Mercurial > hg > orthanc

annotate OrthancServer/DicomInstanceToStore.cpp @ 3189:6f89d22a6ec0

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New extensions in the database SDK: LookupResourceAndParent and GetAllMetadata
author Sebastien Jodogne <s.jodogne@gmail.com>
date Mon, 04 Feb 2019 15:47:56 +0100
parents 4e43e67f8ecf
children 63f59ad9381a
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1 /**
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2 * Orthanc - A Lightweight, RESTful DICOM Store
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3 * Copyright (C) 2012-2016 Sebastien Jodogne, Medical Physics
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4 * Department, University Hospital of Liege, Belgium
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5 * Copyright (C) 2017-2019 Osimis S.A., Belgium
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6 *
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7 * This program is free software: you can redistribute it and/or
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8 * modify it under the terms of the GNU General Public License as
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9 * published by the Free Software Foundation, either version 3 of the
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10 * License, or (at your option) any later version.
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11 *
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12 * In addition, as a special exception, the copyright holders of this
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13 * program give permission to link the code of its release with the
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14 * OpenSSL project's "OpenSSL" library (or with modified versions of it
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15 * that use the same license as the "OpenSSL" library), and distribute
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16 * the linked executables. You must obey the GNU General Public License
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17 * in all respects for all of the code used other than "OpenSSL". If you
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18 * modify file(s) with this exception, you may extend this exception to
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19 * your version of the file(s), but you are not obligated to do so. If
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20 * you do not wish to do so, delete this exception statement from your
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21 * version. If you delete this exception statement from all source files
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22 * in the program, then also delete it here.
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23 *
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24 * This program is distributed in the hope that it will be useful, but
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25 * WITHOUT ANY WARRANTY; without even the implied warranty of
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26 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
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27 * General Public License for more details.
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28 *
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29 * You should have received a copy of the GNU General Public License
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30 * along with this program. If not, see <http://www.gnu.org/licenses/>.
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31 **/
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32
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33
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34 #include "PrecompiledHeadersServer.h"
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35 #include "DicomInstanceToStore.h"
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36
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37 #include "../Core/DicomParsing/FromDcmtkBridge.h"
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38 #include "../Core/DicomParsing/ParsedDicomFile.h"
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39 #include "../Core/Logging.h"
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40 #include "../Core/OrthancException.h"
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41
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42 #include <dcmtk/dcmdata/dcfilefo.h>
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43 #include <dcmtk/dcmdata/dcdeftag.h>
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44
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45
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46 namespace Orthanc
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47 {
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48 // Anonymous namespace to avoid clashes between compilation modules
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49 namespace
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50 {
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51 template <typename T>
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52 class SmartContainer
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53 {
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54 private:
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55 T* content_;
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56 bool toDelete_;
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57 bool isReadOnly_;
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58
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59 void Deallocate()
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60 {
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61 if (content_ && toDelete_)
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62 {
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63 delete content_;
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64 toDelete_ = false;
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65 content_ = NULL;
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66 }
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67 }
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68
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69 public:
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70 SmartContainer() : content_(NULL), toDelete_(false), isReadOnly_(true)
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71 {
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72 }
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73
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74 ~SmartContainer()
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75 {
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76 Deallocate();
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77 }
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78
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79 void Allocate()
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80 {
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81 Deallocate();
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82 content_ = new T;
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83 toDelete_ = true;
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84 isReadOnly_ = false;
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85 }
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86
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87 void TakeOwnership(T* content)
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88 {
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89 if (content == NULL)
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90 {
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91 throw OrthancException(ErrorCode_ParameterOutOfRange);
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92 }
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93
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94 Deallocate();
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95 content_ = content;
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96 toDelete_ = true;
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97 isReadOnly_ = false;
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98 }
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99
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100 void SetReference(T& content) // Read and write assign, without transfering ownership
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101 {
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102 Deallocate();
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103 content_ = &content;
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104 toDelete_ = false;
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105 isReadOnly_ = false;
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106 }
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107
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108 void SetConstReference(const T& content) // Read-only assign, without transfering ownership
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109 {
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110 Deallocate();
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111 content_ = &const_cast<T&>(content);
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112 toDelete_ = false;
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113 isReadOnly_ = true;
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114 }
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115
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116 bool HasContent() const
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117 {
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118 return content_ != NULL;
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119 }
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120
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121 T& GetContent()
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122 {
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123 if (content_ == NULL)
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124 {
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125 throw OrthancException(ErrorCode_BadSequenceOfCalls);
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126 }
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127
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128 if (isReadOnly_)
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129 {
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130 throw OrthancException(ErrorCode_ReadOnly);
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131 }
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132
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133 return *content_;
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134 }
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135
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136 const T& GetConstContent() const
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137 {
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138 if (content_ == NULL)
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139 {
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140 throw OrthancException(ErrorCode_BadSequenceOfCalls);
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141 }
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142
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143 return *content_;
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144 }
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145 };
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146 }
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147
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148
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149 class DicomInstanceToStore::PImpl
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150 {
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151 public:
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152 DicomInstanceOrigin origin_;
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153 SmartContainer<std::string> buffer_;
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154 SmartContainer<ParsedDicomFile> parsed_;
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155 SmartContainer<DicomMap> summary_;
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156 SmartContainer<Json::Value> json_;
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157 MetadataMap metadata_;
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158
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159 private:
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160 std::auto_ptr<DicomInstanceHasher> hasher_;
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161
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162 void ComputeMissingInformation()
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163 {
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164 if (buffer_.HasContent() &&
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165 summary_.HasContent() &&
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166 json_.HasContent())
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167 {
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168 // Fine, everything is available
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169 return;
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170 }
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171
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172 if (!buffer_.HasContent())
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173 {
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174 if (!parsed_.HasContent())
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175 {
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176 if (!summary_.HasContent())
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177 {
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178 throw OrthancException(ErrorCode_NotImplemented);
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179 }
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180 else
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181 {
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182 parsed_.TakeOwnership(new ParsedDicomFile(summary_.GetConstContent()));
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183 }
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184 }
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185
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186 // Serialize the parsed DICOM file
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187 buffer_.Allocate();
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188 if (!FromDcmtkBridge::SaveToMemoryBuffer(buffer_.GetContent(),
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189 *parsed_.GetContent().GetDcmtkObject().getDataset()))
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190 {
2955
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191 throw OrthancException(ErrorCode_InternalError,
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192 "Unable to serialize a DICOM file to a memory buffer");
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193 }
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194 }
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195
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196 if (summary_.HasContent() &&
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197 json_.HasContent())
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198 {
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199 return;
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200 }
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201
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202 // At this point, we know that the DICOM file is available as a
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203 // memory buffer, but that its summary or its JSON version is
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204 // missing
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205
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206 if (!parsed_.HasContent())
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207 {
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208 parsed_.TakeOwnership(new ParsedDicomFile(buffer_.GetConstContent()));
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209 }
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210
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211 // At this point, we have parsed the DICOM file
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212
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213 if (!summary_.HasContent())
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214 {
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215 summary_.Allocate();
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216 FromDcmtkBridge::ExtractDicomSummary(summary_.GetContent(),
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217 *parsed_.GetContent().GetDcmtkObject().getDataset());
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218 }
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219
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220 if (!json_.HasContent())
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221 {
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222 json_.Allocate();
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223
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224 std::set<DicomTag> ignoreTagLength;
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225 FromDcmtkBridge::ExtractDicomAsJson(json_.GetContent(),
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226 *parsed_.GetContent().GetDcmtkObject().getDataset(),
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diff changeset
227 ignoreTagLength);
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228 }
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229 }
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diff changeset
230
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231
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diff changeset
232 public:
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233 const char* GetBufferData()
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234 {
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235 ComputeMissingInformation();
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236
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237 if (!buffer_.HasContent())
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238 {
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diff changeset
239 throw OrthancException(ErrorCode_InternalError);
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240 }
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241
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diff changeset
242 if (buffer_.GetConstContent().size() == 0)
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diff changeset
243 {
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244 return NULL;
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245 }
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diff changeset
246 else
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247 {
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248 return buffer_.GetConstContent().c_str();
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249 }
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250 }
a27b0e9a3fd9 refactoring DicomInstanceToStore
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diff changeset
251
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252
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253 size_t GetBufferSize()
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254 {
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diff changeset
255 ComputeMissingInformation();
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diff changeset
256
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diff changeset
257 if (!buffer_.HasContent())
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diff changeset
258 {
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diff changeset
259 throw OrthancException(ErrorCode_InternalError);
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260 }
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diff changeset
261
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262 return buffer_.GetConstContent().size();
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diff changeset
263 }
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264
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265
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266 const DicomMap& GetSummary()
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267 {
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268 ComputeMissingInformation();
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269
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270 if (!summary_.HasContent())
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271 {
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272 throw OrthancException(ErrorCode_InternalError);
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273 }
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274
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275 return summary_.GetConstContent();
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276 }
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277
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278
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279 const Json::Value& GetJson()
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280 {
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281 ComputeMissingInformation();
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282
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283 if (!json_.HasContent())
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284 {
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285 throw OrthancException(ErrorCode_InternalError);
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286 }
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287
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288 return json_.GetConstContent();
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289 }
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290
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291
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292 DicomInstanceHasher& GetHasher()
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293 {
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294 if (hasher_.get() == NULL)
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295 {
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296 hasher_.reset(new DicomInstanceHasher(GetSummary()));
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297 }
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298
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299 if (hasher_.get() == NULL)
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300 {
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301 throw OrthancException(ErrorCode_InternalError);
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302 }
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303
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304 return *hasher_;
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305 }
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306
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307
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308 bool LookupTransferSyntax(std::string& result)
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309 {
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310 ComputeMissingInformation();
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311
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312 DicomMap header;
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313 if (DicomMap::ParseDicomMetaInformation(header, GetBufferData(), GetBufferSize()))
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314 {
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315 const DicomValue* value = header.TestAndGetValue(DICOM_TAG_TRANSFER_SYNTAX_UID);
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316 if (value != NULL &&
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317 !value->IsBinary() &&
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318 !value->IsNull())
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319 {
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320 result = Toolbox::StripSpaces(value->GetContent());
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321 return true;
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322 }
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323 }
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324
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325 return false;
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326 }
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327 };
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328
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329
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330 DicomInstanceToStore::DicomInstanceToStore() :
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331 pimpl_(new PImpl)
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332 {
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333 }
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334
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335
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336 void DicomInstanceToStore::SetOrigin(const DicomInstanceOrigin& origin)
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337 {
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338 pimpl_->origin_ = origin;
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339 }
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340
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341
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342 const DicomInstanceOrigin& DicomInstanceToStore::GetOrigin() const
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343 {
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344 return pimpl_->origin_;
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345 }
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346
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347
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348 void DicomInstanceToStore::SetBuffer(const std::string& dicom)
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349 {
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350 pimpl_->buffer_.SetConstReference(dicom);
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351 }
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352
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353
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354 void DicomInstanceToStore::SetParsedDicomFile(ParsedDicomFile& parsed)
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355 {
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356 pimpl_->parsed_.SetReference(parsed);
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357 }
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358
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359
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360 void DicomInstanceToStore::SetSummary(const DicomMap& summary)
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361 {
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362 pimpl_->summary_.SetConstReference(summary);
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363 }
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364
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diff changeset
365
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366 void DicomInstanceToStore::SetJson(const Json::Value& json)
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367 {
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368 pimpl_->json_.SetConstReference(json);
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369 }
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370
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371
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372 const DicomInstanceToStore::MetadataMap& DicomInstanceToStore::GetMetadata() const
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373 {
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374 return pimpl_->metadata_;
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375 }
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376
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377
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378 DicomInstanceToStore::MetadataMap& DicomInstanceToStore::GetMetadata()
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diff changeset
379 {
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380 return pimpl_->metadata_;
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381 }
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382
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383
1004
a226e0959d8b DicomInstanceToStore
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diff changeset
384 void DicomInstanceToStore::AddMetadata(ResourceType level,
1003
1d35281d967c DicomInstanceToStore
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385 MetadataType metadata,
1d35281d967c DicomInstanceToStore
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386 const std::string& value)
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387 {
2894
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diff changeset
388 pimpl_->metadata_[std::make_pair(level, metadata)] = value;
1003
1d35281d967c DicomInstanceToStore
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389 }
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390
1d35281d967c DicomInstanceToStore
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391
1004
a226e0959d8b DicomInstanceToStore
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diff changeset
392 const char* DicomInstanceToStore::GetBufferData()
1003
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diff changeset
393 {
2894
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394 return pimpl_->GetBufferData();
1003
1d35281d967c DicomInstanceToStore
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395 }
1d35281d967c DicomInstanceToStore
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396
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397
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398 size_t DicomInstanceToStore::GetBufferSize()
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399 {
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400 return pimpl_->GetBufferSize();
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401 }
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402
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403
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404 const DicomMap& DicomInstanceToStore::GetSummary()
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405 {
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406 return pimpl_->GetSummary();
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407 }
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408
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409
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410 const Json::Value& DicomInstanceToStore::GetJson()
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411 {
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412 return pimpl_->GetJson();
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413 }
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414
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415
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416 bool DicomInstanceToStore::LookupTransferSyntax(std::string& result)
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417 {
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418 return pimpl_->LookupTransferSyntax(result);
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419 }
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420
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421
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422 DicomInstanceHasher& DicomInstanceToStore::GetHasher()
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423 {
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424 return pimpl_->GetHasher();
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425 }
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426 }