Mercurial > hg > orthanc

annotate OrthancServer/DicomInstanceToStore.cpp @ 2445:6e5bc5c6d1a4

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Fix to allow creating DICOM instances with empty Specific Character Set (0008,0005)
author Sebastien Jodogne <s.jodogne@gmail.com>
date Thu, 14 Dec 2017 13:02:06 +0100
parents e4045b3c9772
children 878b59270859
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1 /**
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2 * Orthanc - A Lightweight, RESTful DICOM Store
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3 * Copyright (C) 2012-2016 Sebastien Jodogne, Medical Physics
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4 * Department, University Hospital of Liege, Belgium
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5 * Copyright (C) 2017 Osimis, Belgium
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6 *
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7 * This program is free software: you can redistribute it and/or
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8 * modify it under the terms of the GNU General Public License as
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9 * published by the Free Software Foundation, either version 3 of the
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10 * License, or (at your option) any later version.
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11 *
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12 * In addition, as a special exception, the copyright holders of this
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13 * program give permission to link the code of its release with the
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14 * OpenSSL project's "OpenSSL" library (or with modified versions of it
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15 * that use the same license as the "OpenSSL" library), and distribute
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16 * the linked executables. You must obey the GNU General Public License
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17 * in all respects for all of the code used other than "OpenSSL". If you
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18 * modify file(s) with this exception, you may extend this exception to
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19 * your version of the file(s), but you are not obligated to do so. If
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20 * you do not wish to do so, delete this exception statement from your
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21 * version. If you delete this exception statement from all source files
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22 * in the program, then also delete it here.
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23 *
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24 * This program is distributed in the hope that it will be useful, but
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25 * WITHOUT ANY WARRANTY; without even the implied warranty of
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26 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
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27 * General Public License for more details.
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28 *
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29 * You should have received a copy of the GNU General Public License
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30 * along with this program. If not, see <http://www.gnu.org/licenses/>.
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31 **/
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32
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33
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34 #include "PrecompiledHeadersServer.h"
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35 #include "DicomInstanceToStore.h"
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36
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37 #include "../Core/DicomParsing/FromDcmtkBridge.h"
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38 #include "../Core/Logging.h"
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39
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40 #include <dcmtk/dcmdata/dcfilefo.h>
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41 #include <dcmtk/dcmdata/dcdeftag.h>
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42
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43
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44 namespace Orthanc
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45 {
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46 void DicomInstanceToStore::AddMetadata(ResourceType level,
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47 MetadataType metadata,
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48 const std::string& value)
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49 {
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50 metadata_[std::make_pair(level, metadata)] = value;
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51 }
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52
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53
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54 void DicomInstanceToStore::ComputeMissingInformation()
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55 {
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56 if (buffer_.HasContent() &&
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57 summary_.HasContent() &&
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58 json_.HasContent())
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59 {
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60 // Fine, everything is available
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61 return;
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62 }
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63
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64 if (!buffer_.HasContent())
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65 {
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66 if (!parsed_.HasContent())
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67 {
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68 if (!summary_.HasContent())
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69 {
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70 throw OrthancException(ErrorCode_NotImplemented);
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71 }
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72 else
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73 {
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74 parsed_.TakeOwnership(new ParsedDicomFile(summary_.GetConstContent()));
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75 }
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76 }
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77
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78 // Serialize the parsed DICOM file
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79 buffer_.Allocate();
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80 if (!FromDcmtkBridge::SaveToMemoryBuffer(buffer_.GetContent(),
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81 *parsed_.GetContent().GetDcmtkObject().getDataset()))
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82 {
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83 LOG(ERROR) << "Unable to serialize a DICOM file to a memory buffer";
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84 throw OrthancException(ErrorCode_InternalError);
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85 }
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86 }
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87
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88 if (summary_.HasContent() &&
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89 json_.HasContent())
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90 {
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91 return;
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92 }
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93
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94 // At this point, we know that the DICOM file is available as a
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95 // memory buffer, but that its summary or its JSON version is
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96 // missing
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97
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98 if (!parsed_.HasContent())
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99 {
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100 parsed_.TakeOwnership(new ParsedDicomFile(buffer_.GetConstContent()));
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101 }
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102
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103 // At this point, we have parsed the DICOM file
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104
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105 if (!summary_.HasContent())
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106 {
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107 summary_.Allocate();
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108 FromDcmtkBridge::ExtractDicomSummary(summary_.GetContent(),
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109 *parsed_.GetContent().GetDcmtkObject().getDataset());
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110 }
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111
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112 if (!json_.HasContent())
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113 {
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114 json_.Allocate();
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115
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116 std::set<DicomTag> ignoreTagLength;
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117 FromDcmtkBridge::ExtractDicomAsJson(json_.GetContent(),
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118 *parsed_.GetContent().GetDcmtkObject().getDataset(),
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119 ignoreTagLength);
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120 }
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121 }
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122
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123
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124
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125 const char* DicomInstanceToStore::GetBufferData()
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126 {
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127 ComputeMissingInformation();
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128
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129 if (!buffer_.HasContent())
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130 {
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131 throw OrthancException(ErrorCode_InternalError);
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132 }
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133
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134 if (buffer_.GetConstContent().size() == 0)
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135 {
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136 return NULL;
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137 }
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diff changeset
138 else
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parents: 1003
diff changeset
139 {
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diff changeset
140 return buffer_.GetConstContent().c_str();
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parents: 1003
diff changeset
141 }
1003
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parents:
diff changeset
142 }
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parents:
diff changeset
143
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parents:
diff changeset
144
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parents:
diff changeset
145 size_t DicomInstanceToStore::GetBufferSize()
1d35281d967c DicomInstanceToStore
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diff changeset
146 {
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diff changeset
147 ComputeMissingInformation();
1004
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parents: 1003
diff changeset
148
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Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1003
diff changeset
149 if (!buffer_.HasContent())
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diff changeset
150 {
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diff changeset
151 throw OrthancException(ErrorCode_InternalError);
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parents: 1003
diff changeset
152 }
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diff changeset
153
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diff changeset
154 return buffer_.GetConstContent().size();
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parents: 1003
diff changeset
155 }
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Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1003
diff changeset
156
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Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1003
diff changeset
157
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diff changeset
158 const DicomMap& DicomInstanceToStore::GetSummary()
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159 {
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diff changeset
160 ComputeMissingInformation();
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diff changeset
161
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diff changeset
162 if (!summary_.HasContent())
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parents: 1003
diff changeset
163 {
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164 throw OrthancException(ErrorCode_InternalError);
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165 }
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parents: 1003
diff changeset
166
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167 return summary_.GetConstContent();
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diff changeset
168 }
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parents: 1003
diff changeset
169
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff changeset
170
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diff changeset
171 const Json::Value& DicomInstanceToStore::GetJson()
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172 {
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diff changeset
173 ComputeMissingInformation();
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parents: 1003
diff changeset
174
a226e0959d8b DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
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diff changeset
175 if (!json_.HasContent())
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diff changeset
176 {
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177 throw OrthancException(ErrorCode_InternalError);
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178 }
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diff changeset
179
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diff changeset
180 return json_.GetConstContent();
1003
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diff changeset
181 }
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182
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diff changeset
183
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184
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185 void DicomInstanceToStore::GetOriginInformation(Json::Value& result) const
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186 {
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187 result = Json::objectValue;
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diff changeset
188 result["RequestOrigin"] = EnumerationToString(origin_);
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189
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diff changeset
190 switch (origin_)
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diff changeset
191 {
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diff changeset
192 case RequestOrigin_Unknown:
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193 {
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194 // None of the methods "SetDicomProtocolOrigin()", "SetHttpOrigin()",
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195 // "SetLuaOrigin()" or "SetPluginsOrigin()" was called!
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diff changeset
196 throw OrthancException(ErrorCode_BadSequenceOfCalls);
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197 }
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198
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diff changeset
199 case RequestOrigin_DicomProtocol:
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diff changeset
200 {
1573
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diff changeset
201 result["RemoteIp"] = remoteIp_;
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diff changeset
202 result["RemoteAet"] = dicomRemoteAet_;
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diff changeset
203 result["CalledAet"] = dicomCalledAet_;
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diff changeset
204 break;
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diff changeset
205 }
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diff changeset
206
1823
0ef4e6e66b56 "Origin" metadata for the instances
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parents: 1822
diff changeset
207 case RequestOrigin_RestApi:
1572
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diff changeset
208 {
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diff changeset
209 result["RemoteIp"] = remoteIp_;
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diff changeset
210 result["Username"] = httpUsername_;
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diff changeset
211 break;
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parents: 1486
diff changeset
212 }
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parents: 1486
diff changeset
213
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diff changeset
214 case RequestOrigin_Lua:
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parents: 1486
diff changeset
215 case RequestOrigin_Plugins:
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diff changeset
216 {
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diff changeset
217 // No additional information available for these kinds of requests
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parents: 1486
diff changeset
218 break;
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parents: 1486
diff changeset
219 }
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parents: 1486
diff changeset
220
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parents: 1486
diff changeset
221 default:
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diff changeset
222 throw OrthancException(ErrorCode_InternalError);
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parents: 1486
diff changeset
223 }
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parents: 1486
diff changeset
224 }
904096e7367e More information about the origin request in OnStoredInstance() callbacks
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parents: 1486
diff changeset
225
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parents: 1486
diff changeset
226
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diff changeset
227 void DicomInstanceToStore::SetDicomProtocolOrigin(const char* remoteIp,
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diff changeset
228 const char* remoteAet,
1572
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diff changeset
229 const char* calledAet)
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parents: 1486
diff changeset
230 {
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parents: 1486
diff changeset
231 origin_ = RequestOrigin_DicomProtocol;
1573
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parents: 1572
diff changeset
232 remoteIp_ = remoteIp;
1572
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diff changeset
233 dicomRemoteAet_ = remoteAet;
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parents: 1486
diff changeset
234 dicomCalledAet_ = calledAet;
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parents: 1486
diff changeset
235 }
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parents: 1486
diff changeset
236
904096e7367e More information about the origin request in OnStoredInstance() callbacks
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parents: 1486
diff changeset
237 void DicomInstanceToStore::SetRestOrigin(const RestApiCall& call)
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parents: 1486
diff changeset
238 {
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parents: 1486
diff changeset
239 origin_ = call.GetRequestOrigin();
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parents: 1486
diff changeset
240
1823
0ef4e6e66b56 "Origin" metadata for the instances
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parents: 1822
diff changeset
241 if (origin_ == RequestOrigin_RestApi)
1572
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parents: 1486
diff changeset
242 {
1573
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parents: 1572
diff changeset
243 remoteIp_ = call.GetRemoteIp();
1572
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parents: 1486
diff changeset
244 httpUsername_ = call.GetUsername();
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parents: 1486
diff changeset
245 }
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parents: 1486
diff changeset
246 }
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parents: 1486
diff changeset
247
904096e7367e More information about the origin request in OnStoredInstance() callbacks
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diff changeset
248 void DicomInstanceToStore::SetHttpOrigin(const char* remoteIp,
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parents: 1486
diff changeset
249 const char* username)
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parents: 1486
diff changeset
250 {
1823
0ef4e6e66b56 "Origin" metadata for the instances
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parents: 1822
diff changeset
251 origin_ = RequestOrigin_RestApi;
1573
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parents: 1572
diff changeset
252 remoteIp_ = remoteIp;
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diff changeset
253 httpUsername_ = username;
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parents: 1486
diff changeset
254 }
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parents: 1486
diff changeset
255
904096e7367e More information about the origin request in OnStoredInstance() callbacks
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parents: 1486
diff changeset
256 void DicomInstanceToStore::SetLuaOrigin()
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diff changeset
257 {
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diff changeset
258 origin_ = RequestOrigin_Lua;
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diff changeset
259 }
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parents: 1486
diff changeset
260
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parents: 1486
diff changeset
261 void DicomInstanceToStore::SetPluginsOrigin()
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parents: 1486
diff changeset
262 {
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diff changeset
263 origin_ = RequestOrigin_Plugins;
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parents: 1486
diff changeset
264 }
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parents: 1486
diff changeset
265
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diff changeset
266 const char* DicomInstanceToStore::GetRemoteAet() const
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parents: 1486
diff changeset
267 {
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parents: 1486
diff changeset
268 if (origin_ == RequestOrigin_DicomProtocol)
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parents: 1486
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269 {
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270 return dicomRemoteAet_.c_str();
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271 }
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272 else
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273 {
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274 return "";
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275 }
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276 }
2189
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277
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278
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279 bool DicomInstanceToStore::LookupTransferSyntax(std::string& result)
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280 {
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281 ComputeMissingInformation();
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282
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283 DicomMap header;
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284 if (DicomMap::ParseDicomMetaInformation(header, GetBufferData(), GetBufferSize()))
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285 {
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286 const DicomValue* value = header.TestAndGetValue(DICOM_TAG_TRANSFER_SYNTAX_UID);
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287 if (value != NULL &&
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288 !value->IsBinary() &&
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289 !value->IsNull())
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290 {
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291 result = Toolbox::StripSpaces(value->GetContent());
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292 return true;
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293 }
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294 }
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295
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296 return false;
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297 }
1003
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298 }