
diff changeset
1005 }
4eea080e6e7a refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 303
diff changeset
1006
1861
a7bea843a7bc "OrthancPluginLookupDictionary()" to get information about some DICOM tag
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1860
diff changeset
1007 if (strlen(name) == 8 &&
a7bea843a7bc "OrthancPluginLookupDictionary()" to get information about some DICOM tag
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1860
diff changeset
1008 isxdigit(name[0]) &&
a7bea843a7bc "OrthancPluginLookupDictionary()" to get information about some DICOM tag
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1860
diff changeset
1009 isxdigit(name[1]) &&
a7bea843a7bc "OrthancPluginLookupDictionary()" to get information about some DICOM tag
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1860
diff changeset
1010 isxdigit(name[2]) &&
a7bea843a7bc "OrthancPluginLookupDictionary()" to get information about some DICOM tag
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1860
diff changeset
1011 isxdigit(name[3]) &&
a7bea843a7bc "OrthancPluginLookupDictionary()" to get information about some DICOM tag
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1860
diff changeset
1012 isxdigit(name[4]) &&
a7bea843a7bc "OrthancPluginLookupDictionary()" to get information about some DICOM tag
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1860
diff changeset
1013 isxdigit(name[5]) &&
a7bea843a7bc "OrthancPluginLookupDictionary()" to get information about some DICOM tag
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1860
diff changeset
1014 isxdigit(name[6]) &&
a7bea843a7bc "OrthancPluginLookupDictionary()" to get information about some DICOM tag
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1860
diff changeset
1015 isxdigit(name[7]))
a7bea843a7bc "OrthancPluginLookupDictionary()" to get information about some DICOM tag
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1860
diff changeset
1016 {
a7bea843a7bc "OrthancPluginLookupDictionary()" to get information about some DICOM tag
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1860
diff changeset
1017 uint16_t group = GetTagValue(name);
a7bea843a7bc "OrthancPluginLookupDictionary()" to get information about some DICOM tag
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1860
diff changeset
1018 uint16_t element = GetTagValue(name + 4);
a7bea843a7bc "OrthancPluginLookupDictionary()" to get information about some DICOM tag
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1860
diff changeset
1019 return DicomTag(group, element);
a7bea843a7bc "OrthancPluginLookupDictionary()" to get information about some DICOM tag
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1860
diff changeset
1020 }
a7bea843a7bc "OrthancPluginLookupDictionary()" to get information about some DICOM tag
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1860
diff changeset
1021
305
86bb79522f19 name of the private tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 304
diff changeset
1022 #if 0
0
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1023 const DcmDataDictionary& dict = dcmDataDict.rdlock();
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1024 const DcmDictEntry* entry = dict.findEntry(name);
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1025
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1026 if (entry == NULL)
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1027 {
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1028 dcmDataDict.unlock();
1582
bd1889029cbb encoding of exceptions
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1557
diff changeset
1029 throw OrthancException(ErrorCode_UnknownDicomTag);
0
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1030 }
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1031 else
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1032 {
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1033 DcmTagKey key = entry->getKey();
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1034 DicomTag tag(key.getGroup(), key.getElement());
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1035 dcmDataDict.unlock();
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1036 return tag;
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1037 }
305
86bb79522f19 name of the private tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 304
diff changeset
1038 #else
86bb79522f19 name of the private tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 304
diff changeset
1039 DcmTag tag;
86bb79522f19 name of the private tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 304
diff changeset
1040 if (DcmTag::findTagFromName(name, tag).good())
86bb79522f19 name of the private tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 304
diff changeset
1041 {
86bb79522f19 name of the private tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 304
diff changeset
1042 return DicomTag(tag.getGTag(), tag.getETag());
86bb79522f19 name of the private tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 304
diff changeset
1043 }
86bb79522f19 name of the private tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 304
diff changeset
1044 else
86bb79522f19 name of the private tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 304
diff changeset
1045 {
1582
bd1889029cbb encoding of exceptions
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1557
diff changeset
1046 throw OrthancException(ErrorCode_UnknownDicomTag);
305
86bb79522f19 name of the private tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 304
diff changeset
1047 }
86bb79522f19 name of the private tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 304
diff changeset
1048 #endif
0
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1049 }
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1050
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1051
1655
e40fd0d925c5 /tools/create-dicom can create tags with unknown VR
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1612
diff changeset
1052 bool FromDcmtkBridge::IsUnknownTag(const DicomTag& tag)
e40fd0d925c5 /tools/create-dicom can create tags with unknown VR
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1612
diff changeset
1053 {
e40fd0d925c5 /tools/create-dicom can create tags with unknown VR
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1612
diff changeset
1054 DcmTag tmp(tag.GetGroup(), tag.GetElement());
e40fd0d925c5 /tools/create-dicom can create tags with unknown VR
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1612
diff changeset
1055 return tmp.isUnknownVR();
e40fd0d925c5 /tools/create-dicom can create tags with unknown VR
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1612
diff changeset
1056 }
e40fd0d925c5 /tools/create-dicom can create tags with unknown VR
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1612
diff changeset
1057
e40fd0d925c5 /tools/create-dicom can create tags with unknown VR
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1612
diff changeset
1058
0
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1059 void FromDcmtkBridge::ToJson(Json::Value& result,
1368
b22ba8c5edbe query retrieve
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1360
diff changeset
1060 const DicomMap& values,
b22ba8c5edbe query retrieve
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1360
diff changeset
1061 bool simplify)
0
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1062 {
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1063 if (result.type() != Json::objectValue)
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1064 {
62
a70bb32802ae renaming Server
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 57
diff changeset
1065 throw OrthancException(ErrorCode_BadParameterType);
0
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1066 }
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1067
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1068 result.clear();
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1069
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1070 for (DicomMap::Map::const_iterator
656
08eca5d86aad fixes to cppcheck
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 465
diff changeset
1071 it = values.map_.begin(); it != values.map_.end(); ++it)
0
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1072 {
2115
a657f7772e69 Handling of private tags/creators in the "Dictionary" configuration option
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2076
diff changeset
1073 // TODO Inject PrivateCreator if some is available in the DicomMap?
a657f7772e69 Handling of private tags/creators in the "Dictionary" configuration option
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2076
diff changeset
1074 const std::string tagName = GetTagName(it->first, "");
a657f7772e69 Handling of private tags/creators in the "Dictionary" configuration option
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2076
diff changeset
1075
1368
b22ba8c5edbe query retrieve
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1360
diff changeset
1076 if (simplify)
b22ba8c5edbe query retrieve
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1360
diff changeset
1077 {
1737
ec66a16aa398 removal of DicomStringValue and DicomNullValue
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1736
diff changeset
1078 if (it->second->IsNull())
ec66a16aa398 removal of DicomStringValue and DicomNullValue
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1736
diff changeset
1079 {
2115
a657f7772e69 Handling of private tags/creators in the "Dictionary" configuration option
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2076
diff changeset
1080 result[tagName] = Json::nullValue;
1737
ec66a16aa398 removal of DicomStringValue and DicomNullValue
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1736
diff changeset
1081 }
ec66a16aa398 removal of DicomStringValue and DicomNullValue
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1736
diff changeset
1082 else
ec66a16aa398 removal of DicomStringValue and DicomNullValue
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1736
diff changeset
1083 {
ec66a16aa398 removal of DicomStringValue and DicomNullValue
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1736
diff changeset
1084 // TODO IsBinary
2115
a657f7772e69 Handling of private tags/creators in the "Dictionary" configuration option
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2076
diff changeset
1085 result[tagName] = it->second->GetContent();
1737
ec66a16aa398 removal of DicomStringValue and DicomNullValue
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1736
diff changeset
1086 }
1368
b22ba8c5edbe query retrieve
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1360
diff changeset
1087 }
b22ba8c5edbe query retrieve
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1360
diff changeset
1088 else
b22ba8c5edbe query retrieve
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1360
diff changeset
1089 {
b22ba8c5edbe query retrieve
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1360
diff changeset
1090 Json::Value value = Json::objectValue;
b22ba8c5edbe query retrieve
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1360
diff changeset
1091
2115
a657f7772e69 Handling of private tags/creators in the "Dictionary" configuration option
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2076
diff changeset
1092 value["Name"] = tagName;
1368
b22ba8c5edbe query retrieve
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1360
diff changeset
1093
b22ba8c5edbe query retrieve
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1360
diff changeset
1094 if (it->second->IsNull())
b22ba8c5edbe query retrieve
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1360
diff changeset
1095 {
b22ba8c5edbe query retrieve
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1360
diff changeset
1096 value["Type"] = "Null";
b22ba8c5edbe query retrieve
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1360
diff changeset
1097 value["Value"] = Json::nullValue;
b22ba8c5edbe query retrieve
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1360
diff changeset
1098 }
b22ba8c5edbe query retrieve
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1360
diff changeset
1099 else
b22ba8c5edbe query retrieve
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1360
diff changeset
1100 {
1737
ec66a16aa398 removal of DicomStringValue and DicomNullValue
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1736
diff changeset
1101 // TODO IsBinary
1368
b22ba8c5edbe query retrieve
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1360
diff changeset
1102 value["Type"] = "String";
1737
ec66a16aa398 removal of DicomStringValue and DicomNullValue
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1736
diff changeset
1103 value["Value"] = it->second->GetContent();
1368
b22ba8c5edbe query retrieve
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1360
diff changeset
1104 }
b22ba8c5edbe query retrieve
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1360
diff changeset
1105
b22ba8c5edbe query retrieve
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1360
diff changeset
1106 result[it->first.Format()] = value;
b22ba8c5edbe query retrieve
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1360
diff changeset
1107 }
0
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1108 }
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1109 }
176
81f11fb357f2 uid generation
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 136
diff changeset
1110
81f11fb357f2 uid generation
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 136
diff changeset
1111
788
7ebe4bf87196 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 784
diff changeset
1112 std::string FromDcmtkBridge::GenerateUniqueIdentifier(ResourceType level)
176
81f11fb357f2 uid generation
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 136
diff changeset
1113 {
81f11fb357f2 uid generation
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 136
diff changeset
1114 char uid[100];
81f11fb357f2 uid generation
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 136
diff changeset
1115
81f11fb357f2 uid generation
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 136
diff changeset
1116 switch (level)
81f11fb357f2 uid generation
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 136
diff changeset
1117 {
788
7ebe4bf87196 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 784
diff changeset
1118 case ResourceType_Patient:
311
26efccdff583 anonymisation
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 308
diff changeset
1119 // The "PatientID" field is of type LO (Long String), 64
26efccdff583 anonymisation
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 308
diff changeset
1120 // Bytes Maximum. An UUID is of length 36, thus it can be used
26efccdff583 anonymisation
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 308
diff changeset
1121 // as a random PatientID.
26efccdff583 anonymisation
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 308
diff changeset
1122 return Toolbox::GenerateUuid();
306
326d5a4a5af3 modification of instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 305
diff changeset
1123
788
7ebe4bf87196 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 784
diff changeset
1124 case ResourceType_Instance:
302
238134081136 modification of dicom files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 291
diff changeset
1125 return dcmGenerateUniqueIdentifier(uid, SITE_INSTANCE_UID_ROOT);
176
81f11fb357f2 uid generation
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 136
diff changeset
1126
788
7ebe4bf87196 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 784
diff changeset
1127 case ResourceType_Series:
302
238134081136 modification of dicom files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 291
diff changeset
1128 return dcmGenerateUniqueIdentifier(uid, SITE_SERIES_UID_ROOT);
176
81f11fb357f2 uid generation
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 136
diff changeset
1129
788
7ebe4bf87196 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 784
diff changeset
1130 case ResourceType_Study:
302
238134081136 modification of dicom files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 291
diff changeset
1131 return dcmGenerateUniqueIdentifier(uid, SITE_STUDY_UID_ROOT);
176
81f11fb357f2 uid generation
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 136
diff changeset
1132
302
238134081136 modification of dicom files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 291
diff changeset
1133 default:
238134081136 modification of dicom files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 291
diff changeset
1134 throw OrthancException(ErrorCode_ParameterOutOfRange);
176
81f11fb357f2 uid generation
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 136
diff changeset
1135 }
81f11fb357f2 uid generation
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 136
diff changeset
1136 }
81f11fb357f2 uid generation
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 136
diff changeset
1137
291
4d7469f72a0b embedding of dicom dictionaries
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 285
diff changeset
1138 bool FromDcmtkBridge::SaveToMemoryBuffer(std::string& buffer,
1004
a226e0959d8b DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 991
diff changeset
1139 DcmDataset& dataSet)
291
4d7469f72a0b embedding of dicom dictionaries
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 285
diff changeset
1140 {
4d7469f72a0b embedding of dicom dictionaries
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 285
diff changeset
1141 // Determine the transfer syntax which shall be used to write the
4d7469f72a0b embedding of dicom dictionaries
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 285
diff changeset
1142 // information to the file. We always switch to the Little Endian
4d7469f72a0b embedding of dicom dictionaries
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 285
diff changeset
1143 // syntax, with explicit length.
4d7469f72a0b embedding of dicom dictionaries
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 285
diff changeset
1144
4d7469f72a0b embedding of dicom dictionaries
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 285
diff changeset
1145 // http://support.dcmtk.org/docs/dcxfer_8h-source.html
661
d233b5090105 accept more transfer syntaxes for C-Store SCP, write meta-header when receiving files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 656
diff changeset
1146
d233b5090105 accept more transfer syntaxes for C-Store SCP, write meta-header when receiving files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 656
diff changeset
1147
d233b5090105 accept more transfer syntaxes for C-Store SCP, write meta-header when receiving files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 656
diff changeset
1148 /**
d233b5090105 accept more transfer syntaxes for C-Store SCP, write meta-header when receiving files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 656
diff changeset
1149 * Note that up to Orthanc 0.7.1 (inclusive), the
d233b5090105 accept more transfer syntaxes for C-Store SCP, write meta-header when receiving files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 656
diff changeset
1150 * "EXS_LittleEndianExplicit" was always used to save the DICOM
d233b5090105 accept more transfer syntaxes for C-Store SCP, write meta-header when receiving files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 656
diff changeset
1151 * dataset into memory. We now keep the original transfer syntax
d233b5090105 accept more transfer syntaxes for C-Store SCP, write meta-header when receiving files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 656
diff changeset
1152 * (if available).
d233b5090105 accept more transfer syntaxes for C-Store SCP, write meta-header when receiving files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 656
diff changeset
1153 **/
1004
a226e0959d8b DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 991
diff changeset
1154 E_TransferSyntax xfer = dataSet.getOriginalXfer();
661
d233b5090105 accept more transfer syntaxes for C-Store SCP, write meta-header when receiving files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 656
diff changeset
1155 if (xfer == EXS_Unknown)
d233b5090105 accept more transfer syntaxes for C-Store SCP, write meta-header when receiving files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 656
diff changeset
1156 {
d233b5090105 accept more transfer syntaxes for C-Store SCP, write meta-header when receiving files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 656
diff changeset
1157 // No information about the original transfer syntax: This is
d233b5090105 accept more transfer syntaxes for C-Store SCP, write meta-header when receiving files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 656
diff changeset
1158 // most probably a DICOM dataset that was read from memory.
d233b5090105 accept more transfer syntaxes for C-Store SCP, write meta-header when receiving files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 656
diff changeset
1159 xfer = EXS_LittleEndianExplicit;
d233b5090105 accept more transfer syntaxes for C-Store SCP, write meta-header when receiving files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 656
diff changeset
1160 }
d233b5090105 accept more transfer syntaxes for C-Store SCP, write meta-header when receiving files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 656
diff changeset
1161
291
4d7469f72a0b embedding of dicom dictionaries
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 285
diff changeset
1162 E_EncodingType encodingType = /*opt_sequenceType*/ EET_ExplicitLength;
4d7469f72a0b embedding of dicom dictionaries
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 285
diff changeset
1163
661
d233b5090105 accept more transfer syntaxes for C-Store SCP, write meta-header when receiving files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 656
diff changeset
1164 // Create the meta-header information
1004
a226e0959d8b DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 991
diff changeset
1165 DcmFileFormat ff(&dataSet);
661
d233b5090105 accept more transfer syntaxes for C-Store SCP, write meta-header when receiving files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 656
diff changeset
1166 ff.validateMetaInfo(xfer);
1316
1c8dfedefefe Fix anonymization generating non-portable DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1307
diff changeset
1167 ff.removeInvalidGroups();
291
4d7469f72a0b embedding of dicom dictionaries
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 285
diff changeset
1168
661
d233b5090105 accept more transfer syntaxes for C-Store SCP, write meta-header when receiving files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 656
diff changeset
1169 // Create a memory buffer with the proper size
1876
9b458e4484a1 truncation of serialized DICOM buffers if calcElementLength was overestimated
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1861
diff changeset
1170 {
9b458e4484a1 truncation of serialized DICOM buffers if calcElementLength was overestimated
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1861
diff changeset
1171 const uint32_t estimatedSize = ff.calcElementLength(xfer, encodingType); // (*)
9b458e4484a1 truncation of serialized DICOM buffers if calcElementLength was overestimated
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1861
diff changeset
1172 buffer.resize(estimatedSize);
9b458e4484a1 truncation of serialized DICOM buffers if calcElementLength was overestimated
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1861
diff changeset
1173 }
9b458e4484a1 truncation of serialized DICOM buffers if calcElementLength was overestimated
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1861
diff changeset
1174
9b458e4484a1 truncation of serialized DICOM buffers if calcElementLength was overestimated
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1861
diff changeset
1175 DcmOutputBufferStream ob(&buffer[0], buffer.size());
291
4d7469f72a0b embedding of dicom dictionaries
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 285
diff changeset
1176
661
d233b5090105 accept more transfer syntaxes for C-Store SCP, write meta-header when receiving files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 656
diff changeset
1177 // Fill the memory buffer with the meta-header and the dataset
d233b5090105 accept more transfer syntaxes for C-Store SCP, write meta-header when receiving files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 656
diff changeset
1178 ff.transferInit();
d233b5090105 accept more transfer syntaxes for C-Store SCP, write meta-header when receiving files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 656
diff changeset
1179 OFCondition c = ff.write(ob, xfer, encodingType, NULL,
d233b5090105 accept more transfer syntaxes for C-Store SCP, write meta-header when receiving files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 656
diff changeset
1180 /*opt_groupLength*/ EGL_recalcGL,
d233b5090105 accept more transfer syntaxes for C-Store SCP, write meta-header when receiving files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 656
diff changeset
1181 /*opt_paddingType*/ EPD_withoutPadding);
d233b5090105 accept more transfer syntaxes for C-Store SCP, write meta-header when receiving files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 656
diff changeset
1182 ff.transferEnd();
291
4d7469f72a0b embedding of dicom dictionaries
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 285
diff changeset
1183
4d7469f72a0b embedding of dicom dictionaries
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 285
diff changeset
1184 if (c.good())
4d7469f72a0b embedding of dicom dictionaries
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 285
diff changeset
1185 {
1876
9b458e4484a1 truncation of serialized DICOM buffers if calcElementLength was overestimated
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1861
diff changeset
1186 // The DICOM file is successfully written, truncate the target
9b458e4484a1 truncation of serialized DICOM buffers if calcElementLength was overestimated
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1861
diff changeset
1187 // buffer if its size was overestimated by (*)
9b458e4484a1 truncation of serialized DICOM buffers if calcElementLength was overestimated
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1861
diff changeset
1188 ob.flush();
9b458e4484a1 truncation of serialized DICOM buffers if calcElementLength was overestimated
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1861
diff changeset
1189
9b458e4484a1 truncation of serialized DICOM buffers if calcElementLength was overestimated
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1861
diff changeset
1190 size_t effectiveSize = static_cast<size_t>(ob.tell());
9b458e4484a1 truncation of serialized DICOM buffers if calcElementLength was overestimated
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1861
diff changeset
1191 if (effectiveSize < buffer.size())
9b458e4484a1 truncation of serialized DICOM buffers if calcElementLength was overestimated
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1861
diff changeset
1192 {
9b458e4484a1 truncation of serialized DICOM buffers if calcElementLength was overestimated
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1861
diff changeset
1193 buffer.resize(effectiveSize);
9b458e4484a1 truncation of serialized DICOM buffers if calcElementLength was overestimated
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1861
diff changeset
1194 }
9b458e4484a1 truncation of serialized DICOM buffers if calcElementLength was overestimated
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1861
diff changeset
1195
291
4d7469f72a0b embedding of dicom dictionaries
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 285
diff changeset
1196 return true;
4d7469f72a0b embedding of dicom dictionaries
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 285
diff changeset
1197 }
4d7469f72a0b embedding of dicom dictionaries
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 285
diff changeset
1198 else
4d7469f72a0b embedding of dicom dictionaries
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 285
diff changeset
1199 {
1876
9b458e4484a1 truncation of serialized DICOM buffers if calcElementLength was overestimated
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1861
diff changeset
1200 // Error
291
4d7469f72a0b embedding of dicom dictionaries
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 285
diff changeset
1201 buffer.clear();
4d7469f72a0b embedding of dicom dictionaries
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 285
diff changeset
1202 return false;
4d7469f72a0b embedding of dicom dictionaries
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 285
diff changeset
1203 }
4d7469f72a0b embedding of dicom dictionaries
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 285
diff changeset
1204 }
1360
0649c5aef34a DicomFindQuery
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1316
diff changeset
1205
0649c5aef34a DicomFindQuery
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1316
diff changeset
1206
2006
6301bbcbcaed more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1998
diff changeset
1207 ValueRepresentation FromDcmtkBridge::LookupValueRepresentation(const DicomTag& tag)
1360
0649c5aef34a DicomFindQuery
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1316
diff changeset
1208 {
0649c5aef34a DicomFindQuery
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1316
diff changeset
1209 DcmTag t(tag.GetGroup(), tag.GetElement());
2006
6301bbcbcaed more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1998
diff changeset
1210 return Convert(t.getEVR());
6301bbcbcaed more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1998
diff changeset
1211 }
6301bbcbcaed more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1998
diff changeset
1212
6301bbcbcaed more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1998
diff changeset
1213 ValueRepresentation FromDcmtkBridge::Convert(const DcmEVR vr)
6301bbcbcaed more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1998
diff changeset
1214 {
6301bbcbcaed more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1998
diff changeset
1215 switch (vr)
1417
8e23f16a198d fix issues 35 and 37
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1368
diff changeset
1216 {
2006
6301bbcbcaed more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1998
diff changeset
1217 case EVR_AE:
6301bbcbcaed more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1998
diff changeset
1218 return ValueRepresentation_ApplicationEntity;
6301bbcbcaed more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1998
diff changeset
1219
6301bbcbcaed more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1998
diff changeset
1220 case EVR_AS:
6301bbcbcaed more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1998
diff changeset
1221 return ValueRepresentation_AgeString;
6301bbcbcaed more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1998
diff changeset
1222
6301bbcbcaed more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1998
diff changeset
1223 case EVR_AT:
6301bbcbcaed more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1998
diff changeset
1224 return ValueRepresentation_AttributeTag;
6301bbcbcaed more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1998
diff changeset
1225
6301bbcbcaed more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1998
diff changeset
1226 case EVR_CS:
6301bbcbcaed more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1998
diff changeset
1227 return ValueRepresentation_CodeString;
1417
8e23f16a198d fix issues 35 and 37
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1368
diff changeset
1228
8e23f16a198d fix issues 35 and 37
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1368
diff changeset
1229 case EVR_DA:
8e23f16a198d fix issues 35 and 37
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1368
diff changeset
1230 return ValueRepresentation_Date;
8e23f16a198d fix issues 35 and 37
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1368
diff changeset
1231
2006
6301bbcbcaed more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1998
diff changeset
1232 case EVR_DS:
6301bbcbcaed more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1998
diff changeset
1233 return ValueRepresentation_DecimalString;
6301bbcbcaed more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1998
diff changeset
1234
1417
8e23f16a198d fix issues 35 and 37
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1368
diff changeset
1235 case EVR_DT:
8e23f16a198d fix issues 35 and 37
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1368
diff changeset
1236 return ValueRepresentation_DateTime;
8e23f16a198d fix issues 35 and 37
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1368
diff changeset
1237
2006
6301bbcbcaed more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1998
diff changeset
1238 case EVR_FL:
6301bbcbcaed more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1998
diff changeset
1239 return ValueRepresentation_FloatingPointSingle;
6301bbcbcaed more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1998
diff changeset
1240
6301bbcbcaed more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1998
diff changeset
1241 case EVR_FD:
6301bbcbcaed more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1998
diff changeset
1242 return ValueRepresentation_FloatingPointDouble;
6301bbcbcaed more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1998
diff changeset
1243
6301bbcbcaed more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1998
diff changeset
1244 case EVR_IS:
6301bbcbcaed more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1998
diff changeset
1245 return ValueRepresentation_IntegerString;
6301bbcbcaed more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1998
diff changeset
1246
6301bbcbcaed more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1998
diff changeset
1247 case EVR_LO:
6301bbcbcaed more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1998
diff changeset
1248 return ValueRepresentation_LongString;
6301bbcbcaed more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1998
diff changeset
1249
6301bbcbcaed more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1998
diff changeset
1250 case EVR_LT:
6301bbcbcaed more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1998
diff changeset
1251 return ValueRepresentation_LongText;
6301bbcbcaed more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1998
diff changeset
1252
6301bbcbcaed more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1998
diff changeset
1253 case EVR_OB:
6301bbcbcaed more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1998
diff changeset
1254 return ValueRepresentation_OtherByte;
6301bbcbcaed more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1998
diff changeset
1255
6301bbcbcaed more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1998
diff changeset
1256 // Not supported as of DCMTK 3.6.0
6301bbcbcaed more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1998
diff changeset
1257 /*case EVR_OD:
6301bbcbcaed more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1998
diff changeset
1258 return ValueRepresentation_OtherDouble;*/
6301bbcbcaed more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1998
diff changeset
1259
6301bbcbcaed more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1998
diff changeset
1260 case EVR_OF:
6301bbcbcaed more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1998
diff changeset
1261 return ValueRepresentation_OtherFloat;
6301bbcbcaed more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1998
diff changeset
1262
6301bbcbcaed more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1998
diff changeset
1263 // Not supported as of DCMTK 3.6.0
6301bbcbcaed more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1998
diff changeset
1264 /*case EVR_OL:
6301bbcbcaed more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1998
diff changeset
1265 return ValueRepresentation_OtherLong;*/
6301bbcbcaed more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1998
diff changeset
1266
6301bbcbcaed more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1998
diff changeset
1267 case EVR_OW:
6301bbcbcaed more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1998
diff changeset
1268 return ValueRepresentation_OtherWord;
6301bbcbcaed more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1998
diff changeset
1269
6301bbcbcaed more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1998
diff changeset
1270 case EVR_PN:
2007
655489d9165d DicomMap::ParseDicomMetaInformation()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2006
diff changeset
1271 return ValueRepresentation_PersonName;
2006
6301bbcbcaed more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1998
diff changeset
1272
6301bbcbcaed more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1998
diff changeset
1273 case EVR_SH:
6301bbcbcaed more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1998
diff changeset
1274 return ValueRepresentation_ShortString;
6301bbcbcaed more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1998
diff changeset
1275
6301bbcbcaed more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1998
diff changeset
1276 case EVR_SL:
6301bbcbcaed more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1998
diff changeset
1277 return ValueRepresentation_SignedLong;
6301bbcbcaed more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1998
diff changeset
1278
6301bbcbcaed more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1998
diff changeset
1279 case EVR_SQ:
6301bbcbcaed more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1998
diff changeset
1280 return ValueRepresentation_Sequence;
6301bbcbcaed more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1998
diff changeset
1281
6301bbcbcaed more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1998
diff changeset
1282 case EVR_SS:
6301bbcbcaed more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1998
diff changeset
1283 return ValueRepresentation_SignedShort;
6301bbcbcaed more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1998
diff changeset
1284
6301bbcbcaed more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1998
diff changeset
1285 case EVR_ST:
6301bbcbcaed more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1998
diff changeset
1286 return ValueRepresentation_ShortText;
6301bbcbcaed more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1998
diff changeset
1287
1417
8e23f16a198d fix issues 35 and 37
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1368
diff changeset
1288 case EVR_TM:
8e23f16a198d fix issues 35 and 37
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1368
diff changeset
1289 return ValueRepresentation_Time;
8e23f16a198d fix issues 35 and 37
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1368
diff changeset
1290
2006
6301bbcbcaed more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1998
diff changeset
1291 // Not supported as of DCMTK 3.6.0
6301bbcbcaed more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1998
diff changeset
1292 /*case EVR_UC:
6301bbcbcaed more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1998
diff changeset
1293 return ValueRepresentation_UnlimitedCharacters;*/
6301bbcbcaed more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1998
diff changeset
1294
6301bbcbcaed more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1998
diff changeset
1295 case EVR_UI:
6301bbcbcaed more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1998
diff changeset
1296 return ValueRepresentation_UniqueIdentifier;
6301bbcbcaed more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1998
diff changeset
1297
6301bbcbcaed more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1998
diff changeset
1298 case EVR_UL:
6301bbcbcaed more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1998
diff changeset
1299 return ValueRepresentation_UnsignedLong;
6301bbcbcaed more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1998
diff changeset
1300
6301bbcbcaed more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1998
diff changeset
1301 case EVR_UN:
6301bbcbcaed more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1998
diff changeset
1302 return ValueRepresentation_Unknown;
6301bbcbcaed more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1998
diff changeset
1303
6301bbcbcaed more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1998
diff changeset
1304 // Not supported as of DCMTK 3.6.0
6301bbcbcaed more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1998
diff changeset
1305 /*case EVR_UR:
6301bbcbcaed more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1998
diff changeset
1306 return ValueRepresentation_UniversalResource;*/
6301bbcbcaed more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1998
diff changeset
1307
6301bbcbcaed more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1998
diff changeset
1308 case EVR_US:
6301bbcbcaed more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1998
diff changeset
1309 return ValueRepresentation_UnsignedShort;
6301bbcbcaed more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1998
diff changeset
1310
6301bbcbcaed more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1998
diff changeset
1311 case EVR_UT:
6301bbcbcaed more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1998
diff changeset
1312 return ValueRepresentation_UnlimitedText;
1792
b769623c806c safety check
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1765
diff changeset
1313
1417
8e23f16a198d fix issues 35 and 37
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1368
diff changeset
1314 default:
2006
6301bbcbcaed more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1998
diff changeset
1315 return ValueRepresentation_NotSupported;
1417
8e23f16a198d fix issues 35 and 37
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1368
diff changeset
1316 }
1360
0649c5aef34a DicomFindQuery
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1316
diff changeset
1317 }
0649c5aef34a DicomFindQuery
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1316
diff changeset
1318
1689
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1319
1693
558b25228a23 creation of tag hierarchy from json
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1691
diff changeset
1320 static bool IsBinaryTag(const DcmTag& key)
558b25228a23 creation of tag hierarchy from json
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1691
diff changeset
1321 {
1818
1065401501fb ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1792
diff changeset
1322 return (key.isUnknownVR() ||
1739
df331354cea2 include binary in ToJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1738
diff changeset
1323 key.getEVR() == EVR_OB ||
df331354cea2 include binary in ToJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1738
diff changeset
1324 key.getEVR() == EVR_OF ||
df331354cea2 include binary in ToJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1738
diff changeset
1325 key.getEVR() == EVR_OW ||
df331354cea2 include binary in ToJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1738
diff changeset
1326 key.getEVR() == EVR_UN ||
df331354cea2 include binary in ToJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1738
diff changeset
1327 key.getEVR() == EVR_ox);
1693
558b25228a23 creation of tag hierarchy from json
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1691
diff changeset
1328 }
558b25228a23 creation of tag hierarchy from json
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1691
diff changeset
1329
1689
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1330
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1331 DcmElement* FromDcmtkBridge::CreateElementForTag(const DicomTag& tag)
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1332 {
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1333 DcmTag key(tag.GetGroup(), tag.GetElement());
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1334
1818
1065401501fb ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1792
diff changeset
1335 if (tag.IsPrivate() ||
1065401501fb ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1792
diff changeset
1336 IsBinaryTag(key))
1693
558b25228a23 creation of tag hierarchy from json
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1691
diff changeset
1337 {
558b25228a23 creation of tag hierarchy from json
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1691
diff changeset
1338 return new DcmOtherByteOtherWord(key);
558b25228a23 creation of tag hierarchy from json
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1691
diff changeset
1339 }
558b25228a23 creation of tag hierarchy from json
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1691
diff changeset
1340
1689
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1341 switch (key.getEVR())
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1342 {
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1343 // http://support.dcmtk.org/docs/dcvr_8h-source.html
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1344
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1345 /**
1739
df331354cea2 include binary in ToJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1738
diff changeset
1346 * Binary types, handled above
1689
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1347 **/
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1348
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1349 case EVR_OB: // other byte
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1350 case EVR_OF: // other float
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1351 case EVR_OW: // other word
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1352 case EVR_UN: // unknown value representation
1739
df331354cea2 include binary in ToJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1738
diff changeset
1353 case EVR_ox: // OB or OW depending on context
df331354cea2 include binary in ToJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1738
diff changeset
1354 throw OrthancException(ErrorCode_InternalError);
1689
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1355
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1356
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1357 /**
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1358 * String types.
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1359 * http://support.dcmtk.org/docs/classDcmByteString.html
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1360 **/
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1361
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1362 case EVR_AS: // age string
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1363 return new DcmAgeString(key);
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1364
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1365 case EVR_AE: // application entity title
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1366 return new DcmApplicationEntity(key);
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1367
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1368 case EVR_CS: // code string
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1369 return new DcmCodeString(key);
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1370
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1371 case EVR_DA: // date string
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1372 return new DcmDate(key);
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1373
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1374 case EVR_DT: // date time string
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1375 return new DcmDateTime(key);
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1376
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1377 case EVR_DS: // decimal string
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1378 return new DcmDecimalString(key);
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1379
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1380 case EVR_IS: // integer string
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1381 return new DcmIntegerString(key);
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1382
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1383 case EVR_TM: // time string
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1384 return new DcmTime(key);
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1385
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1386 case EVR_UI: // unique identifier
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1387 return new DcmUniqueIdentifier(key);
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1388
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1389 case EVR_ST: // short text
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1390 return new DcmShortText(key);
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1391
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1392 case EVR_LO: // long string
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1393 return new DcmLongString(key);
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1394
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1395 case EVR_LT: // long text
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1396 return new DcmLongText(key);
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1397
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1398 case EVR_UT: // unlimited text
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1399 return new DcmUnlimitedText(key);
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1400
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1401 case EVR_SH: // short string
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1402 return new DcmShortString(key);
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1403
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1404 case EVR_PN: // person name
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1405 return new DcmPersonName(key);
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1406
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1407
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1408 /**
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1409 * Numerical types
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1410 **/
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1411
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1412 case EVR_SL: // signed long
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1413 return new DcmSignedLong(key);
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1414
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1415 case EVR_SS: // signed short
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1416 return new DcmSignedShort(key);
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1417
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1418 case EVR_UL: // unsigned long
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1419 return new DcmUnsignedLong(key);
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1420
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1421 case EVR_US: // unsigned short
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1422 return new DcmUnsignedShort(key);
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1423
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1424 case EVR_FL: // float single-precision
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1425 return new DcmFloatingPointSingle(key);
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1426
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1427 case EVR_FD: // float double-precision
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1428 return new DcmFloatingPointDouble(key);
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1429
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1430
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1431 /**
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1432 * Sequence types, should never occur at this point.
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1433 **/
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1434
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1435 case EVR_SQ: // sequence of items
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1436 throw OrthancException(ErrorCode_ParameterOutOfRange);
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1437
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1438
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1439 /**
1739
df331354cea2 include binary in ToJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1738
diff changeset
1440 * TODO
df331354cea2 include binary in ToJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1738
diff changeset
1441 **/
df331354cea2 include binary in ToJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1738
diff changeset
1442
df331354cea2 include binary in ToJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1738
diff changeset
1443 case EVR_AT: // attribute tag
df331354cea2 include binary in ToJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1738
diff changeset
1444 throw OrthancException(ErrorCode_NotImplemented);
df331354cea2 include binary in ToJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1738
diff changeset
1445
df331354cea2 include binary in ToJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1738
diff changeset
1446
df331354cea2 include binary in ToJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1738
diff changeset
1447 /**
1689
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1448 * Internal to DCMTK.
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1449 **/
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1450
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1451 case EVR_xs: // SS or US depending on context
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1452 case EVR_lt: // US, SS or OW depending on context, used for LUT Data (thus the name)
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1453 case EVR_na: // na="not applicable", for data which has no VR
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1454 case EVR_up: // up="unsigned pointer", used internally for DICOMDIR suppor
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1455 case EVR_item: // used internally for items
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1456 case EVR_metainfo: // used internally for meta info datasets
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1457 case EVR_dataset: // used internally for datasets
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1458 case EVR_fileFormat: // used internally for DICOM files
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1459 case EVR_dicomDir: // used internally for DICOMDIR objects
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1460 case EVR_dirRecord: // used internally for DICOMDIR records
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1461 case EVR_pixelSQ: // used internally for pixel sequences in a compressed image
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1462 case EVR_pixelItem: // used internally for pixel items in a compressed image
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1463 case EVR_UNKNOWN: // used internally for elements with unknown VR (encoded with 4-byte length field in explicit VR)
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1464 case EVR_PixelData: // used internally for uncompressed pixeld data
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1465 case EVR_OverlayData: // used internally for overlay data
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1466 case EVR_UNKNOWN2B: // used internally for elements with unknown VR with 2-byte length field in explicit VR
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1467 default:
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1468 break;
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1469 }
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1470
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1471 throw OrthancException(ErrorCode_InternalError);
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1472 }
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1473
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1474
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1475
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1476 void FromDcmtkBridge::FillElementWithString(DcmElement& element,
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1477 const DicomTag& tag,
1695
18c02c6987d5 fix for encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1694
diff changeset
1478 const std::string& utf8Value,
1818
1065401501fb ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1792
diff changeset
1479 bool decodeDataUriScheme,
1695
18c02c6987d5 fix for encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1694
diff changeset
1480 Encoding dicomEncoding)
1689
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1481 {
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1482 std::string binary;
1695
18c02c6987d5 fix for encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1694
diff changeset
1483 const std::string* decoded = &utf8Value;
1689
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1484
1818
1065401501fb ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1792
diff changeset
1485 if (decodeDataUriScheme &&
1695
18c02c6987d5 fix for encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1694
diff changeset
1486 boost::starts_with(utf8Value, "data:application/octet-stream;base64,"))
1689
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1487 {
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1488 std::string mime;
1981
4b545a8b1f95 return code in Toolbox::DecodeDataUriScheme
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1976
diff changeset
1489 if (!Toolbox::DecodeDataUriScheme(mime, binary, utf8Value))
4b545a8b1f95 return code in Toolbox::DecodeDataUriScheme
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1976
diff changeset
1490 {
4b545a8b1f95 return code in Toolbox::DecodeDataUriScheme
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1976
diff changeset
1491 throw OrthancException(ErrorCode_BadFileFormat);
4b545a8b1f95 return code in Toolbox::DecodeDataUriScheme
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1976
diff changeset
1492 }
4b545a8b1f95 return code in Toolbox::DecodeDataUriScheme
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1976
diff changeset
1493
1695
18c02c6987d5 fix for encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1694
diff changeset
1494 decoded = &binary;
18c02c6987d5 fix for encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1694
diff changeset
1495 }
18c02c6987d5 fix for encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1694
diff changeset
1496 else if (dicomEncoding != Encoding_Utf8)
18c02c6987d5 fix for encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1694
diff changeset
1497 {
18c02c6987d5 fix for encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1694
diff changeset
1498 binary = Toolbox::ConvertFromUtf8(utf8Value, dicomEncoding);
1689
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1499 decoded = &binary;
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1500 }
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1501
1693
558b25228a23 creation of tag hierarchy from json
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1691
diff changeset
1502 DcmTag key(tag.GetGroup(), tag.GetElement());
1689
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1503
1818
1065401501fb ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1792
diff changeset
1504 if (tag.IsPrivate() ||
1065401501fb ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1792
diff changeset
1505 IsBinaryTag(key))
1689
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1506 {
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1507 if (element.putUint8Array((const Uint8*) decoded->c_str(), decoded->size()).good())
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1508 {
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1509 return;
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1510 }
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1511 else
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1512 {
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1513 throw OrthancException(ErrorCode_InternalError);
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1514 }
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1515 }
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1516
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1517 bool ok = false;
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1518
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1519 try
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1520 {
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1521 switch (key.getEVR())
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1522 {
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1523 // http://support.dcmtk.org/docs/dcvr_8h-source.html
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1524
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1525 /**
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1526 * TODO.
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1527 **/
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1528
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1529 case EVR_OB: // other byte
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1530 case EVR_OF: // other float
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1531 case EVR_OW: // other word
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1532 case EVR_AT: // attribute tag
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1533 throw OrthancException(ErrorCode_NotImplemented);
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1534
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1535 case EVR_UN: // unknown value representation
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1536 throw OrthancException(ErrorCode_ParameterOutOfRange);
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1537
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1538
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1539 /**
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1540 * String types.
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1541 **/
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1542
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1543 case EVR_DS: // decimal string
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1544 case EVR_IS: // integer string
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1545 case EVR_AS: // age string
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1546 case EVR_DA: // date string
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1547 case EVR_DT: // date time string
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1548 case EVR_TM: // time string
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1549 case EVR_AE: // application entity title
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1550 case EVR_CS: // code string
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1551 case EVR_SH: // short string
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1552 case EVR_LO: // long string
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1553 case EVR_ST: // short text
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1554 case EVR_LT: // long text
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1555 case EVR_UT: // unlimited text
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1556 case EVR_PN: // person name
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1557 case EVR_UI: // unique identifier
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1558 {
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1559 ok = element.putString(decoded->c_str()).good();
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1560 break;
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1561 }
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1562
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1563
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1564 /**
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1565 * Numerical types
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1566 **/
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1567
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1568 case EVR_SL: // signed long
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1569 {
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1570 ok = element.putSint32(boost::lexical_cast<Sint32>(*decoded)).good();
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1571 break;
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1572 }
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1573
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1574 case EVR_SS: // signed short
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1575 {
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1576 ok = element.putSint16(boost::lexical_cast<Sint16>(*decoded)).good();
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1577 break;
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1578 }
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1579
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1580 case EVR_UL: // unsigned long
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1581 {
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1582 ok = element.putUint32(boost::lexical_cast<Uint32>(*decoded)).good();
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1583 break;
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1584 }
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1585
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1586 case EVR_US: // unsigned short
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1587 {
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1588 ok = element.putUint16(boost::lexical_cast<Uint16>(*decoded)).good();
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1589 break;
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1590 }
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1591
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1592 case EVR_FL: // float single-precision
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1593 {
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1594 ok = element.putFloat32(boost::lexical_cast<float>(*decoded)).good();
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1595 break;
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1596 }
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1597
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1598 case EVR_FD: // float double-precision
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1599 {
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1600 ok = element.putFloat64(boost::lexical_cast<double>(*decoded)).good();
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1601 break;
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1602 }
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1603
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1604
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1605 /**
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1606 * Sequence types, should never occur at this point.
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1607 **/
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1608
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1609 case EVR_SQ: // sequence of items
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1610 {
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1611 ok = false;
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1612 break;
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1613 }
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1614
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1615
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1616 /**
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1617 * Internal to DCMTK.
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1618 **/
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1619
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1620 case EVR_ox: // OB or OW depending on context
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1621 case EVR_xs: // SS or US depending on context
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1622 case EVR_lt: // US, SS or OW depending on context, used for LUT Data (thus the name)
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1623 case EVR_na: // na="not applicable", for data which has no VR
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1624 case EVR_up: // up="unsigned pointer", used internally for DICOMDIR suppor
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1625 case EVR_item: // used internally for items
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1626 case EVR_metainfo: // used internally for meta info datasets
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1627 case EVR_dataset: // used internally for datasets
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1628 case EVR_fileFormat: // used internally for DICOM files
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1629 case EVR_dicomDir: // used internally for DICOMDIR objects
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1630 case EVR_dirRecord: // used internally for DICOMDIR records
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1631 case EVR_pixelSQ: // used internally for pixel sequences in a compressed image
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1632 case EVR_pixelItem: // used internally for pixel items in a compressed image
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1633 case EVR_UNKNOWN: // used internally for elements with unknown VR (encoded with 4-byte length field in explicit VR)
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1634 case EVR_PixelData: // used internally for uncompressed pixeld data
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1635 case EVR_OverlayData: // used internally for overlay data
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1636 case EVR_UNKNOWN2B: // used internally for elements with unknown VR with 2-byte length field in explicit VR
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1637 default:
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1638 break;
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1639 }
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1640 }
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1641 catch (boost::bad_lexical_cast&)
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1642 {
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1643 ok = false;
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1644 }
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1645
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1646 if (!ok)
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1647 {
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1648 throw OrthancException(ErrorCode_InternalError);
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1649 }
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1650 }
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1651
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1652
1693
558b25228a23 creation of tag hierarchy from json
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1691
diff changeset
1653 DcmElement* FromDcmtkBridge::FromJson(const DicomTag& tag,
558b25228a23 creation of tag hierarchy from json
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1691
diff changeset
1654 const Json::Value& value,
1818
1065401501fb ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1792
diff changeset
1655 bool decodeDataUriScheme,
1695
18c02c6987d5 fix for encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1694
diff changeset
1656 Encoding dicomEncoding)
1689
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1657 {
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1658 std::auto_ptr<DcmElement> element;
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1659
1690
ae09132e4237 FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1689
diff changeset
1660 switch (value.type())
1689
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1661 {
1690
ae09132e4237 FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1689
diff changeset
1662 case Json::stringValue:
ae09132e4237 FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1689
diff changeset
1663 element.reset(CreateElementForTag(tag));
1818
1065401501fb ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1792
diff changeset
1664 FillElementWithString(*element, tag, value.asString(), decodeDataUriScheme, dicomEncoding);
1690
ae09132e4237 FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1689
diff changeset
1665 break;
ae09132e4237 FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1689
diff changeset
1666
ae09132e4237 FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1689
diff changeset
1667 case Json::arrayValue:
ae09132e4237 FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1689
diff changeset
1668 {
ae09132e4237 FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1689
diff changeset
1669 DcmTag key(tag.GetGroup(), tag.GetElement());
ae09132e4237 FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1689
diff changeset
1670 if (key.getEVR() != EVR_SQ)
ae09132e4237 FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1689
diff changeset
1671 {
ae09132e4237 FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1689
diff changeset
1672 throw OrthancException(ErrorCode_BadParameterType);
ae09132e4237 FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1689
diff changeset
1673 }
ae09132e4237 FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1689
diff changeset
1674
ae09132e4237 FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1689
diff changeset
1675 DcmSequenceOfItems* sequence = new DcmSequenceOfItems(key, value.size());
ae09132e4237 FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1689
diff changeset
1676 element.reset(sequence);
ae09132e4237 FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1689
diff changeset
1677
ae09132e4237 FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1689
diff changeset
1678 for (Json::Value::ArrayIndex i = 0; i < value.size(); i++)
ae09132e4237 FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1689
diff changeset
1679 {
ae09132e4237 FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1689
diff changeset
1680 std::auto_ptr<DcmItem> item(new DcmItem);
ae09132e4237 FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1689
diff changeset
1681
ae09132e4237 FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1689
diff changeset
1682 Json::Value::Members members = value[i].getMemberNames();
ae09132e4237 FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1689
diff changeset
1683 for (Json::Value::ArrayIndex j = 0; j < members.size(); j++)
ae09132e4237 FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1689
diff changeset
1684 {
1818
1065401501fb ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1792
diff changeset
1685 item->insert(FromJson(ParseTag(members[j]), value[i][members[j]], decodeDataUriScheme, dicomEncoding));
1690
ae09132e4237 FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1689
diff changeset
1686 }
ae09132e4237 FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1689
diff changeset
1687
ae09132e4237 FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1689
diff changeset
1688 sequence->append(item.release());
ae09132e4237 FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1689
diff changeset
1689 }
ae09132e4237 FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1689
diff changeset
1690
ae09132e4237 FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1689
diff changeset
1691 break;
ae09132e4237 FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1689
diff changeset
1692 }
ae09132e4237 FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1689
diff changeset
1693
ae09132e4237 FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1689
diff changeset
1694 default:
ae09132e4237 FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1689
diff changeset
1695 throw OrthancException(ErrorCode_BadParameterType);
1689
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1696 }
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1697
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1698 return element.release();
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1699 }
1765
57b9e6890482 New configuration option: "Dictionary" to declare custom DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1739
diff changeset
1700
57b9e6890482 New configuration option: "Dictionary" to declare custom DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1739
diff changeset
1701
1924
6c73df12ca51 New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1900
diff changeset
1702 DcmPixelSequence* FromDcmtkBridge::GetPixelSequence(DcmDataset& dataset)
6c73df12ca51 New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1900
diff changeset
1703 {
6c73df12ca51 New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1900
diff changeset
1704 DcmElement *element = NULL;
1927
b60f27664b8f simplification in FromDcmtkBridge
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1924
diff changeset
1705 if (!dataset.findAndGetElement(DCM_PixelData, element).good())
1924
6c73df12ca51 New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1900
diff changeset
1706 {
6c73df12ca51 New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1900
diff changeset
1707 throw OrthancException(ErrorCode_BadFileFormat);
6c73df12ca51 New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1900
diff changeset
1708 }
6c73df12ca51 New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1900
diff changeset
1709
6c73df12ca51 New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1900
diff changeset
1710 DcmPixelData& pixelData = dynamic_cast<DcmPixelData&>(*element);
6c73df12ca51 New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1900
diff changeset
1711 DcmPixelSequence* pixelSequence = NULL;
6c73df12ca51 New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1900
diff changeset
1712 if (!pixelData.getEncapsulatedRepresentation
6c73df12ca51 New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1900
diff changeset
1713 (dataset.getOriginalXfer(), NULL, pixelSequence).good())
6c73df12ca51 New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1900
diff changeset
1714 {
6c73df12ca51 New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1900
diff changeset
1715 return NULL;
6c73df12ca51 New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1900
diff changeset
1716 }
6c73df12ca51 New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1900
diff changeset
1717 else
6c73df12ca51 New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1900
diff changeset
1718 {
6c73df12ca51 New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1900
diff changeset
1719 return pixelSequence;
6c73df12ca51 New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1900
diff changeset
1720 }
6c73df12ca51 New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1900
diff changeset
1721 }
1934
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1722
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1723
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1724 Encoding FromDcmtkBridge::ExtractEncoding(const Json::Value& json,
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1725 Encoding defaultEncoding)
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1726 {
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1727 if (json.type() != Json::objectValue)
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1728 {
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1729 throw OrthancException(ErrorCode_BadParameterType);
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1730 }
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1731
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1732 Encoding encoding = defaultEncoding;
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1733
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1734 const Json::Value::Members tags = json.getMemberNames();
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1735
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1736 // Look for SpecificCharacterSet (0008,0005) in the JSON file
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1737 for (size_t i = 0; i < tags.size(); i++)
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1738 {
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1739 DicomTag tag = FromDcmtkBridge::ParseTag(tags[i]);
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1740 if (tag == DICOM_TAG_SPECIFIC_CHARACTER_SET)
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1741 {
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1742 const Json::Value& value = json[tags[i]];
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1743 if (value.type() != Json::stringValue ||
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1744 !GetDicomEncoding(encoding, value.asCString()))
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1745 {
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1746 LOG(ERROR) << "Unknown encoding while creating DICOM from JSON: " << value;
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1747 throw OrthancException(ErrorCode_BadRequest);
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1748 }
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1749 }
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1750 }
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1751
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1752 return encoding;
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1753 }
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1754
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1755
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1756 static void SetString(DcmDataset& target,
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1757 const DcmTag& tag,
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1758 const std::string& value)
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1759 {
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1760 if (!target.putAndInsertString(tag, value.c_str()).good())
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1761 {
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1762 throw OrthancException(ErrorCode_InternalError);
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1763 }
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1764 }
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1765
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1766
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1767 DcmDataset* FromDcmtkBridge::FromJson(const Json::Value& json, // Encoded using UTF-8
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1768 bool generateIdentifiers,
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1769 bool decodeDataUriScheme,
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1770 Encoding defaultEncoding)
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1771 {
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1772 std::auto_ptr<DcmDataset> result(new DcmDataset);
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1773 Encoding encoding = ExtractEncoding(json, defaultEncoding);
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1774
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1775 SetString(*result, DCM_SpecificCharacterSet, GetDicomSpecificCharacterSet(encoding));
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1776
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1777 const Json::Value::Members tags = json.getMemberNames();
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1778
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1779 bool hasPatientId = false;
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1780 bool hasStudyInstanceUid = false;
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1781 bool hasSeriesInstanceUid = false;
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1782 bool hasSopInstanceUid = false;
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1783
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1784 for (size_t i = 0; i < tags.size(); i++)
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1785 {
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1786 DicomTag tag = FromDcmtkBridge::ParseTag(tags[i]);
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1787 const Json::Value& value = json[tags[i]];
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1788
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1789 if (tag == DICOM_TAG_PATIENT_ID)
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1790 {
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1791 hasPatientId = true;
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1792 }
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1793 else if (tag == DICOM_TAG_STUDY_INSTANCE_UID)
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1794 {
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1795 hasStudyInstanceUid = true;
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1796 }
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1797 else if (tag == DICOM_TAG_SERIES_INSTANCE_UID)
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1798 {
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1799 hasSeriesInstanceUid = true;
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1800 }
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1801 else if (tag == DICOM_TAG_SOP_INSTANCE_UID)
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1802 {
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1803 hasSopInstanceUid = true;
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1804 }
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1805
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1806 if (tag != DICOM_TAG_SPECIFIC_CHARACTER_SET)
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1807 {
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1808 std::auto_ptr<DcmElement> element(FromDcmtkBridge::FromJson(tag, value, decodeDataUriScheme, encoding));
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1809 const DcmTagKey& tag = element->getTag();
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1810
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1811 result->findAndDeleteElement(tag);
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1812
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1813 DcmElement* tmp = element.release();
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1814 if (!result->insert(tmp, false, false).good())
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1815 {
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1816 delete tmp;
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1817 throw OrthancException(ErrorCode_InternalError);
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1818 }
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1819 }
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1820 }
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1821
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1822 if (!hasPatientId &&
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1823 generateIdentifiers)
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1824 {
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1825 SetString(*result, DCM_PatientID, GenerateUniqueIdentifier(ResourceType_Patient));
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1826 }
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1827
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1828 if (!hasStudyInstanceUid &&
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1829 generateIdentifiers)
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1830 {
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1831 SetString(*result, DCM_StudyInstanceUID, GenerateUniqueIdentifier(ResourceType_Study));
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1832 }
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1833
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1834 if (!hasSeriesInstanceUid &&
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1835 generateIdentifiers)
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1836 {
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1837 SetString(*result, DCM_SeriesInstanceUID, GenerateUniqueIdentifier(ResourceType_Series));
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1838 }
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1839
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1840 if (!hasSopInstanceUid &&
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1841 generateIdentifiers)
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1842 {
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1843 SetString(*result, DCM_SOPInstanceUID, GenerateUniqueIdentifier(ResourceType_Instance));
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1844 }
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1845
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1846 return result.release();
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1847 }
1935
e251606c1433 FromDcmtkBridge::LoadFromMemoryBuffer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1934
diff changeset
1848
e251606c1433 FromDcmtkBridge::LoadFromMemoryBuffer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1934
diff changeset
1849
e251606c1433 FromDcmtkBridge::LoadFromMemoryBuffer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1934
diff changeset
1850 DcmFileFormat* FromDcmtkBridge::LoadFromMemoryBuffer(const void* buffer,
e251606c1433 FromDcmtkBridge::LoadFromMemoryBuffer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1934
diff changeset
1851 size_t size)
e251606c1433 FromDcmtkBridge::LoadFromMemoryBuffer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1934
diff changeset
1852 {
e251606c1433 FromDcmtkBridge::LoadFromMemoryBuffer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1934
diff changeset
1853 DcmInputBufferStream is;
e251606c1433 FromDcmtkBridge::LoadFromMemoryBuffer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1934
diff changeset
1854 if (size > 0)
e251606c1433 FromDcmtkBridge::LoadFromMemoryBuffer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1934
diff changeset
1855 {
e251606c1433 FromDcmtkBridge::LoadFromMemoryBuffer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1934
diff changeset
1856 is.setBuffer(buffer, size);
e251606c1433 FromDcmtkBridge::LoadFromMemoryBuffer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1934
diff changeset
1857 }
e251606c1433 FromDcmtkBridge::LoadFromMemoryBuffer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1934
diff changeset
1858 is.setEos();
e251606c1433 FromDcmtkBridge::LoadFromMemoryBuffer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1934
diff changeset
1859
e251606c1433 FromDcmtkBridge::LoadFromMemoryBuffer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1934
diff changeset
1860 std::auto_ptr<DcmFileFormat> result(new DcmFileFormat);
e251606c1433 FromDcmtkBridge::LoadFromMemoryBuffer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1934
diff changeset
1861
e251606c1433 FromDcmtkBridge::LoadFromMemoryBuffer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1934
diff changeset
1862 result->transferInit();
e251606c1433 FromDcmtkBridge::LoadFromMemoryBuffer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1934
diff changeset
1863 if (!result->read(is).good())
e251606c1433 FromDcmtkBridge::LoadFromMemoryBuffer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1934
diff changeset
1864 {
e251606c1433 FromDcmtkBridge::LoadFromMemoryBuffer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1934
diff changeset
1865 throw OrthancException(ErrorCode_BadFileFormat);
e251606c1433 FromDcmtkBridge::LoadFromMemoryBuffer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1934
diff changeset
1866 }
e251606c1433 FromDcmtkBridge::LoadFromMemoryBuffer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1934
diff changeset
1867
e251606c1433 FromDcmtkBridge::LoadFromMemoryBuffer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1934
diff changeset
1868 result->loadAllDataIntoMemory();
e251606c1433 FromDcmtkBridge::LoadFromMemoryBuffer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1934
diff changeset
1869 result->transferEnd();
e251606c1433 FromDcmtkBridge::LoadFromMemoryBuffer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1934
diff changeset
1870
e251606c1433 FromDcmtkBridge::LoadFromMemoryBuffer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1934
diff changeset
1871 return result.release();
e251606c1433 FromDcmtkBridge::LoadFromMemoryBuffer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1934
diff changeset
1872 }
1998
9b61701c35f2 New URI "/modalities/.../move" to issue C-Move SCU requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1981
diff changeset
1873
9b61701c35f2 New URI "/modalities/.../move" to issue C-Move SCU requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1981
diff changeset
1874
9b61701c35f2 New URI "/modalities/.../move" to issue C-Move SCU requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1981
diff changeset
1875 void FromDcmtkBridge::FromJson(DicomMap& target,
9b61701c35f2 New URI "/modalities/.../move" to issue C-Move SCU requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1981
diff changeset
1876 const Json::Value& source)
9b61701c35f2 New URI "/modalities/.../move" to issue C-Move SCU requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1981
diff changeset
1877 {
9b61701c35f2 New URI "/modalities/.../move" to issue C-Move SCU requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1981
diff changeset
1878 if (source.type() != Json::objectValue)
9b61701c35f2 New URI "/modalities/.../move" to issue C-Move SCU requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1981
diff changeset
1879 {
9b61701c35f2 New URI "/modalities/.../move" to issue C-Move SCU requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1981
diff changeset
1880 throw OrthancException(ErrorCode_BadFileFormat);
9b61701c35f2 New URI "/modalities/.../move" to issue C-Move SCU requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1981
diff changeset
1881 }
9b61701c35f2 New URI "/modalities/.../move" to issue C-Move SCU requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1981
diff changeset
1882
9b61701c35f2 New URI "/modalities/.../move" to issue C-Move SCU requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1981
diff changeset
1883 target.Clear();
9b61701c35f2 New URI "/modalities/.../move" to issue C-Move SCU requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1981
diff changeset
1884
9b61701c35f2 New URI "/modalities/.../move" to issue C-Move SCU requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1981
diff changeset
1885 Json::Value::Members members = source.getMemberNames();
9b61701c35f2 New URI "/modalities/.../move" to issue C-Move SCU requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1981
diff changeset
1886
9b61701c35f2 New URI "/modalities/.../move" to issue C-Move SCU requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1981
diff changeset
1887 for (size_t i = 0; i < members.size(); i++)
9b61701c35f2 New URI "/modalities/.../move" to issue C-Move SCU requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1981
diff changeset
1888 {
9b61701c35f2 New URI "/modalities/.../move" to issue C-Move SCU requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1981
diff changeset
1889 const Json::Value& value = source[members[i]];
9b61701c35f2 New URI "/modalities/.../move" to issue C-Move SCU requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1981
diff changeset
1890
9b61701c35f2 New URI "/modalities/.../move" to issue C-Move SCU requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1981
diff changeset
1891 if (value.type() != Json::stringValue)
9b61701c35f2 New URI "/modalities/.../move" to issue C-Move SCU requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1981
diff changeset
1892 {
9b61701c35f2 New URI "/modalities/.../move" to issue C-Move SCU requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1981
diff changeset
1893 throw OrthancException(ErrorCode_BadFileFormat);
9b61701c35f2 New URI "/modalities/.../move" to issue C-Move SCU requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1981
diff changeset
1894 }
9b61701c35f2 New URI "/modalities/.../move" to issue C-Move SCU requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1981
diff changeset
1895
2007
655489d9165d DicomMap::ParseDicomMetaInformation()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2006
diff changeset
1896 target.SetValue(ParseTag(members[i]), value.asString(), false);
1998
9b61701c35f2 New URI "/modalities/.../move" to issue C-Move SCU requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1981
diff changeset
1897 }
9b61701c35f2 New URI "/modalities/.../move" to issue C-Move SCU requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1981
diff changeset
1898 }
0
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1899 }