Mercurial > hg > orthanc
annotate OrthancServer/ServerIndex.cpp @ 3083:683d572424b6 db-changes
IDatabaseWrapper::SetResourcesContent
author | Sebastien Jodogne <s.jodogne@gmail.com> |
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date | Fri, 04 Jan 2019 15:52:19 +0100 |
parents | 847a0ed92654 |
children | 74e3e48aa9bd |
rev | line source |
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0 | 1 /** |
62 | 2 * Orthanc - A Lightweight, RESTful DICOM Store |
1900 | 3 * Copyright (C) 2012-2016 Sebastien Jodogne, Medical Physics |
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4 * Department, University Hospital of Liege, Belgium |
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5 * Copyright (C) 2017-2019 Osimis S.A., Belgium |
0 | 6 * |
7 * This program is free software: you can redistribute it and/or | |
8 * modify it under the terms of the GNU General Public License as | |
9 * published by the Free Software Foundation, either version 3 of the | |
10 * License, or (at your option) any later version. | |
136 | 11 * |
12 * In addition, as a special exception, the copyright holders of this | |
13 * program give permission to link the code of its release with the | |
14 * OpenSSL project's "OpenSSL" library (or with modified versions of it | |
15 * that use the same license as the "OpenSSL" library), and distribute | |
16 * the linked executables. You must obey the GNU General Public License | |
17 * in all respects for all of the code used other than "OpenSSL". If you | |
18 * modify file(s) with this exception, you may extend this exception to | |
19 * your version of the file(s), but you are not obligated to do so. If | |
20 * you do not wish to do so, delete this exception statement from your | |
21 * version. If you delete this exception statement from all source files | |
22 * in the program, then also delete it here. | |
0 | 23 * |
24 * This program is distributed in the hope that it will be useful, but | |
25 * WITHOUT ANY WARRANTY; without even the implied warranty of | |
26 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU | |
27 * General Public License for more details. | |
28 * | |
29 * You should have received a copy of the GNU General Public License | |
30 * along with this program. If not, see <http://www.gnu.org/licenses/>. | |
31 **/ | |
32 | |
33 | |
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34 #include "PrecompiledHeadersServer.h" |
0 | 35 #include "ServerIndex.h" |
36 | |
6 | 37 #ifndef NOMINMAX |
2 | 38 #define NOMINMAX |
6 | 39 #endif |
40 | |
1198 | 41 #include "ServerIndexChange.h" |
8 | 42 #include "EmbeddedResources.h" |
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43 #include "OrthancConfiguration.h" |
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44 #include "../Core/DicomParsing/ParsedDicomFile.h" |
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45 #include "ServerToolbox.h" |
0 | 46 #include "../Core/Toolbox.h" |
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47 #include "../Core/Logging.h" |
0 | 48 #include "../Core/DicomFormat/DicomArray.h" |
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49 |
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50 #include "../Core/DicomParsing/FromDcmtkBridge.h" |
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51 #include "ServerContext.h" |
1822 | 52 #include "DicomInstanceToStore.h" |
0 | 53 |
54 #include <boost/lexical_cast.hpp> | |
55 #include <stdio.h> | |
56 | |
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57 static const uint64_t MEGA_BYTES = 1024 * 1024; |
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58 |
62 | 59 namespace Orthanc |
0 | 60 { |
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61 static void CopyListToVector(std::vector<std::string>& target, |
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62 const std::list<std::string>& source) |
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63 { |
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64 target.resize(source.size()); |
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65 |
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66 size_t pos = 0; |
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67 |
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68 for (std::list<std::string>::const_iterator |
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69 it = source.begin(); it != source.end(); ++it) |
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70 { |
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71 target[pos] = *it; |
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72 pos ++; |
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73 } |
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74 } |
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75 |
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76 |
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77 class ServerIndex::Listener : public IDatabaseListener |
0 | 78 { |
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79 private: |
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80 struct FileToRemove |
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81 { |
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82 private: |
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83 std::string uuid_; |
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84 FileContentType type_; |
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85 |
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86 public: |
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87 FileToRemove(const FileInfo& info) : uuid_(info.GetUuid()), |
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88 type_(info.GetContentType()) |
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89 { |
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90 } |
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91 |
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92 const std::string& GetUuid() const |
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93 { |
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94 return uuid_; |
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95 } |
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96 |
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97 FileContentType GetContentType() const |
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98 { |
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99 return type_; |
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100 } |
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101 }; |
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102 |
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103 ServerContext& context_; |
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104 bool hasRemainingLevel_; |
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105 ResourceType remainingType_; |
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106 std::string remainingPublicId_; |
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107 std::list<FileToRemove> pendingFilesToRemove_; |
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108 std::list<ServerIndexChange> pendingChanges_; |
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109 uint64_t sizeOfFilesToRemove_; |
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110 bool insideTransaction_; |
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111 |
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112 void Reset() |
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113 { |
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114 sizeOfFilesToRemove_ = 0; |
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115 hasRemainingLevel_ = false; |
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116 pendingFilesToRemove_.clear(); |
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117 pendingChanges_.clear(); |
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118 } |
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119 |
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120 public: |
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121 Listener(ServerContext& context) : context_(context), |
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122 insideTransaction_(false) |
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123 { |
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124 Reset(); |
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125 assert(ResourceType_Patient < ResourceType_Study && |
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126 ResourceType_Study < ResourceType_Series && |
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127 ResourceType_Series < ResourceType_Instance); |
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128 } |
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129 |
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130 void StartTransaction() |
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131 { |
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132 Reset(); |
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133 insideTransaction_ = true; |
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134 } |
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135 |
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136 void EndTransaction() |
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137 { |
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138 insideTransaction_ = false; |
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139 } |
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140 |
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141 uint64_t GetSizeOfFilesToRemove() |
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142 { |
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143 return sizeOfFilesToRemove_; |
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144 } |
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145 |
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146 void CommitFilesToRemove() |
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147 { |
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148 for (std::list<FileToRemove>::const_iterator |
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149 it = pendingFilesToRemove_.begin(); |
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150 it != pendingFilesToRemove_.end(); ++it) |
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151 { |
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152 context_.RemoveFile(it->GetUuid(), it->GetContentType()); |
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153 } |
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154 } |
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155 |
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156 void CommitChanges() |
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157 { |
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158 for (std::list<ServerIndexChange>::const_iterator |
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159 it = pendingChanges_.begin(); |
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160 it != pendingChanges_.end(); ++it) |
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161 { |
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162 context_.SignalChange(*it); |
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163 } |
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164 } |
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165 |
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166 virtual void SignalRemainingAncestor(ResourceType parentType, |
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167 const std::string& publicId) |
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168 { |
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169 VLOG(1) << "Remaining ancestor \"" << publicId << "\" (" << parentType << ")"; |
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170 |
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171 if (hasRemainingLevel_) |
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172 { |
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173 if (parentType < remainingType_) |
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174 { |
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175 remainingType_ = parentType; |
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176 remainingPublicId_ = publicId; |
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177 } |
1158 | 178 } |
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179 else |
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180 { |
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181 hasRemainingLevel_ = true; |
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182 remainingType_ = parentType; |
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183 remainingPublicId_ = publicId; |
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184 } |
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185 } |
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186 |
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187 virtual void SignalFileDeleted(const FileInfo& info) |
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188 { |
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189 assert(Toolbox::IsUuid(info.GetUuid())); |
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190 pendingFilesToRemove_.push_back(FileToRemove(info)); |
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191 sizeOfFilesToRemove_ += info.GetCompressedSize(); |
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192 } |
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193 |
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194 virtual void SignalChange(const ServerIndexChange& change) |
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195 { |
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196 VLOG(1) << "Change related to resource " << change.GetPublicId() << " of type " |
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197 << EnumerationToString(change.GetResourceType()) << ": " |
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198 << EnumerationToString(change.GetChangeType()); |
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199 |
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200 if (insideTransaction_) |
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201 { |
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202 pendingChanges_.push_back(change); |
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203 } |
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204 else |
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205 { |
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206 context_.SignalChange(change); |
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207 } |
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208 } |
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209 |
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210 bool HasRemainingLevel() const |
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211 { |
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212 return hasRemainingLevel_; |
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213 } |
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214 |
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215 ResourceType GetRemainingType() const |
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216 { |
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217 assert(HasRemainingLevel()); |
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218 return remainingType_; |
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219 } |
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220 |
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221 const std::string& GetRemainingPublicId() const |
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222 { |
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223 assert(HasRemainingLevel()); |
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224 return remainingPublicId_; |
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225 } |
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226 }; |
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228 | |
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229 class ServerIndex::Transaction |
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230 { |
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231 private: |
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232 ServerIndex& index_; |
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233 std::auto_ptr<IDatabaseWrapper::ITransaction> transaction_; |
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234 bool isCommitted_; |
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235 |
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236 public: |
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237 Transaction(ServerIndex& index) : |
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238 index_(index), |
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239 isCommitted_(false) |
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240 { |
1247 | 241 transaction_.reset(index_.db_.StartTransaction()); |
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242 transaction_->Begin(); |
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243 |
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244 index_.listener_->StartTransaction(); |
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245 } |
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246 |
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247 ~Transaction() |
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248 { |
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249 index_.listener_->EndTransaction(); |
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250 |
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251 if (!isCommitted_) |
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252 { |
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253 transaction_->Rollback(); |
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254 } |
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255 } |
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256 |
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257 void Commit(uint64_t sizeOfAddedFiles) |
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258 { |
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259 if (!isCommitted_) |
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260 { |
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261 int64_t delta = (static_cast<int64_t>(sizeOfAddedFiles) - |
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262 static_cast<int64_t>(index_.listener_->GetSizeOfFilesToRemove())); |
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263 |
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264 transaction_->Commit(delta); |
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265 |
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266 // We can remove the files once the SQLite transaction has |
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267 // been successfully committed. Some files might have to be |
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268 // deleted because of recycling. |
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269 index_.listener_->CommitFilesToRemove(); |
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270 |
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271 // Send all the pending changes to the Orthanc plugins |
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272 index_.listener_->CommitChanges(); |
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273 |
278
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274 isCommitted_ = true; |
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275 } |
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276 } |
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277 }; |
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278 |
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279 |
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280 class ServerIndex::UnstableResourcePayload |
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281 { |
1177
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282 private: |
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283 ResourceType type_; |
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284 std::string publicId_; |
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285 boost::posix_time::ptime time_; |
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286 |
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287 public: |
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288 UnstableResourcePayload() : type_(ResourceType_Instance) |
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289 { |
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290 } |
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291 |
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292 UnstableResourcePayload(Orthanc::ResourceType type, |
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293 const std::string& publicId) : |
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294 type_(type), |
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295 publicId_(publicId) |
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296 { |
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297 time_ = boost::posix_time::second_clock::local_time(); |
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298 } |
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299 |
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300 unsigned int GetAge() const |
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301 { |
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302 return (boost::posix_time::second_clock::local_time() - time_).total_seconds(); |
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303 } |
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304 |
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305 ResourceType GetResourceType() const |
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306 { |
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307 return type_; |
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308 } |
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309 |
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310 const std::string& GetPublicId() const |
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311 { |
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312 return publicId_; |
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313 } |
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314 }; |
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315 |
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316 |
3027 | 317 class ServerIndex::MainDicomTagsRegistry : public boost::noncopyable |
318 { | |
319 private: | |
320 class TagInfo | |
321 { | |
322 private: | |
323 ResourceType level_; | |
324 DicomTagType type_; | |
325 | |
326 public: | |
327 TagInfo() | |
328 { | |
329 } | |
330 | |
331 TagInfo(ResourceType level, | |
332 DicomTagType type) : | |
333 level_(level), | |
334 type_(type) | |
335 { | |
336 } | |
337 | |
338 ResourceType GetLevel() const | |
339 { | |
340 return level_; | |
341 } | |
342 | |
343 DicomTagType GetType() const | |
344 { | |
345 return type_; | |
346 } | |
347 }; | |
348 | |
349 typedef std::map<DicomTag, TagInfo> Registry; | |
350 | |
351 | |
352 Registry registry_; | |
353 | |
354 void LoadTags(ResourceType level) | |
355 { | |
356 const DicomTag* tags = NULL; | |
357 size_t size; | |
358 | |
359 ServerToolbox::LoadIdentifiers(tags, size, level); | |
360 | |
361 for (size_t i = 0; i < size; i++) | |
362 { | |
363 if (registry_.find(tags[i]) == registry_.end()) | |
364 { | |
365 registry_[tags[i]] = TagInfo(level, DicomTagType_Identifier); | |
366 } | |
367 else | |
368 { | |
369 // These patient-level tags are copied in the study level | |
370 assert(level == ResourceType_Study && | |
371 (tags[i] == DICOM_TAG_PATIENT_ID || | |
372 tags[i] == DICOM_TAG_PATIENT_NAME || | |
373 tags[i] == DICOM_TAG_PATIENT_BIRTH_DATE)); | |
374 } | |
375 } | |
376 | |
377 DicomMap::LoadMainDicomTags(tags, size, level); | |
378 | |
379 for (size_t i = 0; i < size; i++) | |
380 { | |
381 if (registry_.find(tags[i]) == registry_.end()) | |
382 { | |
383 registry_[tags[i]] = TagInfo(level, DicomTagType_Main); | |
384 } | |
385 } | |
386 } | |
387 | |
388 public: | |
389 MainDicomTagsRegistry() | |
390 { | |
391 LoadTags(ResourceType_Patient); | |
392 LoadTags(ResourceType_Study); | |
393 LoadTags(ResourceType_Series); | |
394 LoadTags(ResourceType_Instance); | |
395 } | |
396 | |
397 void LookupTag(ResourceType& level, | |
398 DicomTagType& type, | |
399 const DicomTag& tag) const | |
400 { | |
401 Registry::const_iterator it = registry_.find(tag); | |
402 | |
403 if (it == registry_.end()) | |
404 { | |
405 // Default values | |
406 level = ResourceType_Instance; | |
407 type = DicomTagType_Generic; | |
408 } | |
409 else | |
410 { | |
411 level = it->second.GetLevel(); | |
412 type = it->second.GetType(); | |
413 } | |
414 } | |
415 }; | |
416 | |
417 | |
212 | 418 bool ServerIndex::DeleteResource(Json::Value& target, |
0 | 419 const std::string& uuid, |
202 | 420 ResourceType expectedType) |
0 | 421 { |
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422 boost::mutex::scoped_lock lock(mutex_); |
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423 |
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424 Transaction t(*this); |
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425 |
202 | 426 int64_t id; |
427 ResourceType type; | |
1294 | 428 if (!db_.LookupResource(id, type, uuid) || |
202 | 429 expectedType != type) |
0 | 430 { |
431 return false; | |
432 } | |
202 | 433 |
1247 | 434 db_.DeleteResource(id); |
0 | 435 |
202 | 436 if (listener_->HasRemainingLevel()) |
0 | 437 { |
202 | 438 ResourceType type = listener_->GetRemainingType(); |
439 const std::string& uuid = listener_->GetRemainingPublicId(); | |
0 | 440 |
441 target["RemainingAncestor"] = Json::Value(Json::objectValue); | |
204 | 442 target["RemainingAncestor"]["Path"] = GetBasePath(type, uuid); |
434
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443 target["RemainingAncestor"]["Type"] = EnumerationToString(type); |
0 | 444 target["RemainingAncestor"]["ID"] = uuid; |
445 } | |
446 else | |
447 { | |
448 target["RemainingAncestor"] = Json::nullValue; | |
449 } | |
450 | |
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451 t.Commit(0); |
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452 |
0 | 453 return true; |
454 } | |
455 | |
456 | |
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457 void ServerIndex::FlushThread(ServerIndex* that, |
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458 unsigned int threadSleep) |
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459 { |
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460 // By default, wait for 10 seconds before flushing |
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461 unsigned int sleep = 10; |
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462 |
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463 try |
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464 { |
744 | 465 boost::mutex::scoped_lock lock(that->mutex_); |
1239 | 466 std::string sleepString; |
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467 |
1247 | 468 if (that->db_.LookupGlobalProperty(sleepString, GlobalProperty_FlushSleep) && |
1239 | 469 Toolbox::IsInteger(sleepString)) |
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470 { |
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471 sleep = boost::lexical_cast<unsigned int>(sleepString); |
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472 } |
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473 } |
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474 catch (boost::bad_lexical_cast&) |
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475 { |
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476 } |
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477 |
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478 LOG(INFO) << "Starting the database flushing thread (sleep = " << sleep << ")"; |
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479 |
511
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480 unsigned int count = 0; |
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481 |
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482 while (!that->done_) |
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483 { |
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484 boost::this_thread::sleep(boost::posix_time::milliseconds(threadSleep)); |
511
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485 count++; |
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486 if (count < sleep) |
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487 { |
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488 continue; |
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489 } |
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490 |
2217 | 491 Logging::Flush(); |
492 | |
511
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493 boost::mutex::scoped_lock lock(that->mutex_); |
1247 | 494 that->db_.FlushToDisk(); |
511
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495 count = 0; |
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496 } |
511
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497 |
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498 LOG(INFO) << "Stopping the database flushing thread"; |
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499 } |
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500 |
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501 |
1247 | 502 static void ComputeExpectedNumberOfInstances(IDatabaseWrapper& db, |
433 | 503 int64_t series, |
504 const DicomMap& dicomSummary) | |
505 { | |
506 try | |
507 { | |
656 | 508 const DicomValue* value; |
509 const DicomValue* value2; | |
510 | |
433 | 511 if ((value = dicomSummary.TestAndGetValue(DICOM_TAG_IMAGES_IN_ACQUISITION)) != NULL && |
512 (value2 = dicomSummary.TestAndGetValue(DICOM_TAG_NUMBER_OF_TEMPORAL_POSITIONS)) != NULL) | |
513 { | |
514 // Patch for series with temporal positions thanks to Will Ryder | |
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515 int64_t imagesInAcquisition = boost::lexical_cast<int64_t>(value->GetContent()); |
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516 int64_t countTemporalPositions = boost::lexical_cast<int64_t>(value2->GetContent()); |
433 | 517 std::string expected = boost::lexical_cast<std::string>(imagesInAcquisition * countTemporalPositions); |
518 db.SetMetadata(series, MetadataType_Series_ExpectedNumberOfInstances, expected); | |
519 } | |
520 | |
521 else if ((value = dicomSummary.TestAndGetValue(DICOM_TAG_NUMBER_OF_SLICES)) != NULL && | |
522 (value2 = dicomSummary.TestAndGetValue(DICOM_TAG_NUMBER_OF_TIME_SLICES)) != NULL) | |
523 { | |
524 // Support of Cardio-PET images | |
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525 int64_t numberOfSlices = boost::lexical_cast<int64_t>(value->GetContent()); |
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526 int64_t numberOfTimeSlices = boost::lexical_cast<int64_t>(value2->GetContent()); |
433 | 527 std::string expected = boost::lexical_cast<std::string>(numberOfSlices * numberOfTimeSlices); |
528 db.SetMetadata(series, MetadataType_Series_ExpectedNumberOfInstances, expected); | |
529 } | |
530 | |
531 else if ((value = dicomSummary.TestAndGetValue(DICOM_TAG_CARDIAC_NUMBER_OF_IMAGES)) != NULL) | |
532 { | |
1737
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533 db.SetMetadata(series, MetadataType_Series_ExpectedNumberOfInstances, value->GetContent()); |
433 | 534 } |
535 } | |
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536 catch (OrthancException&) |
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537 { |
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538 } |
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539 catch (boost::bad_lexical_cast&) |
433 | 540 { |
541 } | |
542 } | |
543 | |
544 | |
1237 | 545 |
546 | |
1238 | 547 bool ServerIndex::GetMetadataAsInteger(int64_t& result, |
1237 | 548 int64_t id, |
549 MetadataType type) | |
550 { | |
1238 | 551 std::string s; |
1247 | 552 if (!db_.LookupMetadata(s, id, type)) |
1237 | 553 { |
554 return false; | |
555 } | |
556 | |
557 try | |
558 { | |
1238 | 559 result = boost::lexical_cast<int64_t>(s); |
1237 | 560 return true; |
561 } | |
562 catch (boost::bad_lexical_cast&) | |
563 { | |
564 return false; | |
565 } | |
566 } | |
567 | |
568 | |
1297 | 569 void ServerIndex::LogChange(int64_t internalId, |
570 ChangeType changeType, | |
571 ResourceType resourceType, | |
572 const std::string& publicId) | |
573 { | |
574 ServerIndexChange change(changeType, resourceType, publicId); | |
1300
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575 |
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576 if (changeType <= ChangeType_INTERNAL_LastLogged) |
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577 { |
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578 db_.LogChange(internalId, change); |
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579 } |
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580 |
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581 assert(listener_.get() != NULL); |
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582 listener_->SignalChange(change); |
1297 | 583 } |
584 | |
1237 | 585 |
586 uint64_t ServerIndex::IncrementGlobalSequenceInternal(GlobalProperty property) | |
587 { | |
588 std::string oldValue; | |
589 | |
1247 | 590 if (db_.LookupGlobalProperty(oldValue, property)) |
1237 | 591 { |
592 uint64_t oldNumber; | |
593 | |
594 try | |
595 { | |
596 oldNumber = boost::lexical_cast<uint64_t>(oldValue); | |
1247 | 597 db_.SetGlobalProperty(property, boost::lexical_cast<std::string>(oldNumber + 1)); |
1237 | 598 return oldNumber + 1; |
599 } | |
600 catch (boost::bad_lexical_cast&) | |
601 { | |
602 throw OrthancException(ErrorCode_InternalError); | |
603 } | |
604 } | |
605 else | |
606 { | |
607 // Initialize the sequence at "1" | |
1247 | 608 db_.SetGlobalProperty(property, "1"); |
1237 | 609 return 1; |
610 } | |
611 } | |
612 | |
613 | |
614 | |
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615 ServerIndex::ServerIndex(ServerContext& context, |
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616 IDatabaseWrapper& db, |
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617 unsigned int threadSleep) : |
511
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618 done_(false), |
1247 | 619 db_(db), |
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620 maximumStorageSize_(0), |
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621 maximumPatients_(0), |
3027 | 622 overwrite_(false), |
623 mainDicomTagsRegistry_(new MainDicomTagsRegistry) | |
186
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624 { |
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625 listener_.reset(new Listener(context)); |
1247 | 626 db_.SetListener(*listener_); |
180
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627 |
269
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628 // Initial recycling if the parameters have changed since the last |
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629 // execution of Orthanc |
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630 StandaloneRecycling(); |
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631 |
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632 if (db.HasFlushToDisk()) |
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633 { |
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634 flushThread_ = boost::thread(FlushThread, this, threadSleep); |
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635 } |
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636 |
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637 unstableResourcesMonitorThread_ = boost::thread |
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638 (UnstableResourcesMonitorThread, this, threadSleep); |
206
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639 } |
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640 |
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641 |
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642 |
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643 ServerIndex::~ServerIndex() |
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644 { |
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645 if (!done_) |
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646 { |
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647 LOG(ERROR) << "INTERNAL ERROR: ServerIndex::Stop() should be invoked manually to avoid mess in the destruction order!"; |
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648 Stop(); |
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649 } |
0 | 650 } |
651 | |
652 | |
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653 |
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654 void ServerIndex::Stop() |
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655 { |
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656 if (!done_) |
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657 { |
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658 done_ = true; |
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659 |
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660 if (db_.HasFlushToDisk() && |
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661 flushThread_.joinable()) |
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662 { |
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663 flushThread_.join(); |
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664 } |
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665 |
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666 if (unstableResourcesMonitorThread_.joinable()) |
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667 { |
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668 unstableResourcesMonitorThread_.join(); |
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669 } |
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670 } |
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671 } |
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672 |
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673 |
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674 |
2188 | 675 void ServerIndex::SetInstanceMetadata(std::map<MetadataType, std::string>& instanceMetadata, |
676 int64_t instance, | |
677 MetadataType metadata, | |
678 const std::string& value) | |
679 { | |
680 db_.SetMetadata(instance, metadata, value); | |
681 instanceMetadata[metadata] = value; | |
682 } | |
683 | |
684 | |
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685 void ServerIndex::SignalNewResource(ChangeType changeType, |
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686 ResourceType level, |
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687 const std::string& publicId, |
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688 int64_t internalId) |
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689 { |
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690 ServerIndexChange change(changeType, level, publicId); |
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691 db_.LogChange(internalId, change); |
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692 |
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693 assert(listener_.get() != NULL); |
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694 listener_->SignalChange(change); |
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695 } |
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696 |
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697 |
1006
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698 StoreStatus ServerIndex::Store(std::map<MetadataType, std::string>& instanceMetadata, |
1822 | 699 DicomInstanceToStore& instanceToStore, |
700 const Attachments& attachments) | |
0 | 701 { |
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702 boost::mutex::scoped_lock lock(mutex_); |
0 | 703 |
1822 | 704 const DicomMap& dicomSummary = instanceToStore.GetSummary(); |
705 const ServerIndex::MetadataMap& metadata = instanceToStore.GetMetadata(); | |
706 | |
1006
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707 instanceMetadata.clear(); |
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708 |
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709 const std::string hashPatient = instanceToStore.GetHasher().HashPatient(); |
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710 const std::string hashStudy = instanceToStore.GetHasher().HashStudy(); |
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711 const std::string hashSeries = instanceToStore.GetHasher().HashSeries(); |
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712 const std::string hashInstance = instanceToStore.GetHasher().HashInstance(); |
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713 |
0 | 714 try |
715 { | |
278
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716 Transaction t(*this); |
0 | 717 |
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718 IDatabaseWrapper::CreateInstanceResult status; |
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719 int64_t instanceId; |
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720 |
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721 // Check whether this instance is already stored |
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722 if (!db_.CreateInstance(status, instanceId, hashPatient, |
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723 hashStudy, hashSeries, hashInstance)) |
0 | 724 { |
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725 // The instance already exists |
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726 |
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727 if (overwrite_) |
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new extension for database plugin SDK: createInstance
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3080
diff
changeset
|
728 { |
847a0ed92654
new extension for database plugin SDK: createInstance
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3080
diff
changeset
|
729 // Overwrite the old instance |
847a0ed92654
new extension for database plugin SDK: createInstance
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3080
diff
changeset
|
730 LOG(INFO) << "Overwriting instance: " << hashInstance; |
847a0ed92654
new extension for database plugin SDK: createInstance
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3080
diff
changeset
|
731 db_.DeleteResource(instanceId); |
847a0ed92654
new extension for database plugin SDK: createInstance
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3080
diff
changeset
|
732 |
847a0ed92654
new extension for database plugin SDK: createInstance
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3080
diff
changeset
|
733 // Re-create the instance, now that the old one is removed |
847a0ed92654
new extension for database plugin SDK: createInstance
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3080
diff
changeset
|
734 if (!db_.CreateInstance(status, instanceId, hashPatient, |
847a0ed92654
new extension for database plugin SDK: createInstance
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3080
diff
changeset
|
735 hashStudy, hashSeries, hashInstance)) |
847a0ed92654
new extension for database plugin SDK: createInstance
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3080
diff
changeset
|
736 { |
847a0ed92654
new extension for database plugin SDK: createInstance
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3080
diff
changeset
|
737 throw OrthancException(ErrorCode_InternalError); |
847a0ed92654
new extension for database plugin SDK: createInstance
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3080
diff
changeset
|
738 } |
847a0ed92654
new extension for database plugin SDK: createInstance
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3080
diff
changeset
|
739 } |
847a0ed92654
new extension for database plugin SDK: createInstance
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3080
diff
changeset
|
740 else |
847a0ed92654
new extension for database plugin SDK: createInstance
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3080
diff
changeset
|
741 { |
847a0ed92654
new extension for database plugin SDK: createInstance
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3080
diff
changeset
|
742 // Do nothing if the instance already exists and overwriting is disabled |
847a0ed92654
new extension for database plugin SDK: createInstance
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3080
diff
changeset
|
743 db_.GetAllMetadata(instanceMetadata, instanceId); |
847a0ed92654
new extension for database plugin SDK: createInstance
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3080
diff
changeset
|
744 return StoreStatus_AlreadyStored; |
847a0ed92654
new extension for database plugin SDK: createInstance
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3080
diff
changeset
|
745 } |
3080
1a75595d8e44
started refactoring of ServerIndex::Store()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3075
diff
changeset
|
746 } |
1a75595d8e44
started refactoring of ServerIndex::Store()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3075
diff
changeset
|
747 |
1a75595d8e44
started refactoring of ServerIndex::Store()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3075
diff
changeset
|
748 |
1a75595d8e44
started refactoring of ServerIndex::Store()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3075
diff
changeset
|
749 // Warn about the creation of new resources. The order must be from instance to patient. |
1a75595d8e44
started refactoring of ServerIndex::Store()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3075
diff
changeset
|
750 SignalNewResource(ChangeType_NewInstance, ResourceType_Instance, hashInstance, instanceId); |
1a75595d8e44
started refactoring of ServerIndex::Store()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3075
diff
changeset
|
751 |
1a75595d8e44
started refactoring of ServerIndex::Store()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3075
diff
changeset
|
752 if (status.isNewSeries_) |
1a75595d8e44
started refactoring of ServerIndex::Store()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3075
diff
changeset
|
753 { |
1a75595d8e44
started refactoring of ServerIndex::Store()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3075
diff
changeset
|
754 SignalNewResource(ChangeType_NewSeries, ResourceType_Series, hashSeries, status.seriesId_); |
0 | 755 } |
3080
1a75595d8e44
started refactoring of ServerIndex::Store()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3075
diff
changeset
|
756 |
1a75595d8e44
started refactoring of ServerIndex::Store()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3075
diff
changeset
|
757 if (status.isNewStudy_) |
1a75595d8e44
started refactoring of ServerIndex::Store()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3075
diff
changeset
|
758 { |
1a75595d8e44
started refactoring of ServerIndex::Store()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3075
diff
changeset
|
759 SignalNewResource(ChangeType_NewStudy, ResourceType_Study, hashStudy, status.studyId_); |
1a75595d8e44
started refactoring of ServerIndex::Store()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3075
diff
changeset
|
760 } |
1a75595d8e44
started refactoring of ServerIndex::Store()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3075
diff
changeset
|
761 |
1a75595d8e44
started refactoring of ServerIndex::Store()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3075
diff
changeset
|
762 if (status.isNewPatient_) |
1a75595d8e44
started refactoring of ServerIndex::Store()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3075
diff
changeset
|
763 { |
1a75595d8e44
started refactoring of ServerIndex::Store()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3075
diff
changeset
|
764 SignalNewResource(ChangeType_NewPatient, ResourceType_Patient, hashPatient, status.patientId_); |
1a75595d8e44
started refactoring of ServerIndex::Store()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3075
diff
changeset
|
765 } |
1a75595d8e44
started refactoring of ServerIndex::Store()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3075
diff
changeset
|
766 |
1a75595d8e44
started refactoring of ServerIndex::Store()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3075
diff
changeset
|
767 |
268
4bc02e2254ec
preparing ServerIndex for recycling
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
264
diff
changeset
|
768 // Ensure there is enough room in the storage for the new instance |
4bc02e2254ec
preparing ServerIndex for recycling
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
264
diff
changeset
|
769 uint64_t instanceSize = 0; |
4bc02e2254ec
preparing ServerIndex for recycling
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
264
diff
changeset
|
770 for (Attachments::const_iterator it = attachments.begin(); |
656 | 771 it != attachments.end(); ++it) |
268
4bc02e2254ec
preparing ServerIndex for recycling
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
264
diff
changeset
|
772 { |
4bc02e2254ec
preparing ServerIndex for recycling
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
264
diff
changeset
|
773 instanceSize += it->GetCompressedSize(); |
4bc02e2254ec
preparing ServerIndex for recycling
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
264
diff
changeset
|
774 } |
4bc02e2254ec
preparing ServerIndex for recycling
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
264
diff
changeset
|
775 |
3080
1a75595d8e44
started refactoring of ServerIndex::Store()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3075
diff
changeset
|
776 Recycle(instanceSize, hashPatient /* don't consider the current patient for recycling */); |
1a75595d8e44
started refactoring of ServerIndex::Store()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3075
diff
changeset
|
777 |
1a75595d8e44
started refactoring of ServerIndex::Store()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3075
diff
changeset
|
778 |
1a75595d8e44
started refactoring of ServerIndex::Store()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3075
diff
changeset
|
779 // Populate the newly-created resources |
3083
683d572424b6
IDatabaseWrapper::SetResourcesContent
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3082
diff
changeset
|
780 |
0 | 781 { |
3083
683d572424b6
IDatabaseWrapper::SetResourcesContent
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3082
diff
changeset
|
782 ResourcesContent content; |
683d572424b6
IDatabaseWrapper::SetResourcesContent
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3082
diff
changeset
|
783 |
683d572424b6
IDatabaseWrapper::SetResourcesContent
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3082
diff
changeset
|
784 content.AddResource(instanceId, ResourceType_Instance, dicomSummary); |
683d572424b6
IDatabaseWrapper::SetResourcesContent
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3082
diff
changeset
|
785 |
683d572424b6
IDatabaseWrapper::SetResourcesContent
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3082
diff
changeset
|
786 if (status.isNewSeries_) |
683d572424b6
IDatabaseWrapper::SetResourcesContent
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3082
diff
changeset
|
787 { |
683d572424b6
IDatabaseWrapper::SetResourcesContent
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3082
diff
changeset
|
788 content.AddResource(status.seriesId_, ResourceType_Series, dicomSummary); |
683d572424b6
IDatabaseWrapper::SetResourcesContent
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3082
diff
changeset
|
789 } |
683d572424b6
IDatabaseWrapper::SetResourcesContent
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3082
diff
changeset
|
790 |
683d572424b6
IDatabaseWrapper::SetResourcesContent
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3082
diff
changeset
|
791 if (status.isNewStudy_) |
683d572424b6
IDatabaseWrapper::SetResourcesContent
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3082
diff
changeset
|
792 { |
683d572424b6
IDatabaseWrapper::SetResourcesContent
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3082
diff
changeset
|
793 content.AddResource(status.studyId_, ResourceType_Study, dicomSummary); |
683d572424b6
IDatabaseWrapper::SetResourcesContent
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3082
diff
changeset
|
794 } |
683d572424b6
IDatabaseWrapper::SetResourcesContent
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3082
diff
changeset
|
795 |
683d572424b6
IDatabaseWrapper::SetResourcesContent
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3082
diff
changeset
|
796 if (status.isNewPatient_) |
683d572424b6
IDatabaseWrapper::SetResourcesContent
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3082
diff
changeset
|
797 { |
683d572424b6
IDatabaseWrapper::SetResourcesContent
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3082
diff
changeset
|
798 content.AddResource(status.patientId_, ResourceType_Patient, dicomSummary); |
683d572424b6
IDatabaseWrapper::SetResourcesContent
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3082
diff
changeset
|
799 } |
683d572424b6
IDatabaseWrapper::SetResourcesContent
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3082
diff
changeset
|
800 |
683d572424b6
IDatabaseWrapper::SetResourcesContent
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3082
diff
changeset
|
801 db_.SetResourcesContent(content); |
3080
1a75595d8e44
started refactoring of ServerIndex::Store()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3075
diff
changeset
|
802 } |
3083
683d572424b6
IDatabaseWrapper::SetResourcesContent
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3082
diff
changeset
|
803 |
3080
1a75595d8e44
started refactoring of ServerIndex::Store()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3075
diff
changeset
|
804 |
202 | 805 // Attach the files to the newly created instance |
232
5368bbe813cf
refactoring of attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
231
diff
changeset
|
806 for (Attachments::const_iterator it = attachments.begin(); |
656 | 807 it != attachments.end(); ++it) |
232
5368bbe813cf
refactoring of attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
231
diff
changeset
|
808 { |
3080
1a75595d8e44
started refactoring of ServerIndex::Store()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3075
diff
changeset
|
809 db_.AddAttachment(instanceId, *it); |
232
5368bbe813cf
refactoring of attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
231
diff
changeset
|
810 } |
3080
1a75595d8e44
started refactoring of ServerIndex::Store()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3075
diff
changeset
|
811 |
202 | 812 |
1002
b067017a8a5b
anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
831
diff
changeset
|
813 // Attach the user-specified metadata |
3080
1a75595d8e44
started refactoring of ServerIndex::Store()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3075
diff
changeset
|
814 // TODO - GROUP THIS |
1006
649d47854314
proper handling of metadata in Store
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1004
diff
changeset
|
815 for (MetadataMap::const_iterator |
649d47854314
proper handling of metadata in Store
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1004
diff
changeset
|
816 it = metadata.begin(); it != metadata.end(); ++it) |
1002
b067017a8a5b
anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
831
diff
changeset
|
817 { |
1006
649d47854314
proper handling of metadata in Store
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1004
diff
changeset
|
818 switch (it->first.first) |
1002
b067017a8a5b
anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
831
diff
changeset
|
819 { |
1006
649d47854314
proper handling of metadata in Store
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1004
diff
changeset
|
820 case ResourceType_Patient: |
3080
1a75595d8e44
started refactoring of ServerIndex::Store()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3075
diff
changeset
|
821 db_.SetMetadata(status.patientId_, it->first.second, it->second); |
1006
649d47854314
proper handling of metadata in Store
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1004
diff
changeset
|
822 break; |
1002
b067017a8a5b
anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
831
diff
changeset
|
823 |
1006
649d47854314
proper handling of metadata in Store
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1004
diff
changeset
|
824 case ResourceType_Study: |
3080
1a75595d8e44
started refactoring of ServerIndex::Store()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3075
diff
changeset
|
825 db_.SetMetadata(status.studyId_, it->first.second, it->second); |
1006
649d47854314
proper handling of metadata in Store
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1004
diff
changeset
|
826 break; |
1002
b067017a8a5b
anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
831
diff
changeset
|
827 |
1006
649d47854314
proper handling of metadata in Store
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1004
diff
changeset
|
828 case ResourceType_Series: |
3080
1a75595d8e44
started refactoring of ServerIndex::Store()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3075
diff
changeset
|
829 db_.SetMetadata(status.seriesId_, it->first.second, it->second); |
1006
649d47854314
proper handling of metadata in Store
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1004
diff
changeset
|
830 break; |
1002
b067017a8a5b
anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
831
diff
changeset
|
831 |
1006
649d47854314
proper handling of metadata in Store
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1004
diff
changeset
|
832 case ResourceType_Instance: |
3080
1a75595d8e44
started refactoring of ServerIndex::Store()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3075
diff
changeset
|
833 SetInstanceMetadata(instanceMetadata, instanceId, it->first.second, it->second); |
1006
649d47854314
proper handling of metadata in Store
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1004
diff
changeset
|
834 break; |
1002
b067017a8a5b
anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
831
diff
changeset
|
835 |
1006
649d47854314
proper handling of metadata in Store
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1004
diff
changeset
|
836 default: |
649d47854314
proper handling of metadata in Store
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1004
diff
changeset
|
837 throw OrthancException(ErrorCode_ParameterOutOfRange); |
1002
b067017a8a5b
anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
831
diff
changeset
|
838 } |
b067017a8a5b
anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
831
diff
changeset
|
839 } |
b067017a8a5b
anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
831
diff
changeset
|
840 |
1004
a226e0959d8b
DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1002
diff
changeset
|
841 // Attach the auto-computed metadata for the patient/study/series levels |
2475
8cc3ca64a534
Orthanc now uses UTC (universal time) instead of local time in its database
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2447
diff
changeset
|
842 std::string now = SystemToolbox::GetNowIsoString(true /* use UTC time (not local time) */); |
3080
1a75595d8e44
started refactoring of ServerIndex::Store()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3075
diff
changeset
|
843 db_.SetMetadata(status.seriesId_, MetadataType_LastUpdate, now); |
1a75595d8e44
started refactoring of ServerIndex::Store()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3075
diff
changeset
|
844 db_.SetMetadata(status.studyId_, MetadataType_LastUpdate, now); |
1a75595d8e44
started refactoring of ServerIndex::Store()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3075
diff
changeset
|
845 db_.SetMetadata(status.patientId_, MetadataType_LastUpdate, now); |
1004
a226e0959d8b
DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1002
diff
changeset
|
846 |
a226e0959d8b
DicomInstanceToStore
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parents:
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diff
changeset
|
847 // Attach the auto-computed metadata for the instance level, |
a226e0959d8b
DicomInstanceToStore
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parents:
1002
diff
changeset
|
848 // reflecting these additions into the input metadata map |
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started refactoring of ServerIndex::Store()
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diff
changeset
|
849 SetInstanceMetadata(instanceMetadata, instanceId, MetadataType_Instance_ReceptionDate, now); |
1a75595d8e44
started refactoring of ServerIndex::Store()
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diff
changeset
|
850 SetInstanceMetadata(instanceMetadata, instanceId, MetadataType_Instance_RemoteAet, |
2664
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serialization of DicomModalityStoreJob, OrthancPeerStoreJob and ResourceModificationJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
851 instanceToStore.GetOrigin().GetRemoteAetC()); |
3080
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started refactoring of ServerIndex::Store()
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diff
changeset
|
852 SetInstanceMetadata(instanceMetadata, instanceId, MetadataType_Instance_Origin, |
2640
c691fcf66071
ResourceModificationJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2573
diff
changeset
|
853 EnumerationToString(instanceToStore.GetOrigin().GetRequestOrigin())); |
2726
46061a91c88a
new metadata (RemoteIP, CalledAET, HttpUsername), "?expand" metadata
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parents:
2717
diff
changeset
|
854 |
1823
0ef4e6e66b56
"Origin" metadata for the instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
855 { |
2189
c4b3259c8bce
New metadata automatically computed at the instance level: "TransferSyntax"
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parents:
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diff
changeset
|
856 std::string s; |
2726
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
857 |
2189
c4b3259c8bce
New metadata automatically computed at the instance level: "TransferSyntax"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2188
diff
changeset
|
858 if (instanceToStore.LookupTransferSyntax(s)) |
c4b3259c8bce
New metadata automatically computed at the instance level: "TransferSyntax"
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parents:
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diff
changeset
|
859 { |
2726
46061a91c88a
new metadata (RemoteIP, CalledAET, HttpUsername), "?expand" metadata
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diff
changeset
|
860 // New in Orthanc 1.2.0 |
3080
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diff
changeset
|
861 SetInstanceMetadata(instanceMetadata, instanceId, MetadataType_Instance_TransferSyntax, s); |
2189
c4b3259c8bce
New metadata automatically computed at the instance level: "TransferSyntax"
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diff
changeset
|
862 } |
2726
46061a91c88a
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diff
changeset
|
863 |
46061a91c88a
new metadata (RemoteIP, CalledAET, HttpUsername), "?expand" metadata
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parents:
2717
diff
changeset
|
864 if (instanceToStore.GetOrigin().LookupRemoteIp(s)) |
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new metadata (RemoteIP, CalledAET, HttpUsername), "?expand" metadata
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diff
changeset
|
865 { |
46061a91c88a
new metadata (RemoteIP, CalledAET, HttpUsername), "?expand" metadata
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diff
changeset
|
866 // New in Orthanc 1.4.0 |
3080
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diff
changeset
|
867 SetInstanceMetadata(instanceMetadata, instanceId, MetadataType_Instance_RemoteIp, s); |
2726
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diff
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|
868 } |
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new metadata (RemoteIP, CalledAET, HttpUsername), "?expand" metadata
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diff
changeset
|
869 |
46061a91c88a
new metadata (RemoteIP, CalledAET, HttpUsername), "?expand" metadata
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parents:
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diff
changeset
|
870 if (instanceToStore.GetOrigin().LookupCalledAet(s)) |
46061a91c88a
new metadata (RemoteIP, CalledAET, HttpUsername), "?expand" metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
871 { |
46061a91c88a
new metadata (RemoteIP, CalledAET, HttpUsername), "?expand" metadata
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parents:
2717
diff
changeset
|
872 // New in Orthanc 1.4.0 |
3080
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started refactoring of ServerIndex::Store()
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parents:
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diff
changeset
|
873 SetInstanceMetadata(instanceMetadata, instanceId, MetadataType_Instance_CalledAet, s); |
2726
46061a91c88a
new metadata (RemoteIP, CalledAET, HttpUsername), "?expand" metadata
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parents:
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diff
changeset
|
874 } |
46061a91c88a
new metadata (RemoteIP, CalledAET, HttpUsername), "?expand" metadata
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parents:
2717
diff
changeset
|
875 |
46061a91c88a
new metadata (RemoteIP, CalledAET, HttpUsername), "?expand" metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2717
diff
changeset
|
876 if (instanceToStore.GetOrigin().LookupHttpUsername(s)) |
46061a91c88a
new metadata (RemoteIP, CalledAET, HttpUsername), "?expand" metadata
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parents:
2717
diff
changeset
|
877 { |
46061a91c88a
new metadata (RemoteIP, CalledAET, HttpUsername), "?expand" metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
878 // New in Orthanc 1.4.0 |
3080
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started refactoring of ServerIndex::Store()
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
879 SetInstanceMetadata(instanceMetadata, instanceId, MetadataType_Instance_HttpUsername, s); |
2726
46061a91c88a
new metadata (RemoteIP, CalledAET, HttpUsername), "?expand" metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2717
diff
changeset
|
880 } |
1823
0ef4e6e66b56
"Origin" metadata for the instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1822
diff
changeset
|
881 } |
0ef4e6e66b56
"Origin" metadata for the instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1822
diff
changeset
|
882 |
202 | 883 const DicomValue* value; |
2208
90ea60bee5ff
New metadata automatically computed at the instance level: "SopClassUid"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2189
diff
changeset
|
884 if ((value = dicomSummary.TestAndGetValue(DICOM_TAG_SOP_CLASS_UID)) != NULL && |
90ea60bee5ff
New metadata automatically computed at the instance level: "SopClassUid"
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
885 !value->IsNull() && |
90ea60bee5ff
New metadata automatically computed at the instance level: "SopClassUid"
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parents:
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diff
changeset
|
886 !value->IsBinary()) |
90ea60bee5ff
New metadata automatically computed at the instance level: "SopClassUid"
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parents:
2189
diff
changeset
|
887 { |
3080
1a75595d8e44
started refactoring of ServerIndex::Store()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3075
diff
changeset
|
888 SetInstanceMetadata(instanceMetadata, instanceId, MetadataType_Instance_SopClassUid, value->GetContent()); |
2208
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New metadata automatically computed at the instance level: "SopClassUid"
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parents:
2189
diff
changeset
|
889 } |
90ea60bee5ff
New metadata automatically computed at the instance level: "SopClassUid"
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diff
changeset
|
890 |
202 | 891 if ((value = dicomSummary.TestAndGetValue(DICOM_TAG_INSTANCE_NUMBER)) != NULL || |
892 (value = dicomSummary.TestAndGetValue(DICOM_TAG_IMAGE_INDEX)) != NULL) | |
0 | 893 { |
1737
ec66a16aa398
removal of DicomStringValue and DicomNullValue
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1725
diff
changeset
|
894 if (!value->IsNull() && |
ec66a16aa398
removal of DicomStringValue and DicomNullValue
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parents:
1725
diff
changeset
|
895 !value->IsBinary()) |
ec66a16aa398
removal of DicomStringValue and DicomNullValue
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1725
diff
changeset
|
896 { |
3080
1a75595d8e44
started refactoring of ServerIndex::Store()
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diff
changeset
|
897 SetInstanceMetadata(instanceMetadata, instanceId, MetadataType_Instance_IndexInSeries, value->GetContent()); |
1737
ec66a16aa398
removal of DicomStringValue and DicomNullValue
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parents:
1725
diff
changeset
|
898 } |
0 | 899 } |
900 | |
1004
a226e0959d8b
DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1002
diff
changeset
|
901 // Check whether the series of this new instance is now completed |
3080
1a75595d8e44
started refactoring of ServerIndex::Store()
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parents:
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diff
changeset
|
902 if (status.isNewSeries_) |
202 | 903 { |
3080
1a75595d8e44
started refactoring of ServerIndex::Store()
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parents:
3075
diff
changeset
|
904 ComputeExpectedNumberOfInstances(db_, status.seriesId_, dicomSummary); |
202 | 905 } |
906 | |
3080
1a75595d8e44
started refactoring of ServerIndex::Store()
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parents:
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diff
changeset
|
907 SeriesStatus seriesStatus = GetSeriesStatus(status.seriesId_); |
205
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logging of completed series
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parents:
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diff
changeset
|
908 if (seriesStatus == SeriesStatus_Complete) |
6ab754744446
logging of completed series
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diff
changeset
|
909 { |
3080
1a75595d8e44
started refactoring of ServerIndex::Store()
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
910 LogChange(status.seriesId_, ChangeType_CompletedSeries, ResourceType_Series, hashSeries); |
205
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logging of completed series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
204
diff
changeset
|
911 } |
6ab754744446
logging of completed series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
204
diff
changeset
|
912 |
511
3b735fdf320b
monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
440
diff
changeset
|
913 // Mark the parent resources of this instance as unstable |
3080
1a75595d8e44
started refactoring of ServerIndex::Store()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
914 MarkAsUnstable(status.seriesId_, ResourceType_Series, hashSeries); |
1a75595d8e44
started refactoring of ServerIndex::Store()
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parents:
3075
diff
changeset
|
915 MarkAsUnstable(status.studyId_, ResourceType_Study, hashStudy); |
1a75595d8e44
started refactoring of ServerIndex::Store()
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parents:
3075
diff
changeset
|
916 MarkAsUnstable(status.patientId_, ResourceType_Patient, hashPatient); |
511
3b735fdf320b
monitoring of stable patients/studies/series
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diff
changeset
|
917 |
278
771f12042be9
more efficient determination of storage size for recycling
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273
diff
changeset
|
918 t.Commit(instanceSize); |
268
4bc02e2254ec
preparing ServerIndex for recycling
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parents:
264
diff
changeset
|
919 |
0 | 920 return StoreStatus_Success; |
921 } | |
62 | 922 catch (OrthancException& e) |
0 | 923 { |
1247 | 924 LOG(ERROR) << "EXCEPTION [" << e.What() << "]"; |
0 | 925 } |
926 | |
927 return StoreStatus_Failure; | |
928 } | |
929 | |
930 | |
238 | 931 void ServerIndex::ComputeStatistics(Json::Value& target) |
0 | 932 { |
206
4453a010d0db
flush to disk thread
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
205
diff
changeset
|
933 boost::mutex::scoped_lock lock(mutex_); |
238 | 934 target = Json::objectValue; |
0 | 935 |
3020
d207f6ac1f86
tracking disk size by the database engine to ensure consistency across transactions
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3019
diff
changeset
|
936 uint64_t cs = db_.GetTotalCompressedSize(); |
1247 | 937 uint64_t us = db_.GetTotalUncompressedSize(); |
440
23e5b35e3c5c
statistics for patient/studies/series/instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
438
diff
changeset
|
938 target["TotalDiskSize"] = boost::lexical_cast<std::string>(cs); |
238 | 939 target["TotalUncompressedSize"] = boost::lexical_cast<std::string>(us); |
1310
61ce8147f30d
custom database back-end
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1306
diff
changeset
|
940 target["TotalDiskSizeMB"] = static_cast<unsigned int>(cs / MEGA_BYTES); |
61ce8147f30d
custom database back-end
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diff
changeset
|
941 target["TotalUncompressedSizeMB"] = static_cast<unsigned int>(us / MEGA_BYTES); |
238 | 942 |
1247 | 943 target["CountPatients"] = static_cast<unsigned int>(db_.GetResourceCount(ResourceType_Patient)); |
944 target["CountStudies"] = static_cast<unsigned int>(db_.GetResourceCount(ResourceType_Study)); | |
945 target["CountSeries"] = static_cast<unsigned int>(db_.GetResourceCount(ResourceType_Series)); | |
946 target["CountInstances"] = static_cast<unsigned int>(db_.GetResourceCount(ResourceType_Instance)); | |
238 | 947 } |
948 | |
187
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refactoring of storing new instances
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diff
changeset
|
949 |
8e673a65564d
refactoring of storing new instances
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diff
changeset
|
950 |
585 | 951 SeriesStatus ServerIndex::GetSeriesStatus(int64_t id) |
199 | 952 { |
953 // Get the expected number of instances in this series (from the metadata) | |
1238 | 954 int64_t expected; |
955 if (!GetMetadataAsInteger(expected, id, MetadataType_Series_ExpectedNumberOfInstances)) | |
199 | 956 { |
957 return SeriesStatus_Unknown; | |
958 } | |
959 | |
960 // Loop over the instances of this series | |
961 std::list<int64_t> children; | |
1247 | 962 db_.GetChildrenInternalId(children, id); |
199 | 963 |
1238 | 964 std::set<int64_t> instances; |
199 | 965 for (std::list<int64_t>::const_iterator |
656 | 966 it = children.begin(); it != children.end(); ++it) |
199 | 967 { |
968 // Get the index of this instance in the series | |
1238 | 969 int64_t index; |
970 if (!GetMetadataAsInteger(index, *it, MetadataType_Instance_IndexInSeries)) | |
199 | 971 { |
972 return SeriesStatus_Unknown; | |
973 } | |
974 | |
656 | 975 if (!(index > 0 && index <= expected)) |
199 | 976 { |
977 // Out-of-range instance index | |
978 return SeriesStatus_Inconsistent; | |
979 } | |
980 | |
981 if (instances.find(index) != instances.end()) | |
982 { | |
983 // Twice the same instance index | |
984 return SeriesStatus_Inconsistent; | |
985 } | |
986 | |
987 instances.insert(index); | |
988 } | |
989 | |
1238 | 990 if (static_cast<int64_t>(instances.size()) == expected) |
199 | 991 { |
992 return SeriesStatus_Complete; | |
993 } | |
994 else | |
995 { | |
996 return SeriesStatus_Missing; | |
997 } | |
998 } | |
999 | |
1000 | |
202 | 1001 void ServerIndex::MainDicomTagsToJson(Json::Value& target, |
1668
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reconstructing main dicom tags
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
1002 int64_t resourceId, |
de1413733c97
reconstructing main dicom tags
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diff
changeset
|
1003 ResourceType resourceType) |
198
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diff
changeset
|
1004 { |
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diff
changeset
|
1005 DicomMap tags; |
1247 | 1006 db_.GetMainDicomTags(tags, resourceId); |
1676
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patient tags reported in studies
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diff
changeset
|
1007 |
f079f3efe33b
patient tags reported in studies
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diff
changeset
|
1008 if (resourceType == ResourceType_Study) |
f079f3efe33b
patient tags reported in studies
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diff
changeset
|
1009 { |
f079f3efe33b
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diff
changeset
|
1010 DicomMap t1, t2; |
f079f3efe33b
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diff
changeset
|
1011 tags.ExtractStudyInformation(t1); |
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diff
changeset
|
1012 tags.ExtractPatientInformation(t2); |
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patient tags reported in studies
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diff
changeset
|
1013 |
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diff
changeset
|
1014 target["MainDicomTags"] = Json::objectValue; |
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diff
changeset
|
1015 FromDcmtkBridge::ToJson(target["MainDicomTags"], t1, true); |
f079f3efe33b
patient tags reported in studies
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diff
changeset
|
1016 |
f079f3efe33b
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diff
changeset
|
1017 target["PatientMainDicomTags"] = Json::objectValue; |
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diff
changeset
|
1018 FromDcmtkBridge::ToJson(target["PatientMainDicomTags"], t2, true); |
f079f3efe33b
patient tags reported in studies
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diff
changeset
|
1019 } |
f079f3efe33b
patient tags reported in studies
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diff
changeset
|
1020 else |
f079f3efe33b
patient tags reported in studies
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parents:
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diff
changeset
|
1021 { |
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diff
changeset
|
1022 target["MainDicomTags"] = Json::objectValue; |
f079f3efe33b
patient tags reported in studies
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parents:
1668
diff
changeset
|
1023 FromDcmtkBridge::ToJson(target["MainDicomTags"], tags, true); |
f079f3efe33b
patient tags reported in studies
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diff
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|
1024 } |
198
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1025 } |
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1026 |
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1027 bool ServerIndex::LookupResource(Json::Value& result, |
199 | 1028 const std::string& publicId, |
1029 ResourceType expectedType) | |
198
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1030 { |
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1031 result = Json::objectValue; |
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|
1032 |
206
4453a010d0db
flush to disk thread
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diff
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|
1033 boost::mutex::scoped_lock lock(mutex_); |
199 | 1034 |
198
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|
1035 // Lookup for the requested resource |
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1036 int64_t id; |
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|
1037 ResourceType type; |
1294 | 1038 if (!db_.LookupResource(id, type, publicId) || |
199 | 1039 type != expectedType) |
198
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1040 { |
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1041 return false; |
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1042 } |
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|
1043 |
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|
1044 // Find the parent resource (if it exists) |
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|
1045 if (type != ResourceType_Patient) |
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|
1046 { |
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|
1047 int64_t parentId; |
1247 | 1048 if (!db_.LookupParent(parentId, id)) |
198
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|
1049 { |
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|
1050 throw OrthancException(ErrorCode_InternalError); |
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|
1051 } |
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|
1052 |
1247 | 1053 std::string parent = db_.GetPublicId(parentId); |
198
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|
1054 |
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|
1055 switch (type) |
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|
1056 { |
269
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diff
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|
1057 case ResourceType_Study: |
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|
1058 result["ParentPatient"] = parent; |
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diff
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|
1059 break; |
198
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|
1060 |
269
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|
1061 case ResourceType_Series: |
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1062 result["ParentStudy"] = parent; |
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diff
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|
1063 break; |
198
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|
1064 |
269
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1065 case ResourceType_Instance: |
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1066 result["ParentSeries"] = parent; |
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|
1067 break; |
198
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|
1068 |
269
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1069 default: |
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|
1070 throw OrthancException(ErrorCode_InternalError); |
198
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|
1071 } |
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1072 } |
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|
1073 |
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|
1074 // List the children resources |
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|
1075 std::list<std::string> children; |
1247 | 1076 db_.GetChildrenPublicId(children, id); |
198
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|
1077 |
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|
1078 if (type != ResourceType_Instance) |
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|
1079 { |
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|
1080 Json::Value c = Json::arrayValue; |
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|
1081 |
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|
1082 for (std::list<std::string>::const_iterator |
656 | 1083 it = children.begin(); it != children.end(); ++it) |
198
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|
1084 { |
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|
1085 c.append(*it); |
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|
1086 } |
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|
1087 |
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diff
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|
1088 switch (type) |
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diff
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|
1089 { |
269
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diff
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|
1090 case ResourceType_Patient: |
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diff
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|
1091 result["Studies"] = c; |
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diff
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|
1092 break; |
198
663cc6c46d0a
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diff
changeset
|
1093 |
269
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diff
changeset
|
1094 case ResourceType_Study: |
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diff
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|
1095 result["Series"] = c; |
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diff
changeset
|
1096 break; |
198
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diff
changeset
|
1097 |
269
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diff
changeset
|
1098 case ResourceType_Series: |
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diff
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|
1099 result["Instances"] = c; |
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diff
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|
1100 break; |
198
663cc6c46d0a
before refactoring of ServerIndex::GetXXX
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diff
changeset
|
1101 |
269
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diff
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|
1102 default: |
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|
1103 throw OrthancException(ErrorCode_InternalError); |
198
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|
1104 } |
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|
1105 } |
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|
1106 |
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|
1107 // Set the resource type |
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|
1108 switch (type) |
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|
1109 { |
269
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|
1110 case ResourceType_Patient: |
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|
1111 result["Type"] = "Patient"; |
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diff
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|
1112 break; |
198
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changeset
|
1113 |
269
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diff
changeset
|
1114 case ResourceType_Study: |
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|
1115 result["Type"] = "Study"; |
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|
1116 break; |
199 | 1117 |
269
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|
1118 case ResourceType_Series: |
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|
1119 { |
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|
1120 result["Type"] = "Series"; |
434
ccf3a0a43dac
EnumerationDictionary
Sebastien Jodogne <s.jodogne@gmail.com>
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433
diff
changeset
|
1121 result["Status"] = EnumerationToString(GetSeriesStatus(id)); |
198
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|
1122 |
1238 | 1123 int64_t i; |
1237 | 1124 if (GetMetadataAsInteger(i, id, MetadataType_Series_ExpectedNumberOfInstances)) |
1238 | 1125 result["ExpectedNumberOfInstances"] = static_cast<int>(i); |
269
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|
1126 else |
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changeset
|
1127 result["ExpectedNumberOfInstances"] = Json::nullValue; |
200
9c58b2b03cf0
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diff
changeset
|
1128 |
269
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|
1129 break; |
200
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199
diff
changeset
|
1130 } |
9c58b2b03cf0
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diff
changeset
|
1131 |
269
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changeset
|
1132 case ResourceType_Instance: |
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|
1133 { |
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|
1134 result["Type"] = "Instance"; |
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1135 |
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|
1136 FileInfo attachment; |
1247 | 1137 if (!db_.LookupAttachment(attachment, id, FileContentType_Dicom)) |
269
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1138 { |
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1139 throw OrthancException(ErrorCode_InternalError); |
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1140 } |
200
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diff
changeset
|
1141 |
269
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|
1142 result["FileSize"] = static_cast<unsigned int>(attachment.GetUncompressedSize()); |
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|
1143 result["FileUuid"] = attachment.GetUuid(); |
200
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diff
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|
1144 |
1238 | 1145 int64_t i; |
1237 | 1146 if (GetMetadataAsInteger(i, id, MetadataType_Instance_IndexInSeries)) |
1238 | 1147 result["IndexInSeries"] = static_cast<int>(i); |
269
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|
1148 else |
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|
1149 result["IndexInSeries"] = Json::nullValue; |
198
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|
1150 |
269
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changeset
|
1151 break; |
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1152 } |
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changeset
|
1153 |
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changeset
|
1154 default: |
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1155 throw OrthancException(ErrorCode_InternalError); |
198
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1156 } |
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1157 |
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1158 // Record the remaining information |
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|
1159 result["ID"] = publicId; |
1668
de1413733c97
reconstructing main dicom tags
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diff
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|
1160 MainDicomTagsToJson(result, id, type); |
198
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1161 |
315 | 1162 std::string tmp; |
1163 | |
1247 | 1164 if (db_.LookupMetadata(tmp, id, MetadataType_AnonymizedFrom)) |
1236 | 1165 { |
315 | 1166 result["AnonymizedFrom"] = tmp; |
1236 | 1167 } |
315 | 1168 |
1247 | 1169 if (db_.LookupMetadata(tmp, id, MetadataType_ModifiedFrom)) |
1236 | 1170 { |
315 | 1171 result["ModifiedFrom"] = tmp; |
1236 | 1172 } |
315 | 1173 |
511
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|
1174 if (type == ResourceType_Patient || |
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1175 type == ResourceType_Study || |
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diff
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|
1176 type == ResourceType_Series) |
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diff
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|
1177 { |
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diff
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|
1178 result["IsStable"] = !unstableResources_.Contains(id); |
1148
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Sebastien Jodogne <s.jodogne@gmail.com>
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|
1179 |
1247 | 1180 if (db_.LookupMetadata(tmp, id, MetadataType_LastUpdate)) |
1236 | 1181 { |
1148
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1182 result["LastUpdate"] = tmp; |
1236 | 1183 } |
511
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1184 } |
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1185 |
198
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1186 return true; |
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1187 } |
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1188 |
0 | 1189 |
232
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1190 bool ServerIndex::LookupAttachment(FileInfo& attachment, |
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1191 const std::string& instanceUuid, |
233 | 1192 FileContentType contentType) |
0 | 1193 { |
206
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1194 boost::mutex::scoped_lock lock(mutex_); |
0 | 1195 |
193
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1196 int64_t id; |
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1197 ResourceType type; |
1294 | 1198 if (!db_.LookupResource(id, type, instanceUuid)) |
192
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1199 { |
1113
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|
1200 throw OrthancException(ErrorCode_UnknownResource); |
192
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1201 } |
193
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1202 |
1247 | 1203 if (db_.LookupAttachment(attachment, id, contentType)) |
232
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1204 { |
233 | 1205 assert(attachment.GetContentType() == contentType); |
232
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1206 return true; |
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1207 } |
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|
1208 else |
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1209 { |
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|
1210 return false; |
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1211 } |
192
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1212 } |
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1213 |
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1214 |
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|
1215 |
1354 | 1216 void ServerIndex::GetAllUuids(std::list<std::string>& target, |
190 | 1217 ResourceType resourceType) |
0 | 1218 { |
1357 | 1219 boost::mutex::scoped_lock lock(mutex_); |
1220 db_.GetAllPublicIds(target, resourceType); | |
0 | 1221 } |
1222 | |
1223 | |
1509
0586ed8897f1
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
1224 void ServerIndex::GetAllUuids(std::list<std::string>& target, |
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
1225 ResourceType resourceType, |
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diff
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|
1226 size_t since, |
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
1227 size_t limit) |
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
1228 { |
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
1229 if (limit == 0) |
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
1230 { |
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
1231 target.clear(); |
0586ed8897f1
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
1232 return; |
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
1233 } |
0586ed8897f1
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
1234 |
0586ed8897f1
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Sebastien Jodogne <s.jodogne@gmail.com>
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1486
diff
changeset
|
1235 boost::mutex::scoped_lock lock(mutex_); |
0586ed8897f1
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
1236 db_.GetAllPublicIds(target, resourceType, since, limit); |
0586ed8897f1
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|
1237 } |
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|
1238 |
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
1239 |
1244 | 1240 template <typename T> |
1241 static void FormatLog(Json::Value& target, | |
1242 const std::list<T>& log, | |
1243 const std::string& name, | |
1244 bool done, | |
1245 int64_t since) | |
1240 | 1246 { |
1247 Json::Value items = Json::arrayValue; | |
1244 | 1248 for (typename std::list<T>::const_iterator |
1304 | 1249 it = log.begin(); it != log.end(); ++it) |
1240 | 1250 { |
1251 Json::Value item; | |
1252 it->Format(item); | |
1253 items.append(item); | |
1254 } | |
1255 | |
1256 target = Json::objectValue; | |
1244 | 1257 target[name] = items; |
1240 | 1258 target["Done"] = done; |
1259 | |
1305 | 1260 int64_t last = (log.empty() ? since : log.back().GetSeq()); |
1240 | 1261 target["Last"] = static_cast<int>(last); |
1262 } | |
1263 | |
1264 | |
1247 | 1265 void ServerIndex::GetChanges(Json::Value& target, |
204 | 1266 int64_t since, |
0 | 1267 unsigned int maxResults) |
1268 { | |
1240 | 1269 std::list<ServerIndexChange> changes; |
1270 bool done; | |
1271 | |
1272 { | |
1273 boost::mutex::scoped_lock lock(mutex_); | |
2717
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|
1274 |
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changeset
|
1275 // Fix wrt. Orthanc <= 1.3.2: A transaction was missing, as |
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changeset
|
1276 // "GetLastChange()" involves calls to "GetPublicId()" |
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diff
changeset
|
1277 Transaction transaction(*this); |
1247 | 1278 db_.GetChanges(changes, done, since, maxResults); |
2717
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|
1279 transaction.Commit(0); |
1240 | 1280 } |
1281 | |
1244 | 1282 FormatLog(target, changes, "Changes", done, since); |
237
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diff
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1283 } |
0 | 1284 |
1240 | 1285 |
1247 | 1286 void ServerIndex::GetLastChange(Json::Value& target) |
237
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|
1287 { |
1240 | 1288 std::list<ServerIndexChange> changes; |
1289 | |
1290 { | |
1291 boost::mutex::scoped_lock lock(mutex_); | |
2717
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|
1292 |
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changeset
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1293 // Fix wrt. Orthanc <= 1.3.2: A transaction was missing, as |
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|
1294 // "GetLastChange()" involves calls to "GetPublicId()" |
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changeset
|
1295 Transaction transaction(*this); |
1247 | 1296 db_.GetLastChange(changes); |
2717
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|
1297 transaction.Commit(0); |
1240 | 1298 } |
1299 | |
1244 | 1300 FormatLog(target, changes, "Changes", true, 0); |
0 | 1301 } |
231 | 1302 |
1240 | 1303 |
231 | 1304 void ServerIndex::LogExportedResource(const std::string& publicId, |
1305 const std::string& remoteModality) | |
1306 { | |
1307 boost::mutex::scoped_lock lock(mutex_); | |
1310
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|
1308 Transaction transaction(*this); |
231 | 1309 |
1310 int64_t id; | |
1311 ResourceType type; | |
1294 | 1312 if (!db_.LookupResource(id, type, publicId)) |
231 | 1313 { |
2573
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StoreScuJob, Orthanc Explorer for jobs
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|
1314 throw OrthancException(ErrorCode_InexistentItem); |
231 | 1315 } |
1316 | |
1317 std::string patientId; | |
1318 std::string studyInstanceUid; | |
1319 std::string seriesInstanceUid; | |
1320 std::string sopInstanceUid; | |
1321 | |
1322 int64_t currentId = id; | |
1323 ResourceType currentType = type; | |
1324 | |
1325 // Iteratively go up inside the patient/study/series/instance hierarchy | |
1326 bool done = false; | |
1327 while (!done) | |
1328 { | |
1329 DicomMap map; | |
1247 | 1330 db_.GetMainDicomTags(map, currentId); |
231 | 1331 |
1332 switch (currentType) | |
1333 { | |
269
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1334 case ResourceType_Patient: |
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|
1335 if (map.HasTag(DICOM_TAG_PATIENT_ID)) |
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1336 { |
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|
1337 patientId = map.GetValue(DICOM_TAG_PATIENT_ID).GetContent(); |
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1338 } |
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1339 done = true; |
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1340 break; |
231 | 1341 |
269
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1342 case ResourceType_Study: |
2090
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1343 if (map.HasTag(DICOM_TAG_STUDY_INSTANCE_UID)) |
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1344 { |
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1345 studyInstanceUid = map.GetValue(DICOM_TAG_STUDY_INSTANCE_UID).GetContent(); |
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1346 } |
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1347 currentType = ResourceType_Patient; |
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1348 break; |
231 | 1349 |
269
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1350 case ResourceType_Series: |
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1351 if (map.HasTag(DICOM_TAG_SERIES_INSTANCE_UID)) |
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1352 { |
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|
1353 seriesInstanceUid = map.GetValue(DICOM_TAG_SERIES_INSTANCE_UID).GetContent(); |
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1354 } |
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1355 currentType = ResourceType_Study; |
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1356 break; |
231 | 1357 |
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1358 case ResourceType_Instance: |
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1359 if (map.HasTag(DICOM_TAG_SOP_INSTANCE_UID)) |
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1360 { |
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|
1361 sopInstanceUid = map.GetValue(DICOM_TAG_SOP_INSTANCE_UID).GetContent(); |
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1362 } |
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1363 currentType = ResourceType_Series; |
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1364 break; |
231 | 1365 |
269
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1366 default: |
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1367 throw OrthancException(ErrorCode_InternalError); |
231 | 1368 } |
1369 | |
1370 // If we have not reached the Patient level, find the parent of | |
1371 // the current resource | |
1372 if (!done) | |
1373 { | |
1247 | 1374 bool ok = db_.LookupParent(currentId, currentId); |
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1375 assert(ok); |
231 | 1376 } |
1377 } | |
1378 | |
1246 | 1379 ExportedResource resource(-1, |
1380 type, | |
1381 publicId, | |
1382 remoteModality, | |
2475
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1383 SystemToolbox::GetNowIsoString(true /* use UTC time (not local time) */), |
1246 | 1384 patientId, |
1385 studyInstanceUid, | |
1386 seriesInstanceUid, | |
1387 sopInstanceUid); | |
1310
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1388 |
1247 | 1389 db_.LogExportedResource(resource); |
1310
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1390 transaction.Commit(0); |
231 | 1391 } |
1392 | |
1393 | |
1247 | 1394 void ServerIndex::GetExportedResources(Json::Value& target, |
231 | 1395 int64_t since, |
1396 unsigned int maxResults) | |
1397 { | |
1244 | 1398 std::list<ExportedResource> exported; |
1399 bool done; | |
1400 | |
1401 { | |
1402 boost::mutex::scoped_lock lock(mutex_); | |
1247 | 1403 db_.GetExportedResources(exported, done, since, maxResults); |
1244 | 1404 } |
1405 | |
1406 FormatLog(target, exported, "Exports", done, since); | |
231 | 1407 } |
237
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1408 |
1244 | 1409 |
1247 | 1410 void ServerIndex::GetLastExportedResource(Json::Value& target) |
237
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1411 { |
1244 | 1412 std::list<ExportedResource> exported; |
1413 | |
1414 { | |
1415 boost::mutex::scoped_lock lock(mutex_); | |
1247 | 1416 db_.GetLastExportedResource(exported); |
1244 | 1417 } |
1418 | |
1419 FormatLog(target, exported, "Exports", true, 0); | |
237
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1420 } |
268
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1421 |
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1422 |
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1423 bool ServerIndex::IsRecyclingNeeded(uint64_t instanceSize) |
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1424 { |
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1425 if (maximumStorageSize_ != 0) |
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1426 { |
3020
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1427 assert(maximumStorageSize_ >= instanceSize); |
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1428 |
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1429 if (db_.IsDiskSizeAbove(maximumStorageSize_ - instanceSize)) |
269
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1430 { |
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1431 return true; |
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1432 } |
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1433 } |
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1434 |
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1435 if (maximumPatients_ != 0) |
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1436 { |
1247 | 1437 uint64_t patientCount = db_.GetResourceCount(ResourceType_Patient); |
269
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1438 if (patientCount > maximumPatients_) |
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1439 { |
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1440 return true; |
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1441 } |
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1442 } |
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1443 |
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1444 return false; |
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1445 } |
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1446 |
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1447 |
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1448 void ServerIndex::Recycle(uint64_t instanceSize, |
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1449 const std::string& newPatientId) |
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1450 { |
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1451 if (!IsRecyclingNeeded(instanceSize)) |
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1452 { |
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1453 return; |
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1454 } |
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1455 |
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1456 // Check whether other DICOM instances from this patient are |
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1457 // already stored |
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1458 int64_t patientToAvoid; |
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1459 ResourceType type; |
1294 | 1460 bool hasPatientToAvoid = db_.LookupResource(patientToAvoid, type, newPatientId); |
268
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1461 |
269
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1462 if (hasPatientToAvoid && type != ResourceType_Patient) |
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1463 { |
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1464 throw OrthancException(ErrorCode_InternalError); |
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1465 } |
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1466 |
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1467 // Iteratively select patient to remove until there is enough |
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1468 // space in the DICOM store |
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1469 int64_t patientToRecycle; |
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1470 while (true) |
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1471 { |
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1472 // If other instances of this patient are already in the store, |
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1473 // we must avoid to recycle them |
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|
1474 bool ok = hasPatientToAvoid ? |
1247 | 1475 db_.SelectPatientToRecycle(patientToRecycle, patientToAvoid) : |
1476 db_.SelectPatientToRecycle(patientToRecycle); | |
269
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1477 |
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1478 if (!ok) |
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1479 { |
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1480 throw OrthancException(ErrorCode_FullStorage); |
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1481 } |
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1482 |
1331
77e129ba64e4
Prevent freeze on C-FIND if no DICOM tag is to be returned
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diff
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|
1483 VLOG(1) << "Recycling one patient"; |
1247 | 1484 db_.DeleteResource(patientToRecycle); |
269
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1485 |
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1486 if (!IsRecyclingNeeded(instanceSize)) |
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1487 { |
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1488 // OK, we're done |
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1489 break; |
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1490 } |
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1491 } |
268
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1492 } |
269
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1493 |
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1494 void ServerIndex::SetMaximumPatientCount(unsigned int count) |
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1495 { |
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1496 boost::mutex::scoped_lock lock(mutex_); |
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1497 maximumPatients_ = count; |
270
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1498 |
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1499 if (count == 0) |
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1500 { |
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1501 LOG(WARNING) << "No limit on the number of stored patients"; |
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1502 } |
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1503 else |
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1504 { |
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1505 LOG(WARNING) << "At most " << count << " patients will be stored"; |
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1506 } |
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1507 |
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1508 StandaloneRecycling(); |
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1509 } |
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1510 |
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1511 void ServerIndex::SetMaximumStorageSize(uint64_t size) |
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1512 { |
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1513 boost::mutex::scoped_lock lock(mutex_); |
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1514 maximumStorageSize_ = size; |
270
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1515 |
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1516 if (size == 0) |
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1517 { |
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1518 LOG(WARNING) << "No limit on the size of the storage area"; |
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1519 } |
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1520 else |
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1521 { |
440
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|
1522 LOG(WARNING) << "At most " << (size / MEGA_BYTES) << "MB will be used for the storage area"; |
270
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1523 } |
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1524 |
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1525 StandaloneRecycling(); |
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1526 } |
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1527 |
2825
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|
1528 void ServerIndex::SetOverwriteInstances(bool overwrite) |
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New configuration option "OverwriteInstances" to choose how duplicate SOPInstanceUID are handled
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|
1529 { |
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New configuration option "OverwriteInstances" to choose how duplicate SOPInstanceUID are handled
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|
1530 boost::mutex::scoped_lock lock(mutex_); |
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|
1531 overwrite_ = overwrite; |
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|
1532 } |
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|
1533 |
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1534 |
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1535 void ServerIndex::StandaloneRecycling() |
269
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1536 { |
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1537 // WARNING: No mutex here, do not include this as a public method |
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1538 Transaction t(*this); |
269
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1539 Recycle(0, ""); |
278
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1540 t.Commit(0); |
269
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1541 } |
272
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1542 |
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1543 |
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1544 bool ServerIndex::IsProtectedPatient(const std::string& publicId) |
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1545 { |
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1546 boost::mutex::scoped_lock lock(mutex_); |
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1547 |
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1548 // Lookup for the requested resource |
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1549 int64_t id; |
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1550 ResourceType type; |
1294 | 1551 if (!db_.LookupResource(id, type, publicId) || |
272
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1552 type != ResourceType_Patient) |
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1553 { |
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1554 throw OrthancException(ErrorCode_ParameterOutOfRange); |
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1555 } |
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1556 |
1247 | 1557 return db_.IsProtectedPatient(id); |
272
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1558 } |
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|
1559 |
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1560 |
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1561 void ServerIndex::SetProtectedPatient(const std::string& publicId, |
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1562 bool isProtected) |
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1563 { |
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1564 boost::mutex::scoped_lock lock(mutex_); |
1310
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1565 Transaction transaction(*this); |
272
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1566 |
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1567 // Lookup for the requested resource |
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1568 int64_t id; |
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1569 ResourceType type; |
1294 | 1570 if (!db_.LookupResource(id, type, publicId) || |
272
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1571 type != ResourceType_Patient) |
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1572 { |
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1573 throw OrthancException(ErrorCode_ParameterOutOfRange); |
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1574 } |
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1575 |
1247 | 1576 db_.SetProtectedPatient(id, isProtected); |
1310
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1577 transaction.Commit(0); |
272
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1578 |
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1579 if (isProtected) |
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1580 LOG(INFO) << "Patient " << publicId << " has been protected"; |
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1581 else |
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1582 LOG(INFO) << "Patient " << publicId << " has been unprotected"; |
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1583 } |
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1584 |
304 | 1585 |
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1586 void ServerIndex::GetChildren(std::list<std::string>& result, |
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1587 const std::string& publicId) |
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1588 { |
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1589 result.clear(); |
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1590 |
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|
1591 boost::mutex::scoped_lock lock(mutex_); |
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1592 |
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1593 ResourceType type; |
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|
1594 int64_t resource; |
1294 | 1595 if (!db_.LookupResource(resource, type, publicId)) |
714
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1596 { |
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1597 throw OrthancException(ErrorCode_UnknownResource); |
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1598 } |
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1599 |
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1600 if (type == ResourceType_Instance) |
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1601 { |
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1602 // An instance cannot have a child |
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1603 throw OrthancException(ErrorCode_BadParameterType); |
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1604 } |
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1605 |
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1606 std::list<int64_t> tmp; |
1247 | 1607 db_.GetChildrenInternalId(tmp, resource); |
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1608 |
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1609 for (std::list<int64_t>::const_iterator |
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1610 it = tmp.begin(); it != tmp.end(); ++it) |
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1611 { |
1247 | 1612 result.push_back(db_.GetPublicId(*it)); |
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1613 } |
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1614 } |
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1615 |
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1616 |
304 | 1617 void ServerIndex::GetChildInstances(std::list<std::string>& result, |
1618 const std::string& publicId) | |
1619 { | |
1620 result.clear(); | |
1621 | |
1622 boost::mutex::scoped_lock lock(mutex_); | |
1623 | |
1624 ResourceType type; | |
1625 int64_t top; | |
1294 | 1626 if (!db_.LookupResource(top, type, publicId)) |
304 | 1627 { |
1628 throw OrthancException(ErrorCode_UnknownResource); | |
1629 } | |
1630 | |
1631 if (type == ResourceType_Instance) | |
1632 { | |
1633 // The resource is already an instance: Do not go down the hierarchy | |
1634 result.push_back(publicId); | |
1635 return; | |
1636 } | |
1637 | |
1638 std::stack<int64_t> toExplore; | |
1639 toExplore.push(top); | |
1640 | |
1641 std::list<int64_t> tmp; | |
1642 | |
1643 while (!toExplore.empty()) | |
1644 { | |
1645 // Get the internal ID of the current resource | |
1646 int64_t resource = toExplore.top(); | |
1647 toExplore.pop(); | |
1648 | |
1247 | 1649 if (db_.GetResourceType(resource) == ResourceType_Instance) |
304 | 1650 { |
1247 | 1651 result.push_back(db_.GetPublicId(resource)); |
304 | 1652 } |
1653 else | |
1654 { | |
1655 // Tag all the children of this resource as to be explored | |
1247 | 1656 db_.GetChildrenInternalId(tmp, resource); |
304 | 1657 for (std::list<int64_t>::const_iterator |
656 | 1658 it = tmp.begin(); it != tmp.end(); ++it) |
304 | 1659 { |
1660 toExplore.push(*it); | |
1661 } | |
1662 } | |
1663 } | |
1664 } | |
1665 | |
306
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1666 |
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1667 void ServerIndex::SetMetadata(const std::string& publicId, |
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1668 MetadataType type, |
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1669 const std::string& value) |
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1670 { |
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1671 boost::mutex::scoped_lock lock(mutex_); |
1773
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1672 Transaction t(*this); |
306
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1673 |
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1674 ResourceType rtype; |
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1675 int64_t id; |
1294 | 1676 if (!db_.LookupResource(id, rtype, publicId)) |
306
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1677 { |
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1678 throw OrthancException(ErrorCode_UnknownResource); |
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1679 } |
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1680 |
1247 | 1681 db_.SetMetadata(id, type, value); |
1773
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1682 |
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1683 if (IsUserMetadata(type)) |
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1684 { |
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1685 LogChange(id, ChangeType_UpdatedMetadata, rtype, publicId); |
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1686 } |
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1687 |
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1688 t.Commit(0); |
306
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1689 } |
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1690 |
438 | 1691 |
1692 void ServerIndex::DeleteMetadata(const std::string& publicId, | |
1693 MetadataType type) | |
1694 { | |
1695 boost::mutex::scoped_lock lock(mutex_); | |
1773
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1696 Transaction t(*this); |
438 | 1697 |
1698 ResourceType rtype; | |
1699 int64_t id; | |
1294 | 1700 if (!db_.LookupResource(id, rtype, publicId)) |
438 | 1701 { |
1702 throw OrthancException(ErrorCode_UnknownResource); | |
1703 } | |
1704 | |
1247 | 1705 db_.DeleteMetadata(id, type); |
1773
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New UpdatedAttachment and UpdatedMetadata events in plugins
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1706 |
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|
1707 if (IsUserMetadata(type)) |
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diff
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|
1708 { |
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diff
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|
1709 LogChange(id, ChangeType_UpdatedMetadata, rtype, publicId); |
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|
1710 } |
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|
1711 |
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|
1712 t.Commit(0); |
438 | 1713 } |
1714 | |
1715 | |
306
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1716 bool ServerIndex::LookupMetadata(std::string& target, |
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1717 const std::string& publicId, |
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1718 MetadataType type) |
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1719 { |
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1720 boost::mutex::scoped_lock lock(mutex_); |
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1721 |
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1722 ResourceType rtype; |
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1723 int64_t id; |
1294 | 1724 if (!db_.LookupResource(id, rtype, publicId)) |
306
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1725 { |
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1726 throw OrthancException(ErrorCode_UnknownResource); |
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1727 } |
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1728 |
1247 | 1729 return db_.LookupMetadata(target, id, type); |
306
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1730 } |
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1731 |
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1732 |
739 | 1733 void ServerIndex::ListAvailableMetadata(std::list<MetadataType>& target, |
436
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1734 const std::string& publicId) |
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1735 { |
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1736 boost::mutex::scoped_lock lock(mutex_); |
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1737 |
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|
1738 ResourceType rtype; |
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|
1739 int64_t id; |
1294 | 1740 if (!db_.LookupResource(id, rtype, publicId)) |
436
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|
1741 { |
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|
1742 throw OrthancException(ErrorCode_UnknownResource); |
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|
1743 } |
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diff
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|
1744 |
1247 | 1745 db_.ListAvailableMetadata(target, id); |
436
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|
1746 } |
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|
1747 |
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|
1748 |
697
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diff
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|
1749 void ServerIndex::ListAvailableAttachments(std::list<FileContentType>& target, |
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|
1750 const std::string& publicId, |
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|
1751 ResourceType expectedType) |
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|
1752 { |
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diff
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|
1753 boost::mutex::scoped_lock lock(mutex_); |
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|
1754 |
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|
1755 ResourceType type; |
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|
1756 int64_t id; |
1294 | 1757 if (!db_.LookupResource(id, type, publicId) || |
697
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|
1758 expectedType != type) |
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|
1759 { |
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|
1760 throw OrthancException(ErrorCode_UnknownResource); |
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|
1761 } |
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|
1762 |
1247 | 1763 db_.ListAvailableAttachments(target, id); |
697
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1764 } |
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1765 |
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1766 |
306
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1767 bool ServerIndex::LookupParent(std::string& target, |
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1768 const std::string& publicId) |
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1769 { |
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1770 boost::mutex::scoped_lock lock(mutex_); |
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1771 |
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1772 ResourceType type; |
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1773 int64_t id; |
1294 | 1774 if (!db_.LookupResource(id, type, publicId)) |
306
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1775 { |
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1776 throw OrthancException(ErrorCode_UnknownResource); |
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1777 } |
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1778 |
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1779 int64_t parentId; |
1247 | 1780 if (db_.LookupParent(parentId, id)) |
306
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1781 { |
1247 | 1782 target = db_.GetPublicId(parentId); |
306
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1783 return true; |
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1784 } |
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1785 else |
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1786 { |
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1787 return false; |
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1788 } |
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1789 } |
310 | 1790 |
1791 | |
1792 uint64_t ServerIndex::IncrementGlobalSequence(GlobalProperty sequence) | |
1793 { | |
1794 boost::mutex::scoped_lock lock(mutex_); | |
1310
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|
1795 Transaction transaction(*this); |
311 | 1796 |
1237 | 1797 uint64_t seq = IncrementGlobalSequenceInternal(sequence); |
1310
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1798 transaction.Commit(0); |
311 | 1799 |
1800 return seq; | |
310 | 1801 } |
315 | 1802 |
1803 | |
1804 | |
1805 void ServerIndex::LogChange(ChangeType changeType, | |
1806 const std::string& publicId) | |
1807 { | |
1808 boost::mutex::scoped_lock lock(mutex_); | |
1310
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|
1809 Transaction transaction(*this); |
315 | 1810 |
1811 int64_t id; | |
1812 ResourceType type; | |
1294 | 1813 if (!db_.LookupResource(id, type, publicId)) |
315 | 1814 { |
1815 throw OrthancException(ErrorCode_UnknownResource); | |
1816 } | |
1817 | |
1237 | 1818 LogChange(id, changeType, type, publicId); |
1310
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1819 transaction.Commit(0); |
315 | 1820 } |
413
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1821 |
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1822 |
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1823 void ServerIndex::DeleteChanges() |
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1824 { |
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1825 boost::mutex::scoped_lock lock(mutex_); |
1286 | 1826 db_.ClearChanges(); |
413
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1827 } |
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1828 |
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1829 void ServerIndex::DeleteExportedResources() |
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1830 { |
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|
1831 boost::mutex::scoped_lock lock(mutex_); |
1286 | 1832 db_.ClearExportedResources(); |
413
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1833 } |
440
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1834 |
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1835 |
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|
1836 void ServerIndex::GetStatisticsInternal(/* out */ uint64_t& diskSize, |
646 | 1837 /* out */ uint64_t& uncompressedSize, |
1838 /* out */ unsigned int& countStudies, | |
1839 /* out */ unsigned int& countSeries, | |
1840 /* out */ unsigned int& countInstances, | |
2987
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1841 /* out */ uint64_t& dicomDiskSize, |
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1842 /* out */ uint64_t& dicomUncompressedSize, |
646 | 1843 /* in */ int64_t id, |
1844 /* in */ ResourceType type) | |
440
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1845 { |
646 | 1846 std::stack<int64_t> toExplore; |
1847 toExplore.push(id); | |
440
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1848 |
646 | 1849 countInstances = 0; |
1850 countSeries = 0; | |
1851 countStudies = 0; | |
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1852 diskSize = 0; |
646 | 1853 uncompressedSize = 0; |
2987
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1854 dicomDiskSize = 0; |
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1855 dicomUncompressedSize = 0; |
440
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1856 |
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1857 while (!toExplore.empty()) |
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1858 { |
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1859 // Get the internal ID of the current resource |
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1860 int64_t resource = toExplore.top(); |
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1861 toExplore.pop(); |
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1862 |
1247 | 1863 ResourceType thisType = db_.GetResourceType(resource); |
440
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1864 |
702
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1865 std::list<FileContentType> f; |
1247 | 1866 db_.ListAvailableAttachments(f, resource); |
702
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1867 |
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|
1868 for (std::list<FileContentType>::const_iterator |
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1869 it = f.begin(); it != f.end(); ++it) |
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1870 { |
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1871 FileInfo attachment; |
1247 | 1872 if (db_.LookupAttachment(attachment, resource, *it)) |
702
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1873 { |
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1874 if (attachment.GetContentType() == FileContentType_Dicom) |
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1875 { |
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1876 dicomDiskSize += attachment.GetCompressedSize(); |
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1877 dicomUncompressedSize += attachment.GetUncompressedSize(); |
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1878 } |
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1879 |
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1880 diskSize += attachment.GetCompressedSize(); |
702
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1881 uncompressedSize += attachment.GetUncompressedSize(); |
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1882 } |
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1883 } |
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1884 |
440
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1885 if (thisType == ResourceType_Instance) |
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1886 { |
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1887 countInstances++; |
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1888 } |
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1889 else |
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1890 { |
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1891 switch (thisType) |
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1892 { |
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1893 case ResourceType_Study: |
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1894 countStudies++; |
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1895 break; |
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1896 |
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1897 case ResourceType_Series: |
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1898 countSeries++; |
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1899 break; |
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1900 |
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1901 default: |
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1902 break; |
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1903 } |
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1904 |
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1905 // Tag all the children of this resource as to be explored |
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1906 std::list<int64_t> tmp; |
1247 | 1907 db_.GetChildrenInternalId(tmp, resource); |
440
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1908 for (std::list<int64_t>::const_iterator |
656 | 1909 it = tmp.begin(); it != tmp.end(); ++it) |
440
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1910 { |
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1911 toExplore.push(*it); |
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1912 } |
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1913 } |
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1914 } |
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1915 |
646 | 1916 if (countStudies == 0) |
1917 { | |
1918 countStudies = 1; | |
1919 } | |
1920 | |
1921 if (countSeries == 0) | |
1922 { | |
1923 countSeries = 1; | |
1924 } | |
1925 } | |
1926 | |
1927 | |
1928 | |
1929 void ServerIndex::GetStatistics(Json::Value& target, | |
1930 const std::string& publicId) | |
1931 { | |
1932 boost::mutex::scoped_lock lock(mutex_); | |
1933 | |
1934 ResourceType type; | |
1935 int64_t top; | |
1294 | 1936 if (!db_.LookupResource(top, type, publicId)) |
646 | 1937 { |
1938 throw OrthancException(ErrorCode_UnknownResource); | |
1939 } | |
1940 | |
1941 uint64_t uncompressedSize; | |
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1942 uint64_t diskSize; |
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1943 uint64_t dicomUncompressedSize; |
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1944 uint64_t dicomDiskSize; |
646 | 1945 unsigned int countStudies; |
1946 unsigned int countSeries; | |
1947 unsigned int countInstances; | |
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1948 GetStatisticsInternal(diskSize, uncompressedSize, countStudies, |
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1949 countSeries, countInstances, dicomDiskSize, dicomUncompressedSize, top, type); |
646 | 1950 |
440
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1951 target = Json::objectValue; |
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1952 target["DiskSize"] = boost::lexical_cast<std::string>(diskSize); |
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1953 target["DiskSizeMB"] = static_cast<unsigned int>(diskSize / MEGA_BYTES); |
440
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1954 target["UncompressedSize"] = boost::lexical_cast<std::string>(uncompressedSize); |
1310
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1955 target["UncompressedSizeMB"] = static_cast<unsigned int>(uncompressedSize / MEGA_BYTES); |
440
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1956 |
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1957 target["DicomDiskSize"] = boost::lexical_cast<std::string>(dicomDiskSize); |
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1958 target["DicomDiskSizeMB"] = static_cast<unsigned int>(dicomDiskSize / MEGA_BYTES); |
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1959 target["DicomUncompressedSize"] = boost::lexical_cast<std::string>(dicomUncompressedSize); |
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1960 target["DicomUncompressedSizeMB"] = static_cast<unsigned int>(dicomUncompressedSize / MEGA_BYTES); |
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1961 |
440
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1962 switch (type) |
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1963 { |
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1964 // Do NOT add "break" below this point! |
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1965 case ResourceType_Patient: |
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1966 target["CountStudies"] = countStudies; |
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1967 |
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1968 case ResourceType_Study: |
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1969 target["CountSeries"] = countSeries; |
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1970 |
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1971 case ResourceType_Series: |
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1972 target["CountInstances"] = countInstances; |
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1973 |
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1974 case ResourceType_Instance: |
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1975 default: |
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1976 break; |
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|
1977 } |
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|
1978 } |
511
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|
1979 |
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|
1980 |
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1981 void ServerIndex::GetStatistics(/* out */ uint64_t& diskSize, |
646 | 1982 /* out */ uint64_t& uncompressedSize, |
1983 /* out */ unsigned int& countStudies, | |
1984 /* out */ unsigned int& countSeries, | |
1985 /* out */ unsigned int& countInstances, | |
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1986 /* out */ uint64_t& dicomDiskSize, |
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1987 /* out */ uint64_t& dicomUncompressedSize, |
646 | 1988 const std::string& publicId) |
1989 { | |
1990 boost::mutex::scoped_lock lock(mutex_); | |
1991 | |
1992 ResourceType type; | |
1993 int64_t top; | |
1294 | 1994 if (!db_.LookupResource(top, type, publicId)) |
646 | 1995 { |
1996 throw OrthancException(ErrorCode_UnknownResource); | |
1997 } | |
1998 | |
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|
1999 GetStatisticsInternal(diskSize, uncompressedSize, countStudies, |
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|
2000 countSeries, countInstances, dicomDiskSize, |
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|
2001 dicomUncompressedSize, top, type); |
646 | 2002 } |
2003 | |
2004 | |
2665
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changeset
|
2005 void ServerIndex::UnstableResourcesMonitorThread(ServerIndex* that, |
389d050a2e66
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changeset
|
2006 unsigned int threadSleep) |
511
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changeset
|
2007 { |
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|
2008 int stableAge; |
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|
2009 |
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changeset
|
2010 { |
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changeset
|
2011 OrthancConfiguration::ReaderLock lock; |
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2012 stableAge = lock.GetConfiguration().GetUnsignedIntegerParameter("StableAge", 60); |
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2013 } |
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|
2014 |
511
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2015 if (stableAge <= 0) |
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2016 { |
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|
2017 stableAge = 60; |
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2018 } |
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2019 |
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2020 LOG(INFO) << "Starting the monitor for stable resources (stable age = " << stableAge << ")"; |
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2021 |
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2022 while (!that->done_) |
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2023 { |
2665
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2024 // Check for stable resources each few seconds |
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2025 boost::this_thread::sleep(boost::posix_time::milliseconds(threadSleep)); |
511
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2026 |
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2027 boost::mutex::scoped_lock lock(that->mutex_); |
513 | 2028 |
511
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2029 while (!that->unstableResources_.IsEmpty() && |
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2030 that->unstableResources_.GetOldestPayload().GetAge() > static_cast<unsigned int>(stableAge)) |
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2031 { |
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2032 // This DICOM resource has not received any new instance for |
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2033 // some time. It can be considered as stable. |
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2034 |
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2035 UnstableResourcePayload payload; |
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2036 int64_t id = that->unstableResources_.RemoveOldest(payload); |
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2037 |
513 | 2038 // Ensure that the resource is still existing before logging the change |
1247 | 2039 if (that->db_.IsExistingResource(id)) |
511
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2040 { |
1177
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2041 switch (payload.GetResourceType()) |
513 | 2042 { |
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2043 case ResourceType_Patient: |
1237 | 2044 that->LogChange(id, ChangeType_StablePatient, ResourceType_Patient, payload.GetPublicId()); |
513 | 2045 break; |
511
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2046 |
1177
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2047 case ResourceType_Study: |
1237 | 2048 that->LogChange(id, ChangeType_StableStudy, ResourceType_Study, payload.GetPublicId()); |
513 | 2049 break; |
511
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2050 |
1177
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2051 case ResourceType_Series: |
1237 | 2052 that->LogChange(id, ChangeType_StableSeries, ResourceType_Series, payload.GetPublicId()); |
513 | 2053 break; |
2054 | |
2055 default: | |
2056 throw OrthancException(ErrorCode_InternalError); | |
2057 } | |
2058 | |
2059 //LOG(INFO) << "Stable resource: " << EnumerationToString(payload.type_) << " " << id; | |
511
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2060 } |
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2061 } |
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2062 } |
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2063 |
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2064 LOG(INFO) << "Closing the monitor thread for stable resources"; |
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2065 } |
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2066 |
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|
2067 |
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|
2068 void ServerIndex::MarkAsUnstable(int64_t id, |
1177
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2069 Orthanc::ResourceType type, |
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2070 const std::string& publicId) |
511
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2071 { |
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2072 // WARNING: Before calling this method, "mutex_" must be locked. |
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2073 |
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2074 assert(type == Orthanc::ResourceType_Patient || |
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2075 type == Orthanc::ResourceType_Study || |
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|
2076 type == Orthanc::ResourceType_Series); |
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2077 |
1177
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2078 UnstableResourcePayload payload(type, publicId); |
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2079 unstableResources_.AddOrMakeMostRecent(id, payload); |
511
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|
2080 //LOG(INFO) << "Unstable resource: " << EnumerationToString(type) << " " << id; |
1189
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|
2081 |
1237 | 2082 LogChange(id, ChangeType_NewChildInstance, type, publicId); |
511
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2083 } |
521 | 2084 |
2085 | |
2086 | |
3034
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3033
diff
changeset
|
2087 void ServerIndex::LookupIdentifierExact(std::vector<std::string>& result, |
1728
4941494b5dd8
rename LookupIdentifier as LookupIdentifierExact
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1727
diff
changeset
|
2088 ResourceType level, |
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|
2089 const DicomTag& tag, |
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|
2090 const std::string& value) |
615 | 2091 { |
1727 | 2092 assert((level == ResourceType_Patient && tag == DICOM_TAG_PATIENT_ID) || |
2093 (level == ResourceType_Study && tag == DICOM_TAG_STUDY_INSTANCE_UID) || | |
2094 (level == ResourceType_Study && tag == DICOM_TAG_ACCESSION_NUMBER) || | |
2095 (level == ResourceType_Series && tag == DICOM_TAG_SERIES_INSTANCE_UID) || | |
2096 (level == ResourceType_Instance && tag == DICOM_TAG_SOP_INSTANCE_UID)); | |
1725 | 2097 |
615 | 2098 result.clear(); |
2099 | |
3034
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|
2100 DicomTagConstraint c(tag, ConstraintType_Equal, value, true, true); |
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|
2101 |
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|
2102 std::vector<DatabaseConstraint> query; |
3073
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refactoring to reuse DatabaseConstraint in separate projects
Sebastien Jodogne <s.jodogne@gmail.com>
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3061
diff
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|
2103 query.push_back(c.ConvertToDatabaseConstraint(level, DicomTagType_Identifier)); |
3034
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|
2104 |
3075
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IDatabaseWrapper::ApplyLookupResources now returns lists
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|
2105 std::list<std::string> tmp; |
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IDatabaseWrapper::ApplyLookupResources now returns lists
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|
2106 |
3034
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changeset
|
2107 { |
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diff
changeset
|
2108 boost::mutex::scoped_lock lock(mutex_); |
3075
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IDatabaseWrapper::ApplyLookupResources now returns lists
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changeset
|
2109 db_.ApplyLookupResources(tmp, NULL, query, level, 0); |
3034
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|
2110 } |
3075
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|
2111 |
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|
2112 CopyListToVector(result, tmp); |
615 | 2113 } |
2114 | |
2115 | |
699
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|
2116 StoreStatus ServerIndex::AddAttachment(const FileInfo& attachment, |
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|
2117 const std::string& publicId) |
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2118 { |
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|
2119 boost::mutex::scoped_lock lock(mutex_); |
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2120 |
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2121 Transaction t(*this); |
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2122 |
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|
2123 ResourceType resourceType; |
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2124 int64_t resourceId; |
1294 | 2125 if (!db_.LookupResource(resourceId, resourceType, publicId)) |
699
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2126 { |
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|
2127 return StoreStatus_Failure; // Inexistent resource |
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|
2128 } |
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2129 |
704
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|
2130 // Remove possible previous attachment |
1247 | 2131 db_.DeleteAttachment(resourceId, attachment.GetContentType()); |
699
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2132 |
704
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|
2133 // Locate the patient of the target resource |
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|
2134 int64_t patientId = resourceId; |
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changeset
|
2135 for (;;) |
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|
2136 { |
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|
2137 int64_t parent; |
1247 | 2138 if (db_.LookupParent(parent, patientId)) |
704
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|
2139 { |
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changeset
|
2140 // We have not reached the patient level yet |
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|
2141 patientId = parent; |
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|
2142 } |
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changeset
|
2143 else |
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changeset
|
2144 { |
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|
2145 // We have reached the patient level |
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changeset
|
2146 break; |
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changeset
|
2147 } |
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changeset
|
2148 } |
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changeset
|
2149 |
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changeset
|
2150 // Possibly apply the recycling mechanism while preserving this patient |
1247 | 2151 assert(db_.GetResourceType(patientId) == ResourceType_Patient); |
2152 Recycle(attachment.GetCompressedSize(), db_.GetPublicId(patientId)); | |
704
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|
2153 |
1247 | 2154 db_.AddAttachment(resourceId, attachment); |
699
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2155 |
1773
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New UpdatedAttachment and UpdatedMetadata events in plugins
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changeset
|
2156 if (IsUserContentType(attachment.GetContentType())) |
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|
2157 { |
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changeset
|
2158 LogChange(resourceId, ChangeType_UpdatedAttachment, resourceType, publicId); |
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|
2159 } |
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|
2160 |
699
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changeset
|
2161 t.Commit(attachment.GetCompressedSize()); |
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|
2162 |
2929e17f8447
add attachments to resources
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
697
diff
changeset
|
2163 return StoreStatus_Success; |
2929e17f8447
add attachments to resources
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
697
diff
changeset
|
2164 } |
2929e17f8447
add attachments to resources
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
697
diff
changeset
|
2165 |
702
7592a48e97e4
delete custom attachment
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
701
diff
changeset
|
2166 |
7592a48e97e4
delete custom attachment
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
701
diff
changeset
|
2167 void ServerIndex::DeleteAttachment(const std::string& publicId, |
7592a48e97e4
delete custom attachment
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
701
diff
changeset
|
2168 FileContentType type) |
7592a48e97e4
delete custom attachment
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
701
diff
changeset
|
2169 { |
7592a48e97e4
delete custom attachment
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
701
diff
changeset
|
2170 boost::mutex::scoped_lock lock(mutex_); |
7592a48e97e4
delete custom attachment
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
701
diff
changeset
|
2171 Transaction t(*this); |
7592a48e97e4
delete custom attachment
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
701
diff
changeset
|
2172 |
7592a48e97e4
delete custom attachment
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
701
diff
changeset
|
2173 ResourceType rtype; |
7592a48e97e4
delete custom attachment
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
701
diff
changeset
|
2174 int64_t id; |
1294 | 2175 if (!db_.LookupResource(id, rtype, publicId)) |
702
7592a48e97e4
delete custom attachment
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
701
diff
changeset
|
2176 { |
7592a48e97e4
delete custom attachment
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
701
diff
changeset
|
2177 throw OrthancException(ErrorCode_UnknownResource); |
7592a48e97e4
delete custom attachment
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
701
diff
changeset
|
2178 } |
7592a48e97e4
delete custom attachment
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
701
diff
changeset
|
2179 |
1247 | 2180 db_.DeleteAttachment(id, type); |
702
7592a48e97e4
delete custom attachment
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
701
diff
changeset
|
2181 |
1773
613df4362575
New UpdatedAttachment and UpdatedMetadata events in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1757
diff
changeset
|
2182 if (IsUserContentType(type)) |
613df4362575
New UpdatedAttachment and UpdatedMetadata events in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1757
diff
changeset
|
2183 { |
613df4362575
New UpdatedAttachment and UpdatedMetadata events in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1757
diff
changeset
|
2184 LogChange(id, ChangeType_UpdatedAttachment, rtype, publicId); |
613df4362575
New UpdatedAttachment and UpdatedMetadata events in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1757
diff
changeset
|
2185 } |
613df4362575
New UpdatedAttachment and UpdatedMetadata events in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1757
diff
changeset
|
2186 |
702
7592a48e97e4
delete custom attachment
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
701
diff
changeset
|
2187 t.Commit(0); |
7592a48e97e4
delete custom attachment
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
701
diff
changeset
|
2188 } |
7592a48e97e4
delete custom attachment
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
701
diff
changeset
|
2189 |
7592a48e97e4
delete custom attachment
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
701
diff
changeset
|
2190 |
1002
b067017a8a5b
anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
831
diff
changeset
|
2191 bool ServerIndex::GetMetadata(Json::Value& target, |
b067017a8a5b
anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
831
diff
changeset
|
2192 const std::string& publicId) |
b067017a8a5b
anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
831
diff
changeset
|
2193 { |
b067017a8a5b
anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
831
diff
changeset
|
2194 boost::mutex::scoped_lock lock(mutex_); |
b067017a8a5b
anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
831
diff
changeset
|
2195 |
b067017a8a5b
anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
831
diff
changeset
|
2196 target = Json::objectValue; |
b067017a8a5b
anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
831
diff
changeset
|
2197 |
b067017a8a5b
anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
831
diff
changeset
|
2198 ResourceType type; |
b067017a8a5b
anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
831
diff
changeset
|
2199 int64_t id; |
1294 | 2200 if (!db_.LookupResource(id, type, publicId)) |
1002
b067017a8a5b
anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
831
diff
changeset
|
2201 { |
b067017a8a5b
anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
831
diff
changeset
|
2202 return false; |
b067017a8a5b
anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
831
diff
changeset
|
2203 } |
b067017a8a5b
anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
831
diff
changeset
|
2204 |
b067017a8a5b
anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
831
diff
changeset
|
2205 std::list<MetadataType> metadata; |
1247 | 2206 db_.ListAvailableMetadata(metadata, id); |
1002
b067017a8a5b
anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
831
diff
changeset
|
2207 |
b067017a8a5b
anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
831
diff
changeset
|
2208 for (std::list<MetadataType>::const_iterator |
1304 | 2209 it = metadata.begin(); it != metadata.end(); ++it) |
1002
b067017a8a5b
anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
831
diff
changeset
|
2210 { |
b067017a8a5b
anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
831
diff
changeset
|
2211 std::string key = EnumerationToString(*it); |
1238 | 2212 |
2213 std::string value; | |
1247 | 2214 if (!db_.LookupMetadata(value, id, *it)) |
1238 | 2215 { |
2216 value.clear(); | |
2217 } | |
2218 | |
1002
b067017a8a5b
anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
831
diff
changeset
|
2219 target[key] = value; |
b067017a8a5b
anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
831
diff
changeset
|
2220 } |
b067017a8a5b
anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
831
diff
changeset
|
2221 |
b067017a8a5b
anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
831
diff
changeset
|
2222 return true; |
b067017a8a5b
anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
831
diff
changeset
|
2223 } |
1218
efece308018e
report database version in /system
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1198
diff
changeset
|
2224 |
efece308018e
report database version in /system
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1198
diff
changeset
|
2225 |
1249
40725595aaf0
Plugins can get/set global properties to save their configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1247
diff
changeset
|
2226 void ServerIndex::SetGlobalProperty(GlobalProperty property, |
40725595aaf0
Plugins can get/set global properties to save their configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1247
diff
changeset
|
2227 const std::string& value) |
40725595aaf0
Plugins can get/set global properties to save their configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1247
diff
changeset
|
2228 { |
40725595aaf0
Plugins can get/set global properties to save their configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1247
diff
changeset
|
2229 boost::mutex::scoped_lock lock(mutex_); |
40725595aaf0
Plugins can get/set global properties to save their configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1247
diff
changeset
|
2230 db_.SetGlobalProperty(property, value); |
40725595aaf0
Plugins can get/set global properties to save their configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1247
diff
changeset
|
2231 } |
40725595aaf0
Plugins can get/set global properties to save their configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1247
diff
changeset
|
2232 |
40725595aaf0
Plugins can get/set global properties to save their configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1247
diff
changeset
|
2233 |
2668
d26dd081df97
saving jobs engine on exit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2665
diff
changeset
|
2234 bool ServerIndex::LookupGlobalProperty(std::string& value, |
d26dd081df97
saving jobs engine on exit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2665
diff
changeset
|
2235 GlobalProperty property) |
d26dd081df97
saving jobs engine on exit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2665
diff
changeset
|
2236 { |
d26dd081df97
saving jobs engine on exit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2665
diff
changeset
|
2237 boost::mutex::scoped_lock lock(mutex_); |
d26dd081df97
saving jobs engine on exit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2665
diff
changeset
|
2238 return db_.LookupGlobalProperty(value, property); |
d26dd081df97
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2665
diff
changeset
|
2239 } |
d26dd081df97
saving jobs engine on exit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2665
diff
changeset
|
2240 |
d26dd081df97
saving jobs engine on exit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2665
diff
changeset
|
2241 |
1218
efece308018e
report database version in /system
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1198
diff
changeset
|
2242 std::string ServerIndex::GetGlobalProperty(GlobalProperty property, |
efece308018e
report database version in /system
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1198
diff
changeset
|
2243 const std::string& defaultValue) |
efece308018e
report database version in /system
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1198
diff
changeset
|
2244 { |
1239 | 2245 std::string value; |
2668
d26dd081df97
saving jobs engine on exit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2665
diff
changeset
|
2246 |
d26dd081df97
saving jobs engine on exit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2665
diff
changeset
|
2247 if (LookupGlobalProperty(value, property)) |
1239 | 2248 { |
2249 return value; | |
2250 } | |
2251 else | |
2252 { | |
2253 return defaultValue; | |
2254 } | |
1218
efece308018e
report database version in /system
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1198
diff
changeset
|
2255 } |
efece308018e
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1198
diff
changeset
|
2256 |
1352 | 2257 |
2258 bool ServerIndex::GetMainDicomTags(DicomMap& result, | |
2259 const std::string& publicId, | |
1677
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2260 ResourceType expectedType, |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1676
diff
changeset
|
2261 ResourceType levelOfInterest) |
1352 | 2262 { |
1677
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2263 // Yes, the following test could be shortened, but we wish to make it as clear as possible |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2264 if (!(expectedType == ResourceType_Patient && levelOfInterest == ResourceType_Patient) && |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2265 !(expectedType == ResourceType_Study && levelOfInterest == ResourceType_Patient) && |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1676
diff
changeset
|
2266 !(expectedType == ResourceType_Study && levelOfInterest == ResourceType_Study) && |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2267 !(expectedType == ResourceType_Series && levelOfInterest == ResourceType_Series) && |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1676
diff
changeset
|
2268 !(expectedType == ResourceType_Instance && levelOfInterest == ResourceType_Instance)) |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2269 { |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
2270 throw OrthancException(ErrorCode_ParameterOutOfRange); |
a903d57d9f0c
adaptation of search with patient tags at study level
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diff
changeset
|
2271 } |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2272 |
1352 | 2273 result.Clear(); |
2274 | |
2275 boost::mutex::scoped_lock lock(mutex_); | |
2276 | |
2277 // Lookup for the requested resource | |
2278 int64_t id; | |
2279 ResourceType type; | |
2280 if (!db_.LookupResource(id, type, publicId) || | |
2281 type != expectedType) | |
2282 { | |
2283 return false; | |
2284 } | |
1677
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
2285 |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
2286 if (type == ResourceType_Study) |
a903d57d9f0c
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2287 { |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2288 DicomMap tmp; |
a903d57d9f0c
adaptation of search with patient tags at study level
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parents:
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diff
changeset
|
2289 db_.GetMainDicomTags(tmp, id); |
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parents:
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diff
changeset
|
2290 |
a903d57d9f0c
adaptation of search with patient tags at study level
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diff
changeset
|
2291 switch (levelOfInterest) |
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adaptation of search with patient tags at study level
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diff
changeset
|
2292 { |
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adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
2293 case ResourceType_Patient: |
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adaptation of search with patient tags at study level
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parents:
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diff
changeset
|
2294 tmp.ExtractPatientInformation(result); |
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
2295 return true; |
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adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
2296 |
a903d57d9f0c
adaptation of search with patient tags at study level
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parents:
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diff
changeset
|
2297 case ResourceType_Study: |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2298 tmp.ExtractStudyInformation(result); |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
2299 return true; |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
2300 |
a903d57d9f0c
adaptation of search with patient tags at study level
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diff
changeset
|
2301 default: |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
2302 throw OrthancException(ErrorCode_InternalError); |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
2303 } |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
2304 } |
1352 | 2305 else |
2306 { | |
2307 db_.GetMainDicomTags(result, id); | |
2308 return true; | |
2309 } | |
2310 } | |
1555
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1509
diff
changeset
|
2311 |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1509
diff
changeset
|
2312 |
3006
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2313 bool ServerIndex::GetAllMainDicomTags(DicomMap& result, |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
2314 const std::string& instancePublicId) |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
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changeset
|
2315 { |
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DicomMap::ExtractMainDicomTags()
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diff
changeset
|
2316 result.Clear(); |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
2317 |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
2318 boost::mutex::scoped_lock lock(mutex_); |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
2319 |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
2320 // Lookup for the requested resource |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
2321 int64_t instance; |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
2322 ResourceType type; |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
2323 if (!db_.LookupResource(instance, type, instancePublicId) || |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
2324 type != ResourceType_Instance) |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
2325 { |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
2326 return false; |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2327 } |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
2328 else |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
2329 { |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
2330 DicomMap tmp; |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
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2987
diff
changeset
|
2331 |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
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2987
diff
changeset
|
2332 db_.GetMainDicomTags(tmp, instance); |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
2333 result.Merge(tmp); |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
2334 |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
2335 int64_t series; |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2336 if (!db_.LookupParent(series, instance)) |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
2337 { |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
2338 throw OrthancException(ErrorCode_InternalError); |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
2339 } |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
2340 |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
2341 tmp.Clear(); |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
2342 db_.GetMainDicomTags(tmp, series); |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
2343 result.Merge(tmp); |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
2344 |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
2345 int64_t study; |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2346 if (!db_.LookupParent(study, series)) |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
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2987
diff
changeset
|
2347 { |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2348 throw OrthancException(ErrorCode_InternalError); |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2349 } |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2350 |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2351 tmp.Clear(); |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2352 db_.GetMainDicomTags(tmp, study); |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2353 result.Merge(tmp); |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
2354 |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
2355 #ifndef NDEBUG |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2356 { |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2357 // Sanity test to check that all the main DICOM tags from the |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
2358 // patient level are copied at the study level |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2359 |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2360 int64_t patient; |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2361 if (!db_.LookupParent(patient, study)) |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2362 { |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2363 throw OrthancException(ErrorCode_InternalError); |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2364 } |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2365 |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2366 tmp.Clear(); |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2367 db_.GetMainDicomTags(tmp, study); |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2368 |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
2369 std::set<DicomTag> patientTags; |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
2370 tmp.GetTags(patientTags); |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
2371 |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
2372 for (std::set<DicomTag>::const_iterator |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
2373 it = patientTags.begin(); it != patientTags.end(); ++it) |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2374 { |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
2375 assert(result.HasTag(*it)); |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2376 } |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2377 } |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
2378 #endif |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
2379 |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2380 return true; |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2381 } |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2382 } |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
2383 |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
2384 |
1555
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1509
diff
changeset
|
2385 bool ServerIndex::LookupResourceType(ResourceType& type, |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1509
diff
changeset
|
2386 const std::string& publicId) |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1509
diff
changeset
|
2387 { |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1509
diff
changeset
|
2388 boost::mutex::scoped_lock lock(mutex_); |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1509
diff
changeset
|
2389 |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1509
diff
changeset
|
2390 int64_t id; |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1509
diff
changeset
|
2391 return db_.LookupResource(id, type, publicId); |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1509
diff
changeset
|
2392 } |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2393 |
1668
de1413733c97
reconstructing main dicom tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1555
diff
changeset
|
2394 |
de1413733c97
reconstructing main dicom tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1555
diff
changeset
|
2395 unsigned int ServerIndex::GetDatabaseVersion() |
de1413733c97
reconstructing main dicom tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1555
diff
changeset
|
2396 { |
de1413733c97
reconstructing main dicom tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1555
diff
changeset
|
2397 boost::mutex::scoped_lock lock(mutex_); |
de1413733c97
reconstructing main dicom tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1555
diff
changeset
|
2398 return db_.GetDatabaseVersion(); |
de1413733c97
reconstructing main dicom tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1555
diff
changeset
|
2399 } |
1750
55d52567bebb
LookupResource implemented
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1747
diff
changeset
|
2400 |
55d52567bebb
LookupResource implemented
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1747
diff
changeset
|
2401 |
1898
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2402 bool ServerIndex::LookupParent(std::string& target, |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2403 const std::string& publicId, |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2404 ResourceType parentType) |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2405 { |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2406 boost::mutex::scoped_lock lock(mutex_); |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2407 |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2408 ResourceType type; |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2409 int64_t id; |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2410 if (!db_.LookupResource(id, type, publicId)) |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2411 { |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2412 throw OrthancException(ErrorCode_UnknownResource); |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2413 } |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2414 |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2415 while (type != parentType) |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2416 { |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2417 int64_t parentId; |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2418 |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2419 if (type == ResourceType_Patient || // Cannot further go up in hierarchy |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2420 !db_.LookupParent(parentId, id)) |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2421 { |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2422 return false; |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2423 } |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2424 |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2425 id = parentId; |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2426 type = GetParentResourceType(type); |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2427 } |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2428 |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2429 target = db_.GetPublicId(id); |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2430 return true; |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2431 } |
2209
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2432 |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2433 |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2434 void ServerIndex::ReconstructInstance(ParsedDicomFile& dicom) |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2435 { |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2436 DicomMap summary; |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2437 dicom.ExtractDicomSummary(summary); |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2438 |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2439 DicomInstanceHasher hasher(summary); |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2440 |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2441 boost::mutex::scoped_lock lock(mutex_); |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2442 |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2443 try |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2444 { |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2445 Transaction t(*this); |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2446 |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2447 int64_t patient = -1, study = -1, series = -1, instance = -1; |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2448 |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2449 ResourceType dummy; |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2450 if (!db_.LookupResource(patient, dummy, hasher.HashPatient()) || |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2451 !db_.LookupResource(study, dummy, hasher.HashStudy()) || |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2452 !db_.LookupResource(series, dummy, hasher.HashSeries()) || |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2453 !db_.LookupResource(instance, dummy, hasher.HashInstance()) || |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2454 patient == -1 || |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2455 study == -1 || |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2456 series == -1 || |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2457 instance == -1) |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2458 { |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2459 throw OrthancException(ErrorCode_InternalError); |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2460 } |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2461 |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2462 db_.ClearMainDicomTags(patient); |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2463 db_.ClearMainDicomTags(study); |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2464 db_.ClearMainDicomTags(series); |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2465 db_.ClearMainDicomTags(instance); |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2466 |
3083
683d572424b6
IDatabaseWrapper::SetResourcesContent
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3082
diff
changeset
|
2467 { |
683d572424b6
IDatabaseWrapper::SetResourcesContent
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3082
diff
changeset
|
2468 ResourcesContent content; |
683d572424b6
IDatabaseWrapper::SetResourcesContent
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3082
diff
changeset
|
2469 content.AddResource(patient, ResourceType_Patient, summary); |
683d572424b6
IDatabaseWrapper::SetResourcesContent
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3082
diff
changeset
|
2470 content.AddResource(study, ResourceType_Study, summary); |
683d572424b6
IDatabaseWrapper::SetResourcesContent
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3082
diff
changeset
|
2471 content.AddResource(series, ResourceType_Series, summary); |
683d572424b6
IDatabaseWrapper::SetResourcesContent
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3082
diff
changeset
|
2472 content.AddResource(instance, ResourceType_Instance, summary); |
683d572424b6
IDatabaseWrapper::SetResourcesContent
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3082
diff
changeset
|
2473 db_.SetResourcesContent(content); |
683d572424b6
IDatabaseWrapper::SetResourcesContent
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3082
diff
changeset
|
2474 } |
2209
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2475 |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2476 { |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2477 std::string s; |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2478 if (dicom.LookupTransferSyntax(s)) |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2479 { |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2480 db_.SetMetadata(instance, MetadataType_Instance_TransferSyntax, s); |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2481 } |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2482 } |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2483 |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2484 const DicomValue* value; |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2485 if ((value = summary.TestAndGetValue(DICOM_TAG_SOP_CLASS_UID)) != NULL && |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2486 !value->IsNull() && |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2487 !value->IsBinary()) |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2488 { |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2489 db_.SetMetadata(instance, MetadataType_Instance_SopClassUid, value->GetContent()); |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2490 } |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2491 |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2492 t.Commit(0); // No change in the DB size |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2493 } |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2494 catch (OrthancException& e) |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2495 { |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2496 LOG(ERROR) << "EXCEPTION [" << e.What() << "]"; |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2497 } |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2498 } |
3025
039a9d262d64
preparing to speed up find in databases
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3020
diff
changeset
|
2499 |
039a9d262d64
preparing to speed up find in databases
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3020
diff
changeset
|
2500 |
3029
ea653ec47f31
new class: DatabaseConstraint
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3027
diff
changeset
|
2501 void ServerIndex::NormalizeLookup(std::vector<DatabaseConstraint>& target, |
3027 | 2502 const DatabaseLookup& source, |
2503 ResourceType queryLevel) const | |
2504 { | |
2505 assert(mainDicomTagsRegistry_.get() != NULL); | |
3029
ea653ec47f31
new class: DatabaseConstraint
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3027
diff
changeset
|
2506 |
ea653ec47f31
new class: DatabaseConstraint
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3027
diff
changeset
|
2507 target.clear(); |
ea653ec47f31
new class: DatabaseConstraint
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3027
diff
changeset
|
2508 target.reserve(source.GetConstraintsCount()); |
3031 | 2509 |
3027 | 2510 for (size_t i = 0; i < source.GetConstraintsCount(); i++) |
2511 { | |
3031 | 2512 ResourceType level; |
2513 DicomTagType type; | |
3027 | 2514 |
3031 | 2515 mainDicomTagsRegistry_->LookupTag(level, type, source.GetConstraint(i).GetTag()); |
2516 | |
2517 if (type == DicomTagType_Identifier || | |
2518 type == DicomTagType_Main) | |
3027 | 2519 { |
3029
ea653ec47f31
new class: DatabaseConstraint
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3027
diff
changeset
|
2520 // Use the fact that patient-level tags are copied at the study level |
3031 | 2521 if (level == ResourceType_Patient && |
2522 queryLevel != ResourceType_Patient) | |
3027 | 2523 { |
3031 | 2524 level = ResourceType_Study; |
3027 | 2525 } |
3029
ea653ec47f31
new class: DatabaseConstraint
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3027
diff
changeset
|
2526 |
3073
0e9d1731b1b0
refactoring to reuse DatabaseConstraint in separate projects
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3061
diff
changeset
|
2527 target.push_back(source.GetConstraint(i).ConvertToDatabaseConstraint(level, type)); |
3027 | 2528 } |
2529 } | |
2530 } | |
2531 | |
2532 | |
3025
039a9d262d64
preparing to speed up find in databases
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3020
diff
changeset
|
2533 void ServerIndex::ApplyLookupResources(std::vector<std::string>& resourcesId, |
3036
8fd203510d8b
moving LookupIdentifierQuery to the graveyard
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3034
diff
changeset
|
2534 std::vector<std::string>* instancesId, |
3025
039a9d262d64
preparing to speed up find in databases
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3020
diff
changeset
|
2535 const DatabaseLookup& lookup, |
039a9d262d64
preparing to speed up find in databases
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3020
diff
changeset
|
2536 ResourceType queryLevel, |
039a9d262d64
preparing to speed up find in databases
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3020
diff
changeset
|
2537 size_t limit) |
039a9d262d64
preparing to speed up find in databases
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3020
diff
changeset
|
2538 { |
3029
ea653ec47f31
new class: DatabaseConstraint
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3027
diff
changeset
|
2539 std::vector<DatabaseConstraint> normalized; |
3027 | 2540 NormalizeLookup(normalized, lookup, queryLevel); |
2541 | |
3075
ead8576a02ef
IDatabaseWrapper::ApplyLookupResources now returns lists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3073
diff
changeset
|
2542 std::list<std::string> resourcesList, instancesList; |
ead8576a02ef
IDatabaseWrapper::ApplyLookupResources now returns lists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3073
diff
changeset
|
2543 |
3027 | 2544 { |
2545 boost::mutex::scoped_lock lock(mutex_); | |
3075
ead8576a02ef
IDatabaseWrapper::ApplyLookupResources now returns lists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3073
diff
changeset
|
2546 |
ead8576a02ef
IDatabaseWrapper::ApplyLookupResources now returns lists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3073
diff
changeset
|
2547 if (instancesId == NULL) |
ead8576a02ef
IDatabaseWrapper::ApplyLookupResources now returns lists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3073
diff
changeset
|
2548 { |
ead8576a02ef
IDatabaseWrapper::ApplyLookupResources now returns lists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3073
diff
changeset
|
2549 db_.ApplyLookupResources(resourcesList, NULL, normalized, queryLevel, limit); |
ead8576a02ef
IDatabaseWrapper::ApplyLookupResources now returns lists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3073
diff
changeset
|
2550 } |
ead8576a02ef
IDatabaseWrapper::ApplyLookupResources now returns lists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3073
diff
changeset
|
2551 else |
ead8576a02ef
IDatabaseWrapper::ApplyLookupResources now returns lists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3073
diff
changeset
|
2552 { |
ead8576a02ef
IDatabaseWrapper::ApplyLookupResources now returns lists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3073
diff
changeset
|
2553 db_.ApplyLookupResources(resourcesList, &instancesList, normalized, queryLevel, limit); |
ead8576a02ef
IDatabaseWrapper::ApplyLookupResources now returns lists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3073
diff
changeset
|
2554 } |
ead8576a02ef
IDatabaseWrapper::ApplyLookupResources now returns lists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3073
diff
changeset
|
2555 } |
ead8576a02ef
IDatabaseWrapper::ApplyLookupResources now returns lists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3073
diff
changeset
|
2556 |
ead8576a02ef
IDatabaseWrapper::ApplyLookupResources now returns lists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3073
diff
changeset
|
2557 CopyListToVector(resourcesId, resourcesList); |
ead8576a02ef
IDatabaseWrapper::ApplyLookupResources now returns lists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3073
diff
changeset
|
2558 |
ead8576a02ef
IDatabaseWrapper::ApplyLookupResources now returns lists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3073
diff
changeset
|
2559 if (instancesId != NULL) |
ead8576a02ef
IDatabaseWrapper::ApplyLookupResources now returns lists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3073
diff
changeset
|
2560 { |
ead8576a02ef
IDatabaseWrapper::ApplyLookupResources now returns lists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3073
diff
changeset
|
2561 CopyListToVector(*instancesId, instancesList); |
3027 | 2562 } |
3025
039a9d262d64
preparing to speed up find in databases
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3020
diff
changeset
|
2563 } |
0 | 2564 } |