Mercurial > hg > orthanc

annotate OrthancFramework/Sources/DicomFormat/DicomMap.h @ 5334:5b2a5cc64cb1

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
upgraded anonymization to Basic Profile of PS 3.15-2023b Table E.1-1
author Sebastien Jodogne <s.jodogne@gmail.com>
date Tue, 27 Jun 2023 15:12:39 +0200
parents 138e9d0c08c1
children 48b8dae6dc77
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
0
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1 /**
59
c996319e90bc renaming in Core
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 50
diff changeset
2 * Orthanc - A Lightweight, RESTful DICOM Store
1900
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1749
diff changeset
3 * Copyright (C) 2012-2016 Sebastien Jodogne, Medical Physics
1288
6e7e5ed91c2d upgrade to year 2015
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1228
diff changeset
4 * Department, University Hospital of Liege, Belgium
5185
0ea402b4d901 upgrade to year 2023
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5176
diff changeset
5 * Copyright (C) 2017-2023 Osimis S.A., Belgium
0ea402b4d901 upgrade to year 2023
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5176
diff changeset
6 * Copyright (C) 2021-2023 Sebastien Jodogne, ICTEAM UCLouvain, Belgium
0
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
7 *
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
8 * This program is free software: you can redistribute it and/or
4119
bf7b9edf6b81 re-licensing the OrthancFramework to LGPL, in order to license Stone of Orthanc under LGPL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4044
diff changeset
9 * modify it under the terms of the GNU Lesser General Public License
bf7b9edf6b81 re-licensing the OrthancFramework to LGPL, in order to license Stone of Orthanc under LGPL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4044
diff changeset
10 * as published by the Free Software Foundation, either version 3 of
bf7b9edf6b81 re-licensing the OrthancFramework to LGPL, in order to license Stone of Orthanc under LGPL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4044
diff changeset
11 * the License, or (at your option) any later version.
136
fe180eae201d openssl exception
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 80
diff changeset
12 *
0
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
13 * This program is distributed in the hope that it will be useful, but
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
14 * WITHOUT ANY WARRANTY; without even the implied warranty of
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
15 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
4119
bf7b9edf6b81 re-licensing the OrthancFramework to LGPL, in order to license Stone of Orthanc under LGPL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4044
diff changeset
16 * Lesser General Public License for more details.
0
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
17 *
4119
bf7b9edf6b81 re-licensing the OrthancFramework to LGPL, in order to license Stone of Orthanc under LGPL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4044
diff changeset
18 * You should have received a copy of the GNU Lesser General Public
bf7b9edf6b81 re-licensing the OrthancFramework to LGPL, in order to license Stone of Orthanc under LGPL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4044
diff changeset
19 * License along with this program. If not, see
bf7b9edf6b81 re-licensing the OrthancFramework to LGPL, in order to license Stone of Orthanc under LGPL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4044
diff changeset
20 * <http://www.gnu.org/licenses/>.
0
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
21 **/
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
22
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
23
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
24 #pragma once
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
25
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
26 #include "DicomTag.h"
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
27 #include "DicomValue.h"
562
f64e3838d6e1 refactoring enumerations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 398
diff changeset
28 #include "../Enumerations.h"
0
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
29
567
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 562
diff changeset
30 #include <set>
0
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
31 #include <map>
4392
3af1d763763a confining Json::Reader and Json::*Writer into Toolbox
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4296
diff changeset
32 #include <json/value.h>
0
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
33
59
c996319e90bc renaming in Core
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 50
diff changeset
34 namespace Orthanc
0
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
35 {
3992
f9863630ec7f working on the shared library for Orthanc framework
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3840
diff changeset
36 class ORTHANC_PUBLIC DicomMap : public boost::noncopyable
0
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
37 {
3651
46cb00e4adbb DicomMap::DumpMainDicomTags() and DicomMap::ParseMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3650
diff changeset
38 public:
46cb00e4adbb DicomMap::DumpMainDicomTags() and DicomMap::ParseMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3650
diff changeset
39 typedef std::map<DicomTag, DicomValue*> Content;
4932
b7ce2bb6b881 refactored the list of MainDicomTags to be able to change it dynamicaly. Unit tests and Integration tests ok
Alain Mazy <am@osimis.io>
parents: 4870
diff changeset
40
0
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
41 private:
4932
b7ce2bb6b881 refactored the list of MainDicomTags to be able to change it dynamicaly. Unit tests and Integration tests ok
Alain Mazy <am@osimis.io>
parents: 4870
diff changeset
42 class MainDicomTagsConfiguration;
0
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
43 friend class DicomArray;
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
44 friend class FromDcmtkBridge;
2202
9b373b7d6713 Fix handling of encodings in C-FIND requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2008
diff changeset
45 friend class ParsedDicomFile;
0
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
46
3651
46cb00e4adbb DicomMap::DumpMainDicomTags() and DicomMap::ParseMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3650
diff changeset
47 Content content_;
0
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
48
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
49 // Warning: This takes the ownership of "value"
3651
46cb00e4adbb DicomMap::DumpMainDicomTags() and DicomMap::ParseMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3650
diff changeset
50 void SetValueInternal(uint16_t group,
46cb00e4adbb DicomMap::DumpMainDicomTags() and DicomMap::ParseMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3650
diff changeset
51 uint16_t element,
46cb00e4adbb DicomMap::DumpMainDicomTags() and DicomMap::ParseMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3650
diff changeset
52 DicomValue* value);
0
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
53
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
54 public:
4296
3b70a2e6a06c moving inline methods to source files for ABI compatibility
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4119
diff changeset
55 ~DicomMap();
0
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
56
5195
32df369198ac fix /tools/reset crashing when ExtraMainDicomTags were defined
Alain Mazy <am@osimis.io>
parents: 5185
diff changeset
57 static void ResetDefaultMainDicomTags();
32df369198ac fix /tools/reset crashing when ExtraMainDicomTags were defined
Alain Mazy <am@osimis.io>
parents: 5185
diff changeset
58
4296
3b70a2e6a06c moving inline methods to source files for ABI compatibility
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4119
diff changeset
59 size_t GetSize() const;
1310
61ce8147f30d custom database back-end
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1288
diff changeset
60
61ce8147f30d custom database back-end
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1288
diff changeset
61 DicomMap* Clone() const;
0
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
62
1310
61ce8147f30d custom database back-end
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1288
diff changeset
63 void Assign(const DicomMap& other);
0
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
64
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
65 void Clear();
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
66
4296
3b70a2e6a06c moving inline methods to source files for ABI compatibility
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4119
diff changeset
67 void SetNullValue(uint16_t group,
3b70a2e6a06c moving inline methods to source files for ABI compatibility
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4119
diff changeset
68 uint16_t element);
2863
da12ba232119 serialization of DicomMap
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2447
diff changeset
69
4296
3b70a2e6a06c moving inline methods to source files for ABI compatibility
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4119
diff changeset
70 void SetNullValue(const DicomTag& tag);
2863
da12ba232119 serialization of DicomMap
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2447
diff changeset
71
4296
3b70a2e6a06c moving inline methods to source files for ABI compatibility
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4119
diff changeset
72 void SetValue(uint16_t group,
3b70a2e6a06c moving inline methods to source files for ABI compatibility
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4119
diff changeset
73 uint16_t element,
3b70a2e6a06c moving inline methods to source files for ABI compatibility
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4119
diff changeset
74 const DicomValue& value);
0
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
75
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
76 void SetValue(const DicomTag& tag,
4296
3b70a2e6a06c moving inline methods to source files for ABI compatibility
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4119
diff changeset
77 const DicomValue& value);
0
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
78
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
79 void SetValue(const DicomTag& tag,
2007
655489d9165d DicomMap::ParseDicomMetaInformation()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1900
diff changeset
80 const std::string& str,
4296
3b70a2e6a06c moving inline methods to source files for ABI compatibility
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4119
diff changeset
81 bool isBinary);
0
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
82
4296
3b70a2e6a06c moving inline methods to source files for ABI compatibility
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4119
diff changeset
83 void SetValue(uint16_t group,
3b70a2e6a06c moving inline methods to source files for ABI compatibility
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4119
diff changeset
84 uint16_t element,
3b70a2e6a06c moving inline methods to source files for ABI compatibility
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4119
diff changeset
85 const std::string& str,
3b70a2e6a06c moving inline methods to source files for ABI compatibility
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4119
diff changeset
86 bool isBinary);
0
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
87
5323
138e9d0c08c1 added DicomMap::GuessPixelDataValueRepresentation()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5195
diff changeset
88 void SetSequenceValue(const DicomTag& tag,
138e9d0c08c1 added DicomMap::GuessPixelDataValueRepresentation()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5195
diff changeset
89 const Json::Value& value);
5044
6fed78e13233 Refactored DicomMap to handle sequences when needed
Alain Mazy <am@osimis.io>
parents: 5040
diff changeset
90
4296
3b70a2e6a06c moving inline methods to source files for ABI compatibility
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4119
diff changeset
91 bool HasTag(uint16_t group, uint16_t element) const;
0
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
92
4296
3b70a2e6a06c moving inline methods to source files for ABI compatibility
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4119
diff changeset
93 bool HasTag(const DicomTag& tag) const;
3b70a2e6a06c moving inline methods to source files for ABI compatibility
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4119
diff changeset
94
3b70a2e6a06c moving inline methods to source files for ABI compatibility
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4119
diff changeset
95 const DicomValue& GetValue(uint16_t group, uint16_t element) const;
0
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
96
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
97 const DicomValue& GetValue(const DicomTag& tag) const;
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
98
1228
e0f7014d39a4 Instances without PatientID are now allowed
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1206
diff changeset
99 // DO NOT delete the returned value!
4296
3b70a2e6a06c moving inline methods to source files for ABI compatibility
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4119
diff changeset
100 const DicomValue* TestAndGetValue(uint16_t group, uint16_t element) const;
80
6212bf978584 status of series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 59
diff changeset
101
1228
e0f7014d39a4 Instances without PatientID are now allowed
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1206
diff changeset
102 // DO NOT delete the returned value!
80
6212bf978584 status of series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 59
diff changeset
103 const DicomValue* TestAndGetValue(const DicomTag& tag) const;
6212bf978584 status of series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 59
diff changeset
104
0
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
105 void Remove(const DicomTag& tag);
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
106
5036
877bc3b96476 Handle Dicom sequences in ExtraMainDicomTags and save them in the 'MainDicomSequences' metadata
Alain Mazy <am@osimis.io>
parents: 4940
diff changeset
107 void RemoveTags(const std::set<DicomTag>& tags);
877bc3b96476 Handle Dicom sequences in ExtraMainDicomTags and save them in the 'MainDicomSequences' metadata
Alain Mazy <am@osimis.io>
parents: 4940
diff changeset
108
0
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
109 void ExtractPatientInformation(DicomMap& result) const;
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
110
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
111 void ExtractStudyInformation(DicomMap& result) const;
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
112
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
113 void ExtractSeriesInformation(DicomMap& result) const;
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
114
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
115 void ExtractInstanceInformation(DicomMap& result) const;
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
116
4935
acd3f72e2a21 split ExpandResource in 2: read from DB and serialize to json. This will allow us to merge requested tags from both the DB and the file system
Alain Mazy <am@osimis.io>
parents: 4933
diff changeset
117 void ExtractResourceInformation(DicomMap& result, ResourceType level) const;
acd3f72e2a21 split ExpandResource in 2: read from DB and serialize to json. This will allow us to merge requested tags from both the DB and the file system
Alain Mazy <am@osimis.io>
parents: 4933
diff changeset
118
4936
8422e4f99a18 Handling RequestedTags in ExpandResource -> read parent main dicom tags if required. Not yet getting missing tags from file. Integration tests ok
Alain Mazy <am@osimis.io>
parents: 4935
diff changeset
119 void ExtractTags(DicomMap& result, const std::set<DicomTag>& tags) const;
8422e4f99a18 Handling RequestedTags in ExpandResource -> read parent main dicom tags if required. Not yet getting missing tags from file. Integration tests ok
Alain Mazy <am@osimis.io>
parents: 4935
diff changeset
120
5044
6fed78e13233 Refactored DicomMap to handle sequences when needed
Alain Mazy <am@osimis.io>
parents: 5040
diff changeset
121 void ExtractSequences(DicomMap& result) const;
6fed78e13233 Refactored DicomMap to handle sequences when needed
Alain Mazy <am@osimis.io>
parents: 5040
diff changeset
122
0
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
123 static void SetupFindPatientTemplate(DicomMap& result);
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
124
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
125 static void SetupFindStudyTemplate(DicomMap& result);
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
126
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
127 static void SetupFindSeriesTemplate(DicomMap& result);
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
128
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
129 static void SetupFindInstanceTemplate(DicomMap& result);
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
130
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
131 void CopyTagIfExists(const DicomMap& source,
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
132 const DicomTag& tag);
562
f64e3838d6e1 refactoring enumerations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 398
diff changeset
133
f64e3838d6e1 refactoring enumerations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 398
diff changeset
134 static bool IsMainDicomTag(const DicomTag& tag, ResourceType level);
f64e3838d6e1 refactoring enumerations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 398
diff changeset
135
f64e3838d6e1 refactoring enumerations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 398
diff changeset
136 static bool IsMainDicomTag(const DicomTag& tag);
567
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 562
diff changeset
137
4940
304514ce84ee tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags'
Alain Mazy <am@osimis.io>
parents: 4936
diff changeset
138 static bool IsComputedTag(const DicomTag& tag, ResourceType level);
304514ce84ee tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags'
Alain Mazy <am@osimis.io>
parents: 4936
diff changeset
139
304514ce84ee tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags'
Alain Mazy <am@osimis.io>
parents: 4936
diff changeset
140 static bool IsComputedTag(const DicomTag& tag);
304514ce84ee tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags'
Alain Mazy <am@osimis.io>
parents: 4936
diff changeset
141
304514ce84ee tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags'
Alain Mazy <am@osimis.io>
parents: 4936
diff changeset
142 static bool HasOnlyComputedTags(const std::set<DicomTag>& tags);
304514ce84ee tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags'
Alain Mazy <am@osimis.io>
parents: 4936
diff changeset
143
304514ce84ee tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags'
Alain Mazy <am@osimis.io>
parents: 4936
diff changeset
144 static bool HasComputedTags(const std::set<DicomTag>& tags, ResourceType level);
304514ce84ee tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags'
Alain Mazy <am@osimis.io>
parents: 4936
diff changeset
145
304514ce84ee tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags'
Alain Mazy <am@osimis.io>
parents: 4936
diff changeset
146 static bool HasComputedTags(const std::set<DicomTag>& tags);
304514ce84ee tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags'
Alain Mazy <am@osimis.io>
parents: 4936
diff changeset
147
5175
48005e522bd6 start fixing thread safety issues with DicomMap
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5044
diff changeset
148 static void GetMainDicomTags(std::set<DicomTag>& target,
48005e522bd6 start fixing thread safety issues with DicomMap
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5044
diff changeset
149 ResourceType level);
4932
b7ce2bb6b881 refactored the list of MainDicomTags to be able to change it dynamicaly. Unit tests and Integration tests ok
Alain Mazy <am@osimis.io>
parents: 4870
diff changeset
150
4933
312c6f4da888 adding MainDicomTags signatures
Alain Mazy <am@osimis.io>
parents: 4932
diff changeset
151 // returns a string uniquely identifying the list of main dicom tags for a level
5176
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5175
diff changeset
152 static std::string GetMainDicomTagsSignature(ResourceType level);
4933
312c6f4da888 adding MainDicomTags signatures
Alain Mazy <am@osimis.io>
parents: 4932
diff changeset
153
5176
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5175
diff changeset
154 static std::string GetDefaultMainDicomTagsSignature(ResourceType level);
4933
312c6f4da888 adding MainDicomTags signatures
Alain Mazy <am@osimis.io>
parents: 4932
diff changeset
155
5176
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5175
diff changeset
156 static void GetAllMainDicomTags(std::set<DicomTag>& target);
567
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 562
diff changeset
157
4932
b7ce2bb6b881 refactored the list of MainDicomTags to be able to change it dynamicaly. Unit tests and Integration tests ok
Alain Mazy <am@osimis.io>
parents: 4870
diff changeset
158 // adds a main dicom tag to the definition of main dicom tags for each level.
b7ce2bb6b881 refactored the list of MainDicomTags to be able to change it dynamicaly. Unit tests and Integration tests ok
Alain Mazy <am@osimis.io>
parents: 4870
diff changeset
159 // this should be done once at startup before you use MainDicomTags methods
5040
1c08cd68250a removed the 'name' of MainDicomTags to simplify code -> DicomMap::ParseMainDicomTags has been deprecated and one should use DicomMap::FromDicomAsJson on 'full' formatted tags
Alain Mazy <am@osimis.io>
parents: 5038
diff changeset
160 static void AddMainDicomTag(const DicomTag& tag, ResourceType level);
1206
f5b0207967bc Fix issue 19 (YBR_FULL are decoded incorrectly)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 689
diff changeset
161
1360
0649c5aef34a DicomFindQuery
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1331
diff changeset
162 void GetTags(std::set<DicomTag>& tags) const;
1749
99f4a05f39fa various types of constraints
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1737
diff changeset
163
3840
e7003b2203a7 fixing signature of DicomMap::ParseDicomMetaInformation()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3771
diff changeset
164 static bool IsDicomFile(const void* dicom,
3771
74889e6f6d68 fix memory issues if parsing invalid DICOM file
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3690
diff changeset
165 size_t size);
74889e6f6d68 fix memory issues if parsing invalid DICOM file
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3690
diff changeset
166
2007
655489d9165d DicomMap::ParseDicomMetaInformation()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1900
diff changeset
167 static bool ParseDicomMetaInformation(DicomMap& result,
3840
e7003b2203a7 fixing signature of DicomMap::ParseDicomMetaInformation()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3771
diff changeset
168 const void* dicom,
2007
655489d9165d DicomMap::ParseDicomMetaInformation()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1900
diff changeset
169 size_t size);
2380
96b3ec054b69 reorganization in macros
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2244
diff changeset
170
96b3ec054b69 reorganization in macros
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2244
diff changeset
171 void LogMissingTagsForStore() const;
2412
cad393b41bc3 handy shortcuts in DicomMap
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2380
diff changeset
172
4501
11c2ddb4e2ca FromDcmtkBridge::LogMissingTagsForStore()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4437
diff changeset
173 static void LogMissingTagsForStore(const std::string& patientId,
11c2ddb4e2ca FromDcmtkBridge::LogMissingTagsForStore()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4437
diff changeset
174 const std::string& studyInstanceUid,
11c2ddb4e2ca FromDcmtkBridge::LogMissingTagsForStore()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4437
diff changeset
175 const std::string& seriesInstanceUid,
11c2ddb4e2ca FromDcmtkBridge::LogMissingTagsForStore()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4437
diff changeset
176 const std::string& sopInstanceUid);
11c2ddb4e2ca FromDcmtkBridge::LogMissingTagsForStore()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4437
diff changeset
177
3518
a57c8163d9ae DicomMap::GetStringValue()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3496
diff changeset
178 bool LookupStringValue(std::string& result,
a57c8163d9ae DicomMap::GetStringValue()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3496
diff changeset
179 const DicomTag& tag,
a57c8163d9ae DicomMap::GetStringValue()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3496
diff changeset
180 bool allowBinary) const;
2412
cad393b41bc3 handy shortcuts in DicomMap
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2380
diff changeset
181
cad393b41bc3 handy shortcuts in DicomMap
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2380
diff changeset
182 bool ParseInteger32(int32_t& result,
cad393b41bc3 handy shortcuts in DicomMap
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2380
diff changeset
183 const DicomTag& tag) const;
cad393b41bc3 handy shortcuts in DicomMap
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2380
diff changeset
184
cad393b41bc3 handy shortcuts in DicomMap
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2380
diff changeset
185 bool ParseInteger64(int64_t& result,
cad393b41bc3 handy shortcuts in DicomMap
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2380
diff changeset
186 const DicomTag& tag) const;
cad393b41bc3 handy shortcuts in DicomMap
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2380
diff changeset
187
cad393b41bc3 handy shortcuts in DicomMap
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2380
diff changeset
188 bool ParseUnsignedInteger32(uint32_t& result,
cad393b41bc3 handy shortcuts in DicomMap
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2380
diff changeset
189 const DicomTag& tag) const;
cad393b41bc3 handy shortcuts in DicomMap
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2380
diff changeset
190
cad393b41bc3 handy shortcuts in DicomMap
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2380
diff changeset
191 bool ParseUnsignedInteger64(uint64_t& result,
2863
da12ba232119 serialization of DicomMap
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2447
diff changeset
192 const DicomTag& tag) const;
2412
cad393b41bc3 handy shortcuts in DicomMap
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2380
diff changeset
193
cad393b41bc3 handy shortcuts in DicomMap
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2380
diff changeset
194 bool ParseFloat(float& result,
2863
da12ba232119 serialization of DicomMap
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2447
diff changeset
195 const DicomTag& tag) const;
2412
cad393b41bc3 handy shortcuts in DicomMap
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2380
diff changeset
196
3690
a9ce35d67c3c implementation of "/instances/.../rendered" for grayscale images
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3678
diff changeset
197 bool ParseFirstFloat(float& result,
a9ce35d67c3c implementation of "/instances/.../rendered" for grayscale images
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3678
diff changeset
198 const DicomTag& tag) const;
a9ce35d67c3c implementation of "/instances/.../rendered" for grayscale images
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3678
diff changeset
199
2412
cad393b41bc3 handy shortcuts in DicomMap
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2380
diff changeset
200 bool ParseDouble(double& result,
2863
da12ba232119 serialization of DicomMap
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2447
diff changeset
201 const DicomTag& tag) const;
da12ba232119 serialization of DicomMap
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2447
diff changeset
202
5040
1c08cd68250a removed the 'name' of MainDicomTags to simplify code -> DicomMap::ParseMainDicomTags has been deprecated and one should use DicomMap::FromDicomAsJson on 'full' formatted tags
Alain Mazy <am@osimis.io>
parents: 5038
diff changeset
203 void FromDicomAsJson(const Json::Value& dicomAsJson,
5044
6fed78e13233 Refactored DicomMap to handle sequences when needed
Alain Mazy <am@osimis.io>
parents: 5040
diff changeset
204 bool append = false,
6fed78e13233 Refactored DicomMap to handle sequences when needed
Alain Mazy <am@osimis.io>
parents: 5040
diff changeset
205 bool parseSequences = false);
3006
0e1755e5efd0 DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3005
diff changeset
206
0e1755e5efd0 DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3005
diff changeset
207 void Merge(const DicomMap& other);
0e1755e5efd0 DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3005
diff changeset
208
3678
26c6d47467a9 DicomMap::MergeMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3651
diff changeset
209 void MergeMainDicomTags(const DicomMap& other,
26c6d47467a9 DicomMap::MergeMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3651
diff changeset
210 ResourceType level);
26c6d47467a9 DicomMap::MergeMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3651
diff changeset
211
3015
abe49ca61cd5 On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3006
diff changeset
212 void ExtractMainDicomTags(const DicomMap& other);
abe49ca61cd5 On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3006
diff changeset
213
abe49ca61cd5 On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3006
diff changeset
214 bool HasOnlyMainDicomTags() const;
3005
8265a6b56100 DicomMap::FromDicomAsJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2863
diff changeset
215
2863
da12ba232119 serialization of DicomMap
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2447
diff changeset
216 void Serialize(Json::Value& target) const;
da12ba232119 serialization of DicomMap
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2447
diff changeset
217
da12ba232119 serialization of DicomMap
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2447
diff changeset
218 void Unserialize(const Json::Value& source);
3496
109631ed3564 DicomMap::FromDicomWeb()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3060
diff changeset
219
109631ed3564 DicomMap::FromDicomWeb()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3060
diff changeset
220 void FromDicomWeb(const Json::Value& source);
3518
a57c8163d9ae DicomMap::GetStringValue()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3496
diff changeset
221
a57c8163d9ae DicomMap::GetStringValue()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3496
diff changeset
222 std::string GetStringValue(const DicomTag& tag,
a57c8163d9ae DicomMap::GetStringValue()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3496
diff changeset
223 const std::string& defaultValue,
a57c8163d9ae DicomMap::GetStringValue()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3496
diff changeset
224 bool allowBinary) const;
a57c8163d9ae DicomMap::GetStringValue()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3496
diff changeset
225
3551
173c7f363d8f DicomMap::RemoveBinaryTags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3518
diff changeset
226 void RemoveBinaryTags();
173c7f363d8f DicomMap::RemoveBinaryTags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3518
diff changeset
227
5044
6fed78e13233 Refactored DicomMap to handle sequences when needed
Alain Mazy <am@osimis.io>
parents: 5040
diff changeset
228 void RemoveSequences();
6fed78e13233 Refactored DicomMap to handle sequences when needed
Alain Mazy <am@osimis.io>
parents: 5040
diff changeset
229
3650
e5811a9f8df0 removing DicomMap::LoadMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3640
diff changeset
230 void DumpMainDicomTags(Json::Value& target,
e5811a9f8df0 removing DicomMap::LoadMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3640
diff changeset
231 ResourceType level) const;
e5811a9f8df0 removing DicomMap::LoadMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3640
diff changeset
232
5323
138e9d0c08c1 added DicomMap::GuessPixelDataValueRepresentation()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5195
diff changeset
233 ValueRepresentation GuessPixelDataValueRepresentation(DicomTransferSyntax transferSyntax) const;
138e9d0c08c1 added DicomMap::GuessPixelDataValueRepresentation()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5195
diff changeset
234
3518
a57c8163d9ae DicomMap::GetStringValue()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3496
diff changeset
235 void Print(FILE* fp) const; // For debugging only
0
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
236 };
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
237 }