Mercurial > hg > orthanc

annotate OrthancServer/OrthancRestApi/OrthancRestArchive.cpp @ 2142:5a8840920121

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reorganization
author Sebastien Jodogne <s.jodogne@gmail.com>
date Wed, 09 Nov 2016 16:26:40 +0100
parents aa4b8895cd23
children a3a65de1840f
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1 /**
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2 * Orthanc - A Lightweight, RESTful DICOM Store
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3 * Copyright (C) 2012-2016 Sebastien Jodogne, Medical Physics
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4 * Department, University Hospital of Liege, Belgium
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5 *
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6 * This program is free software: you can redistribute it and/or
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7 * modify it under the terms of the GNU General Public License as
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8 * published by the Free Software Foundation, either version 3 of the
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9 * License, or (at your option) any later version.
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10 *
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11 * In addition, as a special exception, the copyright holders of this
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12 * program give permission to link the code of its release with the
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13 * OpenSSL project's "OpenSSL" library (or with modified versions of it
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14 * that use the same license as the "OpenSSL" library), and distribute
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15 * the linked executables. You must obey the GNU General Public License
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16 * in all respects for all of the code used other than "OpenSSL". If you
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17 * modify file(s) with this exception, you may extend this exception to
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18 * your version of the file(s), but you are not obligated to do so. If
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19 * you do not wish to do so, delete this exception statement from your
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20 * version. If you delete this exception statement from all source files
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21 * in the program, then also delete it here.
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22 *
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23 * This program is distributed in the hope that it will be useful, but
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24 * WITHOUT ANY WARRANTY; without even the implied warranty of
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25 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
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26 * General Public License for more details.
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27 *
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28 * You should have received a copy of the GNU General Public License
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29 * along with this program. If not, see <http://www.gnu.org/licenses/>.
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30 **/
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31
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32
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33 #include "../PrecompiledHeadersServer.h"
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34 #include "OrthancRestApi.h"
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35
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36 #include "../DicomDirWriter.h"
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37 #include "../../Core/FileStorage/StorageAccessor.h"
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38 #include "../../Core/Compression/HierarchicalZipWriter.h"
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39 #include "../../Core/HttpServer/FilesystemHttpSender.h"
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40 #include "../../Core/Logging.h"
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41 #include "../../Core/TemporaryFile.h"
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42 #include "../ServerContext.h"
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43
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44 #include <stdio.h>
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45
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46 #if defined(_MSC_VER)
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47 #define snprintf _snprintf
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48 #endif
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49
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50 static const uint64_t MEGA_BYTES = 1024 * 1024;
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51 static const uint64_t GIGA_BYTES = 1024 * 1024 * 1024;
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52
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53 namespace Orthanc
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54 {
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55 // Download of ZIP files ----------------------------------------------------
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56
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57 static bool IsZip64Required(uint64_t uncompressedSize,
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58 unsigned int countInstances)
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59 {
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60 static const uint64_t SAFETY_MARGIN = 64 * MEGA_BYTES;
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61
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62 /**
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63 * Determine whether ZIP64 is required. Original ZIP format can
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64 * store up to 2GB of data (some implementation supporting up to
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65 * 4GB of data), and up to 65535 files.
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66 * https://en.wikipedia.org/wiki/Zip_(file_format)#ZIP64
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67 **/
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68
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69 const bool isZip64 = (uncompressedSize >= 2 * GIGA_BYTES - SAFETY_MARGIN ||
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70 countInstances >= 65535);
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71
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72 LOG(INFO) << "Creating a ZIP file with " << countInstances << " files of size "
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73 << (uncompressedSize / MEGA_BYTES) << "MB using the "
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74 << (isZip64 ? "ZIP64" : "ZIP32") << " file format";
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75
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76 return isZip64;
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77 }
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78
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79
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80 namespace
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81 {
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82 class ResourceIdentifiers
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83 {
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84 private:
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85 ResourceType level_;
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86 std::string patient_;
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87 std::string study_;
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88 std::string series_;
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89 std::string instance_;
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90
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91 static void GoToParent(ServerIndex& index,
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92 std::string& current)
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93 {
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94 std::string tmp;
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95
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96 if (index.LookupParent(tmp, current))
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97 {
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98 current = tmp;
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99 }
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100 else
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101 {
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102 throw OrthancException(ErrorCode_UnknownResource);
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103 }
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104 }
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105
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106
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107 public:
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108 ResourceIdentifiers(ServerIndex& index,
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109 const std::string& publicId)
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110 {
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111 if (!index.LookupResourceType(level_, publicId))
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112 {
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113 throw OrthancException(ErrorCode_UnknownResource);
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114 }
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115
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116 std::string current = publicId;;
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117 switch (level_) // Do not add "break" below!
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118 {
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119 case ResourceType_Instance:
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120 instance_ = current;
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121 GoToParent(index, current);
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122
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123 case ResourceType_Series:
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124 series_ = current;
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125 GoToParent(index, current);
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126
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127 case ResourceType_Study:
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128 study_ = current;
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129 GoToParent(index, current);
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130
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131 case ResourceType_Patient:
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132 patient_ = current;
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133 break;
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134
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135 default:
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136 throw OrthancException(ErrorCode_InternalError);
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137 }
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138 }
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139
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140 ResourceType GetLevel() const
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141 {
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142 return level_;
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143 }
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144
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145 const std::string& GetIdentifier(ResourceType level) const
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146 {
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147 // Some sanity check to ensure enumerations are not altered
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148 assert(ResourceType_Patient < ResourceType_Study);
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149 assert(ResourceType_Study < ResourceType_Series);
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150 assert(ResourceType_Series < ResourceType_Instance);
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151
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152 if (level > level_)
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153 {
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154 throw OrthancException(ErrorCode_InternalError);
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155 }
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156
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157 switch (level)
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158 {
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159 case ResourceType_Patient:
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160 return patient_;
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161
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162 case ResourceType_Study:
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163 return study_;
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164
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165 case ResourceType_Series:
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166 return series_;
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167
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168 case ResourceType_Instance:
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169 return instance_;
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170
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171 default:
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172 throw OrthancException(ErrorCode_InternalError);
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173 }
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174 }
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175 };
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176
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177
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178 class IArchiveVisitor : public boost::noncopyable
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179 {
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180 public:
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181 virtual ~IArchiveVisitor()
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182 {
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183 }
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184
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185 virtual void Open(ResourceType level,
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186 const std::string& publicId) = 0;
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187
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188 virtual void Close() = 0;
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189
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190 virtual void AddInstance(const std::string& instanceId,
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191 const FileInfo& dicom) = 0;
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192 };
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193
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194
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195 class ArchiveIndex
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196 {
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197 private:
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198 struct Instance
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199 {
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200 std::string id_;
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201 FileInfo dicom_;
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202
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203 Instance(const std::string& id,
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204 const FileInfo& dicom) :
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205 id_(id), dicom_(dicom)
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206 {
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207 }
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208 };
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209
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210 // A "NULL" value for ArchiveIndex indicates a non-expanded node
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211 typedef std::map<std::string, ArchiveIndex*> Resources;
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212
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213 ResourceType level_;
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214 Resources resources_; // Only at patient/study/series level
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215 std::list<Instance> instances_; // Only at instance level
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216
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217
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218 void AddResourceToExpand(ServerIndex& index,
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219 const std::string& id)
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220 {
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221 if (level_ == ResourceType_Instance)
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222 {
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223 FileInfo tmp;
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224 if (index.LookupAttachment(tmp, id, FileContentType_Dicom))
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225 {
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226 instances_.push_back(Instance(id, tmp));
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227 }
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228 }
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229 else
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230 {
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231 resources_[id] = NULL;
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232 }
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233 }
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234
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235
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236 public:
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237 ArchiveIndex(ResourceType level) :
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238 level_(level)
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239 {
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240 }
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241
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242 ~ArchiveIndex()
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243 {
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244 for (Resources::iterator it = resources_.begin();
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245 it != resources_.end(); ++it)
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246 {
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247 delete it->second;
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248 }
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249 }
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250
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251
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252 void Add(ServerIndex& index,
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253 const ResourceIdentifiers& resource)
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254 {
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255 const std::string& id = resource.GetIdentifier(level_);
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256 Resources::iterator previous = resources_.find(id);
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257
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258 if (level_ == ResourceType_Instance)
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259 {
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260 AddResourceToExpand(index, id);
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261 }
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262 else if (resource.GetLevel() == level_)
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263 {
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264 // Mark this resource for further expansion
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265 if (previous != resources_.end())
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266 {
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267 delete previous->second;
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268 }
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269
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270 resources_[id] = NULL;
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271 }
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272 else if (previous == resources_.end())
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273 {
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274 // This is the first time we meet this resource
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275 std::auto_ptr<ArchiveIndex> child(new ArchiveIndex(GetChildResourceType(level_)));
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276 child->Add(index, resource);
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277 resources_[id] = child.release();
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278 }
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279 else if (previous->second != NULL)
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280 {
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281 previous->second->Add(index, resource);
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282 }
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283 else
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284 {
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285 // Nothing to do: This item is marked for further expansion
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286 }
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287 }
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288
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289
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290 void Expand(ServerIndex& index)
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291 {
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292 if (level_ == ResourceType_Instance)
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293 {
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294 // Expanding an instance node makes no sense
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295 return;
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296 }
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297
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298 for (Resources::iterator it = resources_.begin();
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299 it != resources_.end(); ++it)
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300 {
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301 if (it->second == NULL)
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302 {
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303 // This is resource is marked for expansion
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304 std::list<std::string> children;
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305 index.GetChildren(children, it->first);
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306
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307 std::auto_ptr<ArchiveIndex> child(new ArchiveIndex(GetChildResourceType(level_)));
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308
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309 for (std::list<std::string>::const_iterator
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310 it2 = children.begin(); it2 != children.end(); ++it2)
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311 {
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312 child->AddResourceToExpand(index, *it2);
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313 }
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314
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315 it->second = child.release();
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316 }
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317
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318 assert(it->second != NULL);
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319 it->second->Expand(index);
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320 }
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321 }
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322
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323
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324 void Apply(IArchiveVisitor& visitor) const
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325 {
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326 if (level_ == ResourceType_Instance)
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327 {
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328 for (std::list<Instance>::const_iterator
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329 it = instances_.begin(); it != instances_.end(); ++it)
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330 {
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331 visitor.AddInstance(it->id_, it->dicom_);
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332 }
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333 }
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334 else
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335 {
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336 for (Resources::const_iterator it = resources_.begin();
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337 it != resources_.end(); ++it)
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338 {
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339 assert(it->second != NULL); // There must have been a call to "Expand()"
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340 visitor.Open(level_, it->first);
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341 it->second->Apply(visitor);
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342 visitor.Close();
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343 }
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344 }
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345 }
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346 };
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347
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348
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349 class StatisticsVisitor : public IArchiveVisitor
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350 {
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351 private:
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352 uint64_t size_;
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353 unsigned int instances_;
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354
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355 public:
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356 StatisticsVisitor() : size_(0), instances_(0)
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357 {
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358 }
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359
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360 uint64_t GetUncompressedSize() const
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361 {
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362 return size_;
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363 }
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364
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365 unsigned int GetInstancesCount() const
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366 {
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367 return instances_;
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368 }
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369
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370 virtual void Open(ResourceType level,
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371 const std::string& publicId)
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372 {
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373 }
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374
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375 virtual void Close()
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376 {
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377 }
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378
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379 virtual void AddInstance(const std::string& instanceId,
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380 const FileInfo& dicom)
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381 {
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382 instances_ ++;
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383 size_ += dicom.GetUncompressedSize();
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384 }
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385 };
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386
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387
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388 class PrintVisitor : public IArchiveVisitor
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389 {
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390 private:
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391 std::ostream& out_;
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392 std::string indent_;
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393
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394 public:
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395 PrintVisitor(std::ostream& out) : out_(out)
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396 {
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397 }
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398
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399 virtual void Open(ResourceType level,
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400 const std::string& publicId)
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401 {
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402 switch (level)
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403 {
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404 case ResourceType_Patient: indent_ = ""; break;
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405 case ResourceType_Study: indent_ = " "; break;
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406 case ResourceType_Series: indent_ = " "; break;
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407 default:
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408 throw OrthancException(ErrorCode_InternalError);
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409 }
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410
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411 out_ << indent_ << publicId << std::endl;
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412 }
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413
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414 virtual void Close()
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415 {
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416 }
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Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1774
diff changeset
417
1861e410a9d7 visitors
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1774
diff changeset
418 virtual void AddInstance(const std::string& instanceId,
1861e410a9d7 visitors
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1774
diff changeset
419 const FileInfo& dicom)
1861e410a9d7 visitors
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1774
diff changeset
420 {
1861e410a9d7 visitors
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1774
diff changeset
421 out_ << " " << instanceId << std::endl;
1774
784a6b92d2f1 start of refactoring the creation of archives
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1623
diff changeset
422 }
784a6b92d2f1 start of refactoring the creation of archives
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1623
diff changeset
423 };
1778
776573e592da create media refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1777
diff changeset
424
776573e592da create media refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1777
diff changeset
425
776573e592da create media refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1777
diff changeset
426 class ArchiveWriterVisitor : public IArchiveVisitor
776573e592da create media refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1777
diff changeset
427 {
776573e592da create media refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1777
diff changeset
428 private:
776573e592da create media refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1777
diff changeset
429 HierarchicalZipWriter& writer_;
776573e592da create media refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1777
diff changeset
430 ServerContext& context_;
776573e592da create media refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1777
diff changeset
431 char instanceFormat_[24];
776573e592da create media refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1777
diff changeset
432 unsigned int countInstances_;
776573e592da create media refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1777
diff changeset
433
776573e592da create media refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1777
diff changeset
434 static std::string GetTag(const DicomMap& tags,
776573e592da create media refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1777
diff changeset
435 const DicomTag& tag)
776573e592da create media refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1777
diff changeset
436 {
776573e592da create media refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1777
diff changeset
437 const DicomValue* v = tags.TestAndGetValue(tag);
776573e592da create media refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1777
diff changeset
438 if (v != NULL &&
776573e592da create media refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1777
diff changeset
439 !v->IsBinary() &&
776573e592da create media refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1777
diff changeset
440 !v->IsNull())
776573e592da create media refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1777
diff changeset
441 {
776573e592da create media refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1777
diff changeset
442 return v->GetContent();
776573e592da create media refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1777
diff changeset
443 }
776573e592da create media refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1777
diff changeset
444 else
776573e592da create media refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1777
diff changeset
445 {
776573e592da create media refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1777
diff changeset
446 return "";
776573e592da create media refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1777
diff changeset
447 }
776573e592da create media refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1777
diff changeset
448 }
776573e592da create media refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1777
diff changeset
449
776573e592da create media refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1777
diff changeset
450 public:
776573e592da create media refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1777
diff changeset
451 ArchiveWriterVisitor(HierarchicalZipWriter& writer,
776573e592da create media refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1777
diff changeset
452 ServerContext& context) :
776573e592da create media refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1777
diff changeset
453 writer_(writer),
1847
559956d5ceb2 cppcheck
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1778
diff changeset
454 context_(context),
559956d5ceb2 cppcheck
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1778
diff changeset
455 countInstances_(0)
1778
776573e592da create media refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1777
diff changeset
456 {
1847
559956d5ceb2 cppcheck
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1778
diff changeset
457 snprintf(instanceFormat_, sizeof(instanceFormat_) - 1, "%%08d.dcm");
1778
776573e592da create media refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1777
diff changeset
458 }
776573e592da create media refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1777
diff changeset
459
776573e592da create media refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1777
diff changeset
460 virtual void Open(ResourceType level,
776573e592da create media refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1777
diff changeset
461 const std::string& publicId)
776573e592da create media refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1777
diff changeset
462 {
776573e592da create media refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1777
diff changeset
463 std::string path;
776573e592da create media refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1777
diff changeset
464
776573e592da create media refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1777
diff changeset
465 DicomMap tags;
776573e592da create media refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1777
diff changeset
466 if (context_.GetIndex().GetMainDicomTags(tags, publicId, level, level))
776573e592da create media refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1777
diff changeset
467 {
776573e592da create media refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1777
diff changeset
468 switch (level)
776573e592da create media refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1777
diff changeset
469 {
776573e592da create media refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1777
diff changeset
470 case ResourceType_Patient:
776573e592da create media refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1777
diff changeset
471 path = GetTag(tags, DICOM_TAG_PATIENT_ID) + " " + GetTag(tags, DICOM_TAG_PATIENT_NAME);
776573e592da create media refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1777
diff changeset
472 break;
776573e592da create media refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1777
diff changeset
473
776573e592da create media refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1777
diff changeset
474 case ResourceType_Study:
776573e592da create media refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1777
diff changeset
475 path = GetTag(tags, DICOM_TAG_ACCESSION_NUMBER) + " " + GetTag(tags, DICOM_TAG_STUDY_DESCRIPTION);
776573e592da create media refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1777
diff changeset
476 break;
776573e592da create media refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1777
diff changeset
477
776573e592da create media refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1777
diff changeset
478 case ResourceType_Series:
776573e592da create media refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1777
diff changeset
479 {
776573e592da create media refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1777
diff changeset
480 std::string modality = GetTag(tags, DICOM_TAG_MODALITY);
776573e592da create media refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1777
diff changeset
481 path = modality + " " + GetTag(tags, DICOM_TAG_SERIES_DESCRIPTION);
776573e592da create media refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1777
diff changeset
482
776573e592da create media refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1777
diff changeset
483 if (modality.size() == 0)
776573e592da create media refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1777
diff changeset
484 {
776573e592da create media refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1777
diff changeset
485 snprintf(instanceFormat_, sizeof(instanceFormat_) - 1, "%%08d.dcm");
776573e592da create media refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1777
diff changeset
486 }
776573e592da create media refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1777
diff changeset
487 else if (modality.size() == 1)
776573e592da create media refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1777
diff changeset
488 {
776573e592da create media refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1777
diff changeset
489 snprintf(instanceFormat_, sizeof(instanceFormat_) - 1, "%c%%07d.dcm",
776573e592da create media refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1777
diff changeset
490 toupper(modality[0]));
776573e592da create media refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1777
diff changeset
491 }
776573e592da create media refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1777
diff changeset
492 else if (modality.size() >= 2)
776573e592da create media refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1777
diff changeset
493 {
776573e592da create media refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1777
diff changeset
494 snprintf(instanceFormat_, sizeof(instanceFormat_) - 1, "%c%c%%06d.dcm",
776573e592da create media refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1777
diff changeset
495 toupper(modality[0]), toupper(modality[1]));
776573e592da create media refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1777
diff changeset
496 }
776573e592da create media refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1777
diff changeset
497
776573e592da create media refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1777
diff changeset
498 countInstances_ = 0;
776573e592da create media refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1777
diff changeset
499
776573e592da create media refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1777
diff changeset
500 break;
776573e592da create media refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1777
diff changeset
501 }
776573e592da create media refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1777
diff changeset
502
776573e592da create media refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1777
diff changeset
503 default:
776573e592da create media refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1777
diff changeset
504 throw OrthancException(ErrorCode_InternalError);
776573e592da create media refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1777
diff changeset
505 }
776573e592da create media refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1777
diff changeset
506 }
776573e592da create media refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1777
diff changeset
507
776573e592da create media refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1777
diff changeset
508 path = Toolbox::StripSpaces(Toolbox::ConvertToAscii(path));
776573e592da create media refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1777
diff changeset
509
776573e592da create media refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1777
diff changeset
510 if (path.empty())
776573e592da create media refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1777
diff changeset
511 {
776573e592da create media refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1777
diff changeset
512 path = std::string("Unknown ") + EnumerationToString(level);
776573e592da create media refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1777
diff changeset
513 }
776573e592da create media refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1777
diff changeset
514
776573e592da create media refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1777
diff changeset
515 writer_.OpenDirectory(path.c_str());
776573e592da create media refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1777
diff changeset
516 }
776573e592da create media refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1777
diff changeset
517
776573e592da create media refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1777
diff changeset
518 virtual void Close()
776573e592da create media refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1777
diff changeset
519 {
776573e592da create media refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1777
diff changeset
520 writer_.CloseDirectory();
776573e592da create media refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1777
diff changeset
521 }
776573e592da create media refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1777
diff changeset
522
776573e592da create media refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1777
diff changeset
523 virtual void AddInstance(const std::string& instanceId,
776573e592da create media refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1777
diff changeset
524 const FileInfo& dicom)
776573e592da create media refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1777
diff changeset
525 {
776573e592da create media refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1777
diff changeset
526 std::string content;
2128
9329ba17a069 Possibility to DELETE "dicom-as-json" attachments to reconstruct them
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1900
diff changeset
527 context_.ReadAttachment(content, dicom);
1778
776573e592da create media refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1777
diff changeset
528
776573e592da create media refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1777
diff changeset
529 char filename[24];
776573e592da create media refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1777
diff changeset
530 snprintf(filename, sizeof(filename) - 1, instanceFormat_, countInstances_);
776573e592da create media refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1777
diff changeset
531 countInstances_ ++;
776573e592da create media refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1777
diff changeset
532
776573e592da create media refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1777
diff changeset
533 writer_.OpenFile(filename);
776573e592da create media refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1777
diff changeset
534 writer_.Write(content);
776573e592da create media refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1777
diff changeset
535 }
776573e592da create media refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1777
diff changeset
536
776573e592da create media refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1777
diff changeset
537 static void Apply(RestApiOutput& output,
776573e592da create media refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1777
diff changeset
538 ServerContext& context,
776573e592da create media refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1777
diff changeset
539 ArchiveIndex& archive,
776573e592da create media refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1777
diff changeset
540 const std::string& filename)
776573e592da create media refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1777
diff changeset
541 {
776573e592da create media refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1777
diff changeset
542 archive.Expand(context.GetIndex());
776573e592da create media refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1777
diff changeset
543
776573e592da create media refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1777
diff changeset
544 StatisticsVisitor stats;
776573e592da create media refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1777
diff changeset
545 archive.Apply(stats);
776573e592da create media refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1777
diff changeset
546
776573e592da create media refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1777
diff changeset
547 const bool isZip64 = IsZip64Required(stats.GetUncompressedSize(), stats.GetInstancesCount());
776573e592da create media refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1777
diff changeset
548
776573e592da create media refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1777
diff changeset
549 // Create a RAII for the temporary file to manage the ZIP file
2140
aa4b8895cd23 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2128
diff changeset
550 TemporaryFile tmp;
1778
776573e592da create media refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1777
diff changeset
551
776573e592da create media refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1777
diff changeset
552 {
776573e592da create media refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1777
diff changeset
553 // Create a ZIP writer
776573e592da create media refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1777
diff changeset
554 HierarchicalZipWriter writer(tmp.GetPath().c_str());
776573e592da create media refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1777
diff changeset
555 writer.SetZip64(isZip64);
776573e592da create media refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1777
diff changeset
556
776573e592da create media refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1777
diff changeset
557 ArchiveWriterVisitor v(writer, context);
776573e592da create media refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1777
diff changeset
558 archive.Apply(v);
776573e592da create media refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1777
diff changeset
559 }
776573e592da create media refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1777
diff changeset
560
776573e592da create media refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1777
diff changeset
561 // Prepare the sending of the ZIP file
776573e592da create media refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1777
diff changeset
562 FilesystemHttpSender sender(tmp.GetPath());
776573e592da create media refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1777
diff changeset
563 sender.SetContentType("application/zip");
776573e592da create media refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1777
diff changeset
564 sender.SetContentFilename(filename);
776573e592da create media refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1777
diff changeset
565
776573e592da create media refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1777
diff changeset
566 // Send the ZIP
776573e592da create media refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1777
diff changeset
567 output.AnswerStream(sender);
776573e592da create media refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1777
diff changeset
568
776573e592da create media refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1777
diff changeset
569 // The temporary file is automatically removed thanks to the RAII
776573e592da create media refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1777
diff changeset
570 }
776573e592da create media refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1777
diff changeset
571 };
776573e592da create media refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1777
diff changeset
572
776573e592da create media refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1777
diff changeset
573
776573e592da create media refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1777
diff changeset
574 class MediaWriterVisitor : public IArchiveVisitor
776573e592da create media refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1777
diff changeset
575 {
776573e592da create media refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1777
diff changeset
576 private:
776573e592da create media refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1777
diff changeset
577 HierarchicalZipWriter& writer_;
776573e592da create media refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1777
diff changeset
578 DicomDirWriter dicomDir_;
776573e592da create media refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1777
diff changeset
579 ServerContext& context_;
776573e592da create media refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1777
diff changeset
580 unsigned int countInstances_;
776573e592da create media refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1777
diff changeset
581
776573e592da create media refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1777
diff changeset
582 public:
776573e592da create media refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1777
diff changeset
583 MediaWriterVisitor(HierarchicalZipWriter& writer,
776573e592da create media refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1777
diff changeset
584 ServerContext& context) :
776573e592da create media refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1777
diff changeset
585 writer_(writer),
776573e592da create media refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1777
diff changeset
586 context_(context),
776573e592da create media refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1777
diff changeset
587 countInstances_(0)
776573e592da create media refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1777
diff changeset
588 {
776573e592da create media refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1777
diff changeset
589 }
776573e592da create media refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1777
diff changeset
590
776573e592da create media refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1777
diff changeset
591 void EncodeDicomDir(std::string& result)
776573e592da create media refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1777
diff changeset
592 {
776573e592da create media refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1777
diff changeset
593 dicomDir_.Encode(result);
776573e592da create media refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1777
diff changeset
594 }
776573e592da create media refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1777
diff changeset
595
776573e592da create media refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1777
diff changeset
596 virtual void Open(ResourceType level,
776573e592da create media refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1777
diff changeset
597 const std::string& publicId)
776573e592da create media refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1777
diff changeset
598 {
776573e592da create media refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1777
diff changeset
599 }
776573e592da create media refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1777
diff changeset
600
776573e592da create media refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1777
diff changeset
601 virtual void Close()
776573e592da create media refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1777
diff changeset
602 {
776573e592da create media refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1777
diff changeset
603 }
776573e592da create media refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1777
diff changeset
604
776573e592da create media refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1777
diff changeset
605 virtual void AddInstance(const std::string& instanceId,
776573e592da create media refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1777
diff changeset
606 const FileInfo& dicom)
776573e592da create media refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1777
diff changeset
607 {
776573e592da create media refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1777
diff changeset
608 // "DICOM restricts the filenames on DICOM media to 8
776573e592da create media refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1777
diff changeset
609 // characters (some systems wrongly use 8.3, but this does not
776573e592da create media refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1777
diff changeset
610 // conform to the standard)."
776573e592da create media refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1777
diff changeset
611 std::string filename = "IM" + boost::lexical_cast<std::string>(countInstances_);
776573e592da create media refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1777
diff changeset
612 writer_.OpenFile(filename.c_str());
776573e592da create media refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1777
diff changeset
613
776573e592da create media refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1777
diff changeset
614 std::string content;
2128
9329ba17a069 Possibility to DELETE "dicom-as-json" attachments to reconstruct them
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1900
diff changeset
615 context_.ReadAttachment(content, dicom);
1778
776573e592da create media refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1777
diff changeset
616 writer_.Write(content);
776573e592da create media refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1777
diff changeset
617
776573e592da create media refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1777
diff changeset
618 ParsedDicomFile parsed(content);
776573e592da create media refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1777
diff changeset
619 dicomDir_.Add("IMAGES", filename, parsed);
776573e592da create media refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1777
diff changeset
620
776573e592da create media refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1777
diff changeset
621 countInstances_ ++;
776573e592da create media refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1777
diff changeset
622 }
776573e592da create media refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1777
diff changeset
623
776573e592da create media refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1777
diff changeset
624 static void Apply(RestApiOutput& output,
776573e592da create media refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1777
diff changeset
625 ServerContext& context,
776573e592da create media refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1777
diff changeset
626 ArchiveIndex& archive,
776573e592da create media refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1777
diff changeset
627 const std::string& filename)
776573e592da create media refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1777
diff changeset
628 {
776573e592da create media refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1777
diff changeset
629 archive.Expand(context.GetIndex());
776573e592da create media refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1777
diff changeset
630
776573e592da create media refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1777
diff changeset
631 StatisticsVisitor stats;
776573e592da create media refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1777
diff changeset
632 archive.Apply(stats);
776573e592da create media refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1777
diff changeset
633
776573e592da create media refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1777
diff changeset
634 const bool isZip64 = IsZip64Required(stats.GetUncompressedSize(), stats.GetInstancesCount());
776573e592da create media refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1777
diff changeset
635
776573e592da create media refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1777
diff changeset
636 // Create a RAII for the temporary file to manage the ZIP file
2140
aa4b8895cd23 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2128
diff changeset
637 TemporaryFile tmp;
1778
776573e592da create media refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1777
diff changeset
638
776573e592da create media refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1777
diff changeset
639 {
776573e592da create media refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1777
diff changeset
640 // Create a ZIP writer
776573e592da create media refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1777
diff changeset
641 HierarchicalZipWriter writer(tmp.GetPath().c_str());
776573e592da create media refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1777
diff changeset
642 writer.SetZip64(isZip64);
776573e592da create media refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1777
diff changeset
643 writer.OpenDirectory("IMAGES");
776573e592da create media refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1777
diff changeset
644
776573e592da create media refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1777
diff changeset
645 // Create the DICOMDIR writer
776573e592da create media refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1777
diff changeset
646 DicomDirWriter dicomDir;
776573e592da create media refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1777
diff changeset
647
776573e592da create media refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1777
diff changeset
648 MediaWriterVisitor v(writer, context);
776573e592da create media refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1777
diff changeset
649 archive.Apply(v);
776573e592da create media refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1777
diff changeset
650
776573e592da create media refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1777
diff changeset
651 // Add the DICOMDIR
776573e592da create media refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1777
diff changeset
652 writer.CloseDirectory();
776573e592da create media refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1777
diff changeset
653 writer.OpenFile("DICOMDIR");
776573e592da create media refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1777
diff changeset
654 std::string s;
776573e592da create media refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1777
diff changeset
655 v.EncodeDicomDir(s);
776573e592da create media refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1777
diff changeset
656 writer.Write(s);
776573e592da create media refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1777
diff changeset
657 }
776573e592da create media refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1777
diff changeset
658
776573e592da create media refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1777
diff changeset
659 // Prepare the sending of the ZIP file
776573e592da create media refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1777
diff changeset
660 FilesystemHttpSender sender(tmp.GetPath());
776573e592da create media refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1777
diff changeset
661 sender.SetContentType("application/zip");
776573e592da create media refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1777
diff changeset
662 sender.SetContentFilename(filename);
776573e592da create media refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1777
diff changeset
663
776573e592da create media refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1777
diff changeset
664 // Send the ZIP
776573e592da create media refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1777
diff changeset
665 output.AnswerStream(sender);
776573e592da create media refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1777
diff changeset
666
776573e592da create media refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1777
diff changeset
667 // The temporary file is automatically removed thanks to the RAII
776573e592da create media refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1777
diff changeset
668 }
776573e592da create media refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1777
diff changeset
669 };
1774
784a6b92d2f1 start of refactoring the creation of archives
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1623
diff changeset
670 }
784a6b92d2f1 start of refactoring the creation of archives
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1623
diff changeset
671
784a6b92d2f1 start of refactoring the creation of archives
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1623
diff changeset
672
1778
776573e592da create media refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1777
diff changeset
673 static bool AddResourcesOfInterest(ArchiveIndex& archive,
776573e592da create media refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1777
diff changeset
674 RestApiPostCall& call)
1774
784a6b92d2f1 start of refactoring the creation of archives
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1623
diff changeset
675 {
784a6b92d2f1 start of refactoring the creation of archives
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1623
diff changeset
676 ServerIndex& index = OrthancRestApi::GetIndex(call);
784a6b92d2f1 start of refactoring the creation of archives
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1623
diff changeset
677
784a6b92d2f1 start of refactoring the creation of archives
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1623
diff changeset
678 Json::Value resources;
784a6b92d2f1 start of refactoring the creation of archives
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1623
diff changeset
679 if (call.ParseJsonRequest(resources) &&
784a6b92d2f1 start of refactoring the creation of archives
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1623
diff changeset
680 resources.type() == Json::arrayValue)
784a6b92d2f1 start of refactoring the creation of archives
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1623
diff changeset
681 {
784a6b92d2f1 start of refactoring the creation of archives
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1623
diff changeset
682 for (Json::Value::ArrayIndex i = 0; i < resources.size(); i++)
784a6b92d2f1 start of refactoring the creation of archives
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1623
diff changeset
683 {
784a6b92d2f1 start of refactoring the creation of archives
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1623
diff changeset
684 if (resources[i].type() != Json::stringValue)
784a6b92d2f1 start of refactoring the creation of archives
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1623
diff changeset
685 {
1778
776573e592da create media refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1777
diff changeset
686 return false; // Bad request
1774
784a6b92d2f1 start of refactoring the creation of archives
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1623
diff changeset
687 }
784a6b92d2f1 start of refactoring the creation of archives
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1623
diff changeset
688
1776
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1775
diff changeset
689 ResourceIdentifiers resource(index, resources[i].asString());
1777
0f5c416969dc more memory-efficient ArchiveIndex
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1776
diff changeset
690 archive.Add(index, resource);
1774
784a6b92d2f1 start of refactoring the creation of archives
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1623
diff changeset
691 }
784a6b92d2f1 start of refactoring the creation of archives
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1623
diff changeset
692
1778
776573e592da create media refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1777
diff changeset
693 return true;
776573e592da create media refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1777
diff changeset
694 }
776573e592da create media refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1777
diff changeset
695 else
776573e592da create media refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1777
diff changeset
696 {
776573e592da create media refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1777
diff changeset
697 return false;
776573e592da create media refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1777
diff changeset
698 }
776573e592da create media refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1777
diff changeset
699 }
1774
784a6b92d2f1 start of refactoring the creation of archives
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1623
diff changeset
700
1778
776573e592da create media refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1777
diff changeset
701
776573e592da create media refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1777
diff changeset
702 static void CreateBatchArchive(RestApiPostCall& call)
776573e592da create media refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1777
diff changeset
703 {
776573e592da create media refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1777
diff changeset
704 ArchiveIndex archive(ResourceType_Patient); // root
1774
784a6b92d2f1 start of refactoring the creation of archives
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1623
diff changeset
705
1778
776573e592da create media refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1777
diff changeset
706 if (AddResourcesOfInterest(archive, call))
776573e592da create media refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1777
diff changeset
707 {
776573e592da create media refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1777
diff changeset
708 ArchiveWriterVisitor::Apply(call.GetOutput(),
776573e592da create media refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1777
diff changeset
709 OrthancRestApi::GetContext(call),
776573e592da create media refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1777
diff changeset
710 archive,
776573e592da create media refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1777
diff changeset
711 "Archive.zip");
776573e592da create media refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1777
diff changeset
712 }
776573e592da create media refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1777
diff changeset
713 }
776573e592da create media refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1777
diff changeset
714
1774
784a6b92d2f1 start of refactoring the creation of archives
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1623
diff changeset
715
1778
776573e592da create media refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1777
diff changeset
716 static void CreateBatchMedia(RestApiPostCall& call)
776573e592da create media refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1777
diff changeset
717 {
776573e592da create media refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1777
diff changeset
718 ArchiveIndex archive(ResourceType_Patient); // root
776573e592da create media refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1777
diff changeset
719
776573e592da create media refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1777
diff changeset
720 if (AddResourcesOfInterest(archive, call))
776573e592da create media refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1777
diff changeset
721 {
776573e592da create media refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1777
diff changeset
722 MediaWriterVisitor::Apply(call.GetOutput(),
776573e592da create media refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1777
diff changeset
723 OrthancRestApi::GetContext(call),
776573e592da create media refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1777
diff changeset
724 archive,
776573e592da create media refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1777
diff changeset
725 "Archive.zip");
1774
784a6b92d2f1 start of refactoring the creation of archives
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1623
diff changeset
726 }
784a6b92d2f1 start of refactoring the creation of archives
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1623
diff changeset
727 }
784a6b92d2f1 start of refactoring the creation of archives
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1623
diff changeset
728
784a6b92d2f1 start of refactoring the creation of archives
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1623
diff changeset
729
1778
776573e592da create media refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1777
diff changeset
730 static void CreateArchive(RestApiGetCall& call)
776573e592da create media refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1777
diff changeset
731 {
776573e592da create media refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1777
diff changeset
732 ServerIndex& index = OrthancRestApi::GetIndex(call);
776573e592da create media refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1777
diff changeset
733
776573e592da create media refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1777
diff changeset
734 std::string id = call.GetUriComponent("id", "");
776573e592da create media refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1777
diff changeset
735 ResourceIdentifiers resource(index, id);
776573e592da create media refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1777
diff changeset
736
776573e592da create media refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1777
diff changeset
737 ArchiveIndex archive(ResourceType_Patient); // root
776573e592da create media refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1777
diff changeset
738 archive.Add(OrthancRestApi::GetIndex(call), resource);
776573e592da create media refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1777
diff changeset
739
776573e592da create media refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1777
diff changeset
740 ArchiveWriterVisitor::Apply(call.GetOutput(),
776573e592da create media refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1777
diff changeset
741 OrthancRestApi::GetContext(call),
776573e592da create media refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1777
diff changeset
742 archive,
776573e592da create media refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1777
diff changeset
743 id + ".zip");
776573e592da create media refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1777
diff changeset
744 }
776573e592da create media refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1777
diff changeset
745
776573e592da create media refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1777
diff changeset
746
776573e592da create media refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1777
diff changeset
747 static void CreateMedia(RestApiGetCall& call)
776573e592da create media refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1777
diff changeset
748 {
776573e592da create media refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1777
diff changeset
749 ServerIndex& index = OrthancRestApi::GetIndex(call);
776573e592da create media refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1777
diff changeset
750
776573e592da create media refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1777
diff changeset
751 std::string id = call.GetUriComponent("id", "");
776573e592da create media refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1777
diff changeset
752 ResourceIdentifiers resource(index, id);
776573e592da create media refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1777
diff changeset
753
776573e592da create media refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1777
diff changeset
754 ArchiveIndex archive(ResourceType_Patient); // root
776573e592da create media refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1777
diff changeset
755 archive.Add(OrthancRestApi::GetIndex(call), resource);
776573e592da create media refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1777
diff changeset
756
776573e592da create media refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1777
diff changeset
757 MediaWriterVisitor::Apply(call.GetOutput(),
776573e592da create media refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1777
diff changeset
758 OrthancRestApi::GetContext(call),
776573e592da create media refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1777
diff changeset
759 archive,
776573e592da create media refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1777
diff changeset
760 id + ".zip");
776573e592da create media refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1777
diff changeset
761 }
776573e592da create media refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1777
diff changeset
762
1774
784a6b92d2f1 start of refactoring the creation of archives
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1623
diff changeset
763
751
5197fd35333c refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
764 void OrthancRestApi::RegisterArchive()
5197fd35333c refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
765 {
1778
776573e592da create media refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1777
diff changeset
766 Register("/patients/{id}/archive", CreateArchive);
776573e592da create media refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1777
diff changeset
767 Register("/studies/{id}/archive", CreateArchive);
776573e592da create media refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1777
diff changeset
768 Register("/series/{id}/archive", CreateArchive);
1121
82567bac5e25 Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 976
diff changeset
769
1778
776573e592da create media refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1777
diff changeset
770 Register("/patients/{id}/media", CreateMedia);
776573e592da create media refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1777
diff changeset
771 Register("/studies/{id}/media", CreateMedia);
776573e592da create media refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1777
diff changeset
772 Register("/series/{id}/media", CreateMedia);
1774
784a6b92d2f1 start of refactoring the creation of archives
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1623
diff changeset
773
1778
776573e592da create media refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1777
diff changeset
774 Register("/tools/create-archive", CreateBatchArchive);
776573e592da create media refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1777
diff changeset
775 Register("/tools/create-media", CreateBatchMedia);
751
5197fd35333c refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
776 }
5197fd35333c refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
777 }