Mercurial > hg > orthanc

annotate OrthancServer/OrthancRestApi/OrthancRestAnonymizeModify.cpp @ 2246:596528620416

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fix
author Sebastien Jodogne <s.jodogne@gmail.com>
date Wed, 04 Jan 2017 17:01:02 +0100
parents a3a65de1840f
children b5c8c0590f7f
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1 /**
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2 * Orthanc - A Lightweight, RESTful DICOM Store
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3 * Copyright (C) 2012-2016 Sebastien Jodogne, Medical Physics
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4 * Department, University Hospital of Liege, Belgium
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5 * Copyright (C) 2017 Osimis, Belgium
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6 *
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7 * This program is free software: you can redistribute it and/or
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8 * modify it under the terms of the GNU General Public License as
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9 * published by the Free Software Foundation, either version 3 of the
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10 * License, or (at your option) any later version.
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11 *
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12 * In addition, as a special exception, the copyright holders of this
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13 * program give permission to link the code of its release with the
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14 * OpenSSL project's "OpenSSL" library (or with modified versions of it
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15 * that use the same license as the "OpenSSL" library), and distribute
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16 * the linked executables. You must obey the GNU General Public License
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17 * in all respects for all of the code used other than "OpenSSL". If you
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18 * modify file(s) with this exception, you may extend this exception to
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19 * your version of the file(s), but you are not obligated to do so. If
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20 * you do not wish to do so, delete this exception statement from your
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21 * version. If you delete this exception statement from all source files
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22 * in the program, then also delete it here.
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23 *
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24 * This program is distributed in the hope that it will be useful, but
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25 * WITHOUT ANY WARRANTY; without even the implied warranty of
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26 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
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27 * General Public License for more details.
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28 *
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29 * You should have received a copy of the GNU General Public License
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30 * along with this program. If not, see <http://www.gnu.org/licenses/>.
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31 **/
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32
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33
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34 #include "../PrecompiledHeadersServer.h"
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35 #include "OrthancRestApi.h"
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36
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37 #include "../../Core/Logging.h"
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38 #include "../FromDcmtkBridge.h"
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39 #include "../ServerContext.h"
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40 #include "../OrthancInitialization.h"
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41
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42 #include <boost/lexical_cast.hpp>
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43 #include <boost/algorithm/string/predicate.hpp>
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44
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45 namespace Orthanc
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46 {
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47 // Modification of DICOM instances ------------------------------------------
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48
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49 enum TagOperation
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50 {
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51 TagOperation_Keep,
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52 TagOperation_Remove
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53 };
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54
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55 static void ParseListOfTags(DicomModification& target,
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56 const Json::Value& query,
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57 TagOperation operation)
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58 {
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59 if (!query.isArray())
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60 {
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61 throw OrthancException(ErrorCode_BadRequest);
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62 }
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63
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64 for (Json::Value::ArrayIndex i = 0; i < query.size(); i++)
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65 {
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66 std::string name = query[i].asString();
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67
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68 DicomTag tag = FromDcmtkBridge::ParseTag(name);
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69
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70 switch (operation)
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71 {
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72 case TagOperation_Keep:
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73 target.Keep(tag);
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74 VLOG(1) << "Keep: " << name << " " << tag << std::endl;
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75 break;
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76
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77 case TagOperation_Remove:
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78 target.Remove(tag);
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79 VLOG(1) << "Remove: " << name << " " << tag << std::endl;
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80 break;
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81
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82 default:
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83 throw OrthancException(ErrorCode_InternalError);
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84 }
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85 }
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86 }
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87
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88
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89 static void ParseReplacements(DicomModification& target,
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90 const Json::Value& replacements)
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91 {
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92 if (!replacements.isObject())
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93 {
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94 throw OrthancException(ErrorCode_BadRequest);
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95 }
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96
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97 Json::Value::Members members = replacements.getMemberNames();
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98 for (size_t i = 0; i < members.size(); i++)
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99 {
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100 const std::string& name = members[i];
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101 const Json::Value& value = replacements[name];
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102
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103 DicomTag tag = FromDcmtkBridge::ParseTag(name);
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104 target.Replace(tag, value);
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105
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106 VLOG(1) << "Replace: " << name << " " << tag
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107 << " == " << value.toStyledString() << std::endl;
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108 }
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109 }
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110
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111
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112 static std::string GeneratePatientName(ServerContext& context)
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113 {
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114 uint64_t seq = context.GetIndex().IncrementGlobalSequence(GlobalProperty_AnonymizationSequence);
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115 return "Anonymized" + boost::lexical_cast<std::string>(seq);
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116 }
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117
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118
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119
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120 bool OrthancRestApi::ParseModifyRequest(DicomModification& target,
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121 const Json::Value& request)
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122 {
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123 if (request.isObject())
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124 {
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125 if (request.isMember("RemovePrivateTags"))
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126 {
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127 target.SetRemovePrivateTags(true);
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128 }
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129
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130 if (request.isMember("Remove"))
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131 {
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132 ParseListOfTags(target, request["Remove"], TagOperation_Remove);
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133 }
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134
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135 if (request.isMember("Replace"))
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136 {
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137 ParseReplacements(target, request["Replace"]);
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138 }
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139
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140 // The "Keep" operation only makes sense for the tags
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141 // StudyInstanceUID, SeriesInstanceUID and SOPInstanceUID. Avoid
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142 // this feature as much as possible, as this breaks the DICOM
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143 // model of the real world, except if you know exactly what
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144 // you're doing!
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145 if (request.isMember("Keep"))
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146 {
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147 ParseListOfTags(target, request["Keep"], TagOperation_Keep);
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148 }
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149
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150 return true;
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151 }
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152 else
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153 {
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154 return false;
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155 }
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156 }
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157
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158
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159 static bool ParseModifyRequest(DicomModification& target,
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160 const RestApiPostCall& call)
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161 {
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162 // curl http://localhost:8042/series/95a6e2bf-9296e2cc-bf614e2f-22b391ee-16e010e0/modify -X POST -d '{"Replace":{"InstitutionName":"My own clinic"}}'
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163
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164 Json::Value request;
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165 if (call.ParseJsonRequest(request))
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166 {
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167 return OrthancRestApi::ParseModifyRequest(target, request);
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168 }
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169 else
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170 {
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171 return false;
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172 }
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173 }
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174
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175
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176 static bool ParseAnonymizationRequest(DicomModification& target,
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177 RestApiPostCall& call)
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178 {
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179 // curl http://localhost:8042/instances/6e67da51-d119d6ae-c5667437-87b9a8a5-0f07c49f/anonymize -X POST -d '{"Replace":{"PatientName":"hello","0010-0020":"world"},"Keep":["StudyDescription", "SeriesDescription"],"KeepPrivateTags": null,"Remove":["Modality"]}' > Anonymized.dcm
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180
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181 target.SetupAnonymization();
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182 std::string patientName = target.GetReplacementAsString(DICOM_TAG_PATIENT_NAME);
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183
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184 Json::Value request;
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185 if (call.ParseJsonRequest(request) && request.isObject())
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186 {
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187 if (request.isMember("KeepPrivateTags"))
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188 {
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189 target.SetRemovePrivateTags(false);
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190 }
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191
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192 if (request.isMember("Remove"))
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193 {
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194 ParseListOfTags(target, request["Remove"], TagOperation_Remove);
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195 }
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196
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197 if (request.isMember("Replace"))
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198 {
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199 ParseReplacements(target, request["Replace"]);
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200 }
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201
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202 if (request.isMember("Keep"))
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203 {
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204 ParseListOfTags(target, request["Keep"], TagOperation_Keep);
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205 }
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206
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207 if (target.IsReplaced(DICOM_TAG_PATIENT_NAME) &&
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208 target.GetReplacement(DICOM_TAG_PATIENT_NAME) == patientName)
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209 {
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210 // Overwrite the random Patient's Name by one that is more
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211 // user-friendly (provided none was specified by the user)
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212 target.Replace(DICOM_TAG_PATIENT_NAME, GeneratePatientName(OrthancRestApi::GetContext(call)), true);
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213 }
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214
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215 return true;
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216 }
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217 else
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218 {
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219 return false;
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220 }
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221 }
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222
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223
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224 static void AnonymizeOrModifyInstance(DicomModification& modification,
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225 RestApiPostCall& call)
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226 {
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227 std::string id = call.GetUriComponent("id", "");
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228
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229 ServerContext::DicomCacheLocker locker(OrthancRestApi::GetContext(call), id);
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230
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231 std::auto_ptr<ParsedDicomFile> modified(locker.GetDicom().Clone());
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232 modification.Apply(*modified);
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233 modified->Answer(call.GetOutput());
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234 }
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235
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236
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237 static void AnonymizeOrModifyResource(DicomModification& modification,
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238 MetadataType metadataType,
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239 ChangeType changeType,
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240 ResourceType resourceType,
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241 RestApiPostCall& call)
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242 {
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243 bool isFirst = true;
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244 Json::Value result(Json::objectValue);
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245
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246 ServerContext& context = OrthancRestApi::GetContext(call);
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247
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248 typedef std::list<std::string> Instances;
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249 Instances instances;
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250 std::string id = call.GetUriComponent("id", "");
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251 context.GetIndex().GetChildInstances(instances, id);
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252
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diff changeset
253 if (instances.empty())
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254 {
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255 return;
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diff changeset
256 }
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257
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258
751
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259 /**
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260 * Loop over all the instances of the resource.
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261 **/
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262
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263 for (Instances::const_iterator it = instances.begin();
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264 it != instances.end(); ++it)
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265 {
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266 LOG(INFO) << "Modifying instance " << *it;
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267
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268 std::auto_ptr<ServerContext::DicomCacheLocker> locker;
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269
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270 try
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271 {
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272 locker.reset(new ServerContext::DicomCacheLocker(OrthancRestApi::GetContext(call), *it));
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273 }
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274 catch (OrthancException&)
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275 {
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276 // This child instance has been removed in between
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277 continue;
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278 }
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279
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280
778
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281 ParsedDicomFile& original = locker->GetDicom();
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282 DicomInstanceHasher originalHasher = original.GetHasher();
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283
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284
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285 /**
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286 * Compute the resulting DICOM instance.
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287 **/
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288
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289 std::auto_ptr<ParsedDicomFile> modified(original.Clone());
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290 modification.Apply(*modified);
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291
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292 DicomInstanceToStore toStore;
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293 toStore.SetRestOrigin(call);
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294 toStore.SetParsedDicomFile(*modified);
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295
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296
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297 /**
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298 * Prepare the metadata information to associate with the
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299 * resulting DICOM instance (AnonymizedFrom/ModifiedFrom).
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300 **/
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301
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302 DicomInstanceHasher modifiedHasher = modified->GetHasher();
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303
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304 if (originalHasher.HashSeries() != modifiedHasher.HashSeries())
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305 {
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306 toStore.AddMetadata(ResourceType_Series, metadataType, originalHasher.HashSeries());
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307 }
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308
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309 if (originalHasher.HashStudy() != modifiedHasher.HashStudy())
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310 {
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diff changeset
311 toStore.AddMetadata(ResourceType_Study, metadataType, originalHasher.HashStudy());
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312 }
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313
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diff changeset
314 if (originalHasher.HashPatient() != modifiedHasher.HashPatient())
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315 {
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316 toStore.AddMetadata(ResourceType_Patient, metadataType, originalHasher.HashPatient());
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317 }
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318
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319 assert(*it == originalHasher.HashInstance());
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320 toStore.AddMetadata(ResourceType_Instance, metadataType, *it);
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321
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322
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323 /**
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324 * Store the resulting DICOM instance into the Orthanc store.
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325 **/
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326
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327 std::string modifiedInstance;
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328 if (context.Store(modifiedInstance, toStore) != StoreStatus_Success)
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329 {
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330 LOG(ERROR) << "Error while storing a modified instance " << *it;
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331 throw OrthancException(ErrorCode_CannotStoreInstance);
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332 }
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333
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334 // Sanity checks in debug mode
751
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335 assert(modifiedInstance == modifiedHasher.HashInstance());
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336
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337
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338 /**
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339 * Compute the JSON object that is returned by the REST call.
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340 **/
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341
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342 if (isFirst)
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343 {
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344 std::string newId;
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345
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346 switch (resourceType)
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347 {
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348 case ResourceType_Series:
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349 newId = modifiedHasher.HashSeries();
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350 break;
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351
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diff changeset
352 case ResourceType_Study:
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353 newId = modifiedHasher.HashStudy();
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354 break;
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355
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356 case ResourceType_Patient:
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357 newId = modifiedHasher.HashPatient();
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358 break;
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parents:
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359
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diff changeset
360 default:
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361 throw OrthancException(ErrorCode_InternalError);
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diff changeset
362 }
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diff changeset
363
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diff changeset
364 result["Type"] = EnumerationToString(resourceType);
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diff changeset
365 result["ID"] = newId;
5197fd35333c refactoring of OrthancRestApi
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diff changeset
366 result["Path"] = GetBasePath(resourceType, newId);
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diff changeset
367 result["PatientID"] = modifiedHasher.HashPatient();
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diff changeset
368 isFirst = false;
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369 }
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diff changeset
370 }
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diff changeset
371
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diff changeset
372 call.GetOutput().AnswerJson(result);
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diff changeset
373 }
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diff changeset
374
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diff changeset
375
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diff changeset
376
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diff changeset
377 static void ModifyInstance(RestApiPostCall& call)
751
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378 {
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diff changeset
379 DicomModification modification;
1279
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diff changeset
380 modification.SetAllowManualIdentifiers(true);
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diff changeset
381
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diff changeset
382 if (ParseModifyRequest(modification, call))
751
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diff changeset
383 {
796
e7b1ca0f1e04 creation of dicom files
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diff changeset
384 if (modification.IsReplaced(DICOM_TAG_PATIENT_ID))
e7b1ca0f1e04 creation of dicom files
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diff changeset
385 {
e7b1ca0f1e04 creation of dicom files
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diff changeset
386 modification.SetLevel(ResourceType_Patient);
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diff changeset
387 }
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diff changeset
388 else if (modification.IsReplaced(DICOM_TAG_STUDY_INSTANCE_UID))
e7b1ca0f1e04 creation of dicom files
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diff changeset
389 {
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diff changeset
390 modification.SetLevel(ResourceType_Study);
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diff changeset
391 }
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diff changeset
392 else if (modification.IsReplaced(DICOM_TAG_SERIES_INSTANCE_UID))
e7b1ca0f1e04 creation of dicom files
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diff changeset
393 {
e7b1ca0f1e04 creation of dicom files
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diff changeset
394 modification.SetLevel(ResourceType_Series);
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diff changeset
395 }
e7b1ca0f1e04 creation of dicom files
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diff changeset
396 else
e7b1ca0f1e04 creation of dicom files
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diff changeset
397 {
e7b1ca0f1e04 creation of dicom files
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diff changeset
398 modification.SetLevel(ResourceType_Instance);
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diff changeset
399 }
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diff changeset
400
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diff changeset
401 AnonymizeOrModifyInstance(modification, call);
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diff changeset
402 }
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parents:
diff changeset
403 }
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parents:
diff changeset
404
5197fd35333c refactoring of OrthancRestApi
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parents:
diff changeset
405
974
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diff changeset
406 static void AnonymizeInstance(RestApiPostCall& call)
751
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diff changeset
407 {
787
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diff changeset
408 DicomModification modification;
1279
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parents: 1160
diff changeset
409 modification.SetAllowManualIdentifiers(true);
751
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parents:
diff changeset
410
787
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diff changeset
411 if (ParseAnonymizationRequest(modification, call))
751
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diff changeset
412 {
787
ac18946afa74 refactoring of anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 782
diff changeset
413 AnonymizeOrModifyInstance(modification, call);
751
5197fd35333c refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
414 }
5197fd35333c refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
415 }
5197fd35333c refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
416
5197fd35333c refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
417
787
ac18946afa74 refactoring of anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 782
diff changeset
418 template <enum ChangeType changeType,
ac18946afa74 refactoring of anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 782
diff changeset
419 enum ResourceType resourceType>
974
83622b0f544c refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 831
diff changeset
420 static void ModifyResource(RestApiPostCall& call)
751
5197fd35333c refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
421 {
787
ac18946afa74 refactoring of anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 782
diff changeset
422 DicomModification modification;
751
5197fd35333c refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
423
787
ac18946afa74 refactoring of anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 782
diff changeset
424 if (ParseModifyRequest(modification, call))
751
5197fd35333c refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
425 {
796
e7b1ca0f1e04 creation of dicom files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 795
diff changeset
426 modification.SetLevel(resourceType);
787
ac18946afa74 refactoring of anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 782
diff changeset
427 AnonymizeOrModifyResource(modification, MetadataType_ModifiedFrom,
ac18946afa74 refactoring of anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 782
diff changeset
428 changeType, resourceType, call);
751
5197fd35333c refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
429 }
5197fd35333c refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
430 }
5197fd35333c refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
431
5197fd35333c refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
432
787
ac18946afa74 refactoring of anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 782
diff changeset
433 template <enum ChangeType changeType,
ac18946afa74 refactoring of anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 782
diff changeset
434 enum ResourceType resourceType>
974
83622b0f544c refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 831
diff changeset
435 static void AnonymizeResource(RestApiPostCall& call)
751
5197fd35333c refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
436 {
787
ac18946afa74 refactoring of anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 782
diff changeset
437 DicomModification modification;
751
5197fd35333c refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
438
787
ac18946afa74 refactoring of anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 782
diff changeset
439 if (ParseAnonymizationRequest(modification, call))
751
5197fd35333c refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
440 {
787
ac18946afa74 refactoring of anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 782
diff changeset
441 AnonymizeOrModifyResource(modification, MetadataType_AnonymizedFrom,
ac18946afa74 refactoring of anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 782
diff changeset
442 changeType, resourceType, call);
751
5197fd35333c refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
443 }
5197fd35333c refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
444 }
5197fd35333c refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
445
5197fd35333c refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
446
1569
27774f6f84e4 improved error handling in http answers
jodogne
parents: 1566
diff changeset
447 static void StoreCreatedInstance(std::string& id /* out */,
1572
904096e7367e More information about the origin request in OnStoredInstance() callbacks
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1570
diff changeset
448 RestApiPostCall& call,
1564
1b7def486e62 creation of DICOM series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1562
diff changeset
449 ParsedDicomFile& dicom)
1b7def486e62 creation of DICOM series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1562
diff changeset
450 {
1b7def486e62 creation of DICOM series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1562
diff changeset
451 DicomInstanceToStore toStore;
1572
904096e7367e More information about the origin request in OnStoredInstance() callbacks
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1570
diff changeset
452 toStore.SetRestOrigin(call);
1564
1b7def486e62 creation of DICOM series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1562
diff changeset
453 toStore.SetParsedDicomFile(dicom);
1b7def486e62 creation of DICOM series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1562
diff changeset
454
1572
904096e7367e More information about the origin request in OnStoredInstance() callbacks
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1570
diff changeset
455 ServerContext& context = OrthancRestApi::GetContext(call);
1564
1b7def486e62 creation of DICOM series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1562
diff changeset
456 StoreStatus status = context.Store(id, toStore);
1b7def486e62 creation of DICOM series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1562
diff changeset
457
1b7def486e62 creation of DICOM series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1562
diff changeset
458 if (status == StoreStatus_Failure)
1b7def486e62 creation of DICOM series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1562
diff changeset
459 {
1582
bd1889029cbb encoding of exceptions
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1572
diff changeset
460 throw OrthancException(ErrorCode_CannotStoreInstance);
1564
1b7def486e62 creation of DICOM series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1562
diff changeset
461 }
1b7def486e62 creation of DICOM series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1562
diff changeset
462 }
1b7def486e62 creation of DICOM series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1562
diff changeset
463
1b7def486e62 creation of DICOM series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1562
diff changeset
464
1569
27774f6f84e4 improved error handling in http answers
jodogne
parents: 1566
diff changeset
465 static void CreateDicomV1(ParsedDicomFile& dicom,
1572
904096e7367e More information about the origin request in OnStoredInstance() callbacks
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1570
diff changeset
466 RestApiPostCall& call,
1555
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
467 const Json::Value& request)
796
e7b1ca0f1e04 creation of dicom files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 795
diff changeset
468 {
e7b1ca0f1e04 creation of dicom files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 795
diff changeset
469 // curl http://localhost:8042/tools/create-dicom -X POST -d '{"PatientName":"Hello^World"}'
800
ecedd89055db generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 796
diff changeset
470 // curl http://localhost:8042/tools/create-dicom -X POST -d '{"PatientName":"Hello^World","PixelData":"data:image/png;base64,iVBORw0KGgoAAAANSUhEUgAAABAAAAAQCAAAAAA6mKC9AAAACXBIWXMAAAsTAAALEwEAmpwYAAAAB3RJTUUH3gUGDDcB53FulQAAAElJREFUGNNtj0sSAEEEQ1+U+185s1CtmRkblQ9CZldsKHJDk6DLGLJa6chjh0ooQmpjXMM86zPwydGEj6Ed/UGykkEM8X+p3u8/8LcOJIWLGeMAAAAASUVORK5CYII="}'
796
e7b1ca0f1e04 creation of dicom files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 795
diff changeset
471
1555
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
472 assert(request.isObject());
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
473 LOG(WARNING) << "Using a deprecated call to /tools/create-dicom";
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
474
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
475 Json::Value::Members members = request.getMemberNames();
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
476 for (size_t i = 0; i < members.size(); i++)
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
477 {
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
478 const std::string& name = members[i];
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
479 if (request[name].type() != Json::stringValue)
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
480 {
1582
bd1889029cbb encoding of exceptions
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1572
diff changeset
481 throw OrthancException(ErrorCode_CreateDicomNotString);
1555
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
482 }
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
483
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
484 std::string value = request[name].asString();
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
485
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
486 DicomTag tag = FromDcmtkBridge::ParseTag(name);
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
487 if (tag == DICOM_TAG_PIXEL_DATA)
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
488 {
1562
2084b7c20478 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1558
diff changeset
489 dicom.EmbedContent(value);
1555
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
490 }
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
491 else
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
492 {
1982
b5d4f9c156ad Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1934
diff changeset
493 // This is V1, don't try and decode data URI scheme
b5d4f9c156ad Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1934
diff changeset
494 dicom.ReplacePlainString(tag, value);
1555
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
495 }
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
496 }
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
497 }
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
498
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
499
1569
27774f6f84e4 improved error handling in http answers
jodogne
parents: 1566
diff changeset
500 static void InjectTags(ParsedDicomFile& dicom,
1641
4e56b5a206b7 Support of binary tags encoded using data URI scheme
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1640
diff changeset
501 const Json::Value& tags,
1689
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1652
diff changeset
502 bool decodeBinaryTags)
1565
4b23310eb7e8 add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1564
diff changeset
503 {
4b23310eb7e8 add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1564
diff changeset
504 if (tags.type() != Json::objectValue)
4b23310eb7e8 add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1564
diff changeset
505 {
1582
bd1889029cbb encoding of exceptions
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1572
diff changeset
506 throw OrthancException(ErrorCode_BadRequest);
1565
4b23310eb7e8 add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1564
diff changeset
507 }
4b23310eb7e8 add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1564
diff changeset
508
4b23310eb7e8 add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1564
diff changeset
509 // Inject the user-specified tags
4b23310eb7e8 add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1564
diff changeset
510 Json::Value::Members members = tags.getMemberNames();
4b23310eb7e8 add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1564
diff changeset
511 for (size_t i = 0; i < members.size(); i++)
4b23310eb7e8 add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1564
diff changeset
512 {
4b23310eb7e8 add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1564
diff changeset
513 const std::string& name = members[i];
1641
4e56b5a206b7 Support of binary tags encoded using data URI scheme
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1640
diff changeset
514 DicomTag tag = FromDcmtkBridge::ParseTag(name);
1565
4b23310eb7e8 add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1564
diff changeset
515
4b23310eb7e8 add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1564
diff changeset
516 if (tag != DICOM_TAG_SPECIFIC_CHARACTER_SET)
4b23310eb7e8 add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1564
diff changeset
517 {
4b23310eb7e8 add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1564
diff changeset
518 if (tag != DICOM_TAG_PATIENT_ID &&
1640
48224db51ee7 allow override date/time when creating DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1616
diff changeset
519 tag != DICOM_TAG_ACQUISITION_DATE &&
48224db51ee7 allow override date/time when creating DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1616
diff changeset
520 tag != DICOM_TAG_ACQUISITION_TIME &&
48224db51ee7 allow override date/time when creating DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1616
diff changeset
521 tag != DICOM_TAG_CONTENT_DATE &&
48224db51ee7 allow override date/time when creating DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1616
diff changeset
522 tag != DICOM_TAG_CONTENT_TIME &&
48224db51ee7 allow override date/time when creating DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1616
diff changeset
523 tag != DICOM_TAG_INSTANCE_CREATION_DATE &&
48224db51ee7 allow override date/time when creating DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1616
diff changeset
524 tag != DICOM_TAG_INSTANCE_CREATION_TIME &&
48224db51ee7 allow override date/time when creating DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1616
diff changeset
525 tag != DICOM_TAG_SERIES_DATE &&
48224db51ee7 allow override date/time when creating DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1616
diff changeset
526 tag != DICOM_TAG_SERIES_TIME &&
48224db51ee7 allow override date/time when creating DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1616
diff changeset
527 tag != DICOM_TAG_STUDY_DATE &&
48224db51ee7 allow override date/time when creating DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1616
diff changeset
528 tag != DICOM_TAG_STUDY_TIME &&
1565
4b23310eb7e8 add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1564
diff changeset
529 dicom.HasTag(tag))
4b23310eb7e8 add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1564
diff changeset
530 {
1582
bd1889029cbb encoding of exceptions
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1572
diff changeset
531 throw OrthancException(ErrorCode_CreateDicomOverrideTag);
1565
4b23310eb7e8 add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1564
diff changeset
532 }
4b23310eb7e8 add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1564
diff changeset
533
4b23310eb7e8 add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1564
diff changeset
534 if (tag == DICOM_TAG_PIXEL_DATA)
4b23310eb7e8 add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1564
diff changeset
535 {
1582
bd1889029cbb encoding of exceptions
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1572
diff changeset
536 throw OrthancException(ErrorCode_CreateDicomUseContent);
1565
4b23310eb7e8 add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1564
diff changeset
537 }
4b23310eb7e8 add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1564
diff changeset
538 else
4b23310eb7e8 add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1564
diff changeset
539 {
1982
b5d4f9c156ad Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1934
diff changeset
540 dicom.Replace(tag, tags[name], decodeBinaryTags, DicomReplaceMode_InsertIfAbsent);
1565
4b23310eb7e8 add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1564
diff changeset
541 }
4b23310eb7e8 add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1564
diff changeset
542 }
4b23310eb7e8 add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1564
diff changeset
543 }
4b23310eb7e8 add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1564
diff changeset
544 }
4b23310eb7e8 add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1564
diff changeset
545
4b23310eb7e8 add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1564
diff changeset
546
1564
1b7def486e62 creation of DICOM series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1562
diff changeset
547 static void CreateSeries(RestApiPostCall& call,
1b7def486e62 creation of DICOM series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1562
diff changeset
548 ParsedDicomFile& base /* in */,
1641
4e56b5a206b7 Support of binary tags encoded using data URI scheme
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1640
diff changeset
549 const Json::Value& content,
1689
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1652
diff changeset
550 bool decodeBinaryTags)
1564
1b7def486e62 creation of DICOM series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1562
diff changeset
551 {
1b7def486e62 creation of DICOM series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1562
diff changeset
552 assert(content.isArray());
1b7def486e62 creation of DICOM series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1562
diff changeset
553 assert(content.size() > 0);
1b7def486e62 creation of DICOM series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1562
diff changeset
554 ServerContext& context = OrthancRestApi::GetContext(call);
1b7def486e62 creation of DICOM series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1562
diff changeset
555
1982
b5d4f9c156ad Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1934
diff changeset
556 base.ReplacePlainString(DICOM_TAG_IMAGES_IN_ACQUISITION, boost::lexical_cast<std::string>(content.size()));
b5d4f9c156ad Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1934
diff changeset
557 base.ReplacePlainString(DICOM_TAG_NUMBER_OF_TEMPORAL_POSITIONS, "1");
1564
1b7def486e62 creation of DICOM series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1562
diff changeset
558
1b7def486e62 creation of DICOM series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1562
diff changeset
559 std::string someInstance;
1b7def486e62 creation of DICOM series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1562
diff changeset
560
1566
3be6eb3757c8 error handling
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1565
diff changeset
561 try
1564
1b7def486e62 creation of DICOM series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1562
diff changeset
562 {
1569
27774f6f84e4 improved error handling in http answers
jodogne
parents: 1566
diff changeset
563 for (Json::ArrayIndex i = 0; i < content.size(); i++)
1565
4b23310eb7e8 add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1564
diff changeset
564 {
1566
3be6eb3757c8 error handling
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1565
diff changeset
565 std::auto_ptr<ParsedDicomFile> dicom(base.Clone());
3be6eb3757c8 error handling
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1565
diff changeset
566 const Json::Value* payload = NULL;
3be6eb3757c8 error handling
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1565
diff changeset
567
3be6eb3757c8 error handling
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1565
diff changeset
568 if (content[i].type() == Json::stringValue)
3be6eb3757c8 error handling
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1565
diff changeset
569 {
3be6eb3757c8 error handling
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1565
diff changeset
570 payload = &content[i];
3be6eb3757c8 error handling
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1565
diff changeset
571 }
3be6eb3757c8 error handling
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1565
diff changeset
572 else if (content[i].type() == Json::objectValue)
1565
4b23310eb7e8 add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1564
diff changeset
573 {
1566
3be6eb3757c8 error handling
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1565
diff changeset
574 if (!content[i].isMember("Content"))
3be6eb3757c8 error handling
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1565
diff changeset
575 {
1582
bd1889029cbb encoding of exceptions
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1572
diff changeset
576 throw OrthancException(ErrorCode_CreateDicomNoPayload);
1566
3be6eb3757c8 error handling
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1565
diff changeset
577 }
3be6eb3757c8 error handling
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1565
diff changeset
578
3be6eb3757c8 error handling
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1565
diff changeset
579 payload = &content[i]["Content"];
3be6eb3757c8 error handling
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1565
diff changeset
580
1569
27774f6f84e4 improved error handling in http answers
jodogne
parents: 1566
diff changeset
581 if (content[i].isMember("Tags"))
1570
2bd2c280f9b5 fix indentation
jodogne
parents: 1569
diff changeset
582 {
1689
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1652
diff changeset
583 InjectTags(*dicom, content[i]["Tags"], decodeBinaryTags);
1570
2bd2c280f9b5 fix indentation
jodogne
parents: 1569
diff changeset
584 }
1565
4b23310eb7e8 add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1564
diff changeset
585 }
4b23310eb7e8 add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1564
diff changeset
586
1566
3be6eb3757c8 error handling
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1565
diff changeset
587 if (payload == NULL ||
3be6eb3757c8 error handling
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1565
diff changeset
588 payload->type() != Json::stringValue)
3be6eb3757c8 error handling
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1565
diff changeset
589 {
1582
bd1889029cbb encoding of exceptions
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1572
diff changeset
590 throw OrthancException(ErrorCode_CreateDicomUseDataUriScheme);
1566
3be6eb3757c8 error handling
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1565
diff changeset
591 }
1565
4b23310eb7e8 add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1564
diff changeset
592
1566
3be6eb3757c8 error handling
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1565
diff changeset
593 dicom->EmbedContent(payload->asString());
1982
b5d4f9c156ad Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1934
diff changeset
594 dicom->ReplacePlainString(DICOM_TAG_INSTANCE_NUMBER, boost::lexical_cast<std::string>(i + 1));
b5d4f9c156ad Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1934
diff changeset
595 dicom->ReplacePlainString(DICOM_TAG_IMAGE_INDEX, boost::lexical_cast<std::string>(i + 1));
1566
3be6eb3757c8 error handling
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1565
diff changeset
596
1572
904096e7367e More information about the origin request in OnStoredInstance() callbacks
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1570
diff changeset
597 StoreCreatedInstance(someInstance, call, *dicom);
1565
4b23310eb7e8 add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1564
diff changeset
598 }
1566
3be6eb3757c8 error handling
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1565
diff changeset
599 }
1616
644c32c07306 cppcheck
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1582
diff changeset
600 catch (OrthancException&)
1566
3be6eb3757c8 error handling
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1565
diff changeset
601 {
1569
27774f6f84e4 improved error handling in http answers
jodogne
parents: 1566
diff changeset
602 // Error: Remove the newly-created series
27774f6f84e4 improved error handling in http answers
jodogne
parents: 1566
diff changeset
603
27774f6f84e4 improved error handling in http answers
jodogne
parents: 1566
diff changeset
604 std::string series;
27774f6f84e4 improved error handling in http answers
jodogne
parents: 1566
diff changeset
605 if (context.GetIndex().LookupParent(series, someInstance))
1570
2bd2c280f9b5 fix indentation
jodogne
parents: 1569
diff changeset
606 {
1569
27774f6f84e4 improved error handling in http answers
jodogne
parents: 1566
diff changeset
607 Json::Value dummy;
27774f6f84e4 improved error handling in http answers
jodogne
parents: 1566
diff changeset
608 context.GetIndex().DeleteResource(dummy, series, ResourceType_Series);
1570
2bd2c280f9b5 fix indentation
jodogne
parents: 1569
diff changeset
609 }
1569
27774f6f84e4 improved error handling in http answers
jodogne
parents: 1566
diff changeset
610
1616
644c32c07306 cppcheck
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1582
diff changeset
611 throw;
1564
1b7def486e62 creation of DICOM series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1562
diff changeset
612 }
1b7def486e62 creation of DICOM series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1562
diff changeset
613
1b7def486e62 creation of DICOM series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1562
diff changeset
614 std::string series;
1b7def486e62 creation of DICOM series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1562
diff changeset
615 if (context.GetIndex().LookupParent(series, someInstance))
1b7def486e62 creation of DICOM series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1562
diff changeset
616 {
1569
27774f6f84e4 improved error handling in http answers
jodogne
parents: 1566
diff changeset
617 OrthancRestApi::GetApi(call).AnswerStoredResource(call, series, ResourceType_Series, StoreStatus_Success);
1564
1b7def486e62 creation of DICOM series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1562
diff changeset
618 }
1b7def486e62 creation of DICOM series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1562
diff changeset
619 }
1b7def486e62 creation of DICOM series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1562
diff changeset
620
1b7def486e62 creation of DICOM series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1562
diff changeset
621
1b7def486e62 creation of DICOM series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1562
diff changeset
622 static void CreateDicomV2(RestApiPostCall& call,
1555
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
623 const Json::Value& request)
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
624 {
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
625 assert(request.isObject());
1564
1b7def486e62 creation of DICOM series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1562
diff changeset
626 ServerContext& context = OrthancRestApi::GetContext(call);
1555
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
627
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
628 if (!request.isMember("Tags") ||
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
629 request["Tags"].type() != Json::objectValue)
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
630 {
1569
27774f6f84e4 improved error handling in http answers
jodogne
parents: 1566
diff changeset
631 throw OrthancException(ErrorCode_BadRequest);
1555
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
632 }
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
633
1805
f08978b1f45b c-find scu for modality worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1699
diff changeset
634 ParsedDicomFile dicom(true);
1558
124de28b32ed fix encodings of newly created dicom files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1557
diff changeset
635
1557
ad1e127b4ed5 fix in encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1555
diff changeset
636 {
1565
4b23310eb7e8 add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1564
diff changeset
637 Encoding encoding;
4b23310eb7e8 add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1564
diff changeset
638
4b23310eb7e8 add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1564
diff changeset
639 if (request["Tags"].isMember("SpecificCharacterSet"))
1558
124de28b32ed fix encodings of newly created dicom files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1557
diff changeset
640 {
1565
4b23310eb7e8 add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1564
diff changeset
641 const char* tmp = request["Tags"]["SpecificCharacterSet"].asCString();
4b23310eb7e8 add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1564
diff changeset
642 if (!GetDicomEncoding(encoding, tmp))
4b23310eb7e8 add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1564
diff changeset
643 {
1582
bd1889029cbb encoding of exceptions
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1572
diff changeset
644 LOG(ERROR) << "Unknown specific character set: " << std::string(tmp);
bd1889029cbb encoding of exceptions
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1572
diff changeset
645 throw OrthancException(ErrorCode_ParameterOutOfRange);
1565
4b23310eb7e8 add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1564
diff changeset
646 }
1558
124de28b32ed fix encodings of newly created dicom files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1557
diff changeset
647 }
1565
4b23310eb7e8 add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1564
diff changeset
648 else
4b23310eb7e8 add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1564
diff changeset
649 {
1934
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1900
diff changeset
650 encoding = Configuration::GetDefaultEncoding();
1565
4b23310eb7e8 add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1564
diff changeset
651 }
4b23310eb7e8 add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1564
diff changeset
652
4b23310eb7e8 add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1564
diff changeset
653 dicom.SetEncoding(encoding);
1557
ad1e127b4ed5 fix in encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1555
diff changeset
654 }
ad1e127b4ed5 fix in encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1555
diff changeset
655
1555
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
656 ResourceType parentType = ResourceType_Instance;
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
657
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
658 if (request.isMember("Parent"))
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
659 {
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
660 // Locate the parent tags
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
661 std::string parent = request["Parent"].asString();
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
662 if (!context.GetIndex().LookupResourceType(parentType, parent))
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
663 {
1582
bd1889029cbb encoding of exceptions
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1572
diff changeset
664 throw OrthancException(ErrorCode_CreateDicomBadParent);
1555
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
665 }
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
666
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
667 if (parentType == ResourceType_Instance)
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
668 {
1582
bd1889029cbb encoding of exceptions
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1572
diff changeset
669 throw OrthancException(ErrorCode_CreateDicomParentIsInstance);
1555
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
670 }
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
671
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
672 // Select one existing child instance of the parent resource, to
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
673 // retrieve all its tags
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
674 Json::Value siblingTags;
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
675
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
676 {
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
677 // Retrieve all the instances of the parent resource
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
678 std::list<std::string> siblingInstances;
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
679 context.GetIndex().GetChildInstances(siblingInstances, parent);
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
680
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
681 if (siblingInstances.empty())
1569
27774f6f84e4 improved error handling in http answers
jodogne
parents: 1566
diff changeset
682 {
27774f6f84e4 improved error handling in http answers
jodogne
parents: 1566
diff changeset
683 // Error: No instance (should never happen)
27774f6f84e4 improved error handling in http answers
jodogne
parents: 1566
diff changeset
684 throw OrthancException(ErrorCode_InternalError);
1555
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
685 }
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
686
2124
2b1520efa282 cleaning up
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1982
diff changeset
687 context.ReadDicomAsJson(siblingTags, siblingInstances.front());
1555
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
688 }
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
689
1565
4b23310eb7e8 add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1564
diff changeset
690
4b23310eb7e8 add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1564
diff changeset
691 // Choose the same encoding as the parent resource
4b23310eb7e8 add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1564
diff changeset
692 {
4b23310eb7e8 add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1564
diff changeset
693 static const char* SPECIFIC_CHARACTER_SET = "0008,0005";
4b23310eb7e8 add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1564
diff changeset
694
4b23310eb7e8 add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1564
diff changeset
695 if (siblingTags.isMember(SPECIFIC_CHARACTER_SET))
4b23310eb7e8 add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1564
diff changeset
696 {
4b23310eb7e8 add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1564
diff changeset
697 Encoding encoding;
4b23310eb7e8 add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1564
diff changeset
698 if (!siblingTags[SPECIFIC_CHARACTER_SET].isMember("Value") ||
4b23310eb7e8 add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1564
diff changeset
699 siblingTags[SPECIFIC_CHARACTER_SET]["Value"].type() != Json::stringValue ||
4b23310eb7e8 add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1564
diff changeset
700 !GetDicomEncoding(encoding, siblingTags[SPECIFIC_CHARACTER_SET]["Value"].asCString()))
4b23310eb7e8 add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1564
diff changeset
701 {
1582
bd1889029cbb encoding of exceptions
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1572
diff changeset
702 throw OrthancException(ErrorCode_CreateDicomParentEncoding);
1565
4b23310eb7e8 add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1564
diff changeset
703 }
4b23310eb7e8 add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1564
diff changeset
704
4b23310eb7e8 add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1564
diff changeset
705 dicom.SetEncoding(encoding);
4b23310eb7e8 add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1564
diff changeset
706 }
4b23310eb7e8 add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1564
diff changeset
707 }
4b23310eb7e8 add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1564
diff changeset
708
4b23310eb7e8 add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1564
diff changeset
709
1555
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
710 // Retrieve the tags for all the parent modules
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
711 typedef std::set<DicomTag> ModuleTags;
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
712 ModuleTags moduleTags;
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
713
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
714 ResourceType type = parentType;
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
715 for (;;)
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
716 {
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
717 DicomTag::AddTagsForModule(moduleTags, GetModule(type));
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
718
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
719 if (type == ResourceType_Patient)
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
720 {
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
721 break; // We're done
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
722 }
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
723
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
724 // Go up
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
725 std::string tmp;
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
726 if (!context.GetIndex().LookupParent(tmp, parent))
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
727 {
1569
27774f6f84e4 improved error handling in http answers
jodogne
parents: 1566
diff changeset
728 throw OrthancException(ErrorCode_InternalError);
1555
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
729 }
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
730
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
731 parent = tmp;
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
732 type = GetParentResourceType(type);
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
733 }
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
734
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
735 for (ModuleTags::const_iterator it = moduleTags.begin();
1616
644c32c07306 cppcheck
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1582
diff changeset
736 it != moduleTags.end(); ++it)
1555
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
737 {
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
738 std::string t = it->Format();
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
739 if (siblingTags.isMember(t))
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
740 {
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
741 const Json::Value& tag = siblingTags[t];
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
742 if (tag["Type"] == "Null")
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
743 {
1982
b5d4f9c156ad Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1934
diff changeset
744 dicom.ReplacePlainString(*it, "");
1555
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
745 }
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
746 else if (tag["Type"] == "String")
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
747 {
1557
ad1e127b4ed5 fix in encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1555
diff changeset
748 std::string value = tag["Value"].asString();
1982
b5d4f9c156ad Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1934
diff changeset
749 dicom.ReplacePlainString(*it, Toolbox::ConvertFromUtf8(value, dicom.GetEncoding()));
1555
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
750 }
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
751 }
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
752 }
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
753 }
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
754
1641
4e56b5a206b7 Support of binary tags encoded using data URI scheme
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1640
diff changeset
755
1689
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1652
diff changeset
756 bool decodeBinaryTags = true;
1641
4e56b5a206b7 Support of binary tags encoded using data URI scheme
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1640
diff changeset
757 if (request.isMember("InterpretBinaryTags"))
4e56b5a206b7 Support of binary tags encoded using data URI scheme
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1640
diff changeset
758 {
4e56b5a206b7 Support of binary tags encoded using data URI scheme
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1640
diff changeset
759 const Json::Value& v = request["InterpretBinaryTags"];
4e56b5a206b7 Support of binary tags encoded using data URI scheme
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1640
diff changeset
760 if (v.type() != Json::booleanValue)
4e56b5a206b7 Support of binary tags encoded using data URI scheme
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1640
diff changeset
761 {
4e56b5a206b7 Support of binary tags encoded using data URI scheme
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1640
diff changeset
762 throw OrthancException(ErrorCode_BadRequest);
4e56b5a206b7 Support of binary tags encoded using data URI scheme
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1640
diff changeset
763 }
4e56b5a206b7 Support of binary tags encoded using data URI scheme
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1640
diff changeset
764
1689
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1652
diff changeset
765 decodeBinaryTags = v.asBool();
1641
4e56b5a206b7 Support of binary tags encoded using data URI scheme
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1640
diff changeset
766 }
4e56b5a206b7 Support of binary tags encoded using data URI scheme
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1640
diff changeset
767
1565
4b23310eb7e8 add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1564
diff changeset
768
1555
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
769 // Inject time-related information
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
770 std::string date, time;
2140
aa4b8895cd23 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2124
diff changeset
771 SystemToolbox::GetNowDicom(date, time);
1982
b5d4f9c156ad Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1934
diff changeset
772 dicom.ReplacePlainString(DICOM_TAG_ACQUISITION_DATE, date);
b5d4f9c156ad Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1934
diff changeset
773 dicom.ReplacePlainString(DICOM_TAG_ACQUISITION_TIME, time);
b5d4f9c156ad Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1934
diff changeset
774 dicom.ReplacePlainString(DICOM_TAG_CONTENT_DATE, date);
b5d4f9c156ad Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1934
diff changeset
775 dicom.ReplacePlainString(DICOM_TAG_CONTENT_TIME, time);
b5d4f9c156ad Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1934
diff changeset
776 dicom.ReplacePlainString(DICOM_TAG_INSTANCE_CREATION_DATE, date);
b5d4f9c156ad Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1934
diff changeset
777 dicom.ReplacePlainString(DICOM_TAG_INSTANCE_CREATION_TIME, time);
1555
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
778
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
779 if (parentType == ResourceType_Patient ||
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
780 parentType == ResourceType_Study ||
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
781 parentType == ResourceType_Instance /* no parent */)
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
782 {
1982
b5d4f9c156ad Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1934
diff changeset
783 dicom.ReplacePlainString(DICOM_TAG_SERIES_DATE, date);
b5d4f9c156ad Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1934
diff changeset
784 dicom.ReplacePlainString(DICOM_TAG_SERIES_TIME, time);
1555
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
785 }
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
786
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
787 if (parentType == ResourceType_Patient ||
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
788 parentType == ResourceType_Instance /* no parent */)
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
789 {
1982
b5d4f9c156ad Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1934
diff changeset
790 dicom.ReplacePlainString(DICOM_TAG_STUDY_DATE, date);
b5d4f9c156ad Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1934
diff changeset
791 dicom.ReplacePlainString(DICOM_TAG_STUDY_TIME, time);
1555
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
792 }
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
793
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
794
1689
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1652
diff changeset
795 InjectTags(dicom, request["Tags"], decodeBinaryTags);
1555
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
796
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
797
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
798 // Inject the content (either an image, or a PDF file)
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
799 if (request.isMember("Content"))
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
800 {
1564
1b7def486e62 creation of DICOM series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1562
diff changeset
801 const Json::Value& content = request["Content"];
1b7def486e62 creation of DICOM series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1562
diff changeset
802
1b7def486e62 creation of DICOM series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1562
diff changeset
803 if (content.type() == Json::stringValue)
1b7def486e62 creation of DICOM series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1562
diff changeset
804 {
1b7def486e62 creation of DICOM series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1562
diff changeset
805 dicom.EmbedContent(request["Content"].asString());
1b7def486e62 creation of DICOM series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1562
diff changeset
806
1b7def486e62 creation of DICOM series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1562
diff changeset
807 }
1b7def486e62 creation of DICOM series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1562
diff changeset
808 else if (content.type() == Json::arrayValue)
1b7def486e62 creation of DICOM series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1562
diff changeset
809 {
1b7def486e62 creation of DICOM series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1562
diff changeset
810 if (content.size() > 0)
1b7def486e62 creation of DICOM series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1562
diff changeset
811 {
1565
4b23310eb7e8 add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1564
diff changeset
812 // Let's create a series instead of a single instance
1689
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1652
diff changeset
813 CreateSeries(call, dicom, content, decodeBinaryTags);
1564
1b7def486e62 creation of DICOM series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1562
diff changeset
814 return;
1b7def486e62 creation of DICOM series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1562
diff changeset
815 }
1b7def486e62 creation of DICOM series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1562
diff changeset
816 }
1b7def486e62 creation of DICOM series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1562
diff changeset
817 else
1555
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
818 {
1582
bd1889029cbb encoding of exceptions
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1572
diff changeset
819 throw OrthancException(ErrorCode_CreateDicomUseDataUriScheme);
1555
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
820 }
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
821 }
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
822
1564
1b7def486e62 creation of DICOM series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1562
diff changeset
823 std::string id;
1572
904096e7367e More information about the origin request in OnStoredInstance() callbacks
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1570
diff changeset
824 StoreCreatedInstance(id, call, dicom);
1569
27774f6f84e4 improved error handling in http answers
jodogne
parents: 1566
diff changeset
825 OrthancRestApi::GetApi(call).AnswerStoredResource(call, id, ResourceType_Instance, StoreStatus_Success);
1555
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
826
1564
1b7def486e62 creation of DICOM series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1562
diff changeset
827 return;
1555
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
828 }
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
829
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
830
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
831 static void CreateDicom(RestApiPostCall& call)
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
832 {
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
833 Json::Value request;
1569
27774f6f84e4 improved error handling in http answers
jodogne
parents: 1566
diff changeset
834 if (!call.ParseJsonRequest(request) ||
27774f6f84e4 improved error handling in http answers
jodogne
parents: 1566
diff changeset
835 !request.isObject())
1570
2bd2c280f9b5 fix indentation
jodogne
parents: 1569
diff changeset
836 {
2bd2c280f9b5 fix indentation
jodogne
parents: 1569
diff changeset
837 throw OrthancException(ErrorCode_BadRequest);
2bd2c280f9b5 fix indentation
jodogne
parents: 1569
diff changeset
838 }
1569
27774f6f84e4 improved error handling in http answers
jodogne
parents: 1566
diff changeset
839
27774f6f84e4 improved error handling in http answers
jodogne
parents: 1566
diff changeset
840 if (request.isMember("Tags"))
1570
2bd2c280f9b5 fix indentation
jodogne
parents: 1569
diff changeset
841 {
2bd2c280f9b5 fix indentation
jodogne
parents: 1569
diff changeset
842 CreateDicomV2(call, request);
2bd2c280f9b5 fix indentation
jodogne
parents: 1569
diff changeset
843 }
1569
27774f6f84e4 improved error handling in http answers
jodogne
parents: 1566
diff changeset
844 else
1570
2bd2c280f9b5 fix indentation
jodogne
parents: 1569
diff changeset
845 {
2bd2c280f9b5 fix indentation
jodogne
parents: 1569
diff changeset
846 // Compatibility with Orthanc <= 0.9.3
1805
f08978b1f45b c-find scu for modality worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1699
diff changeset
847 ParsedDicomFile dicom(true);
1572
904096e7367e More information about the origin request in OnStoredInstance() callbacks
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1570
diff changeset
848 CreateDicomV1(dicom, call, request);
1569
27774f6f84e4 improved error handling in http answers
jodogne
parents: 1566
diff changeset
849
1570
2bd2c280f9b5 fix indentation
jodogne
parents: 1569
diff changeset
850 std::string id;
1572
904096e7367e More information about the origin request in OnStoredInstance() callbacks
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1570
diff changeset
851 StoreCreatedInstance(id, call, dicom);
1570
2bd2c280f9b5 fix indentation
jodogne
parents: 1569
diff changeset
852 OrthancRestApi::GetApi(call).AnswerStoredResource(call, id, ResourceType_Instance, StoreStatus_Success);
2bd2c280f9b5 fix indentation
jodogne
parents: 1569
diff changeset
853 }
796
e7b1ca0f1e04 creation of dicom files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 795
diff changeset
854 }
e7b1ca0f1e04 creation of dicom files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 795
diff changeset
855
e7b1ca0f1e04 creation of dicom files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 795
diff changeset
856
751
5197fd35333c refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
857 void OrthancRestApi::RegisterAnonymizeModify()
5197fd35333c refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
858 {
5197fd35333c refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
859 Register("/instances/{id}/modify", ModifyInstance);
787
ac18946afa74 refactoring of anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 782
diff changeset
860 Register("/series/{id}/modify", ModifyResource<ChangeType_ModifiedSeries, ResourceType_Series>);
ac18946afa74 refactoring of anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 782
diff changeset
861 Register("/studies/{id}/modify", ModifyResource<ChangeType_ModifiedStudy, ResourceType_Study>);
796
e7b1ca0f1e04 creation of dicom files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 795
diff changeset
862 Register("/patients/{id}/modify", ModifyResource<ChangeType_ModifiedPatient, ResourceType_Patient>);
751
5197fd35333c refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
863
5197fd35333c refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
864 Register("/instances/{id}/anonymize", AnonymizeInstance);
787
ac18946afa74 refactoring of anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 782
diff changeset
865 Register("/series/{id}/anonymize", AnonymizeResource<ChangeType_ModifiedSeries, ResourceType_Series>);
ac18946afa74 refactoring of anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 782
diff changeset
866 Register("/studies/{id}/anonymize", AnonymizeResource<ChangeType_ModifiedStudy, ResourceType_Study>);
ac18946afa74 refactoring of anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 782
diff changeset
867 Register("/patients/{id}/anonymize", AnonymizeResource<ChangeType_ModifiedPatient, ResourceType_Patient>);
796
e7b1ca0f1e04 creation of dicom files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 795
diff changeset
868
1120
009dce4ea2f6 /tools/create-dicom now accepts PatientID
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1010
diff changeset
869 Register("/tools/create-dicom", CreateDicom);
751
5197fd35333c refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
870 }
5197fd35333c refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
871 }