Mercurial > hg > orthanc
annotate OrthancServer/OrthancRestApi/OrthancRestAnonymizeModify.cpp @ 2246:596528620416
fix
author | Sebastien Jodogne <s.jodogne@gmail.com> |
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date | Wed, 04 Jan 2017 17:01:02 +0100 |
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1 /** |
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2 * Orthanc - A Lightweight, RESTful DICOM Store |
1900 | 3 * Copyright (C) 2012-2016 Sebastien Jodogne, Medical Physics |
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4 * Department, University Hospital of Liege, Belgium |
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5 * Copyright (C) 2017 Osimis, Belgium |
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6 * |
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7 * This program is free software: you can redistribute it and/or |
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8 * modify it under the terms of the GNU General Public License as |
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9 * published by the Free Software Foundation, either version 3 of the |
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10 * License, or (at your option) any later version. |
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11 * |
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12 * In addition, as a special exception, the copyright holders of this |
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13 * program give permission to link the code of its release with the |
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14 * OpenSSL project's "OpenSSL" library (or with modified versions of it |
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15 * that use the same license as the "OpenSSL" library), and distribute |
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16 * the linked executables. You must obey the GNU General Public License |
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17 * in all respects for all of the code used other than "OpenSSL". If you |
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18 * modify file(s) with this exception, you may extend this exception to |
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19 * your version of the file(s), but you are not obligated to do so. If |
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20 * you do not wish to do so, delete this exception statement from your |
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21 * version. If you delete this exception statement from all source files |
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22 * in the program, then also delete it here. |
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23 * |
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24 * This program is distributed in the hope that it will be useful, but |
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25 * WITHOUT ANY WARRANTY; without even the implied warranty of |
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26 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU |
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27 * General Public License for more details. |
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28 * |
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29 * You should have received a copy of the GNU General Public License |
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30 * along with this program. If not, see <http://www.gnu.org/licenses/>. |
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31 **/ |
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32 |
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33 |
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34 #include "../PrecompiledHeadersServer.h" |
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35 #include "OrthancRestApi.h" |
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36 |
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37 #include "../../Core/Logging.h" |
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39 #include "../ServerContext.h" |
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41 |
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42 #include <boost/lexical_cast.hpp> |
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43 #include <boost/algorithm/string/predicate.hpp> |
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44 |
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45 namespace Orthanc |
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46 { |
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47 // Modification of DICOM instances ------------------------------------------ |
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48 |
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49 enum TagOperation |
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50 { |
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51 TagOperation_Keep, |
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52 TagOperation_Remove |
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53 }; |
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54 |
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55 static void ParseListOfTags(DicomModification& target, |
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56 const Json::Value& query, |
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57 TagOperation operation) |
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58 { |
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59 if (!query.isArray()) |
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60 { |
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61 throw OrthancException(ErrorCode_BadRequest); |
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62 } |
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63 |
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64 for (Json::Value::ArrayIndex i = 0; i < query.size(); i++) |
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65 { |
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66 std::string name = query[i].asString(); |
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67 |
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68 DicomTag tag = FromDcmtkBridge::ParseTag(name); |
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69 |
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70 switch (operation) |
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71 { |
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72 case TagOperation_Keep: |
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73 target.Keep(tag); |
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74 VLOG(1) << "Keep: " << name << " " << tag << std::endl; |
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75 break; |
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76 |
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77 case TagOperation_Remove: |
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78 target.Remove(tag); |
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79 VLOG(1) << "Remove: " << name << " " << tag << std::endl; |
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80 break; |
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81 |
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82 default: |
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83 throw OrthancException(ErrorCode_InternalError); |
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84 } |
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85 } |
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86 } |
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87 |
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88 |
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89 static void ParseReplacements(DicomModification& target, |
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90 const Json::Value& replacements) |
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91 { |
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92 if (!replacements.isObject()) |
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93 { |
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94 throw OrthancException(ErrorCode_BadRequest); |
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95 } |
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96 |
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97 Json::Value::Members members = replacements.getMemberNames(); |
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98 for (size_t i = 0; i < members.size(); i++) |
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99 { |
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100 const std::string& name = members[i]; |
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101 const Json::Value& value = replacements[name]; |
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102 |
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103 DicomTag tag = FromDcmtkBridge::ParseTag(name); |
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104 target.Replace(tag, value); |
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105 |
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106 VLOG(1) << "Replace: " << name << " " << tag |
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107 << " == " << value.toStyledString() << std::endl; |
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108 } |
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109 } |
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110 |
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111 |
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112 static std::string GeneratePatientName(ServerContext& context) |
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113 { |
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114 uint64_t seq = context.GetIndex().IncrementGlobalSequence(GlobalProperty_AnonymizationSequence); |
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115 return "Anonymized" + boost::lexical_cast<std::string>(seq); |
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116 } |
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117 |
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118 |
1010 | 119 |
120 bool OrthancRestApi::ParseModifyRequest(DicomModification& target, | |
121 const Json::Value& request) | |
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122 { |
1010 | 123 if (request.isObject()) |
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124 { |
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125 if (request.isMember("RemovePrivateTags")) |
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126 { |
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127 target.SetRemovePrivateTags(true); |
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128 } |
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129 |
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130 if (request.isMember("Remove")) |
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131 { |
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132 ParseListOfTags(target, request["Remove"], TagOperation_Remove); |
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133 } |
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134 |
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135 if (request.isMember("Replace")) |
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136 { |
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137 ParseReplacements(target, request["Replace"]); |
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138 } |
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139 |
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140 // The "Keep" operation only makes sense for the tags |
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141 // StudyInstanceUID, SeriesInstanceUID and SOPInstanceUID. Avoid |
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142 // this feature as much as possible, as this breaks the DICOM |
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143 // model of the real world, except if you know exactly what |
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144 // you're doing! |
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145 if (request.isMember("Keep")) |
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146 { |
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147 ParseListOfTags(target, request["Keep"], TagOperation_Keep); |
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148 } |
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149 |
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150 return true; |
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151 } |
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152 else |
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153 { |
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154 return false; |
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155 } |
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156 } |
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157 |
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158 |
1010 | 159 static bool ParseModifyRequest(DicomModification& target, |
160 const RestApiPostCall& call) | |
161 { | |
162 // curl http://localhost:8042/series/95a6e2bf-9296e2cc-bf614e2f-22b391ee-16e010e0/modify -X POST -d '{"Replace":{"InstitutionName":"My own clinic"}}' | |
163 | |
164 Json::Value request; | |
165 if (call.ParseJsonRequest(request)) | |
166 { | |
167 return OrthancRestApi::ParseModifyRequest(target, request); | |
168 } | |
169 else | |
170 { | |
171 return false; | |
172 } | |
173 } | |
174 | |
175 | |
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176 static bool ParseAnonymizationRequest(DicomModification& target, |
974 | 177 RestApiPostCall& call) |
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178 { |
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179 // curl http://localhost:8042/instances/6e67da51-d119d6ae-c5667437-87b9a8a5-0f07c49f/anonymize -X POST -d '{"Replace":{"PatientName":"hello","0010-0020":"world"},"Keep":["StudyDescription", "SeriesDescription"],"KeepPrivateTags": null,"Remove":["Modality"]}' > Anonymized.dcm |
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180 |
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181 target.SetupAnonymization(); |
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182 std::string patientName = target.GetReplacementAsString(DICOM_TAG_PATIENT_NAME); |
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183 |
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184 Json::Value request; |
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185 if (call.ParseJsonRequest(request) && request.isObject()) |
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186 { |
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187 if (request.isMember("KeepPrivateTags")) |
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188 { |
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189 target.SetRemovePrivateTags(false); |
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190 } |
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191 |
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192 if (request.isMember("Remove")) |
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193 { |
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194 ParseListOfTags(target, request["Remove"], TagOperation_Remove); |
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195 } |
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196 |
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197 if (request.isMember("Replace")) |
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198 { |
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199 ParseReplacements(target, request["Replace"]); |
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200 } |
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201 |
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202 if (request.isMember("Keep")) |
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203 { |
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204 ParseListOfTags(target, request["Keep"], TagOperation_Keep); |
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205 } |
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206 |
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207 if (target.IsReplaced(DICOM_TAG_PATIENT_NAME) && |
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208 target.GetReplacement(DICOM_TAG_PATIENT_NAME) == patientName) |
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209 { |
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210 // Overwrite the random Patient's Name by one that is more |
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211 // user-friendly (provided none was specified by the user) |
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212 target.Replace(DICOM_TAG_PATIENT_NAME, GeneratePatientName(OrthancRestApi::GetContext(call)), true); |
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213 } |
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214 |
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215 return true; |
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216 } |
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217 else |
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218 { |
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219 return false; |
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220 } |
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221 } |
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222 |
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223 |
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224 static void AnonymizeOrModifyInstance(DicomModification& modification, |
974 | 225 RestApiPostCall& call) |
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226 { |
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227 std::string id = call.GetUriComponent("id", ""); |
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228 |
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229 ServerContext::DicomCacheLocker locker(OrthancRestApi::GetContext(call), id); |
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230 |
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231 std::auto_ptr<ParsedDicomFile> modified(locker.GetDicom().Clone()); |
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232 modification.Apply(*modified); |
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233 modified->Answer(call.GetOutput()); |
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234 } |
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235 |
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236 |
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237 static void AnonymizeOrModifyResource(DicomModification& modification, |
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238 MetadataType metadataType, |
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239 ChangeType changeType, |
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240 ResourceType resourceType, |
974 | 241 RestApiPostCall& call) |
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242 { |
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243 bool isFirst = true; |
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244 Json::Value result(Json::objectValue); |
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245 |
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246 ServerContext& context = OrthancRestApi::GetContext(call); |
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247 |
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248 typedef std::list<std::string> Instances; |
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249 Instances instances; |
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250 std::string id = call.GetUriComponent("id", ""); |
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251 context.GetIndex().GetChildInstances(instances, id); |
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252 |
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253 if (instances.empty()) |
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254 { |
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255 return; |
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256 } |
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257 |
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258 |
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259 /** |
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260 * Loop over all the instances of the resource. |
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261 **/ |
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262 |
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263 for (Instances::const_iterator it = instances.begin(); |
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264 it != instances.end(); ++it) |
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265 { |
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266 LOG(INFO) << "Modifying instance " << *it; |
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267 |
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268 std::auto_ptr<ServerContext::DicomCacheLocker> locker; |
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269 |
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270 try |
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271 { |
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272 locker.reset(new ServerContext::DicomCacheLocker(OrthancRestApi::GetContext(call), *it)); |
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273 } |
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274 catch (OrthancException&) |
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275 { |
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276 // This child instance has been removed in between |
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277 continue; |
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278 } |
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279 |
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280 |
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281 ParsedDicomFile& original = locker->GetDicom(); |
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282 DicomInstanceHasher originalHasher = original.GetHasher(); |
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283 |
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284 |
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285 /** |
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286 * Compute the resulting DICOM instance. |
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287 **/ |
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288 |
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289 std::auto_ptr<ParsedDicomFile> modified(original.Clone()); |
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290 modification.Apply(*modified); |
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291 |
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292 DicomInstanceToStore toStore; |
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293 toStore.SetRestOrigin(call); |
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294 toStore.SetParsedDicomFile(*modified); |
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295 |
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296 |
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297 /** |
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298 * Prepare the metadata information to associate with the |
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299 * resulting DICOM instance (AnonymizedFrom/ModifiedFrom). |
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300 **/ |
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301 |
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302 DicomInstanceHasher modifiedHasher = modified->GetHasher(); |
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303 |
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304 if (originalHasher.HashSeries() != modifiedHasher.HashSeries()) |
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305 { |
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306 toStore.AddMetadata(ResourceType_Series, metadataType, originalHasher.HashSeries()); |
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307 } |
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308 |
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309 if (originalHasher.HashStudy() != modifiedHasher.HashStudy()) |
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310 { |
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311 toStore.AddMetadata(ResourceType_Study, metadataType, originalHasher.HashStudy()); |
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312 } |
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313 |
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314 if (originalHasher.HashPatient() != modifiedHasher.HashPatient()) |
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315 { |
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316 toStore.AddMetadata(ResourceType_Patient, metadataType, originalHasher.HashPatient()); |
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317 } |
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318 |
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319 assert(*it == originalHasher.HashInstance()); |
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320 toStore.AddMetadata(ResourceType_Instance, metadataType, *it); |
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321 |
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322 |
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323 /** |
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324 * Store the resulting DICOM instance into the Orthanc store. |
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325 **/ |
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326 |
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327 std::string modifiedInstance; |
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328 if (context.Store(modifiedInstance, toStore) != StoreStatus_Success) |
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329 { |
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330 LOG(ERROR) << "Error while storing a modified instance " << *it; |
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331 throw OrthancException(ErrorCode_CannotStoreInstance); |
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332 } |
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333 |
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334 // Sanity checks in debug mode |
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335 assert(modifiedInstance == modifiedHasher.HashInstance()); |
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336 |
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337 |
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338 /** |
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339 * Compute the JSON object that is returned by the REST call. |
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340 **/ |
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341 |
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342 if (isFirst) |
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343 { |
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344 std::string newId; |
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345 |
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346 switch (resourceType) |
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347 { |
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348 case ResourceType_Series: |
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349 newId = modifiedHasher.HashSeries(); |
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350 break; |
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351 |
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352 case ResourceType_Study: |
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353 newId = modifiedHasher.HashStudy(); |
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354 break; |
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355 |
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356 case ResourceType_Patient: |
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357 newId = modifiedHasher.HashPatient(); |
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358 break; |
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359 |
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360 default: |
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361 throw OrthancException(ErrorCode_InternalError); |
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362 } |
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363 |
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364 result["Type"] = EnumerationToString(resourceType); |
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365 result["ID"] = newId; |
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366 result["Path"] = GetBasePath(resourceType, newId); |
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367 result["PatientID"] = modifiedHasher.HashPatient(); |
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368 isFirst = false; |
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369 } |
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370 } |
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371 |
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372 call.GetOutput().AnswerJson(result); |
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373 } |
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374 |
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375 |
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376 |
974 | 377 static void ModifyInstance(RestApiPostCall& call) |
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378 { |
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379 DicomModification modification; |
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380 modification.SetAllowManualIdentifiers(true); |
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381 |
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382 if (ParseModifyRequest(modification, call)) |
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Sebastien Jodogne <s.jodogne@gmail.com>
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383 { |
796
e7b1ca0f1e04
creation of dicom files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
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|
384 if (modification.IsReplaced(DICOM_TAG_PATIENT_ID)) |
e7b1ca0f1e04
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parents:
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diff
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385 { |
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parents:
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diff
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|
386 modification.SetLevel(ResourceType_Patient); |
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diff
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|
387 } |
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parents:
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diff
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|
388 else if (modification.IsReplaced(DICOM_TAG_STUDY_INSTANCE_UID)) |
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diff
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389 { |
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parents:
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diff
changeset
|
390 modification.SetLevel(ResourceType_Study); |
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diff
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|
391 } |
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parents:
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diff
changeset
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392 else if (modification.IsReplaced(DICOM_TAG_SERIES_INSTANCE_UID)) |
e7b1ca0f1e04
creation of dicom files
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parents:
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diff
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393 { |
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parents:
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diff
changeset
|
394 modification.SetLevel(ResourceType_Series); |
e7b1ca0f1e04
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parents:
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diff
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|
395 } |
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parents:
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diff
changeset
|
396 else |
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
795
diff
changeset
|
397 { |
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creation of dicom files
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parents:
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changeset
|
398 modification.SetLevel(ResourceType_Instance); |
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parents:
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diff
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399 } |
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parents:
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diff
changeset
|
400 |
787
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refactoring of anonymization/modification
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parents:
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diff
changeset
|
401 AnonymizeOrModifyInstance(modification, call); |
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refactoring of OrthancRestApi
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diff
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402 } |
5197fd35333c
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
403 } |
5197fd35333c
refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
404 |
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refactoring of OrthancRestApi
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parents:
diff
changeset
|
405 |
974 | 406 static void AnonymizeInstance(RestApiPostCall& call) |
751
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refactoring of OrthancRestApi
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parents:
diff
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407 { |
787
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refactoring of anonymization/modification
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parents:
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diff
changeset
|
408 DicomModification modification; |
1279
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More flexible /modify and /anonymize for single instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1160
diff
changeset
|
409 modification.SetAllowManualIdentifiers(true); |
751
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refactoring of OrthancRestApi
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parents:
diff
changeset
|
410 |
787
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refactoring of anonymization/modification
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parents:
782
diff
changeset
|
411 if (ParseAnonymizationRequest(modification, call)) |
751
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refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
412 { |
787
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refactoring of anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
782
diff
changeset
|
413 AnonymizeOrModifyInstance(modification, call); |
751
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diff
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414 } |
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parents:
diff
changeset
|
415 } |
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refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
416 |
5197fd35333c
refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
417 |
787
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refactoring of anonymization/modification
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parents:
782
diff
changeset
|
418 template <enum ChangeType changeType, |
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refactoring of anonymization/modification
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parents:
782
diff
changeset
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419 enum ResourceType resourceType> |
974 | 420 static void ModifyResource(RestApiPostCall& call) |
751
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421 { |
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refactoring of anonymization/modification
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diff
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|
422 DicomModification modification; |
751
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refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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423 |
787
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refactoring of anonymization/modification
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parents:
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diff
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|
424 if (ParseModifyRequest(modification, call)) |
751
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refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
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|
425 { |
796
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creation of dicom files
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diff
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|
426 modification.SetLevel(resourceType); |
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parents:
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diff
changeset
|
427 AnonymizeOrModifyResource(modification, MetadataType_ModifiedFrom, |
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refactoring of anonymization/modification
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diff
changeset
|
428 changeType, resourceType, call); |
751
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|
429 } |
5197fd35333c
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parents:
diff
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|
430 } |
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
431 |
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refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
432 |
787
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refactoring of anonymization/modification
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parents:
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diff
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|
433 template <enum ChangeType changeType, |
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parents:
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diff
changeset
|
434 enum ResourceType resourceType> |
974 | 435 static void AnonymizeResource(RestApiPostCall& call) |
751
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diff
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|
436 { |
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refactoring of anonymization/modification
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diff
changeset
|
437 DicomModification modification; |
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diff
changeset
|
438 |
787
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diff
changeset
|
439 if (ParseAnonymizationRequest(modification, call)) |
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diff
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|
440 { |
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parents:
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diff
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|
441 AnonymizeOrModifyResource(modification, MetadataType_AnonymizedFrom, |
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parents:
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diff
changeset
|
442 changeType, resourceType, call); |
751
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443 } |
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diff
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|
444 } |
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
445 |
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diff
changeset
|
446 |
1569 | 447 static void StoreCreatedInstance(std::string& id /* out */, |
1572
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More information about the origin request in OnStoredInstance() callbacks
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parents:
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diff
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448 RestApiPostCall& call, |
1564
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diff
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449 ParsedDicomFile& dicom) |
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450 { |
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|
451 DicomInstanceToStore toStore; |
1572
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More information about the origin request in OnStoredInstance() callbacks
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parents:
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diff
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|
452 toStore.SetRestOrigin(call); |
1564
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parents:
1562
diff
changeset
|
453 toStore.SetParsedDicomFile(dicom); |
1b7def486e62
creation of DICOM series
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parents:
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diff
changeset
|
454 |
1572
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More information about the origin request in OnStoredInstance() callbacks
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1570
diff
changeset
|
455 ServerContext& context = OrthancRestApi::GetContext(call); |
1564
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creation of DICOM series
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parents:
1562
diff
changeset
|
456 StoreStatus status = context.Store(id, toStore); |
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parents:
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diff
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|
457 |
1b7def486e62
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
458 if (status == StoreStatus_Failure) |
1b7def486e62
creation of DICOM series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
459 { |
1582
bd1889029cbb
encoding of exceptions
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1572
diff
changeset
|
460 throw OrthancException(ErrorCode_CannotStoreInstance); |
1564
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parents:
1562
diff
changeset
|
461 } |
1b7def486e62
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parents:
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diff
changeset
|
462 } |
1b7def486e62
creation of DICOM series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1562
diff
changeset
|
463 |
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parents:
1562
diff
changeset
|
464 |
1569 | 465 static void CreateDicomV1(ParsedDicomFile& dicom, |
1572
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More information about the origin request in OnStoredInstance() callbacks
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diff
changeset
|
466 RestApiPostCall& call, |
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Creation of DICOM files with encapsulated PDF
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diff
changeset
|
467 const Json::Value& request) |
796
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diff
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|
468 { |
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changeset
|
469 // curl http://localhost:8042/tools/create-dicom -X POST -d '{"PatientName":"Hello^World"}' |
800
ecedd89055db
generation of DICOM images from PNG files
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parents:
796
diff
changeset
|
470 // curl http://localhost:8042/tools/create-dicom -X POST -d '{"PatientName":"Hello^World","PixelData":"data:image/png;base64,iVBORw0KGgoAAAANSUhEUgAAABAAAAAQCAAAAAA6mKC9AAAACXBIWXMAAAsTAAALEwEAmpwYAAAAB3RJTUUH3gUGDDcB53FulQAAAElJREFUGNNtj0sSAEEEQ1+U+185s1CtmRkblQ9CZldsKHJDk6DLGLJa6chjh0ooQmpjXMM86zPwydGEj6Ed/UGykkEM8X+p3u8/8LcOJIWLGeMAAAAASUVORK5CYII="}' |
796
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creation of dicom files
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diff
changeset
|
471 |
1555
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Creation of DICOM files with encapsulated PDF
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changeset
|
472 assert(request.isObject()); |
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Creation of DICOM files with encapsulated PDF
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diff
changeset
|
473 LOG(WARNING) << "Using a deprecated call to /tools/create-dicom"; |
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Creation of DICOM files with encapsulated PDF
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parents:
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diff
changeset
|
474 |
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Creation of DICOM files with encapsulated PDF
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parents:
1486
diff
changeset
|
475 Json::Value::Members members = request.getMemberNames(); |
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Creation of DICOM files with encapsulated PDF
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changeset
|
476 for (size_t i = 0; i < members.size(); i++) |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
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diff
changeset
|
477 { |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
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diff
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|
478 const std::string& name = members[i]; |
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Creation of DICOM files with encapsulated PDF
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parents:
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479 if (request[name].type() != Json::stringValue) |
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Creation of DICOM files with encapsulated PDF
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parents:
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diff
changeset
|
480 { |
1582
bd1889029cbb
encoding of exceptions
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1572
diff
changeset
|
481 throw OrthancException(ErrorCode_CreateDicomNotString); |
1555
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Creation of DICOM files with encapsulated PDF
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changeset
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482 } |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
483 |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
484 std::string value = request[name].asString(); |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
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parents:
1486
diff
changeset
|
485 |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
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parents:
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diff
changeset
|
486 DicomTag tag = FromDcmtkBridge::ParseTag(name); |
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Creation of DICOM files with encapsulated PDF
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parents:
1486
diff
changeset
|
487 if (tag == DICOM_TAG_PIXEL_DATA) |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
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parents:
1486
diff
changeset
|
488 { |
1562 | 489 dicom.EmbedContent(value); |
1555
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Creation of DICOM files with encapsulated PDF
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diff
changeset
|
490 } |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
491 else |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
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parents:
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diff
changeset
|
492 { |
1982
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1934
diff
changeset
|
493 // This is V1, don't try and decode data URI scheme |
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1934
diff
changeset
|
494 dicom.ReplacePlainString(tag, value); |
1555
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
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parents:
1486
diff
changeset
|
495 } |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
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parents:
1486
diff
changeset
|
496 } |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
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1486
diff
changeset
|
497 } |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
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parents:
1486
diff
changeset
|
498 |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
499 |
1569 | 500 static void InjectTags(ParsedDicomFile& dicom, |
1641
4e56b5a206b7
Support of binary tags encoded using data URI scheme
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1640
diff
changeset
|
501 const Json::Value& tags, |
1689 | 502 bool decodeBinaryTags) |
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503 { |
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504 if (tags.type() != Json::objectValue) |
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505 { |
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506 throw OrthancException(ErrorCode_BadRequest); |
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507 } |
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508 |
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509 // Inject the user-specified tags |
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510 Json::Value::Members members = tags.getMemberNames(); |
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511 for (size_t i = 0; i < members.size(); i++) |
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512 { |
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513 const std::string& name = members[i]; |
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514 DicomTag tag = FromDcmtkBridge::ParseTag(name); |
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515 |
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516 if (tag != DICOM_TAG_SPECIFIC_CHARACTER_SET) |
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517 { |
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518 if (tag != DICOM_TAG_PATIENT_ID && |
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519 tag != DICOM_TAG_ACQUISITION_DATE && |
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520 tag != DICOM_TAG_ACQUISITION_TIME && |
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521 tag != DICOM_TAG_CONTENT_DATE && |
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522 tag != DICOM_TAG_CONTENT_TIME && |
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523 tag != DICOM_TAG_INSTANCE_CREATION_DATE && |
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524 tag != DICOM_TAG_INSTANCE_CREATION_TIME && |
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525 tag != DICOM_TAG_SERIES_DATE && |
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526 tag != DICOM_TAG_SERIES_TIME && |
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527 tag != DICOM_TAG_STUDY_DATE && |
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528 tag != DICOM_TAG_STUDY_TIME && |
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529 dicom.HasTag(tag)) |
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530 { |
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531 throw OrthancException(ErrorCode_CreateDicomOverrideTag); |
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532 } |
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533 |
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534 if (tag == DICOM_TAG_PIXEL_DATA) |
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535 { |
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536 throw OrthancException(ErrorCode_CreateDicomUseContent); |
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537 } |
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538 else |
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539 { |
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540 dicom.Replace(tag, tags[name], decodeBinaryTags, DicomReplaceMode_InsertIfAbsent); |
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541 } |
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542 } |
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543 } |
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544 } |
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545 |
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546 |
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547 static void CreateSeries(RestApiPostCall& call, |
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548 ParsedDicomFile& base /* in */, |
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549 const Json::Value& content, |
1689 | 550 bool decodeBinaryTags) |
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551 { |
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552 assert(content.isArray()); |
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553 assert(content.size() > 0); |
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554 ServerContext& context = OrthancRestApi::GetContext(call); |
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555 |
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556 base.ReplacePlainString(DICOM_TAG_IMAGES_IN_ACQUISITION, boost::lexical_cast<std::string>(content.size())); |
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557 base.ReplacePlainString(DICOM_TAG_NUMBER_OF_TEMPORAL_POSITIONS, "1"); |
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558 |
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559 std::string someInstance; |
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560 |
1566 | 561 try |
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562 { |
1569 | 563 for (Json::ArrayIndex i = 0; i < content.size(); i++) |
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564 { |
1566 | 565 std::auto_ptr<ParsedDicomFile> dicom(base.Clone()); |
566 const Json::Value* payload = NULL; | |
567 | |
568 if (content[i].type() == Json::stringValue) | |
569 { | |
570 payload = &content[i]; | |
571 } | |
572 else if (content[i].type() == Json::objectValue) | |
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573 { |
1566 | 574 if (!content[i].isMember("Content")) |
575 { | |
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576 throw OrthancException(ErrorCode_CreateDicomNoPayload); |
1566 | 577 } |
578 | |
579 payload = &content[i]["Content"]; | |
580 | |
1569 | 581 if (content[i].isMember("Tags")) |
1570 | 582 { |
1689 | 583 InjectTags(*dicom, content[i]["Tags"], decodeBinaryTags); |
1570 | 584 } |
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585 } |
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586 |
1566 | 587 if (payload == NULL || |
588 payload->type() != Json::stringValue) | |
589 { | |
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590 throw OrthancException(ErrorCode_CreateDicomUseDataUriScheme); |
1566 | 591 } |
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592 |
1566 | 593 dicom->EmbedContent(payload->asString()); |
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594 dicom->ReplacePlainString(DICOM_TAG_INSTANCE_NUMBER, boost::lexical_cast<std::string>(i + 1)); |
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595 dicom->ReplacePlainString(DICOM_TAG_IMAGE_INDEX, boost::lexical_cast<std::string>(i + 1)); |
1566 | 596 |
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More information about the origin request in OnStoredInstance() callbacks
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597 StoreCreatedInstance(someInstance, call, *dicom); |
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598 } |
1566 | 599 } |
1616 | 600 catch (OrthancException&) |
1566 | 601 { |
1569 | 602 // Error: Remove the newly-created series |
603 | |
604 std::string series; | |
605 if (context.GetIndex().LookupParent(series, someInstance)) | |
1570 | 606 { |
1569 | 607 Json::Value dummy; |
608 context.GetIndex().DeleteResource(dummy, series, ResourceType_Series); | |
1570 | 609 } |
1569 | 610 |
1616 | 611 throw; |
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612 } |
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613 |
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614 std::string series; |
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615 if (context.GetIndex().LookupParent(series, someInstance)) |
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616 { |
1569 | 617 OrthancRestApi::GetApi(call).AnswerStoredResource(call, series, ResourceType_Series, StoreStatus_Success); |
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618 } |
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619 } |
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620 |
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621 |
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622 static void CreateDicomV2(RestApiPostCall& call, |
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623 const Json::Value& request) |
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624 { |
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625 assert(request.isObject()); |
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626 ServerContext& context = OrthancRestApi::GetContext(call); |
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627 |
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628 if (!request.isMember("Tags") || |
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629 request["Tags"].type() != Json::objectValue) |
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630 { |
1569 | 631 throw OrthancException(ErrorCode_BadRequest); |
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632 } |
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633 |
1805
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c-find scu for modality worklists
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634 ParsedDicomFile dicom(true); |
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635 |
1557 | 636 { |
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637 Encoding encoding; |
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638 |
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639 if (request["Tags"].isMember("SpecificCharacterSet")) |
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640 { |
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641 const char* tmp = request["Tags"]["SpecificCharacterSet"].asCString(); |
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642 if (!GetDicomEncoding(encoding, tmp)) |
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643 { |
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644 LOG(ERROR) << "Unknown specific character set: " << std::string(tmp); |
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645 throw OrthancException(ErrorCode_ParameterOutOfRange); |
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646 } |
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647 } |
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648 else |
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649 { |
1934
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FromDcmtkBridge::FromJson
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diff
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|
650 encoding = Configuration::GetDefaultEncoding(); |
1565
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651 } |
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652 |
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add tags per instances in a series
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653 dicom.SetEncoding(encoding); |
1557 | 654 } |
655 | |
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Creation of DICOM files with encapsulated PDF
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656 ResourceType parentType = ResourceType_Instance; |
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Creation of DICOM files with encapsulated PDF
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657 |
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Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
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658 if (request.isMember("Parent")) |
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Creation of DICOM files with encapsulated PDF
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659 { |
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Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
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660 // Locate the parent tags |
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Creation of DICOM files with encapsulated PDF
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661 std::string parent = request["Parent"].asString(); |
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Creation of DICOM files with encapsulated PDF
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662 if (!context.GetIndex().LookupResourceType(parentType, parent)) |
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Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
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663 { |
1582
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encoding of exceptions
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664 throw OrthancException(ErrorCode_CreateDicomBadParent); |
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Creation of DICOM files with encapsulated PDF
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665 } |
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Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
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|
666 |
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Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
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667 if (parentType == ResourceType_Instance) |
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Creation of DICOM files with encapsulated PDF
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668 { |
1582
bd1889029cbb
encoding of exceptions
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669 throw OrthancException(ErrorCode_CreateDicomParentIsInstance); |
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Creation of DICOM files with encapsulated PDF
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parents:
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670 } |
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Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
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671 |
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Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
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672 // Select one existing child instance of the parent resource, to |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
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parents:
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673 // retrieve all its tags |
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Creation of DICOM files with encapsulated PDF
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674 Json::Value siblingTags; |
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Creation of DICOM files with encapsulated PDF
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675 |
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Creation of DICOM files with encapsulated PDF
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676 { |
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Creation of DICOM files with encapsulated PDF
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677 // Retrieve all the instances of the parent resource |
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Creation of DICOM files with encapsulated PDF
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678 std::list<std::string> siblingInstances; |
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Creation of DICOM files with encapsulated PDF
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679 context.GetIndex().GetChildInstances(siblingInstances, parent); |
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Creation of DICOM files with encapsulated PDF
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680 |
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Creation of DICOM files with encapsulated PDF
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parents:
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|
681 if (siblingInstances.empty()) |
1569 | 682 { |
683 // Error: No instance (should never happen) | |
684 throw OrthancException(ErrorCode_InternalError); | |
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Creation of DICOM files with encapsulated PDF
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685 } |
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Creation of DICOM files with encapsulated PDF
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686 |
2124 | 687 context.ReadDicomAsJson(siblingTags, siblingInstances.front()); |
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Creation of DICOM files with encapsulated PDF
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688 } |
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Creation of DICOM files with encapsulated PDF
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|
689 |
1565
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690 |
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691 // Choose the same encoding as the parent resource |
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692 { |
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693 static const char* SPECIFIC_CHARACTER_SET = "0008,0005"; |
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694 |
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695 if (siblingTags.isMember(SPECIFIC_CHARACTER_SET)) |
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696 { |
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697 Encoding encoding; |
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698 if (!siblingTags[SPECIFIC_CHARACTER_SET].isMember("Value") || |
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699 siblingTags[SPECIFIC_CHARACTER_SET]["Value"].type() != Json::stringValue || |
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700 !GetDicomEncoding(encoding, siblingTags[SPECIFIC_CHARACTER_SET]["Value"].asCString())) |
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|
701 { |
1582
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encoding of exceptions
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diff
changeset
|
702 throw OrthancException(ErrorCode_CreateDicomParentEncoding); |
1565
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diff
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703 } |
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|
704 |
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parents:
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|
705 dicom.SetEncoding(encoding); |
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add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
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|
706 } |
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
707 } |
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add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
708 |
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add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
709 |
1555
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
710 // Retrieve the tags for all the parent modules |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
711 typedef std::set<DicomTag> ModuleTags; |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
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|
712 ModuleTags moduleTags; |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
713 |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
714 ResourceType type = parentType; |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
715 for (;;) |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
716 { |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
717 DicomTag::AddTagsForModule(moduleTags, GetModule(type)); |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
718 |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
719 if (type == ResourceType_Patient) |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
720 { |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
721 break; // We're done |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
722 } |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
723 |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
724 // Go up |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
725 std::string tmp; |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
726 if (!context.GetIndex().LookupParent(tmp, parent)) |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
727 { |
1569 | 728 throw OrthancException(ErrorCode_InternalError); |
1555
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
729 } |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
730 |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
731 parent = tmp; |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
732 type = GetParentResourceType(type); |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
733 } |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
734 |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
735 for (ModuleTags::const_iterator it = moduleTags.begin(); |
1616 | 736 it != moduleTags.end(); ++it) |
1555
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
737 { |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
738 std::string t = it->Format(); |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
739 if (siblingTags.isMember(t)) |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
740 { |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
741 const Json::Value& tag = siblingTags[t]; |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
742 if (tag["Type"] == "Null") |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
743 { |
1982
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1934
diff
changeset
|
744 dicom.ReplacePlainString(*it, ""); |
1555
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
745 } |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
746 else if (tag["Type"] == "String") |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
747 { |
1557 | 748 std::string value = tag["Value"].asString(); |
1982
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1934
diff
changeset
|
749 dicom.ReplacePlainString(*it, Toolbox::ConvertFromUtf8(value, dicom.GetEncoding())); |
1555
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
750 } |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
751 } |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
752 } |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
753 } |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
754 |
1641
4e56b5a206b7
Support of binary tags encoded using data URI scheme
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1640
diff
changeset
|
755 |
1689 | 756 bool decodeBinaryTags = true; |
1641
4e56b5a206b7
Support of binary tags encoded using data URI scheme
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1640
diff
changeset
|
757 if (request.isMember("InterpretBinaryTags")) |
4e56b5a206b7
Support of binary tags encoded using data URI scheme
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1640
diff
changeset
|
758 { |
4e56b5a206b7
Support of binary tags encoded using data URI scheme
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1640
diff
changeset
|
759 const Json::Value& v = request["InterpretBinaryTags"]; |
4e56b5a206b7
Support of binary tags encoded using data URI scheme
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1640
diff
changeset
|
760 if (v.type() != Json::booleanValue) |
4e56b5a206b7
Support of binary tags encoded using data URI scheme
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1640
diff
changeset
|
761 { |
4e56b5a206b7
Support of binary tags encoded using data URI scheme
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1640
diff
changeset
|
762 throw OrthancException(ErrorCode_BadRequest); |
4e56b5a206b7
Support of binary tags encoded using data URI scheme
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1640
diff
changeset
|
763 } |
4e56b5a206b7
Support of binary tags encoded using data URI scheme
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1640
diff
changeset
|
764 |
1689 | 765 decodeBinaryTags = v.asBool(); |
1641
4e56b5a206b7
Support of binary tags encoded using data URI scheme
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1640
diff
changeset
|
766 } |
4e56b5a206b7
Support of binary tags encoded using data URI scheme
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1640
diff
changeset
|
767 |
1565
4b23310eb7e8
add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1564
diff
changeset
|
768 |
1555
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
769 // Inject time-related information |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
770 std::string date, time; |
2140 | 771 SystemToolbox::GetNowDicom(date, time); |
1982
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1934
diff
changeset
|
772 dicom.ReplacePlainString(DICOM_TAG_ACQUISITION_DATE, date); |
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1934
diff
changeset
|
773 dicom.ReplacePlainString(DICOM_TAG_ACQUISITION_TIME, time); |
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1934
diff
changeset
|
774 dicom.ReplacePlainString(DICOM_TAG_CONTENT_DATE, date); |
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1934
diff
changeset
|
775 dicom.ReplacePlainString(DICOM_TAG_CONTENT_TIME, time); |
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1934
diff
changeset
|
776 dicom.ReplacePlainString(DICOM_TAG_INSTANCE_CREATION_DATE, date); |
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1934
diff
changeset
|
777 dicom.ReplacePlainString(DICOM_TAG_INSTANCE_CREATION_TIME, time); |
1555
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
778 |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
779 if (parentType == ResourceType_Patient || |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
780 parentType == ResourceType_Study || |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
781 parentType == ResourceType_Instance /* no parent */) |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
782 { |
1982
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1934
diff
changeset
|
783 dicom.ReplacePlainString(DICOM_TAG_SERIES_DATE, date); |
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1934
diff
changeset
|
784 dicom.ReplacePlainString(DICOM_TAG_SERIES_TIME, time); |
1555
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
785 } |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
786 |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
787 if (parentType == ResourceType_Patient || |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
788 parentType == ResourceType_Instance /* no parent */) |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
789 { |
1982
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1934
diff
changeset
|
790 dicom.ReplacePlainString(DICOM_TAG_STUDY_DATE, date); |
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1934
diff
changeset
|
791 dicom.ReplacePlainString(DICOM_TAG_STUDY_TIME, time); |
1555
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
792 } |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
793 |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
794 |
1689 | 795 InjectTags(dicom, request["Tags"], decodeBinaryTags); |
1555
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
796 |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
797 |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
798 // Inject the content (either an image, or a PDF file) |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
799 if (request.isMember("Content")) |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
800 { |
1564
1b7def486e62
creation of DICOM series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1562
diff
changeset
|
801 const Json::Value& content = request["Content"]; |
1b7def486e62
creation of DICOM series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1562
diff
changeset
|
802 |
1b7def486e62
creation of DICOM series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1562
diff
changeset
|
803 if (content.type() == Json::stringValue) |
1b7def486e62
creation of DICOM series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1562
diff
changeset
|
804 { |
1b7def486e62
creation of DICOM series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1562
diff
changeset
|
805 dicom.EmbedContent(request["Content"].asString()); |
1b7def486e62
creation of DICOM series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1562
diff
changeset
|
806 |
1b7def486e62
creation of DICOM series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1562
diff
changeset
|
807 } |
1b7def486e62
creation of DICOM series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1562
diff
changeset
|
808 else if (content.type() == Json::arrayValue) |
1b7def486e62
creation of DICOM series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1562
diff
changeset
|
809 { |
1b7def486e62
creation of DICOM series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1562
diff
changeset
|
810 if (content.size() > 0) |
1b7def486e62
creation of DICOM series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1562
diff
changeset
|
811 { |
1565
4b23310eb7e8
add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1564
diff
changeset
|
812 // Let's create a series instead of a single instance |
1689 | 813 CreateSeries(call, dicom, content, decodeBinaryTags); |
1564
1b7def486e62
creation of DICOM series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1562
diff
changeset
|
814 return; |
1b7def486e62
creation of DICOM series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1562
diff
changeset
|
815 } |
1b7def486e62
creation of DICOM series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1562
diff
changeset
|
816 } |
1b7def486e62
creation of DICOM series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1562
diff
changeset
|
817 else |
1555
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
818 { |
1582
bd1889029cbb
encoding of exceptions
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1572
diff
changeset
|
819 throw OrthancException(ErrorCode_CreateDicomUseDataUriScheme); |
1555
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
820 } |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
821 } |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
822 |
1564
1b7def486e62
creation of DICOM series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1562
diff
changeset
|
823 std::string id; |
1572
904096e7367e
More information about the origin request in OnStoredInstance() callbacks
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1570
diff
changeset
|
824 StoreCreatedInstance(id, call, dicom); |
1569 | 825 OrthancRestApi::GetApi(call).AnswerStoredResource(call, id, ResourceType_Instance, StoreStatus_Success); |
1555
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
826 |
1564
1b7def486e62
creation of DICOM series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1562
diff
changeset
|
827 return; |
1555
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
828 } |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
829 |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
830 |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
831 static void CreateDicom(RestApiPostCall& call) |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
832 { |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
833 Json::Value request; |
1569 | 834 if (!call.ParseJsonRequest(request) || |
835 !request.isObject()) | |
1570 | 836 { |
837 throw OrthancException(ErrorCode_BadRequest); | |
838 } | |
1569 | 839 |
840 if (request.isMember("Tags")) | |
1570 | 841 { |
842 CreateDicomV2(call, request); | |
843 } | |
1569 | 844 else |
1570 | 845 { |
846 // Compatibility with Orthanc <= 0.9.3 | |
1805
f08978b1f45b
c-find scu for modality worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1699
diff
changeset
|
847 ParsedDicomFile dicom(true); |
1572
904096e7367e
More information about the origin request in OnStoredInstance() callbacks
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1570
diff
changeset
|
848 CreateDicomV1(dicom, call, request); |
1569 | 849 |
1570 | 850 std::string id; |
1572
904096e7367e
More information about the origin request in OnStoredInstance() callbacks
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1570
diff
changeset
|
851 StoreCreatedInstance(id, call, dicom); |
1570 | 852 OrthancRestApi::GetApi(call).AnswerStoredResource(call, id, ResourceType_Instance, StoreStatus_Success); |
853 } | |
796
e7b1ca0f1e04
creation of dicom files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
795
diff
changeset
|
854 } |
e7b1ca0f1e04
creation of dicom files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
795
diff
changeset
|
855 |
e7b1ca0f1e04
creation of dicom files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
795
diff
changeset
|
856 |
751
5197fd35333c
refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
857 void OrthancRestApi::RegisterAnonymizeModify() |
5197fd35333c
refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
858 { |
5197fd35333c
refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
859 Register("/instances/{id}/modify", ModifyInstance); |
787
ac18946afa74
refactoring of anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
782
diff
changeset
|
860 Register("/series/{id}/modify", ModifyResource<ChangeType_ModifiedSeries, ResourceType_Series>); |
ac18946afa74
refactoring of anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
782
diff
changeset
|
861 Register("/studies/{id}/modify", ModifyResource<ChangeType_ModifiedStudy, ResourceType_Study>); |
796
e7b1ca0f1e04
creation of dicom files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
795
diff
changeset
|
862 Register("/patients/{id}/modify", ModifyResource<ChangeType_ModifiedPatient, ResourceType_Patient>); |
751
5197fd35333c
refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
863 |
5197fd35333c
refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
864 Register("/instances/{id}/anonymize", AnonymizeInstance); |
787
ac18946afa74
refactoring of anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
782
diff
changeset
|
865 Register("/series/{id}/anonymize", AnonymizeResource<ChangeType_ModifiedSeries, ResourceType_Series>); |
ac18946afa74
refactoring of anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
782
diff
changeset
|
866 Register("/studies/{id}/anonymize", AnonymizeResource<ChangeType_ModifiedStudy, ResourceType_Study>); |
ac18946afa74
refactoring of anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
782
diff
changeset
|
867 Register("/patients/{id}/anonymize", AnonymizeResource<ChangeType_ModifiedPatient, ResourceType_Patient>); |
796
e7b1ca0f1e04
creation of dicom files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
795
diff
changeset
|
868 |
1120
009dce4ea2f6
/tools/create-dicom now accepts PatientID
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1010
diff
changeset
|
869 Register("/tools/create-dicom", CreateDicom); |
751
5197fd35333c
refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
870 } |
5197fd35333c
refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
871 } |