Mercurial > hg > orthanc
annotate OrthancServer/DatabaseWrapper.cpp @ 1240:62c35e4b67db
refactoring
| author | Sebastien Jodogne <s.jodogne@gmail.com> |
|---|---|
| date | Fri, 05 Dec 2014 17:12:35 +0100 |
| parents | 92c6b3b57699 |
| children | 90d2f320862d |
| rev | line source |
|---|---|
| 183 | 1 /** |
| 2 * Orthanc - A Lightweight, RESTful DICOM Store | |
| 689 | 3 * Copyright (C) 2012-2014 Medical Physics Department, CHU of Liege, |
| 183 | 4 * Belgium |
| 5 * | |
| 6 * This program is free software: you can redistribute it and/or | |
| 7 * modify it under the terms of the GNU General Public License as | |
| 8 * published by the Free Software Foundation, either version 3 of the | |
| 9 * License, or (at your option) any later version. | |
| 10 * | |
| 11 * In addition, as a special exception, the copyright holders of this | |
| 12 * program give permission to link the code of its release with the | |
| 13 * OpenSSL project's "OpenSSL" library (or with modified versions of it | |
| 14 * that use the same license as the "OpenSSL" library), and distribute | |
| 15 * the linked executables. You must obey the GNU General Public License | |
| 16 * in all respects for all of the code used other than "OpenSSL". If you | |
| 17 * modify file(s) with this exception, you may extend this exception to | |
| 18 * your version of the file(s), but you are not obligated to do so. If | |
| 19 * you do not wish to do so, delete this exception statement from your | |
| 20 * version. If you delete this exception statement from all source files | |
| 21 * in the program, then also delete it here. | |
| 22 * | |
| 23 * This program is distributed in the hope that it will be useful, but | |
| 24 * WITHOUT ANY WARRANTY; without even the implied warranty of | |
| 25 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU | |
| 26 * General Public License for more details. | |
| 27 * | |
| 28 * You should have received a copy of the GNU General Public License | |
| 29 * along with this program. If not, see <http://www.gnu.org/licenses/>. | |
| 30 **/ | |
| 31 | |
| 32 | |
|
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33 #include "PrecompiledHeadersServer.h" |
| 183 | 34 #include "DatabaseWrapper.h" |
| 35 | |
| 36 #include "../Core/DicomFormat/DicomArray.h" | |
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37 #include "../Core/Uuid.h" |
| 183 | 38 #include "EmbeddedResources.h" |
| 39 | |
| 40 #include <glog/logging.h> | |
| 41 #include <stdio.h> | |
| 42 | |
| 43 namespace Orthanc | |
| 44 { | |
| 45 | |
| 46 namespace Internals | |
| 47 { | |
| 48 class SignalFileDeleted : public SQLite::IScalarFunction | |
| 49 { | |
| 50 private: | |
| 51 IServerIndexListener& listener_; | |
| 52 | |
| 53 public: | |
| 54 SignalFileDeleted(IServerIndexListener& listener) : | |
| 55 listener_(listener) | |
| 56 { | |
| 57 } | |
| 58 | |
| 59 virtual const char* GetName() const | |
| 60 { | |
| 61 return "SignalFileDeleted"; | |
| 62 } | |
| 63 | |
| 64 virtual unsigned int GetCardinality() const | |
| 65 { | |
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66 return 7; |
| 183 | 67 } |
| 68 | |
| 69 virtual void Compute(SQLite::FunctionContext& context) | |
| 70 { | |
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71 std::string uncompressedMD5, compressedMD5; |
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72 |
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73 if (!context.IsNullValue(5)) |
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74 { |
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75 uncompressedMD5 = context.GetStringValue(5); |
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76 } |
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77 |
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78 if (!context.IsNullValue(6)) |
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79 { |
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80 compressedMD5 = context.GetStringValue(6); |
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81 } |
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82 |
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83 FileInfo info(context.GetStringValue(0), |
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84 static_cast<FileContentType>(context.GetIntValue(1)), |
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85 static_cast<uint64_t>(context.GetInt64Value(2)), |
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86 uncompressedMD5, |
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87 static_cast<CompressionType>(context.GetIntValue(3)), |
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88 static_cast<uint64_t>(context.GetInt64Value(4)), |
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89 compressedMD5); |
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90 |
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91 listener_.SignalFileDeleted(info); |
| 183 | 92 } |
| 93 }; | |
| 94 | |
| 1158 | 95 class SignalResourceDeleted : public SQLite::IScalarFunction |
| 96 { | |
| 97 private: | |
| 98 IServerIndexListener& listener_; | |
| 99 | |
| 100 public: | |
| 101 SignalResourceDeleted(IServerIndexListener& listener) : | |
| 102 listener_(listener) | |
| 103 { | |
| 104 } | |
| 105 | |
| 106 virtual const char* GetName() const | |
| 107 { | |
| 108 return "SignalResourceDeleted"; | |
| 109 } | |
| 110 | |
| 111 virtual unsigned int GetCardinality() const | |
| 112 { | |
| 113 return 2; | |
| 114 } | |
| 115 | |
| 116 virtual void Compute(SQLite::FunctionContext& context) | |
| 117 { | |
| 118 ResourceType type = static_cast<ResourceType>(context.GetIntValue(1)); | |
| 1198 | 119 ServerIndexChange change(ChangeType_Deleted, type, context.GetStringValue(0)); |
| 120 listener_.SignalChange(change); | |
| 1158 | 121 } |
| 122 }; | |
| 123 | |
| 183 | 124 class SignalRemainingAncestor : public SQLite::IScalarFunction |
| 125 { | |
| 126 private: | |
| 127 bool hasRemainingAncestor_; | |
| 128 std::string remainingPublicId_; | |
| 129 ResourceType remainingType_; | |
| 130 | |
| 131 public: | |
| 660 | 132 SignalRemainingAncestor() : |
| 133 hasRemainingAncestor_(false) | |
| 134 { | |
| 135 } | |
| 136 | |
| 183 | 137 void Reset() |
| 138 { | |
| 139 hasRemainingAncestor_ = false; | |
| 140 } | |
| 141 | |
| 142 virtual const char* GetName() const | |
| 143 { | |
| 144 return "SignalRemainingAncestor"; | |
| 145 } | |
| 146 | |
| 147 virtual unsigned int GetCardinality() const | |
| 148 { | |
| 149 return 2; | |
| 150 } | |
| 151 | |
| 152 virtual void Compute(SQLite::FunctionContext& context) | |
| 153 { | |
| 154 VLOG(1) << "There exists a remaining ancestor with public ID \"" | |
| 155 << context.GetStringValue(0) | |
| 156 << "\" of type " | |
| 157 << context.GetIntValue(1); | |
| 158 | |
| 159 if (!hasRemainingAncestor_ || | |
| 160 remainingType_ >= context.GetIntValue(1)) | |
| 161 { | |
| 162 hasRemainingAncestor_ = true; | |
| 163 remainingPublicId_ = context.GetStringValue(0); | |
| 164 remainingType_ = static_cast<ResourceType>(context.GetIntValue(1)); | |
| 165 } | |
| 166 } | |
| 167 | |
| 168 bool HasRemainingAncestor() const | |
| 169 { | |
| 170 return hasRemainingAncestor_; | |
| 171 } | |
| 172 | |
| 173 const std::string& GetRemainingAncestorId() const | |
| 174 { | |
| 175 assert(hasRemainingAncestor_); | |
| 176 return remainingPublicId_; | |
| 177 } | |
| 178 | |
| 179 ResourceType GetRemainingAncestorType() const | |
| 180 { | |
| 181 assert(hasRemainingAncestor_); | |
| 182 return remainingType_; | |
| 183 } | |
| 184 }; | |
| 185 } | |
| 186 | |
| 187 | |
| 188 | |
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189 void DatabaseWrapper::SetGlobalProperty(GlobalProperty property, |
| 183 | 190 const std::string& value) |
| 191 { | |
| 192 SQLite::Statement s(db_, SQLITE_FROM_HERE, "INSERT OR REPLACE INTO GlobalProperties VALUES(?, ?)"); | |
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193 s.BindInt(0, property); |
| 183 | 194 s.BindString(1, value); |
| 195 s.Run(); | |
| 196 } | |
| 197 | |
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198 bool DatabaseWrapper::LookupGlobalProperty(std::string& target, |
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199 GlobalProperty property) |
| 183 | 200 { |
| 201 SQLite::Statement s(db_, SQLITE_FROM_HERE, | |
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202 "SELECT value FROM GlobalProperties WHERE property=?"); |
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203 s.BindInt(0, property); |
| 183 | 204 |
| 205 if (!s.Step()) | |
| 206 { | |
| 207 return false; | |
| 208 } | |
| 209 else | |
| 210 { | |
| 211 target = s.ColumnString(0); | |
| 212 return true; | |
| 213 } | |
| 214 } | |
| 215 | |
| 216 int64_t DatabaseWrapper::CreateResource(const std::string& publicId, | |
| 217 ResourceType type) | |
| 218 { | |
| 219 SQLite::Statement s(db_, SQLITE_FROM_HERE, "INSERT INTO Resources VALUES(NULL, ?, ?, NULL)"); | |
| 220 s.BindInt(0, type); | |
| 221 s.BindString(1, publicId); | |
| 222 s.Run(); | |
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223 int64_t id = db_.GetLastInsertRowId(); |
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224 |
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225 ChangeType changeType; |
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226 switch (type) |
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227 { |
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228 case ResourceType_Patient: |
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229 changeType = ChangeType_NewPatient; |
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230 break; |
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231 |
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232 case ResourceType_Study: |
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233 changeType = ChangeType_NewStudy; |
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234 break; |
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235 |
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236 case ResourceType_Series: |
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237 changeType = ChangeType_NewSeries; |
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238 break; |
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239 |
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240 case ResourceType_Instance: |
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241 changeType = ChangeType_NewInstance; |
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242 break; |
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243 |
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244 default: |
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245 throw OrthancException(ErrorCode_InternalError); |
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246 } |
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247 |
| 1237 | 248 ServerIndexChange change(changeType, type, publicId); |
| 249 LogChange(id, change); | |
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250 return id; |
| 183 | 251 } |
| 252 | |
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253 bool DatabaseWrapper::LookupResource(const std::string& publicId, |
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254 int64_t& id, |
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255 ResourceType& type) |
| 183 | 256 { |
| 257 SQLite::Statement s(db_, SQLITE_FROM_HERE, | |
| 258 "SELECT internalId, resourceType FROM Resources WHERE publicId=?"); | |
| 259 s.BindString(0, publicId); | |
| 260 | |
| 261 if (!s.Step()) | |
| 262 { | |
| 263 return false; | |
| 264 } | |
| 265 else | |
| 266 { | |
| 267 id = s.ColumnInt(0); | |
| 268 type = static_cast<ResourceType>(s.ColumnInt(1)); | |
| 269 | |
| 270 // Check whether there is a single resource with this public id | |
| 271 assert(!s.Step()); | |
| 272 | |
| 273 return true; | |
| 274 } | |
| 275 } | |
| 276 | |
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277 bool DatabaseWrapper::LookupParent(int64_t& parentId, |
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278 int64_t resourceId) |
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279 { |
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280 SQLite::Statement s(db_, SQLITE_FROM_HERE, |
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281 "SELECT parentId FROM Resources WHERE internalId=?"); |
| 585 | 282 s.BindInt64(0, resourceId); |
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283 |
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284 if (!s.Step()) |
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285 { |
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286 throw OrthancException(ErrorCode_UnknownResource); |
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287 } |
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288 |
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289 if (s.ColumnIsNull(0)) |
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290 { |
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291 return false; |
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292 } |
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293 else |
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294 { |
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295 parentId = s.ColumnInt(0); |
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296 return true; |
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297 } |
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298 } |
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299 |
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300 std::string DatabaseWrapper::GetPublicId(int64_t resourceId) |
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301 { |
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302 SQLite::Statement s(db_, SQLITE_FROM_HERE, |
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303 "SELECT publicId FROM Resources WHERE internalId=?"); |
| 585 | 304 s.BindInt64(0, resourceId); |
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305 |
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306 if (!s.Step()) |
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307 { |
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308 throw OrthancException(ErrorCode_UnknownResource); |
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309 } |
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310 |
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311 return s.ColumnString(0); |
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312 } |
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313 |
| 304 | 314 |
| 315 ResourceType DatabaseWrapper::GetResourceType(int64_t resourceId) | |
| 316 { | |
| 317 SQLite::Statement s(db_, SQLITE_FROM_HERE, | |
| 318 "SELECT resourceType FROM Resources WHERE internalId=?"); | |
| 585 | 319 s.BindInt64(0, resourceId); |
| 304 | 320 |
| 321 if (!s.Step()) | |
| 322 { | |
| 323 throw OrthancException(ErrorCode_UnknownResource); | |
| 324 } | |
| 325 | |
| 326 return static_cast<ResourceType>(s.ColumnInt(0)); | |
| 327 } | |
| 328 | |
| 329 | |
| 183 | 330 void DatabaseWrapper::AttachChild(int64_t parent, |
| 331 int64_t child) | |
| 332 { | |
| 333 SQLite::Statement s(db_, SQLITE_FROM_HERE, "UPDATE Resources SET parentId = ? WHERE internalId = ?"); | |
| 585 | 334 s.BindInt64(0, parent); |
| 335 s.BindInt64(1, child); | |
| 183 | 336 s.Run(); |
| 337 } | |
| 338 | |
|
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339 void DatabaseWrapper::GetChildren(Json::Value& childrenPublicIds, |
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340 int64_t id) |
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341 { |
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342 SQLite::Statement s(db_, SQLITE_FROM_HERE, "SELECT publicId FROM Resources WHERE parentId=?"); |
| 585 | 343 s.BindInt64(0, id); |
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344 |
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345 childrenPublicIds = Json::arrayValue; |
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346 while (s.Step()) |
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347 { |
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348 childrenPublicIds.append(s.ColumnString(0)); |
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349 } |
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350 } |
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351 |
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352 |
| 183 | 353 void DatabaseWrapper::DeleteResource(int64_t id) |
| 354 { | |
| 355 signalRemainingAncestor_->Reset(); | |
| 356 | |
| 357 SQLite::Statement s(db_, SQLITE_FROM_HERE, "DELETE FROM Resources WHERE internalId=?"); | |
| 585 | 358 s.BindInt64(0, id); |
| 183 | 359 s.Run(); |
| 360 | |
| 361 if (signalRemainingAncestor_->HasRemainingAncestor()) | |
| 362 { | |
| 363 listener_.SignalRemainingAncestor(signalRemainingAncestor_->GetRemainingAncestorType(), | |
| 364 signalRemainingAncestor_->GetRemainingAncestorId()); | |
| 365 } | |
| 366 } | |
| 367 | |
| 368 void DatabaseWrapper::SetMetadata(int64_t id, | |
| 369 MetadataType type, | |
| 370 const std::string& value) | |
| 371 { | |
| 372 SQLite::Statement s(db_, SQLITE_FROM_HERE, "INSERT OR REPLACE INTO Metadata VALUES(?, ?, ?)"); | |
| 585 | 373 s.BindInt64(0, id); |
| 183 | 374 s.BindInt(1, type); |
| 375 s.BindString(2, value); | |
| 376 s.Run(); | |
| 377 } | |
| 378 | |
| 438 | 379 void DatabaseWrapper::DeleteMetadata(int64_t id, |
| 380 MetadataType type) | |
| 381 { | |
| 382 SQLite::Statement s(db_, SQLITE_FROM_HERE, "DELETE FROM Metadata WHERE id=? and type=?"); | |
| 585 | 383 s.BindInt64(0, id); |
| 438 | 384 s.BindInt(1, type); |
| 385 s.Run(); | |
| 386 } | |
| 387 | |
|
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388 bool DatabaseWrapper::LookupMetadata(std::string& target, |
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389 int64_t id, |
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390 MetadataType type) |
| 183 | 391 { |
| 392 SQLite::Statement s(db_, SQLITE_FROM_HERE, | |
| 393 "SELECT value FROM Metadata WHERE id=? AND type=?"); | |
| 585 | 394 s.BindInt64(0, id); |
| 183 | 395 s.BindInt(1, type); |
| 396 | |
| 397 if (!s.Step()) | |
| 398 { | |
| 399 return false; | |
| 400 } | |
| 401 else | |
| 402 { | |
| 403 target = s.ColumnString(0); | |
| 404 return true; | |
| 405 } | |
| 406 } | |
| 407 | |
| 739 | 408 void DatabaseWrapper::ListAvailableMetadata(std::list<MetadataType>& target, |
|
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409 int64_t id) |
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410 { |
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411 target.clear(); |
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412 |
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413 SQLite::Statement s(db_, SQLITE_FROM_HERE, "SELECT type FROM Metadata WHERE id=?"); |
| 585 | 414 s.BindInt64(0, id); |
|
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415 |
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416 while (s.Step()) |
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417 { |
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418 target.push_back(static_cast<MetadataType>(s.ColumnInt(0))); |
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419 } |
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420 } |
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421 |
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422 |
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423 void DatabaseWrapper::AddAttachment(int64_t id, |
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424 const FileInfo& attachment) |
| 183 | 425 { |
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426 SQLite::Statement s(db_, SQLITE_FROM_HERE, "INSERT INTO AttachedFiles VALUES(?, ?, ?, ?, ?, ?, ?, ?)"); |
| 585 | 427 s.BindInt64(0, id); |
| 233 | 428 s.BindInt(1, attachment.GetContentType()); |
|
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429 s.BindString(2, attachment.GetUuid()); |
| 585 | 430 s.BindInt64(3, attachment.GetCompressedSize()); |
| 431 s.BindInt64(4, attachment.GetUncompressedSize()); | |
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432 s.BindInt(5, attachment.GetCompressionType()); |
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433 s.BindString(6, attachment.GetUncompressedMD5()); |
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434 s.BindString(7, attachment.GetCompressedMD5()); |
| 183 | 435 s.Run(); |
| 436 } | |
| 437 | |
|
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438 |
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439 void DatabaseWrapper::DeleteAttachment(int64_t id, |
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440 FileContentType attachment) |
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441 { |
| 701 | 442 SQLite::Statement s(db_, SQLITE_FROM_HERE, "DELETE FROM AttachedFiles WHERE id=? AND fileType=?"); |
|
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443 s.BindInt64(0, id); |
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444 s.BindInt(1, attachment); |
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445 s.Run(); |
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446 } |
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447 |
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448 |
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449 |
|
440
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450 void DatabaseWrapper::ListAvailableAttachments(std::list<FileContentType>& result, |
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451 int64_t id) |
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452 { |
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453 result.clear(); |
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454 |
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455 SQLite::Statement s(db_, SQLITE_FROM_HERE, |
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456 "SELECT fileType FROM AttachedFiles WHERE id=?"); |
| 585 | 457 s.BindInt64(0, id); |
|
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458 |
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459 while (s.Step()) |
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460 { |
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461 result.push_back(static_cast<FileContentType>(s.ColumnInt(0))); |
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462 } |
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463 } |
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464 |
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465 bool DatabaseWrapper::LookupAttachment(FileInfo& attachment, |
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466 int64_t id, |
| 233 | 467 FileContentType contentType) |
| 183 | 468 { |
| 469 SQLite::Statement s(db_, SQLITE_FROM_HERE, | |
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470 "SELECT uuid, uncompressedSize, compressionType, compressedSize, uncompressedMD5, compressedMD5 FROM AttachedFiles WHERE id=? AND fileType=?"); |
| 585 | 471 s.BindInt64(0, id); |
|
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472 s.BindInt(1, contentType); |
| 183 | 473 |
| 474 if (!s.Step()) | |
| 475 { | |
| 476 return false; | |
| 477 } | |
| 478 else | |
| 479 { | |
|
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480 attachment = FileInfo(s.ColumnString(0), |
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481 contentType, |
| 740 | 482 s.ColumnInt64(1), |
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483 s.ColumnString(4), |
|
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484 static_cast<CompressionType>(s.ColumnInt(2)), |
| 740 | 485 s.ColumnInt64(3), |
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486 s.ColumnString(5)); |
| 183 | 487 return true; |
| 488 } | |
| 489 } | |
| 490 | |
| 1162 | 491 |
| 492 static void SetMainDicomTagsInternal(SQLite::Statement& s, | |
| 493 int64_t id, | |
| 494 const DicomElement& element) | |
| 495 { | |
| 496 s.BindInt64(0, id); | |
| 497 s.BindInt(1, element.GetTag().GetGroup()); | |
| 498 s.BindInt(2, element.GetTag().GetElement()); | |
| 499 s.BindString(3, element.GetValue().AsString()); | |
| 500 s.Run(); | |
| 501 } | |
| 502 | |
| 503 | |
| 183 | 504 void DatabaseWrapper::SetMainDicomTags(int64_t id, |
| 505 const DicomMap& tags) | |
| 506 { | |
| 507 DicomArray flattened(tags); | |
| 508 for (size_t i = 0; i < flattened.GetSize(); i++) | |
| 509 { | |
| 1162 | 510 if (flattened.GetElement(i).GetTag().IsIdentifier()) |
| 511 { | |
| 1173 | 512 SQLite::Statement s(db_, SQLITE_FROM_HERE, "INSERT INTO DicomIdentifiers VALUES(?, ?, ?, ?)"); |
| 1162 | 513 SetMainDicomTagsInternal(s, id, flattened.GetElement(i)); |
| 514 } | |
| 515 else | |
| 516 { | |
| 1173 | 517 SQLite::Statement s(db_, SQLITE_FROM_HERE, "INSERT INTO MainDicomTags VALUES(?, ?, ?, ?)"); |
| 1162 | 518 SetMainDicomTagsInternal(s, id, flattened.GetElement(i)); |
| 519 } | |
| 183 | 520 } |
| 521 } | |
| 522 | |
| 523 void DatabaseWrapper::GetMainDicomTags(DicomMap& map, | |
| 524 int64_t id) | |
| 525 { | |
| 526 map.Clear(); | |
| 527 | |
| 528 SQLite::Statement s(db_, SQLITE_FROM_HERE, "SELECT * FROM MainDicomTags WHERE id=?"); | |
| 585 | 529 s.BindInt64(0, id); |
| 183 | 530 while (s.Step()) |
| 531 { | |
| 532 map.SetValue(s.ColumnInt(1), | |
| 533 s.ColumnInt(2), | |
| 534 s.ColumnString(3)); | |
| 535 } | |
| 1162 | 536 |
| 537 SQLite::Statement s2(db_, SQLITE_FROM_HERE, "SELECT * FROM DicomIdentifiers WHERE id=?"); | |
| 538 s2.BindInt64(0, id); | |
| 539 while (s2.Step()) | |
| 540 { | |
| 541 map.SetValue(s2.ColumnInt(1), | |
| 542 s2.ColumnInt(2), | |
| 543 s2.ColumnString(3)); | |
| 544 } | |
| 183 | 545 } |
| 546 | |
| 547 | |
| 548 bool DatabaseWrapper::GetParentPublicId(std::string& result, | |
| 549 int64_t id) | |
| 550 { | |
| 551 SQLite::Statement s(db_, SQLITE_FROM_HERE, "SELECT a.publicId FROM Resources AS a, Resources AS b " | |
| 552 "WHERE a.internalId = b.parentId AND b.internalId = ?"); | |
| 585 | 553 s.BindInt64(0, id); |
| 183 | 554 |
| 555 if (s.Step()) | |
| 556 { | |
| 557 result = s.ColumnString(0); | |
| 558 return true; | |
| 559 } | |
| 560 else | |
| 561 { | |
| 562 return false; | |
| 563 } | |
| 564 } | |
| 565 | |
| 566 | |
| 567 void DatabaseWrapper::GetChildrenPublicId(std::list<std::string>& result, | |
| 568 int64_t id) | |
| 569 { | |
| 570 SQLite::Statement s(db_, SQLITE_FROM_HERE, "SELECT a.publicId FROM Resources AS a, Resources AS b " | |
| 571 "WHERE a.parentId = b.internalId AND b.internalId = ?"); | |
| 585 | 572 s.BindInt64(0, id); |
| 183 | 573 |
| 574 result.clear(); | |
| 575 | |
| 576 while (s.Step()) | |
| 577 { | |
| 578 result.push_back(s.ColumnString(0)); | |
| 579 } | |
| 580 } | |
| 581 | |
| 582 | |
| 199 | 583 void DatabaseWrapper::GetChildrenInternalId(std::list<int64_t>& result, |
| 584 int64_t id) | |
| 585 { | |
| 586 SQLite::Statement s(db_, SQLITE_FROM_HERE, "SELECT a.internalId FROM Resources AS a, Resources AS b " | |
| 587 "WHERE a.parentId = b.internalId AND b.internalId = ?"); | |
| 585 | 588 s.BindInt64(0, id); |
| 199 | 589 |
| 590 result.clear(); | |
| 591 | |
| 592 while (s.Step()) | |
| 593 { | |
| 741 | 594 result.push_back(s.ColumnInt64(0)); |
| 199 | 595 } |
| 596 } | |
| 597 | |
| 598 | |
| 1198 | 599 void DatabaseWrapper::LogChange(int64_t internalId, |
| 600 const ServerIndexChange& change) | |
| 183 | 601 { |
| 1198 | 602 if (change.GetChangeType() <= ChangeType_INTERNAL_LastLogged) |
|
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603 { |
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604 SQLite::Statement s(db_, SQLITE_FROM_HERE, "INSERT INTO Changes VALUES(NULL, ?, ?, ?, ?)"); |
| 1198 | 605 s.BindInt(0, change.GetChangeType()); |
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606 s.BindInt64(1, internalId); |
| 1198 | 607 s.BindInt(2, change.GetResourceType()); |
| 1240 | 608 s.BindString(3, change.GetDate()); |
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609 s.Run(); |
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610 } |
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611 |
| 1198 | 612 listener_.SignalChange(change); |
| 183 | 613 } |
| 614 | |
| 615 | |
| 1240 | 616 void DatabaseWrapper::GetChangesInternal(std::list<ServerIndexChange>& target, |
| 617 bool& done, | |
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618 SQLite::Statement& s, |
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619 unsigned int maxResults) |
| 204 | 620 { |
| 1240 | 621 while (target.size() < maxResults && s.Step()) |
| 204 | 622 { |
| 742 | 623 int64_t seq = s.ColumnInt64(0); |
| 204 | 624 ChangeType changeType = static_cast<ChangeType>(s.ColumnInt(1)); |
| 625 ResourceType resourceType = static_cast<ResourceType>(s.ColumnInt(3)); | |
| 626 const std::string& date = s.ColumnString(4); | |
| 1240 | 627 |
| 628 int64_t internalId = s.ColumnInt64(2); | |
|
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629 std::string publicId = GetPublicId(internalId); |
| 204 | 630 |
| 1240 | 631 target.push_back(ServerIndexChange(seq, changeType, resourceType, publicId, date)); |
| 204 | 632 } |
| 633 | |
| 1240 | 634 done = !(target.size() == maxResults && s.Step()); |
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635 } |
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636 |
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637 |
| 1240 | 638 void DatabaseWrapper::GetChanges(std::list<ServerIndexChange>& target, |
| 639 bool& done, | |
|
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640 int64_t since, |
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641 unsigned int maxResults) |
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642 { |
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643 SQLite::Statement s(db_, SQLITE_FROM_HERE, "SELECT * FROM Changes WHERE seq>? ORDER BY seq LIMIT ?"); |
| 585 | 644 s.BindInt64(0, since); |
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645 s.BindInt(1, maxResults + 1); |
| 1240 | 646 GetChangesInternal(target, done, s, maxResults); |
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647 } |
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648 |
| 1240 | 649 void DatabaseWrapper::GetLastChange(std::list<ServerIndexChange>& target) |
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650 { |
| 1240 | 651 bool done; // Ignored |
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652 SQLite::Statement s(db_, SQLITE_FROM_HERE, "SELECT * FROM Changes ORDER BY seq DESC LIMIT 1"); |
| 1240 | 653 GetChangesInternal(target, done, s, 1); |
| 204 | 654 } |
| 655 | |
| 656 | |
| 231 | 657 void DatabaseWrapper::LogExportedResource(ResourceType resourceType, |
| 658 const std::string& publicId, | |
| 659 const std::string& remoteModality, | |
| 660 const std::string& patientId, | |
| 661 const std::string& studyInstanceUid, | |
| 662 const std::string& seriesInstanceUid, | |
| 663 const std::string& sopInstanceUid, | |
| 183 | 664 const boost::posix_time::ptime& date) |
| 665 { | |
| 231 | 666 SQLite::Statement s(db_, SQLITE_FROM_HERE, |
| 667 "INSERT INTO ExportedResources VALUES(NULL, ?, ?, ?, ?, ?, ?, ?, ?)"); | |
| 668 | |
| 669 s.BindInt(0, resourceType); | |
| 670 s.BindString(1, publicId); | |
| 671 s.BindString(2, remoteModality); | |
| 672 s.BindString(3, patientId); | |
| 673 s.BindString(4, studyInstanceUid); | |
| 674 s.BindString(5, seriesInstanceUid); | |
| 675 s.BindString(6, sopInstanceUid); | |
| 676 s.BindString(7, boost::posix_time::to_iso_string(date)); | |
| 677 | |
| 183 | 678 s.Run(); |
| 679 } | |
| 231 | 680 |
| 681 | |
| 742 | 682 void DatabaseWrapper::GetExportedResourcesInternal(Json::Value& target, |
| 683 SQLite::Statement& s, | |
| 684 int64_t since, | |
| 685 unsigned int maxResults) | |
| 231 | 686 { |
| 687 Json::Value changes = Json::arrayValue; | |
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688 int64_t last = since; |
| 231 | 689 |
| 690 while (changes.size() < maxResults && s.Step()) | |
| 691 { | |
| 743 | 692 int64_t seq = s.ColumnInt64(0); |
| 231 | 693 ResourceType resourceType = static_cast<ResourceType>(s.ColumnInt(1)); |
| 694 std::string publicId = s.ColumnString(2); | |
| 695 | |
| 696 Json::Value item = Json::objectValue; | |
| 697 item["Seq"] = static_cast<int>(seq); | |
|
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698 item["ResourceType"] = EnumerationToString(resourceType); |
| 231 | 699 item["ID"] = publicId; |
| 700 item["Path"] = GetBasePath(resourceType, publicId); | |
| 701 item["RemoteModality"] = s.ColumnString(3); | |
| 702 item["Date"] = s.ColumnString(8); | |
| 703 | |
| 704 // WARNING: Do not add "break" below and do not reorder the case items! | |
| 705 switch (resourceType) | |
| 706 { | |
| 707 case ResourceType_Instance: | |
| 708 item["SopInstanceUid"] = s.ColumnString(7); | |
| 709 | |
| 710 case ResourceType_Series: | |
| 711 item["SeriesInstanceUid"] = s.ColumnString(6); | |
| 712 | |
| 713 case ResourceType_Study: | |
| 714 item["StudyInstanceUid"] = s.ColumnString(5); | |
| 715 | |
| 716 case ResourceType_Patient: | |
| 717 item["PatientId"] = s.ColumnString(4); | |
| 718 break; | |
| 719 | |
| 720 default: | |
| 721 throw OrthancException(ErrorCode_InternalError); | |
| 722 } | |
| 723 | |
| 724 last = seq; | |
| 725 | |
| 726 changes.append(item); | |
| 727 } | |
| 728 | |
| 729 target = Json::objectValue; | |
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730 target["Exports"] = changes; |
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731 target["Done"] = !(changes.size() == maxResults && s.Step()); |
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732 target["Last"] = static_cast<int>(last); |
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733 } |
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734 |
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735 |
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736 void DatabaseWrapper::GetExportedResources(Json::Value& target, |
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737 int64_t since, |
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738 unsigned int maxResults) |
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739 { |
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740 SQLite::Statement s(db_, SQLITE_FROM_HERE, |
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741 "SELECT * FROM ExportedResources WHERE seq>? ORDER BY seq LIMIT ?"); |
| 585 | 742 s.BindInt64(0, since); |
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743 s.BindInt(1, maxResults + 1); |
| 742 | 744 GetExportedResourcesInternal(target, s, since, maxResults); |
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745 } |
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746 |
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747 |
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748 void DatabaseWrapper::GetLastExportedResource(Json::Value& target) |
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749 { |
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750 SQLite::Statement s(db_, SQLITE_FROM_HERE, |
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751 "SELECT * FROM ExportedResources ORDER BY seq DESC LIMIT 1"); |
| 742 | 752 GetExportedResourcesInternal(target, s, 0, 1); |
| 231 | 753 } |
| 754 | |
| 755 | |
| 183 | 756 |
| 757 | |
| 758 int64_t DatabaseWrapper::GetTableRecordCount(const std::string& table) | |
| 759 { | |
| 760 char buf[128]; | |
| 761 sprintf(buf, "SELECT COUNT(*) FROM %s", table.c_str()); | |
| 762 SQLite::Statement s(db_, buf); | |
| 763 | |
| 218 | 764 if (!s.Step()) |
| 765 { | |
| 766 throw OrthancException(ErrorCode_InternalError); | |
| 767 } | |
| 768 | |
| 183 | 769 int64_t c = s.ColumnInt(0); |
| 770 assert(!s.Step()); | |
| 771 | |
| 772 return c; | |
| 773 } | |
| 774 | |
| 775 | |
| 776 uint64_t DatabaseWrapper::GetTotalCompressedSize() | |
| 777 { | |
| 778 SQLite::Statement s(db_, SQLITE_FROM_HERE, "SELECT SUM(compressedSize) FROM AttachedFiles"); | |
| 779 s.Run(); | |
| 780 return static_cast<uint64_t>(s.ColumnInt64(0)); | |
| 781 } | |
| 782 | |
| 783 | |
| 784 uint64_t DatabaseWrapper::GetTotalUncompressedSize() | |
| 785 { | |
| 786 SQLite::Statement s(db_, SQLITE_FROM_HERE, "SELECT SUM(uncompressedSize) FROM AttachedFiles"); | |
| 787 s.Run(); | |
| 788 return static_cast<uint64_t>(s.ColumnInt64(0)); | |
| 789 } | |
| 790 | |
| 190 | 791 void DatabaseWrapper::GetAllPublicIds(Json::Value& target, |
| 792 ResourceType resourceType) | |
| 793 { | |
| 794 SQLite::Statement s(db_, SQLITE_FROM_HERE, "SELECT publicId FROM Resources WHERE resourceType=?"); | |
| 795 s.BindInt(0, resourceType); | |
| 796 | |
| 797 target = Json::arrayValue; | |
| 798 while (s.Step()) | |
| 799 { | |
| 800 target.append(s.ColumnString(0)); | |
| 801 } | |
| 802 } | |
| 803 | |
| 1210 | 804 static void UpgradeDatabase(SQLite::Connection& db, |
| 805 EmbeddedResources::FileResourceId script) | |
| 806 { | |
| 807 std::string upgrade; | |
| 808 EmbeddedResources::GetFileResource(upgrade, script); | |
| 809 db.BeginTransaction(); | |
| 810 db.Execute(upgrade); | |
| 811 db.CommitTransaction(); | |
| 812 } | |
| 813 | |
| 183 | 814 |
| 815 DatabaseWrapper::DatabaseWrapper(const std::string& path, | |
| 816 IServerIndexListener& listener) : | |
| 817 listener_(listener) | |
| 818 { | |
| 819 db_.Open(path); | |
| 820 Open(); | |
| 821 } | |
| 822 | |
| 823 DatabaseWrapper::DatabaseWrapper(IServerIndexListener& listener) : | |
| 824 listener_(listener) | |
| 825 { | |
| 826 db_.OpenInMemory(); | |
| 827 Open(); | |
| 828 } | |
| 829 | |
| 830 void DatabaseWrapper::Open() | |
| 831 { | |
| 374 | 832 // Performance tuning of SQLite with PRAGMAs |
| 833 // http://www.sqlite.org/pragma.html | |
| 834 db_.Execute("PRAGMA SYNCHRONOUS=NORMAL;"); | |
| 835 db_.Execute("PRAGMA JOURNAL_MODE=WAL;"); | |
| 836 db_.Execute("PRAGMA LOCKING_MODE=EXCLUSIVE;"); | |
| 837 db_.Execute("PRAGMA WAL_AUTOCHECKPOINT=1000;"); | |
| 838 //db_.Execute("PRAGMA TEMP_STORE=memory"); | |
| 839 | |
| 183 | 840 if (!db_.DoesTableExist("GlobalProperties")) |
| 841 { | |
| 842 LOG(INFO) << "Creating the database"; | |
| 843 std::string query; | |
|
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844 EmbeddedResources::GetFileResource(query, EmbeddedResources::PREPARE_DATABASE); |
| 183 | 845 db_.Execute(query); |
| 846 } | |
| 847 | |
| 567 | 848 // Check the version of the database |
| 1239 | 849 std::string version; |
| 850 if (!LookupGlobalProperty(version, GlobalProperty_DatabaseSchemaVersion)) | |
| 851 { | |
| 852 version = "Unknown"; | |
| 853 } | |
| 854 | |
| 252 | 855 bool ok = false; |
| 856 try | |
| 857 { | |
| 858 LOG(INFO) << "Version of the Orthanc database: " << version; | |
| 859 unsigned int v = boost::lexical_cast<unsigned int>(version); | |
| 860 | |
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861 /** |
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862 * History of the database versions: |
| 1210 | 863 * - Orthanc before Orthanc 0.3.0 (inclusive) had no version |
| 864 * - Version 2: only Orthanc 0.3.1 | |
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865 * - Version 3: from Orthanc 0.3.2 to Orthanc 0.7.2 (inclusive) |
| 1210 | 866 * - Version 4: from Orthanc 0.7.3 to Orthanc 0.8.4 (inclusive) |
| 867 * - Version 5: from Orthanc 0.8.5 (inclusive) | |
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868 **/ |
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869 |
| 1158 | 870 // This version of Orthanc is only compatible with versions 3, 4 and 5 of the DB schema |
| 871 ok = (v == 3 || v == 4 || v == 5); | |
|
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872 |
|
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diff
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|
873 if (v == 3) |
|
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|
874 { |
|
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diff
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|
875 LOG(WARNING) << "Upgrading database version from 3 to 4"; |
| 1210 | 876 UpgradeDatabase(db_, EmbeddedResources::UPGRADE_DATABASE_3_TO_4); |
| 1158 | 877 v = 4; |
| 878 } | |
| 879 | |
| 880 if (v == 4) | |
| 881 { | |
| 882 LOG(WARNING) << "Upgrading database version from 4 to 5"; | |
| 1210 | 883 UpgradeDatabase(db_, EmbeddedResources::UPGRADE_DATABASE_4_TO_5); |
| 1158 | 884 v = 5; |
|
694
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|
885 } |
| 252 | 886 } |
| 887 catch (boost::bad_lexical_cast&) | |
| 888 { | |
| 1210 | 889 ok = false; |
| 252 | 890 } |
| 891 | |
| 892 if (!ok) | |
| 893 { | |
|
693
01d8611c4a60
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
894 LOG(ERROR) << "Incompatible version of the Orthanc database: " << version; |
| 252 | 895 throw OrthancException(ErrorCode_IncompatibleDatabaseVersion); |
| 896 } | |
| 897 | |
| 183 | 898 signalRemainingAncestor_ = new Internals::SignalRemainingAncestor; |
| 899 db_.Register(signalRemainingAncestor_); | |
| 900 db_.Register(new Internals::SignalFileDeleted(listener_)); | |
| 1158 | 901 db_.Register(new Internals::SignalResourceDeleted(listener_)); |
| 183 | 902 } |
| 238 | 903 |
| 904 uint64_t DatabaseWrapper::GetResourceCount(ResourceType resourceType) | |
| 905 { | |
| 906 SQLite::Statement s(db_, SQLITE_FROM_HERE, | |
| 907 "SELECT COUNT(*) FROM Resources WHERE resourceType=?"); | |
| 908 s.BindInt(0, resourceType); | |
| 909 | |
| 910 if (!s.Step()) | |
| 911 { | |
| 912 throw OrthancException(ErrorCode_InternalError); | |
| 913 } | |
| 914 | |
| 915 int64_t c = s.ColumnInt(0); | |
| 916 assert(!s.Step()); | |
| 917 | |
| 918 return c; | |
| 919 } | |
|
262
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920 |
|
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921 bool DatabaseWrapper::SelectPatientToRecycle(int64_t& internalId) |
|
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|
922 { |
|
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|
923 SQLite::Statement s(db_, SQLITE_FROM_HERE, |
|
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924 "SELECT patientId FROM PatientRecyclingOrder ORDER BY seq ASC LIMIT 1"); |
|
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925 |
|
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926 if (!s.Step()) |
|
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|
927 { |
|
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928 // No patient remaining or all the patients are protected |
|
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929 return false; |
|
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|
930 } |
|
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|
931 else |
|
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|
932 { |
|
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933 internalId = s.ColumnInt(0); |
|
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934 return true; |
|
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|
935 } |
|
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|
936 } |
|
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|
937 |
|
268
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|
938 bool DatabaseWrapper::SelectPatientToRecycle(int64_t& internalId, |
|
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939 int64_t patientIdToAvoid) |
|
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940 { |
|
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941 SQLite::Statement s(db_, SQLITE_FROM_HERE, |
|
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942 "SELECT patientId FROM PatientRecyclingOrder " |
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943 "WHERE patientId != ? ORDER BY seq ASC LIMIT 1"); |
| 585 | 944 s.BindInt64(0, patientIdToAvoid); |
|
268
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945 |
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946 if (!s.Step()) |
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947 { |
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948 // No patient remaining or all the patients are protected |
|
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949 return false; |
|
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|
950 } |
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951 else |
|
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|
952 { |
|
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953 internalId = s.ColumnInt(0); |
|
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954 return true; |
|
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955 } |
|
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|
956 } |
|
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|
957 |
|
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958 bool DatabaseWrapper::IsProtectedPatient(int64_t internalId) |
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959 { |
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960 SQLite::Statement s(db_, SQLITE_FROM_HERE, |
|
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961 "SELECT * FROM PatientRecyclingOrder WHERE patientId = ?"); |
| 585 | 962 s.BindInt64(0, internalId); |
|
262
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963 return !s.Step(); |
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964 } |
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965 |
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966 void DatabaseWrapper::SetProtectedPatient(int64_t internalId, |
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967 bool isProtected) |
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968 { |
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969 if (isProtected) |
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970 { |
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971 SQLite::Statement s(db_, SQLITE_FROM_HERE, "DELETE FROM PatientRecyclingOrder WHERE patientId=?"); |
| 585 | 972 s.BindInt64(0, internalId); |
|
262
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973 s.Run(); |
|
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974 } |
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975 else if (IsProtectedPatient(internalId)) |
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976 { |
|
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977 SQLite::Statement s(db_, SQLITE_FROM_HERE, "INSERT INTO PatientRecyclingOrder VALUES(NULL, ?)"); |
| 585 | 978 s.BindInt64(0, internalId); |
|
262
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979 s.Run(); |
|
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980 } |
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981 else |
|
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|
982 { |
|
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983 // Nothing to do: The patient is already unprotected |
|
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984 } |
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985 } |
| 310 | 986 |
| 987 | |
|
413
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988 |
|
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|
989 void DatabaseWrapper::ClearTable(const std::string& tableName) |
|
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990 { |
|
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991 db_.Execute("DELETE FROM " + tableName); |
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992 } |
| 513 | 993 |
| 994 | |
| 995 bool DatabaseWrapper::IsExistingResource(int64_t internalId) | |
| 996 { | |
| 997 SQLite::Statement s(db_, SQLITE_FROM_HERE, | |
| 998 "SELECT * FROM Resources WHERE internalId=?"); | |
| 585 | 999 s.BindInt64(0, internalId); |
| 513 | 1000 return s.Step(); |
| 1001 } | |
| 521 | 1002 |
| 1003 | |
| 1162 | 1004 void DatabaseWrapper::LookupIdentifier(std::list<int64_t>& result, |
| 1005 const DicomTag& tag, | |
| 1006 const std::string& value) | |
| 521 | 1007 { |
| 1162 | 1008 if (!tag.IsIdentifier()) |
| 1009 { | |
| 1010 throw OrthancException(ErrorCode_ParameterOutOfRange); | |
| 1011 } | |
| 1012 | |
| 521 | 1013 SQLite::Statement s(db_, SQLITE_FROM_HERE, |
| 1162 | 1014 "SELECT id FROM DicomIdentifiers WHERE tagGroup=? AND tagElement=? and value=?"); |
| 521 | 1015 |
| 1016 s.BindInt(0, tag.GetGroup()); | |
| 1017 s.BindInt(1, tag.GetElement()); | |
| 1018 s.BindString(2, value); | |
| 1019 | |
| 1020 result.clear(); | |
| 1021 | |
| 1022 while (s.Step()) | |
| 1023 { | |
| 1024 result.push_back(s.ColumnInt64(0)); | |
| 1025 } | |
| 1026 } | |
| 1027 | |
| 1028 | |
| 1162 | 1029 void DatabaseWrapper::LookupIdentifier(std::list<int64_t>& result, |
| 1030 const std::string& value) | |
| 521 | 1031 { |
| 1032 SQLite::Statement s(db_, SQLITE_FROM_HERE, | |
| 1162 | 1033 "SELECT id FROM DicomIdentifiers WHERE value=?"); |
| 521 | 1034 |
| 1035 s.BindString(0, value); | |
| 1036 | |
| 1037 result.clear(); | |
| 1038 | |
| 1039 while (s.Step()) | |
| 1040 { | |
| 1041 result.push_back(s.ColumnInt64(0)); | |
| 1042 } | |
| 1043 } | |
|
1006
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1044 |
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1045 |
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1046 void DatabaseWrapper::GetAllMetadata(std::map<MetadataType, std::string>& result, |
|
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1047 int64_t id) |
|
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1048 { |
|
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1049 result.clear(); |
|
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1050 |
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1051 SQLite::Statement s(db_, SQLITE_FROM_HERE, "SELECT type, value FROM Metadata WHERE id=?"); |
|
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1052 s.BindInt64(0, id); |
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|
1053 |
|
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|
1054 while (s.Step()) |
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1055 { |
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1056 MetadataType key = static_cast<MetadataType>(s.ColumnInt(0)); |
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1057 result[key] = s.ColumnString(1); |
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1058 } |
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1059 } |
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1060 |
| 183 | 1061 } |