Mercurial > hg > orthanc
annotate OrthancServer/ServerIndex.cpp @ 2997:5a6a2c5bf73f
fix basic plugin sample
author | Sebastien Jodogne <s.jodogne@gmail.com> |
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date | Mon, 10 Dec 2018 21:52:01 +0100 |
parents | 96089d1aba4d |
children | 0e1755e5efd0 |
rev | line source |
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0 | 1 /** |
62 | 2 * Orthanc - A Lightweight, RESTful DICOM Store |
1900 | 3 * Copyright (C) 2012-2016 Sebastien Jodogne, Medical Physics |
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4 * Department, University Hospital of Liege, Belgium |
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5 * Copyright (C) 2017-2018 Osimis S.A., Belgium |
0 | 6 * |
7 * This program is free software: you can redistribute it and/or | |
8 * modify it under the terms of the GNU General Public License as | |
9 * published by the Free Software Foundation, either version 3 of the | |
10 * License, or (at your option) any later version. | |
136 | 11 * |
12 * In addition, as a special exception, the copyright holders of this | |
13 * program give permission to link the code of its release with the | |
14 * OpenSSL project's "OpenSSL" library (or with modified versions of it | |
15 * that use the same license as the "OpenSSL" library), and distribute | |
16 * the linked executables. You must obey the GNU General Public License | |
17 * in all respects for all of the code used other than "OpenSSL". If you | |
18 * modify file(s) with this exception, you may extend this exception to | |
19 * your version of the file(s), but you are not obligated to do so. If | |
20 * you do not wish to do so, delete this exception statement from your | |
21 * version. If you delete this exception statement from all source files | |
22 * in the program, then also delete it here. | |
0 | 23 * |
24 * This program is distributed in the hope that it will be useful, but | |
25 * WITHOUT ANY WARRANTY; without even the implied warranty of | |
26 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU | |
27 * General Public License for more details. | |
28 * | |
29 * You should have received a copy of the GNU General Public License | |
30 * along with this program. If not, see <http://www.gnu.org/licenses/>. | |
31 **/ | |
32 | |
33 | |
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34 #include "PrecompiledHeadersServer.h" |
0 | 35 #include "ServerIndex.h" |
36 | |
6 | 37 #ifndef NOMINMAX |
2 | 38 #define NOMINMAX |
6 | 39 #endif |
40 | |
1198 | 41 #include "ServerIndexChange.h" |
8 | 42 #include "EmbeddedResources.h" |
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43 #include "OrthancConfiguration.h" |
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44 #include "../Core/DicomParsing/ParsedDicomFile.h" |
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45 #include "ServerToolbox.h" |
0 | 46 #include "../Core/Toolbox.h" |
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47 #include "../Core/Logging.h" |
0 | 48 #include "../Core/DicomFormat/DicomArray.h" |
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49 |
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50 #include "../Core/DicomParsing/FromDcmtkBridge.h" |
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51 #include "ServerContext.h" |
1822 | 52 #include "DicomInstanceToStore.h" |
2122 | 53 #include "Search/LookupResource.h" |
0 | 54 |
55 #include <boost/lexical_cast.hpp> | |
56 #include <stdio.h> | |
57 | |
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58 static const uint64_t MEGA_BYTES = 1024 * 1024; |
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59 |
62 | 60 namespace Orthanc |
0 | 61 { |
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62 class ServerIndex::Listener : public IDatabaseListener |
0 | 63 { |
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64 private: |
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65 struct FileToRemove |
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66 { |
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67 private: |
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68 std::string uuid_; |
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69 FileContentType type_; |
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70 |
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71 public: |
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72 FileToRemove(const FileInfo& info) : uuid_(info.GetUuid()), |
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73 type_(info.GetContentType()) |
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74 { |
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75 } |
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76 |
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77 const std::string& GetUuid() const |
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78 { |
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79 return uuid_; |
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80 } |
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81 |
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82 FileContentType GetContentType() const |
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83 { |
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84 return type_; |
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85 } |
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86 }; |
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87 |
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88 ServerContext& context_; |
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89 bool hasRemainingLevel_; |
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90 ResourceType remainingType_; |
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91 std::string remainingPublicId_; |
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92 std::list<FileToRemove> pendingFilesToRemove_; |
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93 std::list<ServerIndexChange> pendingChanges_; |
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94 uint64_t sizeOfFilesToRemove_; |
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95 bool insideTransaction_; |
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96 |
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97 void Reset() |
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98 { |
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99 sizeOfFilesToRemove_ = 0; |
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100 hasRemainingLevel_ = false; |
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101 pendingFilesToRemove_.clear(); |
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102 pendingChanges_.clear(); |
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103 } |
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104 |
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105 public: |
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106 Listener(ServerContext& context) : context_(context), |
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107 insideTransaction_(false) |
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108 { |
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109 Reset(); |
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110 assert(ResourceType_Patient < ResourceType_Study && |
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111 ResourceType_Study < ResourceType_Series && |
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112 ResourceType_Series < ResourceType_Instance); |
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113 } |
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114 |
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115 void StartTransaction() |
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116 { |
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117 Reset(); |
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118 insideTransaction_ = true; |
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119 } |
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120 |
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121 void EndTransaction() |
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122 { |
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123 insideTransaction_ = false; |
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124 } |
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125 |
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126 uint64_t GetSizeOfFilesToRemove() |
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127 { |
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128 return sizeOfFilesToRemove_; |
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129 } |
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130 |
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131 void CommitFilesToRemove() |
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132 { |
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133 for (std::list<FileToRemove>::const_iterator |
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134 it = pendingFilesToRemove_.begin(); |
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135 it != pendingFilesToRemove_.end(); ++it) |
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136 { |
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137 context_.RemoveFile(it->GetUuid(), it->GetContentType()); |
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138 } |
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139 } |
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140 |
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141 void CommitChanges() |
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142 { |
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143 for (std::list<ServerIndexChange>::const_iterator |
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144 it = pendingChanges_.begin(); |
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145 it != pendingChanges_.end(); ++it) |
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146 { |
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147 context_.SignalChange(*it); |
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148 } |
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149 } |
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150 |
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151 virtual void SignalRemainingAncestor(ResourceType parentType, |
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152 const std::string& publicId) |
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153 { |
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154 VLOG(1) << "Remaining ancestor \"" << publicId << "\" (" << parentType << ")"; |
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155 |
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156 if (hasRemainingLevel_) |
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157 { |
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158 if (parentType < remainingType_) |
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159 { |
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160 remainingType_ = parentType; |
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161 remainingPublicId_ = publicId; |
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162 } |
1158 | 163 } |
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164 else |
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165 { |
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166 hasRemainingLevel_ = true; |
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167 remainingType_ = parentType; |
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168 remainingPublicId_ = publicId; |
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169 } |
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170 } |
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171 |
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172 virtual void SignalFileDeleted(const FileInfo& info) |
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173 { |
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174 assert(Toolbox::IsUuid(info.GetUuid())); |
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175 pendingFilesToRemove_.push_back(FileToRemove(info)); |
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176 sizeOfFilesToRemove_ += info.GetCompressedSize(); |
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177 } |
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178 |
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179 virtual void SignalChange(const ServerIndexChange& change) |
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180 { |
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181 VLOG(1) << "Change related to resource " << change.GetPublicId() << " of type " |
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182 << EnumerationToString(change.GetResourceType()) << ": " |
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183 << EnumerationToString(change.GetChangeType()); |
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184 |
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185 if (insideTransaction_) |
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186 { |
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187 pendingChanges_.push_back(change); |
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188 } |
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189 else |
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190 { |
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191 context_.SignalChange(change); |
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192 } |
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193 } |
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194 |
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195 bool HasRemainingLevel() const |
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196 { |
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197 return hasRemainingLevel_; |
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198 } |
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199 |
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200 ResourceType GetRemainingType() const |
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201 { |
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202 assert(HasRemainingLevel()); |
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203 return remainingType_; |
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204 } |
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205 |
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206 const std::string& GetRemainingPublicId() const |
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207 { |
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208 assert(HasRemainingLevel()); |
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209 return remainingPublicId_; |
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210 } |
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211 }; |
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213 | |
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214 class ServerIndex::Transaction |
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215 { |
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216 private: |
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217 ServerIndex& index_; |
1235 | 218 std::auto_ptr<SQLite::ITransaction> transaction_; |
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219 bool isCommitted_; |
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220 |
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221 public: |
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222 Transaction(ServerIndex& index) : |
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223 index_(index), |
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224 isCommitted_(false) |
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225 { |
1247 | 226 transaction_.reset(index_.db_.StartTransaction()); |
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227 transaction_->Begin(); |
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228 |
1270 | 229 assert(index_.currentStorageSize_ == index_.db_.GetTotalCompressedSize()); |
230 | |
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231 index_.listener_->StartTransaction(); |
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232 } |
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233 |
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234 ~Transaction() |
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235 { |
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236 index_.listener_->EndTransaction(); |
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237 |
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238 if (!isCommitted_) |
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239 { |
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240 transaction_->Rollback(); |
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241 } |
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242 } |
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243 |
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244 void Commit(uint64_t sizeOfAddedFiles) |
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245 { |
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246 if (!isCommitted_) |
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247 { |
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248 transaction_->Commit(); |
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249 |
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250 // We can remove the files once the SQLite transaction has |
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251 // been successfully committed. Some files might have to be |
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252 // deleted because of recycling. |
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253 index_.listener_->CommitFilesToRemove(); |
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254 |
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255 index_.currentStorageSize_ += sizeOfAddedFiles; |
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256 |
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257 assert(index_.currentStorageSize_ >= index_.listener_->GetSizeOfFilesToRemove()); |
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258 index_.currentStorageSize_ -= index_.listener_->GetSizeOfFilesToRemove(); |
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259 |
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260 // Send all the pending changes to the Orthanc plugins |
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261 index_.listener_->CommitChanges(); |
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262 |
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263 isCommitted_ = true; |
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264 } |
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265 } |
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266 }; |
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267 |
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268 |
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269 class ServerIndex::UnstableResourcePayload |
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270 { |
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271 private: |
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272 ResourceType type_; |
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273 std::string publicId_; |
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274 boost::posix_time::ptime time_; |
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275 |
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276 public: |
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277 UnstableResourcePayload() : type_(ResourceType_Instance) |
511
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278 { |
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279 } |
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280 |
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281 UnstableResourcePayload(Orthanc::ResourceType type, |
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282 const std::string& publicId) : |
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283 type_(type), |
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284 publicId_(publicId) |
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285 { |
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286 time_ = boost::posix_time::second_clock::local_time(); |
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287 } |
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288 |
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289 unsigned int GetAge() const |
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290 { |
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291 return (boost::posix_time::second_clock::local_time() - time_).total_seconds(); |
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292 } |
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293 |
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294 ResourceType GetResourceType() const |
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295 { |
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296 return type_; |
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297 } |
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298 |
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299 const std::string& GetPublicId() const |
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300 { |
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301 return publicId_; |
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302 } |
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303 }; |
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304 |
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305 |
212 | 306 bool ServerIndex::DeleteResource(Json::Value& target, |
0 | 307 const std::string& uuid, |
202 | 308 ResourceType expectedType) |
0 | 309 { |
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310 boost::mutex::scoped_lock lock(mutex_); |
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311 |
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312 Transaction t(*this); |
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313 |
202 | 314 int64_t id; |
315 ResourceType type; | |
1294 | 316 if (!db_.LookupResource(id, type, uuid) || |
202 | 317 expectedType != type) |
0 | 318 { |
319 return false; | |
320 } | |
202 | 321 |
1247 | 322 db_.DeleteResource(id); |
0 | 323 |
202 | 324 if (listener_->HasRemainingLevel()) |
0 | 325 { |
202 | 326 ResourceType type = listener_->GetRemainingType(); |
327 const std::string& uuid = listener_->GetRemainingPublicId(); | |
0 | 328 |
329 target["RemainingAncestor"] = Json::Value(Json::objectValue); | |
204 | 330 target["RemainingAncestor"]["Path"] = GetBasePath(type, uuid); |
434
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331 target["RemainingAncestor"]["Type"] = EnumerationToString(type); |
0 | 332 target["RemainingAncestor"]["ID"] = uuid; |
333 } | |
334 else | |
335 { | |
336 target["RemainingAncestor"] = Json::nullValue; | |
337 } | |
338 | |
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339 t.Commit(0); |
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340 |
0 | 341 return true; |
342 } | |
343 | |
344 | |
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345 void ServerIndex::FlushThread(ServerIndex* that, |
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346 unsigned int threadSleep) |
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347 { |
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348 // By default, wait for 10 seconds before flushing |
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349 unsigned int sleep = 10; |
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350 |
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351 try |
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352 { |
744 | 353 boost::mutex::scoped_lock lock(that->mutex_); |
1239 | 354 std::string sleepString; |
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355 |
1247 | 356 if (that->db_.LookupGlobalProperty(sleepString, GlobalProperty_FlushSleep) && |
1239 | 357 Toolbox::IsInteger(sleepString)) |
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358 { |
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359 sleep = boost::lexical_cast<unsigned int>(sleepString); |
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360 } |
511
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361 } |
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362 catch (boost::bad_lexical_cast&) |
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363 { |
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364 } |
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365 |
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366 LOG(INFO) << "Starting the database flushing thread (sleep = " << sleep << ")"; |
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367 |
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368 unsigned int count = 0; |
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369 |
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370 while (!that->done_) |
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371 { |
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372 boost::this_thread::sleep(boost::posix_time::milliseconds(threadSleep)); |
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373 count++; |
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374 if (count < sleep) |
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375 { |
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376 continue; |
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377 } |
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378 |
2217 | 379 Logging::Flush(); |
380 | |
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381 boost::mutex::scoped_lock lock(that->mutex_); |
1247 | 382 that->db_.FlushToDisk(); |
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383 count = 0; |
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384 } |
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385 |
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386 LOG(INFO) << "Stopping the database flushing thread"; |
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387 } |
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388 |
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389 |
1247 | 390 static void ComputeExpectedNumberOfInstances(IDatabaseWrapper& db, |
433 | 391 int64_t series, |
392 const DicomMap& dicomSummary) | |
393 { | |
394 try | |
395 { | |
656 | 396 const DicomValue* value; |
397 const DicomValue* value2; | |
398 | |
433 | 399 if ((value = dicomSummary.TestAndGetValue(DICOM_TAG_IMAGES_IN_ACQUISITION)) != NULL && |
400 (value2 = dicomSummary.TestAndGetValue(DICOM_TAG_NUMBER_OF_TEMPORAL_POSITIONS)) != NULL) | |
401 { | |
402 // Patch for series with temporal positions thanks to Will Ryder | |
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403 int64_t imagesInAcquisition = boost::lexical_cast<int64_t>(value->GetContent()); |
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404 int64_t countTemporalPositions = boost::lexical_cast<int64_t>(value2->GetContent()); |
433 | 405 std::string expected = boost::lexical_cast<std::string>(imagesInAcquisition * countTemporalPositions); |
406 db.SetMetadata(series, MetadataType_Series_ExpectedNumberOfInstances, expected); | |
407 } | |
408 | |
409 else if ((value = dicomSummary.TestAndGetValue(DICOM_TAG_NUMBER_OF_SLICES)) != NULL && | |
410 (value2 = dicomSummary.TestAndGetValue(DICOM_TAG_NUMBER_OF_TIME_SLICES)) != NULL) | |
411 { | |
412 // Support of Cardio-PET images | |
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413 int64_t numberOfSlices = boost::lexical_cast<int64_t>(value->GetContent()); |
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414 int64_t numberOfTimeSlices = boost::lexical_cast<int64_t>(value2->GetContent()); |
433 | 415 std::string expected = boost::lexical_cast<std::string>(numberOfSlices * numberOfTimeSlices); |
416 db.SetMetadata(series, MetadataType_Series_ExpectedNumberOfInstances, expected); | |
417 } | |
418 | |
419 else if ((value = dicomSummary.TestAndGetValue(DICOM_TAG_CARDIAC_NUMBER_OF_IMAGES)) != NULL) | |
420 { | |
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421 db.SetMetadata(series, MetadataType_Series_ExpectedNumberOfInstances, value->GetContent()); |
433 | 422 } |
423 } | |
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424 catch (OrthancException&) |
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425 { |
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426 } |
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427 catch (boost::bad_lexical_cast&) |
433 | 428 { |
429 } | |
430 } | |
431 | |
432 | |
1237 | 433 |
434 | |
1238 | 435 bool ServerIndex::GetMetadataAsInteger(int64_t& result, |
1237 | 436 int64_t id, |
437 MetadataType type) | |
438 { | |
1238 | 439 std::string s; |
1247 | 440 if (!db_.LookupMetadata(s, id, type)) |
1237 | 441 { |
442 return false; | |
443 } | |
444 | |
445 try | |
446 { | |
1238 | 447 result = boost::lexical_cast<int64_t>(s); |
1237 | 448 return true; |
449 } | |
450 catch (boost::bad_lexical_cast&) | |
451 { | |
452 return false; | |
453 } | |
454 } | |
455 | |
456 | |
1297 | 457 void ServerIndex::LogChange(int64_t internalId, |
458 ChangeType changeType, | |
459 ResourceType resourceType, | |
460 const std::string& publicId) | |
461 { | |
462 ServerIndexChange change(changeType, resourceType, publicId); | |
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463 |
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464 if (changeType <= ChangeType_INTERNAL_LastLogged) |
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465 { |
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466 db_.LogChange(internalId, change); |
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467 } |
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468 |
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469 assert(listener_.get() != NULL); |
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470 listener_->SignalChange(change); |
1297 | 471 } |
472 | |
1237 | 473 |
474 uint64_t ServerIndex::IncrementGlobalSequenceInternal(GlobalProperty property) | |
475 { | |
476 std::string oldValue; | |
477 | |
1247 | 478 if (db_.LookupGlobalProperty(oldValue, property)) |
1237 | 479 { |
480 uint64_t oldNumber; | |
481 | |
482 try | |
483 { | |
484 oldNumber = boost::lexical_cast<uint64_t>(oldValue); | |
1247 | 485 db_.SetGlobalProperty(property, boost::lexical_cast<std::string>(oldNumber + 1)); |
1237 | 486 return oldNumber + 1; |
487 } | |
488 catch (boost::bad_lexical_cast&) | |
489 { | |
490 throw OrthancException(ErrorCode_InternalError); | |
491 } | |
492 } | |
493 else | |
494 { | |
495 // Initialize the sequence at "1" | |
1247 | 496 db_.SetGlobalProperty(property, "1"); |
1237 | 497 return 1; |
498 } | |
499 } | |
500 | |
501 | |
502 | |
1299 | 503 int64_t ServerIndex::CreateResource(const std::string& publicId, |
504 ResourceType type) | |
505 { | |
506 int64_t id = db_.CreateResource(publicId, type); | |
507 | |
508 ChangeType changeType; | |
509 switch (type) | |
510 { | |
511 case ResourceType_Patient: | |
512 changeType = ChangeType_NewPatient; | |
513 break; | |
514 | |
515 case ResourceType_Study: | |
516 changeType = ChangeType_NewStudy; | |
517 break; | |
518 | |
519 case ResourceType_Series: | |
520 changeType = ChangeType_NewSeries; | |
521 break; | |
522 | |
523 case ResourceType_Instance: | |
524 changeType = ChangeType_NewInstance; | |
525 break; | |
526 | |
527 default: | |
528 throw OrthancException(ErrorCode_InternalError); | |
529 } | |
530 | |
531 ServerIndexChange change(changeType, type, publicId); | |
532 db_.LogChange(id, change); | |
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533 |
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534 assert(listener_.get() != NULL); |
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535 listener_->SignalChange(change); |
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536 |
1299 | 537 return id; |
538 } | |
539 | |
1286 | 540 |
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541 ServerIndex::ServerIndex(ServerContext& context, |
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542 IDatabaseWrapper& db, |
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543 unsigned int threadSleep) : |
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544 done_(false), |
1247 | 545 db_(db), |
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546 maximumStorageSize_(0), |
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547 maximumPatients_(0), |
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548 overwrite_(false) |
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549 { |
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550 listener_.reset(new Listener(context)); |
1247 | 551 db_.SetListener(*listener_); |
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552 |
1247 | 553 currentStorageSize_ = db_.GetTotalCompressedSize(); |
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554 |
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555 // Initial recycling if the parameters have changed since the last |
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556 // execution of Orthanc |
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557 StandaloneRecycling(); |
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558 |
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559 if (db.HasFlushToDisk()) |
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560 { |
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561 flushThread_ = boost::thread(FlushThread, this, threadSleep); |
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562 } |
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563 |
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564 unstableResourcesMonitorThread_ = boost::thread |
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565 (UnstableResourcesMonitorThread, this, threadSleep); |
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566 } |
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567 |
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568 |
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569 |
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570 ServerIndex::~ServerIndex() |
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571 { |
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572 if (!done_) |
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573 { |
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574 LOG(ERROR) << "INTERNAL ERROR: ServerIndex::Stop() should be invoked manually to avoid mess in the destruction order!"; |
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575 Stop(); |
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576 } |
0 | 577 } |
578 | |
579 | |
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580 |
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581 void ServerIndex::Stop() |
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582 { |
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583 if (!done_) |
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584 { |
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585 done_ = true; |
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586 |
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587 if (db_.HasFlushToDisk() && |
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588 flushThread_.joinable()) |
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589 { |
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590 flushThread_.join(); |
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591 } |
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592 |
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593 if (unstableResourcesMonitorThread_.joinable()) |
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594 { |
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595 unstableResourcesMonitorThread_.join(); |
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596 } |
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597 } |
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598 } |
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599 |
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600 |
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601 |
2188 | 602 void ServerIndex::SetInstanceMetadata(std::map<MetadataType, std::string>& instanceMetadata, |
603 int64_t instance, | |
604 MetadataType metadata, | |
605 const std::string& value) | |
606 { | |
607 db_.SetMetadata(instance, metadata, value); | |
608 instanceMetadata[metadata] = value; | |
609 } | |
610 | |
611 | |
612 | |
1006
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613 StoreStatus ServerIndex::Store(std::map<MetadataType, std::string>& instanceMetadata, |
1822 | 614 DicomInstanceToStore& instanceToStore, |
615 const Attachments& attachments) | |
0 | 616 { |
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617 boost::mutex::scoped_lock lock(mutex_); |
0 | 618 |
1822 | 619 const DicomMap& dicomSummary = instanceToStore.GetSummary(); |
620 const ServerIndex::MetadataMap& metadata = instanceToStore.GetMetadata(); | |
621 | |
1006
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622 instanceMetadata.clear(); |
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623 |
0 | 624 try |
625 { | |
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626 Transaction t(*this); |
0 | 627 |
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628 // Check whether this instance is already stored |
0 | 629 { |
432 | 630 ResourceType type; |
631 int64_t tmp; | |
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632 if (db_.LookupResource(tmp, type, instanceToStore.GetHasher().HashInstance())) |
432 | 633 { |
634 assert(type == ResourceType_Instance); | |
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635 |
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636 if (overwrite_) |
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637 { |
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638 // Overwrite the old instance |
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639 LOG(INFO) << "Overwriting instance: " << instanceToStore.GetHasher().HashInstance(); |
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640 db_.DeleteResource(tmp); |
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641 } |
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642 else |
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643 { |
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644 // Do nothing if the instance already exists |
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645 db_.GetAllMetadata(instanceMetadata, tmp); |
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646 return StoreStatus_AlreadyStored; |
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647 } |
432 | 648 } |
0 | 649 } |
650 | |
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651 // Ensure there is enough room in the storage for the new instance |
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652 uint64_t instanceSize = 0; |
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653 for (Attachments::const_iterator it = attachments.begin(); |
656 | 654 it != attachments.end(); ++it) |
268
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655 { |
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656 instanceSize += it->GetCompressedSize(); |
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657 } |
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658 |
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659 Recycle(instanceSize, instanceToStore.GetHasher().HashPatient()); |
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660 |
202 | 661 // Create the instance |
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662 int64_t instance = CreateResource(instanceToStore.GetHasher().HashInstance(), ResourceType_Instance); |
2120 | 663 ServerToolbox::StoreMainDicomTags(db_, instance, ResourceType_Instance, dicomSummary); |
202 | 664 |
432 | 665 // Detect up to which level the patient/study/series/instance |
666 // hierarchy must be created | |
667 int64_t patient = -1, study = -1, series = -1; | |
668 bool isNewPatient = false; | |
669 bool isNewStudy = false; | |
670 bool isNewSeries = false; | |
671 | |
0 | 672 { |
432 | 673 ResourceType dummy; |
674 | |
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675 if (db_.LookupResource(series, dummy, instanceToStore.GetHasher().HashSeries())) |
432 | 676 { |
677 assert(dummy == ResourceType_Series); | |
678 // The patient, the study and the series already exist | |
679 | |
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680 bool ok = (db_.LookupResource(patient, dummy, instanceToStore.GetHasher().HashPatient()) && |
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681 db_.LookupResource(study, dummy, instanceToStore.GetHasher().HashStudy())); |
432 | 682 assert(ok); |
683 } | |
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684 else if (db_.LookupResource(study, dummy, instanceToStore.GetHasher().HashStudy())) |
432 | 685 { |
686 assert(dummy == ResourceType_Study); | |
687 | |
688 // New series: The patient and the study already exist | |
689 isNewSeries = true; | |
690 | |
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691 bool ok = db_.LookupResource(patient, dummy, instanceToStore.GetHasher().HashPatient()); |
432 | 692 assert(ok); |
693 } | |
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694 else if (db_.LookupResource(patient, dummy, instanceToStore.GetHasher().HashPatient())) |
432 | 695 { |
696 assert(dummy == ResourceType_Patient); | |
697 | |
698 // New study and series: The patient already exist | |
699 isNewStudy = true; | |
700 isNewSeries = true; | |
701 } | |
702 else | |
703 { | |
704 // New patient, study and series: Nothing exists | |
705 isNewPatient = true; | |
706 isNewStudy = true; | |
707 isNewSeries = true; | |
708 } | |
709 } | |
710 | |
711 // Create the series if needed | |
712 if (isNewSeries) | |
713 { | |
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714 series = CreateResource(instanceToStore.GetHasher().HashSeries(), ResourceType_Series); |
2120 | 715 ServerToolbox::StoreMainDicomTags(db_, series, ResourceType_Series, dicomSummary); |
432 | 716 } |
202 | 717 |
432 | 718 // Create the study if needed |
719 if (isNewStudy) | |
720 { | |
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|
721 study = CreateResource(instanceToStore.GetHasher().HashStudy(), ResourceType_Study); |
2120 | 722 ServerToolbox::StoreMainDicomTags(db_, study, ResourceType_Study, dicomSummary); |
432 | 723 } |
724 | |
725 // Create the patient if needed | |
726 if (isNewPatient) | |
727 { | |
2898
e5e3253a1164
DicomInstanceToStore::GetHasher()
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diff
changeset
|
728 patient = CreateResource(instanceToStore.GetHasher().HashPatient(), ResourceType_Patient); |
2120 | 729 ServerToolbox::StoreMainDicomTags(db_, patient, ResourceType_Patient, dicomSummary); |
432 | 730 } |
202 | 731 |
432 | 732 // Create the parent-to-child links |
1247 | 733 db_.AttachChild(series, instance); |
432 | 734 |
735 if (isNewSeries) | |
736 { | |
1247 | 737 db_.AttachChild(study, series); |
0 | 738 } |
432 | 739 |
740 if (isNewStudy) | |
0 | 741 { |
1247 | 742 db_.AttachChild(patient, study); |
0 | 743 } |
744 | |
432 | 745 // Sanity checks |
746 assert(patient != -1); | |
747 assert(study != -1); | |
748 assert(series != -1); | |
749 assert(instance != -1); | |
750 | |
202 | 751 // Attach the files to the newly created instance |
232
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diff
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|
752 for (Attachments::const_iterator it = attachments.begin(); |
656 | 753 it != attachments.end(); ++it) |
232
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754 { |
1247 | 755 db_.AddAttachment(instance, *it); |
232
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756 } |
202 | 757 |
1002
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diff
changeset
|
758 // Attach the user-specified metadata |
1006
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|
759 for (MetadataMap::const_iterator |
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|
760 it = metadata.begin(); it != metadata.end(); ++it) |
1002
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anonymization refactoring
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changeset
|
761 { |
1006
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diff
changeset
|
762 switch (it->first.first) |
1002
b067017a8a5b
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diff
changeset
|
763 { |
1006
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changeset
|
764 case ResourceType_Patient: |
1247 | 765 db_.SetMetadata(patient, it->first.second, it->second); |
1006
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proper handling of metadata in Store
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diff
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|
766 break; |
1002
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|
767 |
1006
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diff
changeset
|
768 case ResourceType_Study: |
1247 | 769 db_.SetMetadata(study, it->first.second, it->second); |
1006
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diff
changeset
|
770 break; |
1002
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anonymization refactoring
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diff
changeset
|
771 |
1006
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proper handling of metadata in Store
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diff
changeset
|
772 case ResourceType_Series: |
1247 | 773 db_.SetMetadata(series, it->first.second, it->second); |
1006
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proper handling of metadata in Store
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diff
changeset
|
774 break; |
1002
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changeset
|
775 |
1006
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proper handling of metadata in Store
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parents:
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diff
changeset
|
776 case ResourceType_Instance: |
2188 | 777 SetInstanceMetadata(instanceMetadata, instance, it->first.second, it->second); |
1006
649d47854314
proper handling of metadata in Store
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diff
changeset
|
778 break; |
1002
b067017a8a5b
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diff
changeset
|
779 |
1006
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
780 default: |
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
781 throw OrthancException(ErrorCode_ParameterOutOfRange); |
1002
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diff
changeset
|
782 } |
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diff
changeset
|
783 } |
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diff
changeset
|
784 |
1004
a226e0959d8b
DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
785 // Attach the auto-computed metadata for the patient/study/series levels |
2475
8cc3ca64a534
Orthanc now uses UTC (universal time) instead of local time in its database
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2447
diff
changeset
|
786 std::string now = SystemToolbox::GetNowIsoString(true /* use UTC time (not local time) */); |
1247 | 787 db_.SetMetadata(series, MetadataType_LastUpdate, now); |
788 db_.SetMetadata(study, MetadataType_LastUpdate, now); | |
789 db_.SetMetadata(patient, MetadataType_LastUpdate, now); | |
1004
a226e0959d8b
DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
790 |
a226e0959d8b
DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1002
diff
changeset
|
791 // Attach the auto-computed metadata for the instance level, |
a226e0959d8b
DicomInstanceToStore
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parents:
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diff
changeset
|
792 // reflecting these additions into the input metadata map |
2188 | 793 SetInstanceMetadata(instanceMetadata, instance, MetadataType_Instance_ReceptionDate, now); |
2640
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ResourceModificationJob
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parents:
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diff
changeset
|
794 SetInstanceMetadata(instanceMetadata, instance, MetadataType_Instance_RemoteAet, |
2664
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serialization of DicomModalityStoreJob, OrthancPeerStoreJob and ResourceModificationJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
795 instanceToStore.GetOrigin().GetRemoteAetC()); |
2189
c4b3259c8bce
New metadata automatically computed at the instance level: "TransferSyntax"
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diff
changeset
|
796 SetInstanceMetadata(instanceMetadata, instance, MetadataType_Instance_Origin, |
2640
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ResourceModificationJob
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parents:
2573
diff
changeset
|
797 EnumerationToString(instanceToStore.GetOrigin().GetRequestOrigin())); |
2726
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diff
changeset
|
798 |
1823
0ef4e6e66b56
"Origin" metadata for the instances
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diff
changeset
|
799 { |
2189
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New metadata automatically computed at the instance level: "TransferSyntax"
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diff
changeset
|
800 std::string s; |
2726
46061a91c88a
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diff
changeset
|
801 |
2189
c4b3259c8bce
New metadata automatically computed at the instance level: "TransferSyntax"
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diff
changeset
|
802 if (instanceToStore.LookupTransferSyntax(s)) |
c4b3259c8bce
New metadata automatically computed at the instance level: "TransferSyntax"
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parents:
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diff
changeset
|
803 { |
2726
46061a91c88a
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parents:
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diff
changeset
|
804 // New in Orthanc 1.2.0 |
2189
c4b3259c8bce
New metadata automatically computed at the instance level: "TransferSyntax"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
805 SetInstanceMetadata(instanceMetadata, instance, MetadataType_Instance_TransferSyntax, s); |
c4b3259c8bce
New metadata automatically computed at the instance level: "TransferSyntax"
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parents:
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diff
changeset
|
806 } |
2726
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
807 |
46061a91c88a
new metadata (RemoteIP, CalledAET, HttpUsername), "?expand" metadata
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diff
changeset
|
808 if (instanceToStore.GetOrigin().LookupRemoteIp(s)) |
46061a91c88a
new metadata (RemoteIP, CalledAET, HttpUsername), "?expand" metadata
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changeset
|
809 { |
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new metadata (RemoteIP, CalledAET, HttpUsername), "?expand" metadata
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diff
changeset
|
810 // New in Orthanc 1.4.0 |
46061a91c88a
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
811 SetInstanceMetadata(instanceMetadata, instance, MetadataType_Instance_RemoteIp, s); |
46061a91c88a
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Sebastien Jodogne <s.jodogne@gmail.com>
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changeset
|
812 } |
46061a91c88a
new metadata (RemoteIP, CalledAET, HttpUsername), "?expand" metadata
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
813 |
46061a91c88a
new metadata (RemoteIP, CalledAET, HttpUsername), "?expand" metadata
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2717
diff
changeset
|
814 if (instanceToStore.GetOrigin().LookupCalledAet(s)) |
46061a91c88a
new metadata (RemoteIP, CalledAET, HttpUsername), "?expand" metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
815 { |
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new metadata (RemoteIP, CalledAET, HttpUsername), "?expand" metadata
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
816 // New in Orthanc 1.4.0 |
46061a91c88a
new metadata (RemoteIP, CalledAET, HttpUsername), "?expand" metadata
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
817 SetInstanceMetadata(instanceMetadata, instance, MetadataType_Instance_CalledAet, s); |
46061a91c88a
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diff
changeset
|
818 } |
46061a91c88a
new metadata (RemoteIP, CalledAET, HttpUsername), "?expand" metadata
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diff
changeset
|
819 |
46061a91c88a
new metadata (RemoteIP, CalledAET, HttpUsername), "?expand" metadata
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diff
changeset
|
820 if (instanceToStore.GetOrigin().LookupHttpUsername(s)) |
46061a91c88a
new metadata (RemoteIP, CalledAET, HttpUsername), "?expand" metadata
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diff
changeset
|
821 { |
46061a91c88a
new metadata (RemoteIP, CalledAET, HttpUsername), "?expand" metadata
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diff
changeset
|
822 // New in Orthanc 1.4.0 |
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Sebastien Jodogne <s.jodogne@gmail.com>
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changeset
|
823 SetInstanceMetadata(instanceMetadata, instance, MetadataType_Instance_HttpUsername, s); |
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new metadata (RemoteIP, CalledAET, HttpUsername), "?expand" metadata
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diff
changeset
|
824 } |
1823
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diff
changeset
|
825 } |
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"Origin" metadata for the instances
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
826 |
202 | 827 const DicomValue* value; |
2208
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New metadata automatically computed at the instance level: "SopClassUid"
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diff
changeset
|
828 if ((value = dicomSummary.TestAndGetValue(DICOM_TAG_SOP_CLASS_UID)) != NULL && |
90ea60bee5ff
New metadata automatically computed at the instance level: "SopClassUid"
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changeset
|
829 !value->IsNull() && |
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New metadata automatically computed at the instance level: "SopClassUid"
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diff
changeset
|
830 !value->IsBinary()) |
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New metadata automatically computed at the instance level: "SopClassUid"
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diff
changeset
|
831 { |
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New metadata automatically computed at the instance level: "SopClassUid"
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diff
changeset
|
832 SetInstanceMetadata(instanceMetadata, instance, MetadataType_Instance_SopClassUid, value->GetContent()); |
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New metadata automatically computed at the instance level: "SopClassUid"
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diff
changeset
|
833 } |
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diff
changeset
|
834 |
202 | 835 if ((value = dicomSummary.TestAndGetValue(DICOM_TAG_INSTANCE_NUMBER)) != NULL || |
836 (value = dicomSummary.TestAndGetValue(DICOM_TAG_IMAGE_INDEX)) != NULL) | |
0 | 837 { |
1737
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diff
changeset
|
838 if (!value->IsNull() && |
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diff
changeset
|
839 !value->IsBinary()) |
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removal of DicomStringValue and DicomNullValue
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parents:
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diff
changeset
|
840 { |
2188 | 841 SetInstanceMetadata(instanceMetadata, instance, MetadataType_Instance_IndexInSeries, value->GetContent()); |
1737
ec66a16aa398
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changeset
|
842 } |
0 | 843 } |
844 | |
1004
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DicomInstanceToStore
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diff
changeset
|
845 // Check whether the series of this new instance is now completed |
202 | 846 if (isNewSeries) |
847 { | |
1247 | 848 ComputeExpectedNumberOfInstances(db_, series, dicomSummary); |
202 | 849 } |
850 | |
205
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diff
changeset
|
851 SeriesStatus seriesStatus = GetSeriesStatus(series); |
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852 if (seriesStatus == SeriesStatus_Complete) |
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logging of completed series
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changeset
|
853 { |
2898
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DicomInstanceToStore::GetHasher()
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diff
changeset
|
854 LogChange(series, ChangeType_CompletedSeries, ResourceType_Series, instanceToStore.GetHasher().HashSeries()); |
205
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logging of completed series
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|
855 } |
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logging of completed series
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diff
changeset
|
856 |
511
3b735fdf320b
monitoring of stable patients/studies/series
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parents:
440
diff
changeset
|
857 // Mark the parent resources of this instance as unstable |
2898
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DicomInstanceToStore::GetHasher()
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diff
changeset
|
858 MarkAsUnstable(series, ResourceType_Series, instanceToStore.GetHasher().HashSeries()); |
e5e3253a1164
DicomInstanceToStore::GetHasher()
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diff
changeset
|
859 MarkAsUnstable(study, ResourceType_Study, instanceToStore.GetHasher().HashStudy()); |
e5e3253a1164
DicomInstanceToStore::GetHasher()
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diff
changeset
|
860 MarkAsUnstable(patient, ResourceType_Patient, instanceToStore.GetHasher().HashPatient()); |
511
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monitoring of stable patients/studies/series
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diff
changeset
|
861 |
278
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more efficient determination of storage size for recycling
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diff
changeset
|
862 t.Commit(instanceSize); |
268
4bc02e2254ec
preparing ServerIndex for recycling
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264
diff
changeset
|
863 |
0 | 864 return StoreStatus_Success; |
865 } | |
62 | 866 catch (OrthancException& e) |
0 | 867 { |
1247 | 868 LOG(ERROR) << "EXCEPTION [" << e.What() << "]"; |
0 | 869 } |
870 | |
871 return StoreStatus_Failure; | |
872 } | |
873 | |
874 | |
238 | 875 void ServerIndex::ComputeStatistics(Json::Value& target) |
0 | 876 { |
206
4453a010d0db
flush to disk thread
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parents:
205
diff
changeset
|
877 boost::mutex::scoped_lock lock(mutex_); |
238 | 878 target = Json::objectValue; |
0 | 879 |
278
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diff
changeset
|
880 uint64_t cs = currentStorageSize_; |
1247 | 881 assert(cs == db_.GetTotalCompressedSize()); |
882 uint64_t us = db_.GetTotalUncompressedSize(); | |
440
23e5b35e3c5c
statistics for patient/studies/series/instances
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parents:
438
diff
changeset
|
883 target["TotalDiskSize"] = boost::lexical_cast<std::string>(cs); |
238 | 884 target["TotalUncompressedSize"] = boost::lexical_cast<std::string>(us); |
1310
61ce8147f30d
custom database back-end
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parents:
1306
diff
changeset
|
885 target["TotalDiskSizeMB"] = static_cast<unsigned int>(cs / MEGA_BYTES); |
61ce8147f30d
custom database back-end
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886 target["TotalUncompressedSizeMB"] = static_cast<unsigned int>(us / MEGA_BYTES); |
238 | 887 |
1247 | 888 target["CountPatients"] = static_cast<unsigned int>(db_.GetResourceCount(ResourceType_Patient)); |
889 target["CountStudies"] = static_cast<unsigned int>(db_.GetResourceCount(ResourceType_Study)); | |
890 target["CountSeries"] = static_cast<unsigned int>(db_.GetResourceCount(ResourceType_Series)); | |
891 target["CountInstances"] = static_cast<unsigned int>(db_.GetResourceCount(ResourceType_Instance)); | |
238 | 892 } |
893 | |
187
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894 |
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895 |
585 | 896 SeriesStatus ServerIndex::GetSeriesStatus(int64_t id) |
199 | 897 { |
898 // Get the expected number of instances in this series (from the metadata) | |
1238 | 899 int64_t expected; |
900 if (!GetMetadataAsInteger(expected, id, MetadataType_Series_ExpectedNumberOfInstances)) | |
199 | 901 { |
902 return SeriesStatus_Unknown; | |
903 } | |
904 | |
905 // Loop over the instances of this series | |
906 std::list<int64_t> children; | |
1247 | 907 db_.GetChildrenInternalId(children, id); |
199 | 908 |
1238 | 909 std::set<int64_t> instances; |
199 | 910 for (std::list<int64_t>::const_iterator |
656 | 911 it = children.begin(); it != children.end(); ++it) |
199 | 912 { |
913 // Get the index of this instance in the series | |
1238 | 914 int64_t index; |
915 if (!GetMetadataAsInteger(index, *it, MetadataType_Instance_IndexInSeries)) | |
199 | 916 { |
917 return SeriesStatus_Unknown; | |
918 } | |
919 | |
656 | 920 if (!(index > 0 && index <= expected)) |
199 | 921 { |
922 // Out-of-range instance index | |
923 return SeriesStatus_Inconsistent; | |
924 } | |
925 | |
926 if (instances.find(index) != instances.end()) | |
927 { | |
928 // Twice the same instance index | |
929 return SeriesStatus_Inconsistent; | |
930 } | |
931 | |
932 instances.insert(index); | |
933 } | |
934 | |
1238 | 935 if (static_cast<int64_t>(instances.size()) == expected) |
199 | 936 { |
937 return SeriesStatus_Complete; | |
938 } | |
939 else | |
940 { | |
941 return SeriesStatus_Missing; | |
942 } | |
943 } | |
944 | |
945 | |
202 | 946 void ServerIndex::MainDicomTagsToJson(Json::Value& target, |
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947 int64_t resourceId, |
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948 ResourceType resourceType) |
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949 { |
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950 DicomMap tags; |
1247 | 951 db_.GetMainDicomTags(tags, resourceId); |
1676
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952 |
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953 if (resourceType == ResourceType_Study) |
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954 { |
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955 DicomMap t1, t2; |
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956 tags.ExtractStudyInformation(t1); |
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957 tags.ExtractPatientInformation(t2); |
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958 |
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959 target["MainDicomTags"] = Json::objectValue; |
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960 FromDcmtkBridge::ToJson(target["MainDicomTags"], t1, true); |
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961 |
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962 target["PatientMainDicomTags"] = Json::objectValue; |
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963 FromDcmtkBridge::ToJson(target["PatientMainDicomTags"], t2, true); |
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964 } |
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965 else |
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966 { |
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967 target["MainDicomTags"] = Json::objectValue; |
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968 FromDcmtkBridge::ToJson(target["MainDicomTags"], tags, true); |
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969 } |
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970 } |
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971 |
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972 bool ServerIndex::LookupResource(Json::Value& result, |
199 | 973 const std::string& publicId, |
974 ResourceType expectedType) | |
198
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975 { |
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976 result = Json::objectValue; |
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977 |
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978 boost::mutex::scoped_lock lock(mutex_); |
199 | 979 |
198
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980 // Lookup for the requested resource |
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981 int64_t id; |
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982 ResourceType type; |
1294 | 983 if (!db_.LookupResource(id, type, publicId) || |
199 | 984 type != expectedType) |
198
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985 { |
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986 return false; |
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987 } |
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988 |
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989 // Find the parent resource (if it exists) |
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990 if (type != ResourceType_Patient) |
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991 { |
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992 int64_t parentId; |
1247 | 993 if (!db_.LookupParent(parentId, id)) |
198
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994 { |
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995 throw OrthancException(ErrorCode_InternalError); |
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996 } |
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997 |
1247 | 998 std::string parent = db_.GetPublicId(parentId); |
198
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999 |
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1000 switch (type) |
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1001 { |
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1002 case ResourceType_Study: |
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1003 result["ParentPatient"] = parent; |
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1004 break; |
198
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1005 |
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1006 case ResourceType_Series: |
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1007 result["ParentStudy"] = parent; |
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1008 break; |
198
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1009 |
269
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1010 case ResourceType_Instance: |
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1011 result["ParentSeries"] = parent; |
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1012 break; |
198
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1013 |
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1014 default: |
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1015 throw OrthancException(ErrorCode_InternalError); |
198
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1016 } |
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1017 } |
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1018 |
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1019 // List the children resources |
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1020 std::list<std::string> children; |
1247 | 1021 db_.GetChildrenPublicId(children, id); |
198
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1022 |
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1023 if (type != ResourceType_Instance) |
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1024 { |
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1025 Json::Value c = Json::arrayValue; |
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1026 |
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1027 for (std::list<std::string>::const_iterator |
656 | 1028 it = children.begin(); it != children.end(); ++it) |
198
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1029 { |
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1030 c.append(*it); |
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1031 } |
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1032 |
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1033 switch (type) |
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1034 { |
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1035 case ResourceType_Patient: |
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1036 result["Studies"] = c; |
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1037 break; |
198
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1038 |
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1039 case ResourceType_Study: |
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1040 result["Series"] = c; |
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1041 break; |
198
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1042 |
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1043 case ResourceType_Series: |
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1044 result["Instances"] = c; |
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1045 break; |
198
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1046 |
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1047 default: |
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1048 throw OrthancException(ErrorCode_InternalError); |
198
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1049 } |
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1050 } |
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1051 |
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1052 // Set the resource type |
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1053 switch (type) |
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1054 { |
269
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1055 case ResourceType_Patient: |
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1056 result["Type"] = "Patient"; |
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1057 break; |
198
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1058 |
269
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diff
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|
1059 case ResourceType_Study: |
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268
diff
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|
1060 result["Type"] = "Study"; |
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diff
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|
1061 break; |
199 | 1062 |
269
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diff
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|
1063 case ResourceType_Series: |
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diff
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|
1064 { |
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diff
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|
1065 result["Type"] = "Series"; |
434
ccf3a0a43dac
EnumerationDictionary
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
433
diff
changeset
|
1066 result["Status"] = EnumerationToString(GetSeriesStatus(id)); |
198
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diff
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|
1067 |
1238 | 1068 int64_t i; |
1237 | 1069 if (GetMetadataAsInteger(i, id, MetadataType_Series_ExpectedNumberOfInstances)) |
1238 | 1070 result["ExpectedNumberOfInstances"] = static_cast<int>(i); |
269
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diff
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|
1071 else |
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268
diff
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|
1072 result["ExpectedNumberOfInstances"] = Json::nullValue; |
200
9c58b2b03cf0
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diff
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|
1073 |
269
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diff
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|
1074 break; |
200
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diff
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|
1075 } |
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diff
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|
1076 |
269
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diff
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|
1077 case ResourceType_Instance: |
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|
1078 { |
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|
1079 result["Type"] = "Instance"; |
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|
1080 |
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diff
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|
1081 FileInfo attachment; |
1247 | 1082 if (!db_.LookupAttachment(attachment, id, FileContentType_Dicom)) |
269
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|
1083 { |
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diff
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|
1084 throw OrthancException(ErrorCode_InternalError); |
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diff
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|
1085 } |
200
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refactoring of read operations
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diff
changeset
|
1086 |
269
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diff
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|
1087 result["FileSize"] = static_cast<unsigned int>(attachment.GetUncompressedSize()); |
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diff
changeset
|
1088 result["FileUuid"] = attachment.GetUuid(); |
200
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refactoring of read operations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
199
diff
changeset
|
1089 |
1238 | 1090 int64_t i; |
1237 | 1091 if (GetMetadataAsInteger(i, id, MetadataType_Instance_IndexInSeries)) |
1238 | 1092 result["IndexInSeries"] = static_cast<int>(i); |
269
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diff
changeset
|
1093 else |
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diff
changeset
|
1094 result["IndexInSeries"] = Json::nullValue; |
198
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diff
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|
1095 |
269
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diff
changeset
|
1096 break; |
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diff
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|
1097 } |
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diff
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|
1098 |
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diff
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|
1099 default: |
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diff
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|
1100 throw OrthancException(ErrorCode_InternalError); |
198
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1101 } |
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|
1102 |
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diff
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|
1103 // Record the remaining information |
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197
diff
changeset
|
1104 result["ID"] = publicId; |
1668
de1413733c97
reconstructing main dicom tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1555
diff
changeset
|
1105 MainDicomTagsToJson(result, id, type); |
198
663cc6c46d0a
before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
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197
diff
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|
1106 |
315 | 1107 std::string tmp; |
1108 | |
1247 | 1109 if (db_.LookupMetadata(tmp, id, MetadataType_AnonymizedFrom)) |
1236 | 1110 { |
315 | 1111 result["AnonymizedFrom"] = tmp; |
1236 | 1112 } |
315 | 1113 |
1247 | 1114 if (db_.LookupMetadata(tmp, id, MetadataType_ModifiedFrom)) |
1236 | 1115 { |
315 | 1116 result["ModifiedFrom"] = tmp; |
1236 | 1117 } |
315 | 1118 |
511
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parents:
440
diff
changeset
|
1119 if (type == ResourceType_Patient || |
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440
diff
changeset
|
1120 type == ResourceType_Study || |
3b735fdf320b
monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
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440
diff
changeset
|
1121 type == ResourceType_Series) |
3b735fdf320b
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Sebastien Jodogne <s.jodogne@gmail.com>
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440
diff
changeset
|
1122 { |
3b735fdf320b
monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
440
diff
changeset
|
1123 result["IsStable"] = !unstableResources_.Contains(id); |
1148
ac36589f699e
LastUpdate metadata is now always returned for patients, studies and series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1139
diff
changeset
|
1124 |
1247 | 1125 if (db_.LookupMetadata(tmp, id, MetadataType_LastUpdate)) |
1236 | 1126 { |
1148
ac36589f699e
LastUpdate metadata is now always returned for patients, studies and series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1139
diff
changeset
|
1127 result["LastUpdate"] = tmp; |
1236 | 1128 } |
511
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monitoring of stable patients/studies/series
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diff
changeset
|
1129 } |
3b735fdf320b
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diff
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|
1130 |
198
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diff
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|
1131 return true; |
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|
1132 } |
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1133 |
0 | 1134 |
232
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refactoring of attachments
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231
diff
changeset
|
1135 bool ServerIndex::LookupAttachment(FileInfo& attachment, |
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refactoring of attachments
Sebastien Jodogne <s.jodogne@gmail.com>
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231
diff
changeset
|
1136 const std::string& instanceUuid, |
233 | 1137 FileContentType contentType) |
0 | 1138 { |
206
4453a010d0db
flush to disk thread
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
205
diff
changeset
|
1139 boost::mutex::scoped_lock lock(mutex_); |
0 | 1140 |
193
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failed attempt to compile with linux standard base
Sebastien Jodogne <s.jodogne@gmail.com>
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192
diff
changeset
|
1141 int64_t id; |
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failed attempt to compile with linux standard base
Sebastien Jodogne <s.jodogne@gmail.com>
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192
diff
changeset
|
1142 ResourceType type; |
1294 | 1143 if (!db_.LookupResource(id, type, instanceUuid)) |
192
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refactoring getfile
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diff
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|
1144 { |
1113
ba5c0908600c
Refactoring of HttpOutput ("Content-Length" header is now always sent)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1102
diff
changeset
|
1145 throw OrthancException(ErrorCode_UnknownResource); |
192
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191
diff
changeset
|
1146 } |
193
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192
diff
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|
1147 |
1247 | 1148 if (db_.LookupAttachment(attachment, id, contentType)) |
232
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diff
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|
1149 { |
233 | 1150 assert(attachment.GetContentType() == contentType); |
232
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diff
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|
1151 return true; |
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231
diff
changeset
|
1152 } |
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diff
changeset
|
1153 else |
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231
diff
changeset
|
1154 { |
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231
diff
changeset
|
1155 return false; |
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diff
changeset
|
1156 } |
192
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|
1157 } |
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191
diff
changeset
|
1158 |
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diff
changeset
|
1159 |
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191
diff
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|
1160 |
1354 | 1161 void ServerIndex::GetAllUuids(std::list<std::string>& target, |
190 | 1162 ResourceType resourceType) |
0 | 1163 { |
1357 | 1164 boost::mutex::scoped_lock lock(mutex_); |
1165 db_.GetAllPublicIds(target, resourceType); | |
0 | 1166 } |
1167 | |
1168 | |
1509
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1486
diff
changeset
|
1169 void ServerIndex::GetAllUuids(std::list<std::string>& target, |
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changeset
|
1170 ResourceType resourceType, |
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diff
changeset
|
1171 size_t since, |
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diff
changeset
|
1172 size_t limit) |
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|
1173 { |
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|
1174 if (limit == 0) |
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|
1175 { |
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|
1176 target.clear(); |
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|
1177 return; |
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|
1178 } |
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changeset
|
1179 |
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diff
changeset
|
1180 boost::mutex::scoped_lock lock(mutex_); |
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|
1181 db_.GetAllPublicIds(target, resourceType, since, limit); |
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|
1182 } |
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changeset
|
1183 |
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diff
changeset
|
1184 |
1244 | 1185 template <typename T> |
1186 static void FormatLog(Json::Value& target, | |
1187 const std::list<T>& log, | |
1188 const std::string& name, | |
1189 bool done, | |
1190 int64_t since) | |
1240 | 1191 { |
1192 Json::Value items = Json::arrayValue; | |
1244 | 1193 for (typename std::list<T>::const_iterator |
1304 | 1194 it = log.begin(); it != log.end(); ++it) |
1240 | 1195 { |
1196 Json::Value item; | |
1197 it->Format(item); | |
1198 items.append(item); | |
1199 } | |
1200 | |
1201 target = Json::objectValue; | |
1244 | 1202 target[name] = items; |
1240 | 1203 target["Done"] = done; |
1204 | |
1305 | 1205 int64_t last = (log.empty() ? since : log.back().GetSeq()); |
1240 | 1206 target["Last"] = static_cast<int>(last); |
1207 } | |
1208 | |
1209 | |
1247 | 1210 void ServerIndex::GetChanges(Json::Value& target, |
204 | 1211 int64_t since, |
0 | 1212 unsigned int maxResults) |
1213 { | |
1240 | 1214 std::list<ServerIndexChange> changes; |
1215 bool done; | |
1216 | |
1217 { | |
1218 boost::mutex::scoped_lock lock(mutex_); | |
2717
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changeset
|
1219 |
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changeset
|
1220 // Fix wrt. Orthanc <= 1.3.2: A transaction was missing, as |
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changeset
|
1221 // "GetLastChange()" involves calls to "GetPublicId()" |
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changeset
|
1222 Transaction transaction(*this); |
1247 | 1223 db_.GetChanges(changes, done, since, maxResults); |
2717
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changeset
|
1224 transaction.Commit(0); |
1240 | 1225 } |
1226 | |
1244 | 1227 FormatLog(target, changes, "Changes", done, since); |
237
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233
diff
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|
1228 } |
0 | 1229 |
1240 | 1230 |
1247 | 1231 void ServerIndex::GetLastChange(Json::Value& target) |
237
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diff
changeset
|
1232 { |
1240 | 1233 std::list<ServerIndexChange> changes; |
1234 | |
1235 { | |
1236 boost::mutex::scoped_lock lock(mutex_); | |
2717
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|
1237 |
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changeset
|
1238 // Fix wrt. Orthanc <= 1.3.2: A transaction was missing, as |
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changeset
|
1239 // "GetLastChange()" involves calls to "GetPublicId()" |
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|
1240 Transaction transaction(*this); |
1247 | 1241 db_.GetLastChange(changes); |
2717
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changeset
|
1242 transaction.Commit(0); |
1240 | 1243 } |
1244 | |
1244 | 1245 FormatLog(target, changes, "Changes", true, 0); |
0 | 1246 } |
231 | 1247 |
1240 | 1248 |
231 | 1249 void ServerIndex::LogExportedResource(const std::string& publicId, |
1250 const std::string& remoteModality) | |
1251 { | |
1252 boost::mutex::scoped_lock lock(mutex_); | |
1310
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1253 Transaction transaction(*this); |
231 | 1254 |
1255 int64_t id; | |
1256 ResourceType type; | |
1294 | 1257 if (!db_.LookupResource(id, type, publicId)) |
231 | 1258 { |
2573
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1259 throw OrthancException(ErrorCode_InexistentItem); |
231 | 1260 } |
1261 | |
1262 std::string patientId; | |
1263 std::string studyInstanceUid; | |
1264 std::string seriesInstanceUid; | |
1265 std::string sopInstanceUid; | |
1266 | |
1267 int64_t currentId = id; | |
1268 ResourceType currentType = type; | |
1269 | |
1270 // Iteratively go up inside the patient/study/series/instance hierarchy | |
1271 bool done = false; | |
1272 while (!done) | |
1273 { | |
1274 DicomMap map; | |
1247 | 1275 db_.GetMainDicomTags(map, currentId); |
231 | 1276 |
1277 switch (currentType) | |
1278 { | |
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1279 case ResourceType_Patient: |
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1280 if (map.HasTag(DICOM_TAG_PATIENT_ID)) |
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1281 { |
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1282 patientId = map.GetValue(DICOM_TAG_PATIENT_ID).GetContent(); |
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1283 } |
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1284 done = true; |
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1285 break; |
231 | 1286 |
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1287 case ResourceType_Study: |
2090
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1288 if (map.HasTag(DICOM_TAG_STUDY_INSTANCE_UID)) |
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1289 { |
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1290 studyInstanceUid = map.GetValue(DICOM_TAG_STUDY_INSTANCE_UID).GetContent(); |
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1291 } |
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1292 currentType = ResourceType_Patient; |
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1293 break; |
231 | 1294 |
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1295 case ResourceType_Series: |
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1296 if (map.HasTag(DICOM_TAG_SERIES_INSTANCE_UID)) |
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1297 { |
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1298 seriesInstanceUid = map.GetValue(DICOM_TAG_SERIES_INSTANCE_UID).GetContent(); |
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1299 } |
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1300 currentType = ResourceType_Study; |
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1301 break; |
231 | 1302 |
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1303 case ResourceType_Instance: |
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1304 if (map.HasTag(DICOM_TAG_SOP_INSTANCE_UID)) |
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1305 { |
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1306 sopInstanceUid = map.GetValue(DICOM_TAG_SOP_INSTANCE_UID).GetContent(); |
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1307 } |
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1308 currentType = ResourceType_Series; |
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1309 break; |
231 | 1310 |
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1311 default: |
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1312 throw OrthancException(ErrorCode_InternalError); |
231 | 1313 } |
1314 | |
1315 // If we have not reached the Patient level, find the parent of | |
1316 // the current resource | |
1317 if (!done) | |
1318 { | |
1247 | 1319 bool ok = db_.LookupParent(currentId, currentId); |
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1320 assert(ok); |
231 | 1321 } |
1322 } | |
1323 | |
1246 | 1324 ExportedResource resource(-1, |
1325 type, | |
1326 publicId, | |
1327 remoteModality, | |
2475
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|
1328 SystemToolbox::GetNowIsoString(true /* use UTC time (not local time) */), |
1246 | 1329 patientId, |
1330 studyInstanceUid, | |
1331 seriesInstanceUid, | |
1332 sopInstanceUid); | |
1310
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1333 |
1247 | 1334 db_.LogExportedResource(resource); |
1310
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1335 transaction.Commit(0); |
231 | 1336 } |
1337 | |
1338 | |
1247 | 1339 void ServerIndex::GetExportedResources(Json::Value& target, |
231 | 1340 int64_t since, |
1341 unsigned int maxResults) | |
1342 { | |
1244 | 1343 std::list<ExportedResource> exported; |
1344 bool done; | |
1345 | |
1346 { | |
1347 boost::mutex::scoped_lock lock(mutex_); | |
1247 | 1348 db_.GetExportedResources(exported, done, since, maxResults); |
1244 | 1349 } |
1350 | |
1351 FormatLog(target, exported, "Exports", done, since); | |
231 | 1352 } |
237
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1353 |
1244 | 1354 |
1247 | 1355 void ServerIndex::GetLastExportedResource(Json::Value& target) |
237
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1356 { |
1244 | 1357 std::list<ExportedResource> exported; |
1358 | |
1359 { | |
1360 boost::mutex::scoped_lock lock(mutex_); | |
1247 | 1361 db_.GetLastExportedResource(exported); |
1244 | 1362 } |
1363 | |
1364 FormatLog(target, exported, "Exports", true, 0); | |
237
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1365 } |
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1366 |
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1367 |
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1368 bool ServerIndex::IsRecyclingNeeded(uint64_t instanceSize) |
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1369 { |
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1370 if (maximumStorageSize_ != 0) |
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1371 { |
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|
1372 uint64_t currentSize = currentStorageSize_ - listener_->GetSizeOfFilesToRemove(); |
1247 | 1373 assert(db_.GetTotalCompressedSize() == currentSize); |
278
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1374 |
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1375 if (currentSize + instanceSize > maximumStorageSize_) |
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1376 { |
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1377 return true; |
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1378 } |
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1379 } |
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1380 |
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1381 if (maximumPatients_ != 0) |
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1382 { |
1247 | 1383 uint64_t patientCount = db_.GetResourceCount(ResourceType_Patient); |
269
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1384 if (patientCount > maximumPatients_) |
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1385 { |
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1386 return true; |
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1387 } |
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1388 } |
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1389 |
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1390 return false; |
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1391 } |
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1392 |
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1393 |
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1394 void ServerIndex::Recycle(uint64_t instanceSize, |
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1395 const std::string& newPatientId) |
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1396 { |
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1397 if (!IsRecyclingNeeded(instanceSize)) |
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1398 { |
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1399 return; |
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1400 } |
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1401 |
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1402 // Check whether other DICOM instances from this patient are |
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1403 // already stored |
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1404 int64_t patientToAvoid; |
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1405 ResourceType type; |
1294 | 1406 bool hasPatientToAvoid = db_.LookupResource(patientToAvoid, type, newPatientId); |
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1407 |
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1408 if (hasPatientToAvoid && type != ResourceType_Patient) |
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1409 { |
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1410 throw OrthancException(ErrorCode_InternalError); |
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1411 } |
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1412 |
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1413 // Iteratively select patient to remove until there is enough |
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1414 // space in the DICOM store |
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1415 int64_t patientToRecycle; |
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1416 while (true) |
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1417 { |
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1418 // If other instances of this patient are already in the store, |
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1419 // we must avoid to recycle them |
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1420 bool ok = hasPatientToAvoid ? |
1247 | 1421 db_.SelectPatientToRecycle(patientToRecycle, patientToAvoid) : |
1422 db_.SelectPatientToRecycle(patientToRecycle); | |
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1423 |
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1424 if (!ok) |
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1425 { |
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1426 throw OrthancException(ErrorCode_FullStorage); |
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1427 } |
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1428 |
1331
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Prevent freeze on C-FIND if no DICOM tag is to be returned
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1429 VLOG(1) << "Recycling one patient"; |
1247 | 1430 db_.DeleteResource(patientToRecycle); |
269
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1431 |
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1432 if (!IsRecyclingNeeded(instanceSize)) |
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1433 { |
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1434 // OK, we're done |
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1435 break; |
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1436 } |
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1437 } |
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1438 } |
269
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1439 |
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1440 void ServerIndex::SetMaximumPatientCount(unsigned int count) |
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1441 { |
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1442 boost::mutex::scoped_lock lock(mutex_); |
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1443 maximumPatients_ = count; |
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1444 |
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1445 if (count == 0) |
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1446 { |
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1447 LOG(WARNING) << "No limit on the number of stored patients"; |
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1448 } |
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1449 else |
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1450 { |
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1451 LOG(WARNING) << "At most " << count << " patients will be stored"; |
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1452 } |
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1453 |
269
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1454 StandaloneRecycling(); |
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1455 } |
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1456 |
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1457 void ServerIndex::SetMaximumStorageSize(uint64_t size) |
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1458 { |
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1459 boost::mutex::scoped_lock lock(mutex_); |
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|
1460 maximumStorageSize_ = size; |
270
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1461 |
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1462 if (size == 0) |
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|
1463 { |
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1464 LOG(WARNING) << "No limit on the size of the storage area"; |
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1465 } |
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|
1466 else |
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|
1467 { |
440
23e5b35e3c5c
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diff
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|
1468 LOG(WARNING) << "At most " << (size / MEGA_BYTES) << "MB will be used for the storage area"; |
270
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1469 } |
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|
1470 |
269
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|
1471 StandaloneRecycling(); |
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1472 } |
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1473 |
2825
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diff
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|
1474 void ServerIndex::SetOverwriteInstances(bool overwrite) |
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New configuration option "OverwriteInstances" to choose how duplicate SOPInstanceUID are handled
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diff
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|
1475 { |
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New configuration option "OverwriteInstances" to choose how duplicate SOPInstanceUID are handled
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2726
diff
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|
1476 boost::mutex::scoped_lock lock(mutex_); |
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diff
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|
1477 overwrite_ = overwrite; |
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diff
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|
1478 } |
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2726
diff
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|
1479 |
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|
1480 |
272
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|
1481 void ServerIndex::StandaloneRecycling() |
269
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|
1482 { |
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1483 // WARNING: No mutex here, do not include this as a public method |
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|
1484 Transaction t(*this); |
269
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|
1485 Recycle(0, ""); |
278
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|
1486 t.Commit(0); |
269
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1487 } |
272
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|
1488 |
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|
1489 |
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|
1490 bool ServerIndex::IsProtectedPatient(const std::string& publicId) |
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|
1491 { |
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|
1492 boost::mutex::scoped_lock lock(mutex_); |
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|
1493 |
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1494 // Lookup for the requested resource |
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1495 int64_t id; |
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|
1496 ResourceType type; |
1294 | 1497 if (!db_.LookupResource(id, type, publicId) || |
272
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|
1498 type != ResourceType_Patient) |
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|
1499 { |
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|
1500 throw OrthancException(ErrorCode_ParameterOutOfRange); |
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1501 } |
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1502 |
1247 | 1503 return db_.IsProtectedPatient(id); |
272
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1504 } |
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diff
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|
1505 |
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|
1506 |
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|
1507 void ServerIndex::SetProtectedPatient(const std::string& publicId, |
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|
1508 bool isProtected) |
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|
1509 { |
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|
1510 boost::mutex::scoped_lock lock(mutex_); |
1310
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|
1511 Transaction transaction(*this); |
272
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|
1512 |
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1513 // Lookup for the requested resource |
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1514 int64_t id; |
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|
1515 ResourceType type; |
1294 | 1516 if (!db_.LookupResource(id, type, publicId) || |
272
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|
1517 type != ResourceType_Patient) |
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|
1518 { |
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|
1519 throw OrthancException(ErrorCode_ParameterOutOfRange); |
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|
1520 } |
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1521 |
1247 | 1522 db_.SetProtectedPatient(id, isProtected); |
1310
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|
1523 transaction.Commit(0); |
272
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|
1524 |
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1525 if (isProtected) |
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1526 LOG(INFO) << "Patient " << publicId << " has been protected"; |
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1527 else |
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1528 LOG(INFO) << "Patient " << publicId << " has been unprotected"; |
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1529 } |
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1530 |
304 | 1531 |
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|
1532 void ServerIndex::GetChildren(std::list<std::string>& result, |
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changeset
|
1533 const std::string& publicId) |
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|
1534 { |
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|
1535 result.clear(); |
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|
1536 |
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changeset
|
1537 boost::mutex::scoped_lock lock(mutex_); |
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|
1538 |
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changeset
|
1539 ResourceType type; |
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|
1540 int64_t resource; |
1294 | 1541 if (!db_.LookupResource(resource, type, publicId)) |
714
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|
1542 { |
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|
1543 throw OrthancException(ErrorCode_UnknownResource); |
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|
1544 } |
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|
1545 |
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changeset
|
1546 if (type == ResourceType_Instance) |
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|
1547 { |
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changeset
|
1548 // An instance cannot have a child |
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changeset
|
1549 throw OrthancException(ErrorCode_BadParameterType); |
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|
1550 } |
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changeset
|
1551 |
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changeset
|
1552 std::list<int64_t> tmp; |
1247 | 1553 db_.GetChildrenInternalId(tmp, resource); |
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|
1554 |
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changeset
|
1555 for (std::list<int64_t>::const_iterator |
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changeset
|
1556 it = tmp.begin(); it != tmp.end(); ++it) |
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changeset
|
1557 { |
1247 | 1558 result.push_back(db_.GetPublicId(*it)); |
714
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|
1559 } |
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changeset
|
1560 } |
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changeset
|
1561 |
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1562 |
304 | 1563 void ServerIndex::GetChildInstances(std::list<std::string>& result, |
1564 const std::string& publicId) | |
1565 { | |
1566 result.clear(); | |
1567 | |
1568 boost::mutex::scoped_lock lock(mutex_); | |
1569 | |
1570 ResourceType type; | |
1571 int64_t top; | |
1294 | 1572 if (!db_.LookupResource(top, type, publicId)) |
304 | 1573 { |
1574 throw OrthancException(ErrorCode_UnknownResource); | |
1575 } | |
1576 | |
1577 if (type == ResourceType_Instance) | |
1578 { | |
1579 // The resource is already an instance: Do not go down the hierarchy | |
1580 result.push_back(publicId); | |
1581 return; | |
1582 } | |
1583 | |
1584 std::stack<int64_t> toExplore; | |
1585 toExplore.push(top); | |
1586 | |
1587 std::list<int64_t> tmp; | |
1588 | |
1589 while (!toExplore.empty()) | |
1590 { | |
1591 // Get the internal ID of the current resource | |
1592 int64_t resource = toExplore.top(); | |
1593 toExplore.pop(); | |
1594 | |
1247 | 1595 if (db_.GetResourceType(resource) == ResourceType_Instance) |
304 | 1596 { |
1247 | 1597 result.push_back(db_.GetPublicId(resource)); |
304 | 1598 } |
1599 else | |
1600 { | |
1601 // Tag all the children of this resource as to be explored | |
1247 | 1602 db_.GetChildrenInternalId(tmp, resource); |
304 | 1603 for (std::list<int64_t>::const_iterator |
656 | 1604 it = tmp.begin(); it != tmp.end(); ++it) |
304 | 1605 { |
1606 toExplore.push(*it); | |
1607 } | |
1608 } | |
1609 } | |
1610 } | |
1611 | |
306
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1612 |
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1613 void ServerIndex::SetMetadata(const std::string& publicId, |
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1614 MetadataType type, |
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1615 const std::string& value) |
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1616 { |
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1617 boost::mutex::scoped_lock lock(mutex_); |
1773
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1618 Transaction t(*this); |
306
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1619 |
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1620 ResourceType rtype; |
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1621 int64_t id; |
1294 | 1622 if (!db_.LookupResource(id, rtype, publicId)) |
306
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1623 { |
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1624 throw OrthancException(ErrorCode_UnknownResource); |
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1625 } |
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1626 |
1247 | 1627 db_.SetMetadata(id, type, value); |
1773
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1628 |
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1629 if (IsUserMetadata(type)) |
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1630 { |
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1631 LogChange(id, ChangeType_UpdatedMetadata, rtype, publicId); |
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1632 } |
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1633 |
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1634 t.Commit(0); |
306
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1635 } |
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1636 |
438 | 1637 |
1638 void ServerIndex::DeleteMetadata(const std::string& publicId, | |
1639 MetadataType type) | |
1640 { | |
1641 boost::mutex::scoped_lock lock(mutex_); | |
1773
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1642 Transaction t(*this); |
438 | 1643 |
1644 ResourceType rtype; | |
1645 int64_t id; | |
1294 | 1646 if (!db_.LookupResource(id, rtype, publicId)) |
438 | 1647 { |
1648 throw OrthancException(ErrorCode_UnknownResource); | |
1649 } | |
1650 | |
1247 | 1651 db_.DeleteMetadata(id, type); |
1773
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1652 |
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1653 if (IsUserMetadata(type)) |
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1654 { |
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1655 LogChange(id, ChangeType_UpdatedMetadata, rtype, publicId); |
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1656 } |
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1657 |
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1658 t.Commit(0); |
438 | 1659 } |
1660 | |
1661 | |
306
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1662 bool ServerIndex::LookupMetadata(std::string& target, |
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1663 const std::string& publicId, |
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1664 MetadataType type) |
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1665 { |
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1666 boost::mutex::scoped_lock lock(mutex_); |
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1667 |
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1668 ResourceType rtype; |
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1669 int64_t id; |
1294 | 1670 if (!db_.LookupResource(id, rtype, publicId)) |
306
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1671 { |
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1672 throw OrthancException(ErrorCode_UnknownResource); |
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1673 } |
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1674 |
1247 | 1675 return db_.LookupMetadata(target, id, type); |
306
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1676 } |
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1677 |
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1678 |
739 | 1679 void ServerIndex::ListAvailableMetadata(std::list<MetadataType>& target, |
436
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1680 const std::string& publicId) |
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1681 { |
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1682 boost::mutex::scoped_lock lock(mutex_); |
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1683 |
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1684 ResourceType rtype; |
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1685 int64_t id; |
1294 | 1686 if (!db_.LookupResource(id, rtype, publicId)) |
436
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1687 { |
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1688 throw OrthancException(ErrorCode_UnknownResource); |
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1689 } |
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1690 |
1247 | 1691 db_.ListAvailableMetadata(target, id); |
436
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1692 } |
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1693 |
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1694 |
697
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1695 void ServerIndex::ListAvailableAttachments(std::list<FileContentType>& target, |
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1696 const std::string& publicId, |
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1697 ResourceType expectedType) |
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1698 { |
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1699 boost::mutex::scoped_lock lock(mutex_); |
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1700 |
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1701 ResourceType type; |
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1702 int64_t id; |
1294 | 1703 if (!db_.LookupResource(id, type, publicId) || |
697
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1704 expectedType != type) |
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1705 { |
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1706 throw OrthancException(ErrorCode_UnknownResource); |
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1707 } |
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1708 |
1247 | 1709 db_.ListAvailableAttachments(target, id); |
697
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1710 } |
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1711 |
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1712 |
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1713 bool ServerIndex::LookupParent(std::string& target, |
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1714 const std::string& publicId) |
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1715 { |
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1716 boost::mutex::scoped_lock lock(mutex_); |
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1717 |
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1718 ResourceType type; |
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1719 int64_t id; |
1294 | 1720 if (!db_.LookupResource(id, type, publicId)) |
306
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1721 { |
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1722 throw OrthancException(ErrorCode_UnknownResource); |
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1723 } |
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1724 |
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1725 int64_t parentId; |
1247 | 1726 if (db_.LookupParent(parentId, id)) |
306
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1727 { |
1247 | 1728 target = db_.GetPublicId(parentId); |
306
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1729 return true; |
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1730 } |
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1731 else |
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1732 { |
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1733 return false; |
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1734 } |
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1735 } |
310 | 1736 |
1737 | |
1738 uint64_t ServerIndex::IncrementGlobalSequence(GlobalProperty sequence) | |
1739 { | |
1740 boost::mutex::scoped_lock lock(mutex_); | |
1310
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1741 Transaction transaction(*this); |
311 | 1742 |
1237 | 1743 uint64_t seq = IncrementGlobalSequenceInternal(sequence); |
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1744 transaction.Commit(0); |
311 | 1745 |
1746 return seq; | |
310 | 1747 } |
315 | 1748 |
1749 | |
1750 | |
1751 void ServerIndex::LogChange(ChangeType changeType, | |
1752 const std::string& publicId) | |
1753 { | |
1754 boost::mutex::scoped_lock lock(mutex_); | |
1310
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1755 Transaction transaction(*this); |
315 | 1756 |
1757 int64_t id; | |
1758 ResourceType type; | |
1294 | 1759 if (!db_.LookupResource(id, type, publicId)) |
315 | 1760 { |
1761 throw OrthancException(ErrorCode_UnknownResource); | |
1762 } | |
1763 | |
1237 | 1764 LogChange(id, changeType, type, publicId); |
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1765 transaction.Commit(0); |
315 | 1766 } |
413
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1767 |
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1768 |
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1769 void ServerIndex::DeleteChanges() |
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|
1770 { |
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|
1771 boost::mutex::scoped_lock lock(mutex_); |
1286 | 1772 db_.ClearChanges(); |
413
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1773 } |
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1774 |
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1775 void ServerIndex::DeleteExportedResources() |
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1776 { |
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1777 boost::mutex::scoped_lock lock(mutex_); |
1286 | 1778 db_.ClearExportedResources(); |
413
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1779 } |
440
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1780 |
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1781 |
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1782 void ServerIndex::GetStatisticsInternal(/* out */ uint64_t& diskSize, |
646 | 1783 /* out */ uint64_t& uncompressedSize, |
1784 /* out */ unsigned int& countStudies, | |
1785 /* out */ unsigned int& countSeries, | |
1786 /* out */ unsigned int& countInstances, | |
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1787 /* out */ uint64_t& dicomDiskSize, |
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1788 /* out */ uint64_t& dicomUncompressedSize, |
646 | 1789 /* in */ int64_t id, |
1790 /* in */ ResourceType type) | |
440
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1791 { |
646 | 1792 std::stack<int64_t> toExplore; |
1793 toExplore.push(id); | |
440
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1794 |
646 | 1795 countInstances = 0; |
1796 countSeries = 0; | |
1797 countStudies = 0; | |
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1798 diskSize = 0; |
646 | 1799 uncompressedSize = 0; |
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1800 dicomDiskSize = 0; |
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1801 dicomUncompressedSize = 0; |
440
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1802 |
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1803 while (!toExplore.empty()) |
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1804 { |
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1805 // Get the internal ID of the current resource |
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1806 int64_t resource = toExplore.top(); |
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1807 toExplore.pop(); |
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1808 |
1247 | 1809 ResourceType thisType = db_.GetResourceType(resource); |
440
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1810 |
702
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1811 std::list<FileContentType> f; |
1247 | 1812 db_.ListAvailableAttachments(f, resource); |
702
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1813 |
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1814 for (std::list<FileContentType>::const_iterator |
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1815 it = f.begin(); it != f.end(); ++it) |
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1816 { |
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1817 FileInfo attachment; |
1247 | 1818 if (db_.LookupAttachment(attachment, resource, *it)) |
702
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1819 { |
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1820 if (attachment.GetContentType() == FileContentType_Dicom) |
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1821 { |
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1822 dicomDiskSize += attachment.GetCompressedSize(); |
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1823 dicomUncompressedSize += attachment.GetUncompressedSize(); |
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1824 } |
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1825 |
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1826 diskSize += attachment.GetCompressedSize(); |
702
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1827 uncompressedSize += attachment.GetUncompressedSize(); |
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1828 } |
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1829 } |
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1830 |
440
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1831 if (thisType == ResourceType_Instance) |
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1832 { |
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1833 countInstances++; |
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1834 } |
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1835 else |
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1836 { |
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1837 switch (thisType) |
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1838 { |
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1839 case ResourceType_Study: |
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1840 countStudies++; |
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1841 break; |
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1842 |
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1843 case ResourceType_Series: |
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1844 countSeries++; |
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1845 break; |
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1846 |
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1847 default: |
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1848 break; |
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1849 } |
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1850 |
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1851 // Tag all the children of this resource as to be explored |
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1852 std::list<int64_t> tmp; |
1247 | 1853 db_.GetChildrenInternalId(tmp, resource); |
440
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1854 for (std::list<int64_t>::const_iterator |
656 | 1855 it = tmp.begin(); it != tmp.end(); ++it) |
440
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|
1856 { |
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1857 toExplore.push(*it); |
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1858 } |
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1859 } |
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1860 } |
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1861 |
646 | 1862 if (countStudies == 0) |
1863 { | |
1864 countStudies = 1; | |
1865 } | |
1866 | |
1867 if (countSeries == 0) | |
1868 { | |
1869 countSeries = 1; | |
1870 } | |
1871 } | |
1872 | |
1873 | |
1874 | |
1875 void ServerIndex::GetStatistics(Json::Value& target, | |
1876 const std::string& publicId) | |
1877 { | |
1878 boost::mutex::scoped_lock lock(mutex_); | |
1879 | |
1880 ResourceType type; | |
1881 int64_t top; | |
1294 | 1882 if (!db_.LookupResource(top, type, publicId)) |
646 | 1883 { |
1884 throw OrthancException(ErrorCode_UnknownResource); | |
1885 } | |
1886 | |
1887 uint64_t uncompressedSize; | |
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1888 uint64_t diskSize; |
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1889 uint64_t dicomUncompressedSize; |
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1890 uint64_t dicomDiskSize; |
646 | 1891 unsigned int countStudies; |
1892 unsigned int countSeries; | |
1893 unsigned int countInstances; | |
2987
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1894 GetStatisticsInternal(diskSize, uncompressedSize, countStudies, |
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1895 countSeries, countInstances, dicomDiskSize, dicomUncompressedSize, top, type); |
646 | 1896 |
440
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1897 target = Json::objectValue; |
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1898 target["DiskSize"] = boost::lexical_cast<std::string>(diskSize); |
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1899 target["DiskSizeMB"] = static_cast<unsigned int>(diskSize / MEGA_BYTES); |
440
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1900 target["UncompressedSize"] = boost::lexical_cast<std::string>(uncompressedSize); |
1310
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diff
changeset
|
1901 target["UncompressedSizeMB"] = static_cast<unsigned int>(uncompressedSize / MEGA_BYTES); |
440
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1902 |
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1903 target["DicomDiskSize"] = boost::lexical_cast<std::string>(dicomDiskSize); |
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1904 target["DicomDiskSizeMB"] = static_cast<unsigned int>(dicomDiskSize / MEGA_BYTES); |
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1905 target["DicomUncompressedSize"] = boost::lexical_cast<std::string>(dicomUncompressedSize); |
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1906 target["DicomUncompressedSizeMB"] = static_cast<unsigned int>(dicomUncompressedSize / MEGA_BYTES); |
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1907 |
440
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|
1908 switch (type) |
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1909 { |
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1910 // Do NOT add "break" below this point! |
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|
1911 case ResourceType_Patient: |
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1912 target["CountStudies"] = countStudies; |
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1913 |
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1914 case ResourceType_Study: |
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1915 target["CountSeries"] = countSeries; |
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1916 |
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1917 case ResourceType_Series: |
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1918 target["CountInstances"] = countInstances; |
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1919 |
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1920 case ResourceType_Instance: |
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1921 default: |
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1922 break; |
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1923 } |
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1924 } |
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1925 |
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1926 |
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1927 void ServerIndex::GetStatistics(/* out */ uint64_t& diskSize, |
646 | 1928 /* out */ uint64_t& uncompressedSize, |
1929 /* out */ unsigned int& countStudies, | |
1930 /* out */ unsigned int& countSeries, | |
1931 /* out */ unsigned int& countInstances, | |
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1932 /* out */ uint64_t& dicomDiskSize, |
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1933 /* out */ uint64_t& dicomUncompressedSize, |
646 | 1934 const std::string& publicId) |
1935 { | |
1936 boost::mutex::scoped_lock lock(mutex_); | |
1937 | |
1938 ResourceType type; | |
1939 int64_t top; | |
1294 | 1940 if (!db_.LookupResource(top, type, publicId)) |
646 | 1941 { |
1942 throw OrthancException(ErrorCode_UnknownResource); | |
1943 } | |
1944 | |
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1945 GetStatisticsInternal(diskSize, uncompressedSize, countStudies, |
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1946 countSeries, countInstances, dicomDiskSize, |
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1947 dicomUncompressedSize, top, type); |
646 | 1948 } |
1949 | |
1950 | |
2665
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1951 void ServerIndex::UnstableResourcesMonitorThread(ServerIndex* that, |
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1952 unsigned int threadSleep) |
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1953 { |
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1954 int stableAge; |
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1955 |
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1956 { |
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1957 OrthancConfiguration::ReaderLock lock; |
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1958 stableAge = lock.GetConfiguration().GetUnsignedIntegerParameter("StableAge", 60); |
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1959 } |
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1960 |
511
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1961 if (stableAge <= 0) |
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1962 { |
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1963 stableAge = 60; |
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1964 } |
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1965 |
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1966 LOG(INFO) << "Starting the monitor for stable resources (stable age = " << stableAge << ")"; |
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1967 |
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1968 while (!that->done_) |
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1969 { |
2665
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1970 // Check for stable resources each few seconds |
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1971 boost::this_thread::sleep(boost::posix_time::milliseconds(threadSleep)); |
511
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1972 |
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1973 boost::mutex::scoped_lock lock(that->mutex_); |
513 | 1974 |
511
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1975 while (!that->unstableResources_.IsEmpty() && |
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1976 that->unstableResources_.GetOldestPayload().GetAge() > static_cast<unsigned int>(stableAge)) |
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1977 { |
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1978 // This DICOM resource has not received any new instance for |
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1979 // some time. It can be considered as stable. |
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1980 |
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1981 UnstableResourcePayload payload; |
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1982 int64_t id = that->unstableResources_.RemoveOldest(payload); |
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1983 |
513 | 1984 // Ensure that the resource is still existing before logging the change |
1247 | 1985 if (that->db_.IsExistingResource(id)) |
511
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1986 { |
1177
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1987 switch (payload.GetResourceType()) |
513 | 1988 { |
1177
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1989 case ResourceType_Patient: |
1237 | 1990 that->LogChange(id, ChangeType_StablePatient, ResourceType_Patient, payload.GetPublicId()); |
513 | 1991 break; |
511
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1992 |
1177
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1993 case ResourceType_Study: |
1237 | 1994 that->LogChange(id, ChangeType_StableStudy, ResourceType_Study, payload.GetPublicId()); |
513 | 1995 break; |
511
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1996 |
1177
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1997 case ResourceType_Series: |
1237 | 1998 that->LogChange(id, ChangeType_StableSeries, ResourceType_Series, payload.GetPublicId()); |
513 | 1999 break; |
2000 | |
2001 default: | |
2002 throw OrthancException(ErrorCode_InternalError); | |
2003 } | |
2004 | |
2005 //LOG(INFO) << "Stable resource: " << EnumerationToString(payload.type_) << " " << id; | |
511
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2006 } |
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2007 } |
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2008 } |
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2009 |
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2010 LOG(INFO) << "Closing the monitor thread for stable resources"; |
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2011 } |
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2012 |
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2013 |
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2014 void ServerIndex::MarkAsUnstable(int64_t id, |
1177
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2015 Orthanc::ResourceType type, |
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2016 const std::string& publicId) |
511
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2017 { |
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2018 // WARNING: Before calling this method, "mutex_" must be locked. |
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2019 |
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2020 assert(type == Orthanc::ResourceType_Patient || |
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2021 type == Orthanc::ResourceType_Study || |
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2022 type == Orthanc::ResourceType_Series); |
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2023 |
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2024 UnstableResourcePayload payload(type, publicId); |
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2025 unstableResources_.AddOrMakeMostRecent(id, payload); |
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2026 //LOG(INFO) << "Unstable resource: " << EnumerationToString(type) << " " << id; |
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2027 |
1237 | 2028 LogChange(id, ChangeType_NewChildInstance, type, publicId); |
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2029 } |
521 | 2030 |
2031 | |
2032 | |
1728
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2033 void ServerIndex::LookupIdentifierExact(std::list<std::string>& result, |
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2034 ResourceType level, |
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2035 const DicomTag& tag, |
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2036 const std::string& value) |
615 | 2037 { |
1727 | 2038 assert((level == ResourceType_Patient && tag == DICOM_TAG_PATIENT_ID) || |
2039 (level == ResourceType_Study && tag == DICOM_TAG_STUDY_INSTANCE_UID) || | |
2040 (level == ResourceType_Study && tag == DICOM_TAG_ACCESSION_NUMBER) || | |
2041 (level == ResourceType_Series && tag == DICOM_TAG_SERIES_INSTANCE_UID) || | |
2042 (level == ResourceType_Instance && tag == DICOM_TAG_SOP_INSTANCE_UID)); | |
1725 | 2043 |
615 | 2044 result.clear(); |
2045 | |
2046 boost::mutex::scoped_lock lock(mutex_); | |
2047 | |
1746 | 2048 LookupIdentifierQuery query(level); |
2049 query.AddConstraint(tag, IdentifierConstraintType_Equal, value); | |
2050 query.Apply(result, db_); | |
615 | 2051 } |
2052 | |
2053 | |
699
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2054 StoreStatus ServerIndex::AddAttachment(const FileInfo& attachment, |
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2055 const std::string& publicId) |
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2056 { |
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2057 boost::mutex::scoped_lock lock(mutex_); |
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2058 |
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2059 Transaction t(*this); |
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2060 |
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2061 ResourceType resourceType; |
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2062 int64_t resourceId; |
1294 | 2063 if (!db_.LookupResource(resourceId, resourceType, publicId)) |
699
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2064 { |
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2065 return StoreStatus_Failure; // Inexistent resource |
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2066 } |
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2067 |
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2068 // Remove possible previous attachment |
1247 | 2069 db_.DeleteAttachment(resourceId, attachment.GetContentType()); |
699
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2070 |
704
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2071 // Locate the patient of the target resource |
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2072 int64_t patientId = resourceId; |
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2073 for (;;) |
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2074 { |
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702
diff
changeset
|
2075 int64_t parent; |
1247 | 2076 if (db_.LookupParent(parent, patientId)) |
704
4789da60d655
recycling with custom attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
702
diff
changeset
|
2077 { |
4789da60d655
recycling with custom attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
702
diff
changeset
|
2078 // We have not reached the patient level yet |
4789da60d655
recycling with custom attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
702
diff
changeset
|
2079 patientId = parent; |
4789da60d655
recycling with custom attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
702
diff
changeset
|
2080 } |
4789da60d655
recycling with custom attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
702
diff
changeset
|
2081 else |
4789da60d655
recycling with custom attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
702
diff
changeset
|
2082 { |
4789da60d655
recycling with custom attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
702
diff
changeset
|
2083 // We have reached the patient level |
4789da60d655
recycling with custom attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
702
diff
changeset
|
2084 break; |
4789da60d655
recycling with custom attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
702
diff
changeset
|
2085 } |
4789da60d655
recycling with custom attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
702
diff
changeset
|
2086 } |
4789da60d655
recycling with custom attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
702
diff
changeset
|
2087 |
4789da60d655
recycling with custom attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
702
diff
changeset
|
2088 // Possibly apply the recycling mechanism while preserving this patient |
1247 | 2089 assert(db_.GetResourceType(patientId) == ResourceType_Patient); |
2090 Recycle(attachment.GetCompressedSize(), db_.GetPublicId(patientId)); | |
704
4789da60d655
recycling with custom attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
702
diff
changeset
|
2091 |
1247 | 2092 db_.AddAttachment(resourceId, attachment); |
699
2929e17f8447
add attachments to resources
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
697
diff
changeset
|
2093 |
1773
613df4362575
New UpdatedAttachment and UpdatedMetadata events in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1757
diff
changeset
|
2094 if (IsUserContentType(attachment.GetContentType())) |
613df4362575
New UpdatedAttachment and UpdatedMetadata events in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1757
diff
changeset
|
2095 { |
613df4362575
New UpdatedAttachment and UpdatedMetadata events in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1757
diff
changeset
|
2096 LogChange(resourceId, ChangeType_UpdatedAttachment, resourceType, publicId); |
613df4362575
New UpdatedAttachment and UpdatedMetadata events in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1757
diff
changeset
|
2097 } |
613df4362575
New UpdatedAttachment and UpdatedMetadata events in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1757
diff
changeset
|
2098 |
699
2929e17f8447
add attachments to resources
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
697
diff
changeset
|
2099 t.Commit(attachment.GetCompressedSize()); |
2929e17f8447
add attachments to resources
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
697
diff
changeset
|
2100 |
2929e17f8447
add attachments to resources
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
697
diff
changeset
|
2101 return StoreStatus_Success; |
2929e17f8447
add attachments to resources
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
697
diff
changeset
|
2102 } |
2929e17f8447
add attachments to resources
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
697
diff
changeset
|
2103 |
702
7592a48e97e4
delete custom attachment
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
701
diff
changeset
|
2104 |
7592a48e97e4
delete custom attachment
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
701
diff
changeset
|
2105 void ServerIndex::DeleteAttachment(const std::string& publicId, |
7592a48e97e4
delete custom attachment
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
701
diff
changeset
|
2106 FileContentType type) |
7592a48e97e4
delete custom attachment
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
701
diff
changeset
|
2107 { |
7592a48e97e4
delete custom attachment
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
701
diff
changeset
|
2108 boost::mutex::scoped_lock lock(mutex_); |
7592a48e97e4
delete custom attachment
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
701
diff
changeset
|
2109 Transaction t(*this); |
7592a48e97e4
delete custom attachment
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
701
diff
changeset
|
2110 |
7592a48e97e4
delete custom attachment
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
701
diff
changeset
|
2111 ResourceType rtype; |
7592a48e97e4
delete custom attachment
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
701
diff
changeset
|
2112 int64_t id; |
1294 | 2113 if (!db_.LookupResource(id, rtype, publicId)) |
702
7592a48e97e4
delete custom attachment
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
701
diff
changeset
|
2114 { |
7592a48e97e4
delete custom attachment
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
701
diff
changeset
|
2115 throw OrthancException(ErrorCode_UnknownResource); |
7592a48e97e4
delete custom attachment
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
701
diff
changeset
|
2116 } |
7592a48e97e4
delete custom attachment
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
701
diff
changeset
|
2117 |
1247 | 2118 db_.DeleteAttachment(id, type); |
702
7592a48e97e4
delete custom attachment
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
701
diff
changeset
|
2119 |
1773
613df4362575
New UpdatedAttachment and UpdatedMetadata events in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1757
diff
changeset
|
2120 if (IsUserContentType(type)) |
613df4362575
New UpdatedAttachment and UpdatedMetadata events in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1757
diff
changeset
|
2121 { |
613df4362575
New UpdatedAttachment and UpdatedMetadata events in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1757
diff
changeset
|
2122 LogChange(id, ChangeType_UpdatedAttachment, rtype, publicId); |
613df4362575
New UpdatedAttachment and UpdatedMetadata events in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1757
diff
changeset
|
2123 } |
613df4362575
New UpdatedAttachment and UpdatedMetadata events in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1757
diff
changeset
|
2124 |
702
7592a48e97e4
delete custom attachment
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
701
diff
changeset
|
2125 t.Commit(0); |
7592a48e97e4
delete custom attachment
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
701
diff
changeset
|
2126 } |
7592a48e97e4
delete custom attachment
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
701
diff
changeset
|
2127 |
7592a48e97e4
delete custom attachment
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
701
diff
changeset
|
2128 |
1002
b067017a8a5b
anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
831
diff
changeset
|
2129 bool ServerIndex::GetMetadata(Json::Value& target, |
b067017a8a5b
anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
831
diff
changeset
|
2130 const std::string& publicId) |
b067017a8a5b
anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
831
diff
changeset
|
2131 { |
b067017a8a5b
anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
831
diff
changeset
|
2132 boost::mutex::scoped_lock lock(mutex_); |
b067017a8a5b
anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
831
diff
changeset
|
2133 |
b067017a8a5b
anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
831
diff
changeset
|
2134 target = Json::objectValue; |
b067017a8a5b
anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
831
diff
changeset
|
2135 |
b067017a8a5b
anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
831
diff
changeset
|
2136 ResourceType type; |
b067017a8a5b
anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
831
diff
changeset
|
2137 int64_t id; |
1294 | 2138 if (!db_.LookupResource(id, type, publicId)) |
1002
b067017a8a5b
anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
831
diff
changeset
|
2139 { |
b067017a8a5b
anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
831
diff
changeset
|
2140 return false; |
b067017a8a5b
anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
831
diff
changeset
|
2141 } |
b067017a8a5b
anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
831
diff
changeset
|
2142 |
b067017a8a5b
anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
831
diff
changeset
|
2143 std::list<MetadataType> metadata; |
1247 | 2144 db_.ListAvailableMetadata(metadata, id); |
1002
b067017a8a5b
anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
831
diff
changeset
|
2145 |
b067017a8a5b
anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
831
diff
changeset
|
2146 for (std::list<MetadataType>::const_iterator |
1304 | 2147 it = metadata.begin(); it != metadata.end(); ++it) |
1002
b067017a8a5b
anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
831
diff
changeset
|
2148 { |
b067017a8a5b
anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
831
diff
changeset
|
2149 std::string key = EnumerationToString(*it); |
1238 | 2150 |
2151 std::string value; | |
1247 | 2152 if (!db_.LookupMetadata(value, id, *it)) |
1238 | 2153 { |
2154 value.clear(); | |
2155 } | |
2156 | |
1002
b067017a8a5b
anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
831
diff
changeset
|
2157 target[key] = value; |
b067017a8a5b
anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
831
diff
changeset
|
2158 } |
b067017a8a5b
anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
831
diff
changeset
|
2159 |
b067017a8a5b
anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
831
diff
changeset
|
2160 return true; |
b067017a8a5b
anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
831
diff
changeset
|
2161 } |
1218
efece308018e
report database version in /system
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1198
diff
changeset
|
2162 |
efece308018e
report database version in /system
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1198
diff
changeset
|
2163 |
1249
40725595aaf0
Plugins can get/set global properties to save their configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1247
diff
changeset
|
2164 void ServerIndex::SetGlobalProperty(GlobalProperty property, |
40725595aaf0
Plugins can get/set global properties to save their configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1247
diff
changeset
|
2165 const std::string& value) |
40725595aaf0
Plugins can get/set global properties to save their configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1247
diff
changeset
|
2166 { |
40725595aaf0
Plugins can get/set global properties to save their configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1247
diff
changeset
|
2167 boost::mutex::scoped_lock lock(mutex_); |
40725595aaf0
Plugins can get/set global properties to save their configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1247
diff
changeset
|
2168 db_.SetGlobalProperty(property, value); |
40725595aaf0
Plugins can get/set global properties to save their configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1247
diff
changeset
|
2169 } |
40725595aaf0
Plugins can get/set global properties to save their configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1247
diff
changeset
|
2170 |
40725595aaf0
Plugins can get/set global properties to save their configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1247
diff
changeset
|
2171 |
2668
d26dd081df97
saving jobs engine on exit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2665
diff
changeset
|
2172 bool ServerIndex::LookupGlobalProperty(std::string& value, |
d26dd081df97
saving jobs engine on exit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2665
diff
changeset
|
2173 GlobalProperty property) |
d26dd081df97
saving jobs engine on exit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2665
diff
changeset
|
2174 { |
d26dd081df97
saving jobs engine on exit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2665
diff
changeset
|
2175 boost::mutex::scoped_lock lock(mutex_); |
d26dd081df97
saving jobs engine on exit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2665
diff
changeset
|
2176 return db_.LookupGlobalProperty(value, property); |
d26dd081df97
saving jobs engine on exit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2665
diff
changeset
|
2177 } |
d26dd081df97
saving jobs engine on exit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2665
diff
changeset
|
2178 |
d26dd081df97
saving jobs engine on exit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2665
diff
changeset
|
2179 |
1218
efece308018e
report database version in /system
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1198
diff
changeset
|
2180 std::string ServerIndex::GetGlobalProperty(GlobalProperty property, |
efece308018e
report database version in /system
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1198
diff
changeset
|
2181 const std::string& defaultValue) |
efece308018e
report database version in /system
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1198
diff
changeset
|
2182 { |
1239 | 2183 std::string value; |
2668
d26dd081df97
saving jobs engine on exit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2665
diff
changeset
|
2184 |
d26dd081df97
saving jobs engine on exit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2665
diff
changeset
|
2185 if (LookupGlobalProperty(value, property)) |
1239 | 2186 { |
2187 return value; | |
2188 } | |
2189 else | |
2190 { | |
2191 return defaultValue; | |
2192 } | |
1218
efece308018e
report database version in /system
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1198
diff
changeset
|
2193 } |
efece308018e
report database version in /system
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1198
diff
changeset
|
2194 |
1352 | 2195 |
2196 bool ServerIndex::GetMainDicomTags(DicomMap& result, | |
2197 const std::string& publicId, | |
1677
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1676
diff
changeset
|
2198 ResourceType expectedType, |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1676
diff
changeset
|
2199 ResourceType levelOfInterest) |
1352 | 2200 { |
1677
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1676
diff
changeset
|
2201 // Yes, the following test could be shortened, but we wish to make it as clear as possible |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1676
diff
changeset
|
2202 if (!(expectedType == ResourceType_Patient && levelOfInterest == ResourceType_Patient) && |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1676
diff
changeset
|
2203 !(expectedType == ResourceType_Study && levelOfInterest == ResourceType_Patient) && |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1676
diff
changeset
|
2204 !(expectedType == ResourceType_Study && levelOfInterest == ResourceType_Study) && |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1676
diff
changeset
|
2205 !(expectedType == ResourceType_Series && levelOfInterest == ResourceType_Series) && |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1676
diff
changeset
|
2206 !(expectedType == ResourceType_Instance && levelOfInterest == ResourceType_Instance)) |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1676
diff
changeset
|
2207 { |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1676
diff
changeset
|
2208 throw OrthancException(ErrorCode_ParameterOutOfRange); |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1676
diff
changeset
|
2209 } |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1676
diff
changeset
|
2210 |
1352 | 2211 result.Clear(); |
2212 | |
2213 boost::mutex::scoped_lock lock(mutex_); | |
2214 | |
2215 // Lookup for the requested resource | |
2216 int64_t id; | |
2217 ResourceType type; | |
2218 if (!db_.LookupResource(id, type, publicId) || | |
2219 type != expectedType) | |
2220 { | |
2221 return false; | |
2222 } | |
1677
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1676
diff
changeset
|
2223 |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1676
diff
changeset
|
2224 if (type == ResourceType_Study) |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1676
diff
changeset
|
2225 { |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1676
diff
changeset
|
2226 DicomMap tmp; |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1676
diff
changeset
|
2227 db_.GetMainDicomTags(tmp, id); |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1676
diff
changeset
|
2228 |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1676
diff
changeset
|
2229 switch (levelOfInterest) |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1676
diff
changeset
|
2230 { |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1676
diff
changeset
|
2231 case ResourceType_Patient: |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1676
diff
changeset
|
2232 tmp.ExtractPatientInformation(result); |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1676
diff
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|
2233 return true; |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
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|
2234 |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1676
diff
changeset
|
2235 case ResourceType_Study: |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1676
diff
changeset
|
2236 tmp.ExtractStudyInformation(result); |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1676
diff
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|
2237 return true; |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1676
diff
changeset
|
2238 |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2239 default: |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1676
diff
changeset
|
2240 throw OrthancException(ErrorCode_InternalError); |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1676
diff
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|
2241 } |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1676
diff
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|
2242 } |
1352 | 2243 else |
2244 { | |
2245 db_.GetMainDicomTags(result, id); | |
2246 return true; | |
2247 } | |
2248 } | |
1555
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1509
diff
changeset
|
2249 |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
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1509
diff
changeset
|
2250 |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1509
diff
changeset
|
2251 bool ServerIndex::LookupResourceType(ResourceType& type, |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1509
diff
changeset
|
2252 const std::string& publicId) |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1509
diff
changeset
|
2253 { |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1509
diff
changeset
|
2254 boost::mutex::scoped_lock lock(mutex_); |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1509
diff
changeset
|
2255 |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1509
diff
changeset
|
2256 int64_t id; |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1509
diff
changeset
|
2257 return db_.LookupResource(id, type, publicId); |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1509
diff
changeset
|
2258 } |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1509
diff
changeset
|
2259 |
1668
de1413733c97
reconstructing main dicom tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1555
diff
changeset
|
2260 |
de1413733c97
reconstructing main dicom tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1555
diff
changeset
|
2261 unsigned int ServerIndex::GetDatabaseVersion() |
de1413733c97
reconstructing main dicom tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1555
diff
changeset
|
2262 { |
de1413733c97
reconstructing main dicom tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1555
diff
changeset
|
2263 boost::mutex::scoped_lock lock(mutex_); |
de1413733c97
reconstructing main dicom tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1555
diff
changeset
|
2264 return db_.GetDatabaseVersion(); |
de1413733c97
reconstructing main dicom tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1555
diff
changeset
|
2265 } |
1750
55d52567bebb
LookupResource implemented
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1747
diff
changeset
|
2266 |
55d52567bebb
LookupResource implemented
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1747
diff
changeset
|
2267 |
1753 | 2268 void ServerIndex::FindCandidates(std::vector<std::string>& resources, |
2269 std::vector<std::string>& instances, | |
1757
98abb8d7f905
ServerContext::Apply lookup
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1754
diff
changeset
|
2270 const ::Orthanc::LookupResource& lookup) |
1750
55d52567bebb
LookupResource implemented
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1747
diff
changeset
|
2271 { |
1753 | 2272 boost::mutex::scoped_lock lock(mutex_); |
2273 | |
2274 std::list<int64_t> tmp; | |
2275 lookup.FindCandidates(tmp, db_); | |
2276 | |
2277 resources.resize(tmp.size()); | |
2278 instances.resize(tmp.size()); | |
2279 | |
2280 size_t pos = 0; | |
2281 for (std::list<int64_t>::const_iterator | |
2282 it = tmp.begin(); it != tmp.end(); ++it, pos++) | |
2283 { | |
1754 | 2284 assert(db_.GetResourceType(*it) == lookup.GetLevel()); |
2285 | |
1753 | 2286 int64_t instance; |
2120 | 2287 if (!ServerToolbox::FindOneChildInstance(instance, db_, *it, lookup.GetLevel())) |
1753 | 2288 { |
2289 throw OrthancException(ErrorCode_InternalError); | |
2290 } | |
2291 | |
2292 resources[pos] = db_.GetPublicId(*it); | |
2293 instances[pos] = db_.GetPublicId(instance); | |
2294 } | |
1750
55d52567bebb
LookupResource implemented
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1747
diff
changeset
|
2295 } |
1898
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2296 |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2297 |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2298 bool ServerIndex::LookupParent(std::string& target, |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2299 const std::string& publicId, |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2300 ResourceType parentType) |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2301 { |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2302 boost::mutex::scoped_lock lock(mutex_); |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2303 |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2304 ResourceType type; |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2305 int64_t id; |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2306 if (!db_.LookupResource(id, type, publicId)) |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2307 { |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2308 throw OrthancException(ErrorCode_UnknownResource); |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2309 } |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2310 |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2311 while (type != parentType) |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2312 { |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2313 int64_t parentId; |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2314 |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2315 if (type == ResourceType_Patient || // Cannot further go up in hierarchy |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2316 !db_.LookupParent(parentId, id)) |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2317 { |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2318 return false; |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2319 } |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2320 |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2321 id = parentId; |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2322 type = GetParentResourceType(type); |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2323 } |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2324 |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2325 target = db_.GetPublicId(id); |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2326 return true; |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2327 } |
2209
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2328 |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2329 |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2330 void ServerIndex::ReconstructInstance(ParsedDicomFile& dicom) |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2331 { |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2332 DicomMap summary; |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2333 dicom.ExtractDicomSummary(summary); |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2334 |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2335 DicomInstanceHasher hasher(summary); |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2336 |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2337 boost::mutex::scoped_lock lock(mutex_); |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2338 |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2339 try |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2340 { |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2341 Transaction t(*this); |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2342 |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2343 int64_t patient = -1, study = -1, series = -1, instance = -1; |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2344 |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2345 ResourceType dummy; |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2346 if (!db_.LookupResource(patient, dummy, hasher.HashPatient()) || |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2347 !db_.LookupResource(study, dummy, hasher.HashStudy()) || |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2348 !db_.LookupResource(series, dummy, hasher.HashSeries()) || |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2349 !db_.LookupResource(instance, dummy, hasher.HashInstance()) || |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2350 patient == -1 || |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2351 study == -1 || |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2352 series == -1 || |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2353 instance == -1) |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2354 { |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2355 throw OrthancException(ErrorCode_InternalError); |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2356 } |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2357 |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2358 db_.ClearMainDicomTags(patient); |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2359 db_.ClearMainDicomTags(study); |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2360 db_.ClearMainDicomTags(series); |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2361 db_.ClearMainDicomTags(instance); |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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2362 |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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2363 ServerToolbox::StoreMainDicomTags(db_, patient, ResourceType_Patient, summary); |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
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2364 ServerToolbox::StoreMainDicomTags(db_, study, ResourceType_Study, summary); |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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2365 ServerToolbox::StoreMainDicomTags(db_, series, ResourceType_Series, summary); |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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2366 ServerToolbox::StoreMainDicomTags(db_, instance, ResourceType_Instance, summary); |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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2367 |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2368 { |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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2369 std::string s; |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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2370 if (dicom.LookupTransferSyntax(s)) |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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changeset
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2371 { |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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2372 db_.SetMetadata(instance, MetadataType_Instance_TransferSyntax, s); |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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changeset
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2373 } |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
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2374 } |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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2375 |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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2376 const DicomValue* value; |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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2377 if ((value = summary.TestAndGetValue(DICOM_TAG_SOP_CLASS_UID)) != NULL && |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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2378 !value->IsNull() && |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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2379 !value->IsBinary()) |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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2380 { |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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2381 db_.SetMetadata(instance, MetadataType_Instance_SopClassUid, value->GetContent()); |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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2382 } |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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2383 |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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2384 t.Commit(0); // No change in the DB size |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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2385 } |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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2386 catch (OrthancException& e) |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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2387 { |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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2388 LOG(ERROR) << "EXCEPTION [" << e.What() << "]"; |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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2389 } |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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2390 } |
0 | 2391 } |