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annotate OrthancServer/Resources/Samples/Python/DicomizeImage.py @ 5432:59e3b6f8c5be

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migration to UCLouvain servers
author Sebastien Jodogne <s.jodogne@gmail.com>
date Tue, 21 Nov 2023 18:16:31 +0100
parents c9e2c6d1cd62
children 48b8dae6dc77
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c9e2c6d1cd62 added two Python samples: DicomizeImage.py and MicroCTDicomization.py
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1 #!/usr/bin/python3
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2 # -*- coding: utf-8 -*-
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3
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4 # Orthanc - A Lightweight, RESTful DICOM Store
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5 # Copyright (C) 2012-2016 Sebastien Jodogne, Medical Physics
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6 # Department, University Hospital of Liege, Belgium
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7 # Copyright (C) 2017-2023 Osimis S.A., Belgium
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8 # Copyright (C) 2021-2023 Sebastien Jodogne, ICTEAM UCLouvain, Belgium
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9 #
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10 # This program is free software: you can redistribute it and/or
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11 # modify it under the terms of the GNU General Public License as
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12 # published by the Free Software Foundation, either version 3 of the
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13 # License, or (at your option) any later version.
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14 #
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15 # This program is distributed in the hope that it will be useful, but
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16 # WITHOUT ANY WARRANTY; without even the implied warranty of
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17 # MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
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18 # General Public License for more details.
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19 #
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20 # You should have received a copy of the GNU General Public License
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21 # along with this program. If not, see <http://www.gnu.org/licenses/>.
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22
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23
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24 #
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25 # This sample Python script illustrates how to DICOM-ize a JPEG image,
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26 # a PNG image, or a PDF file using the route "/tools/create-dicom" of
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27 # the REST API of Orthanc. Make sure to adapt the parameters of the
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28 # DICOM-ization below.
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29 #
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30 # The following command-line will install the required library:
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31 #
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32 # $ sudo pip3 install requests
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33 #
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34
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35 import base64
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36 import imghdr
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37 import json
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38 import os
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39 import requests
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40
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41
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42 ########################################
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43 ## Parameters for the DICOM-ization ##
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44 ########################################
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45
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46 PATH = os.path.join(os.getenv('HOME'), 'Downloads', 'Spy 11B.jpg')
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47
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48 URL = 'http://localhost:8042/'
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49 USERNAME = 'orthanc'
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50 PASSWORD = 'orthanc'
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51
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52 TAGS = {
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53 'ConversionType' : 'SI', # Scanned Image
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54 'InstanceNumber' : '1',
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55 'Laterality' : '',
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56 'Modality' : 'OT',
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57 'PatientOrientation' : '',
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58 'SOPClassUID' : '1.2.840.10008.5.1.4.1.1.7', # Secondary Capture Image Storage
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59 'SeriesNumber' : '1',
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60 }
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61
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62 if True:
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63 # Case 1: Attach the new DICOM image as a new series in an
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64 # existing study. In this case, "PARENT_STUDY" indicates the
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65 # Orthanc identifier of the parent study:
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66 # https://orthanc.uclouvain.be/book/faq/orthanc-ids.html
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67 PARENT_STUDY = '66c8e41e-ac3a9029-0b85e42a-8195ee0a-92c2e62e'
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68
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69 else:
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70 # Case 2: Create a new study
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71 PARENT_STUDY = None
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72 STUDY_TAGS = {
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73 'PatientID' : 'Test',
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74 'PatientName' : 'Hello^World',
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75 'PatientSex' : 'O',
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76
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77 'PatientBirthDate' : None,
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78 'StudyID' : 'Test',
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79 'ReferringPhysicianName' : None,
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80 'AccessionNumber' : None,
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81 }
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82
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83 TAGS.update(STUDY_TAGS)
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86
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87 ########################################
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88 ## Application of the DICOM-ization ##
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89 ########################################
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90
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91 if imghdr.what(PATH) == 'jpeg':
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92 mime = 'image/jpeg'
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93 elif imghdr.what(PATH) == 'png':
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94 mime = 'image/png'
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95 elif os.path.splitext(PATH) [1] == '.pdf':
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96 mime = 'application/pdf'
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97 else:
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98 raise Exception('The input image is neither JPEG, nor PNG, nor PDF')
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99
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100 with open(PATH, 'rb') as f:
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101 content = f.read()
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102
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103 data = 'data:%s;base64,%s' % (mime, base64.b64encode(content).decode('ascii'))
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105 arguments = {
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106 'Content': data,
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107 'Tags': TAGS,
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108 }
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109
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110 if PARENT_STUDY != None:
c9e2c6d1cd62 added two Python samples: DicomizeImage.py and MicroCTDicomization.py
Sebastien Jodogne <s.jodogne@gmail.com>
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111 arguments['Parent'] = PARENT_STUDY
c9e2c6d1cd62 added two Python samples: DicomizeImage.py and MicroCTDicomization.py
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112
c9e2c6d1cd62 added two Python samples: DicomizeImage.py and MicroCTDicomization.py
Sebastien Jodogne <s.jodogne@gmail.com>
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113 r = requests.post('%s/tools/create-dicom' % URL,
c9e2c6d1cd62 added two Python samples: DicomizeImage.py and MicroCTDicomization.py
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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114 json.dumps(arguments),
c9e2c6d1cd62 added two Python samples: DicomizeImage.py and MicroCTDicomization.py
Sebastien Jodogne <s.jodogne@gmail.com>
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115 auth = requests.auth.HTTPBasicAuth(USERNAME, PASSWORD))
c9e2c6d1cd62 added two Python samples: DicomizeImage.py and MicroCTDicomization.py
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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116 r.raise_for_status()