Mercurial > hg > orthanc
annotate OrthancServer/ServerIndex.cpp @ 2137:595cf22b3e7e
safety checks of macros
author | Sebastien Jodogne <s.jodogne@gmail.com> |
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date | Wed, 09 Nov 2016 15:07:50 +0100 |
parents | 2ecc95a239f7 |
children | aa4b8895cd23 |
rev | line source |
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0 | 1 /** |
62 | 2 * Orthanc - A Lightweight, RESTful DICOM Store |
1900 | 3 * Copyright (C) 2012-2016 Sebastien Jodogne, Medical Physics |
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4 * Department, University Hospital of Liege, Belgium |
0 | 5 * |
6 * This program is free software: you can redistribute it and/or | |
7 * modify it under the terms of the GNU General Public License as | |
8 * published by the Free Software Foundation, either version 3 of the | |
9 * License, or (at your option) any later version. | |
136 | 10 * |
11 * In addition, as a special exception, the copyright holders of this | |
12 * program give permission to link the code of its release with the | |
13 * OpenSSL project's "OpenSSL" library (or with modified versions of it | |
14 * that use the same license as the "OpenSSL" library), and distribute | |
15 * the linked executables. You must obey the GNU General Public License | |
16 * in all respects for all of the code used other than "OpenSSL". If you | |
17 * modify file(s) with this exception, you may extend this exception to | |
18 * your version of the file(s), but you are not obligated to do so. If | |
19 * you do not wish to do so, delete this exception statement from your | |
20 * version. If you delete this exception statement from all source files | |
21 * in the program, then also delete it here. | |
0 | 22 * |
23 * This program is distributed in the hope that it will be useful, but | |
24 * WITHOUT ANY WARRANTY; without even the implied warranty of | |
25 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU | |
26 * General Public License for more details. | |
27 * | |
28 * You should have received a copy of the GNU General Public License | |
29 * along with this program. If not, see <http://www.gnu.org/licenses/>. | |
30 **/ | |
31 | |
32 | |
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33 #include "PrecompiledHeadersServer.h" |
0 | 34 #include "ServerIndex.h" |
35 | |
6 | 36 #ifndef NOMINMAX |
2 | 37 #define NOMINMAX |
6 | 38 #endif |
39 | |
1198 | 40 #include "ServerIndexChange.h" |
8 | 41 #include "EmbeddedResources.h" |
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42 #include "OrthancInitialization.h" |
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43 #include "ServerToolbox.h" |
0 | 44 #include "../Core/Toolbox.h" |
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45 #include "../Core/Logging.h" |
0 | 46 #include "../Core/Uuid.h" |
47 #include "../Core/DicomFormat/DicomArray.h" | |
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48 |
0 | 49 #include "FromDcmtkBridge.h" |
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50 #include "ServerContext.h" |
1822 | 51 #include "DicomInstanceToStore.h" |
2122 | 52 #include "Search/LookupResource.h" |
0 | 53 |
54 #include <boost/lexical_cast.hpp> | |
55 #include <stdio.h> | |
56 | |
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57 static const uint64_t MEGA_BYTES = 1024 * 1024; |
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58 |
62 | 59 namespace Orthanc |
0 | 60 { |
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61 class ServerIndex::Listener : public IDatabaseListener |
0 | 62 { |
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63 private: |
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64 struct FileToRemove |
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65 { |
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66 private: |
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67 std::string uuid_; |
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68 FileContentType type_; |
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69 |
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70 public: |
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71 FileToRemove(const FileInfo& info) : uuid_(info.GetUuid()), |
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72 type_(info.GetContentType()) |
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73 { |
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74 } |
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75 |
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76 const std::string& GetUuid() const |
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77 { |
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78 return uuid_; |
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79 } |
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80 |
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81 FileContentType GetContentType() const |
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82 { |
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83 return type_; |
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84 } |
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85 }; |
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86 |
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87 ServerContext& context_; |
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88 bool hasRemainingLevel_; |
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89 ResourceType remainingType_; |
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90 std::string remainingPublicId_; |
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91 std::list<FileToRemove> pendingFilesToRemove_; |
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92 std::list<ServerIndexChange> pendingChanges_; |
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93 uint64_t sizeOfFilesToRemove_; |
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94 bool insideTransaction_; |
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95 |
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96 void Reset() |
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97 { |
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98 sizeOfFilesToRemove_ = 0; |
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99 hasRemainingLevel_ = false; |
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100 pendingFilesToRemove_.clear(); |
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101 pendingChanges_.clear(); |
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102 } |
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103 |
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104 public: |
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105 Listener(ServerContext& context) : context_(context), |
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106 insideTransaction_(false) |
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107 { |
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108 Reset(); |
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109 assert(ResourceType_Patient < ResourceType_Study && |
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110 ResourceType_Study < ResourceType_Series && |
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111 ResourceType_Series < ResourceType_Instance); |
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112 } |
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113 |
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114 void StartTransaction() |
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115 { |
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116 Reset(); |
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117 insideTransaction_ = true; |
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118 } |
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119 |
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120 void EndTransaction() |
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121 { |
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122 insideTransaction_ = false; |
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123 } |
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124 |
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125 uint64_t GetSizeOfFilesToRemove() |
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126 { |
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127 return sizeOfFilesToRemove_; |
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128 } |
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129 |
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130 void CommitFilesToRemove() |
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131 { |
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132 for (std::list<FileToRemove>::const_iterator |
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133 it = pendingFilesToRemove_.begin(); |
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134 it != pendingFilesToRemove_.end(); ++it) |
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135 { |
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136 context_.RemoveFile(it->GetUuid(), it->GetContentType()); |
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137 } |
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138 } |
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139 |
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140 void CommitChanges() |
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141 { |
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142 for (std::list<ServerIndexChange>::const_iterator |
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143 it = pendingChanges_.begin(); |
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144 it != pendingChanges_.end(); ++it) |
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145 { |
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146 context_.SignalChange(*it); |
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147 } |
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148 } |
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149 |
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150 virtual void SignalRemainingAncestor(ResourceType parentType, |
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151 const std::string& publicId) |
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152 { |
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153 VLOG(1) << "Remaining ancestor \"" << publicId << "\" (" << parentType << ")"; |
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154 |
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155 if (hasRemainingLevel_) |
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156 { |
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157 if (parentType < remainingType_) |
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158 { |
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159 remainingType_ = parentType; |
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160 remainingPublicId_ = publicId; |
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161 } |
1158 | 162 } |
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163 else |
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164 { |
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165 hasRemainingLevel_ = true; |
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166 remainingType_ = parentType; |
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167 remainingPublicId_ = publicId; |
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168 } |
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169 } |
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170 |
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171 virtual void SignalFileDeleted(const FileInfo& info) |
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172 { |
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173 assert(Toolbox::IsUuid(info.GetUuid())); |
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174 pendingFilesToRemove_.push_back(FileToRemove(info)); |
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175 sizeOfFilesToRemove_ += info.GetCompressedSize(); |
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176 } |
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177 |
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178 virtual void SignalChange(const ServerIndexChange& change) |
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179 { |
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180 VLOG(1) << "Change related to resource " << change.GetPublicId() << " of type " |
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181 << EnumerationToString(change.GetResourceType()) << ": " |
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182 << EnumerationToString(change.GetChangeType()); |
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183 |
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184 if (insideTransaction_) |
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185 { |
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186 pendingChanges_.push_back(change); |
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187 } |
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188 else |
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189 { |
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190 context_.SignalChange(change); |
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191 } |
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192 } |
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193 |
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194 bool HasRemainingLevel() const |
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195 { |
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196 return hasRemainingLevel_; |
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197 } |
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198 |
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199 ResourceType GetRemainingType() const |
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200 { |
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201 assert(HasRemainingLevel()); |
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202 return remainingType_; |
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203 } |
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204 |
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205 const std::string& GetRemainingPublicId() const |
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206 { |
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207 assert(HasRemainingLevel()); |
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208 return remainingPublicId_; |
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209 } |
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210 }; |
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212 | |
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213 class ServerIndex::Transaction |
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214 { |
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215 private: |
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216 ServerIndex& index_; |
1235 | 217 std::auto_ptr<SQLite::ITransaction> transaction_; |
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218 bool isCommitted_; |
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219 |
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220 public: |
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221 Transaction(ServerIndex& index) : |
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222 index_(index), |
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223 isCommitted_(false) |
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224 { |
1247 | 225 transaction_.reset(index_.db_.StartTransaction()); |
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226 transaction_->Begin(); |
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227 |
1270 | 228 assert(index_.currentStorageSize_ == index_.db_.GetTotalCompressedSize()); |
229 | |
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230 index_.listener_->StartTransaction(); |
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231 } |
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232 |
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233 ~Transaction() |
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234 { |
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235 index_.listener_->EndTransaction(); |
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236 |
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237 if (!isCommitted_) |
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238 { |
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239 transaction_->Rollback(); |
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240 } |
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241 } |
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242 |
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243 void Commit(uint64_t sizeOfAddedFiles) |
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244 { |
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245 if (!isCommitted_) |
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246 { |
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247 transaction_->Commit(); |
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248 |
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249 // We can remove the files once the SQLite transaction has |
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250 // been successfully committed. Some files might have to be |
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251 // deleted because of recycling. |
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252 index_.listener_->CommitFilesToRemove(); |
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253 |
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254 index_.currentStorageSize_ += sizeOfAddedFiles; |
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255 |
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256 assert(index_.currentStorageSize_ >= index_.listener_->GetSizeOfFilesToRemove()); |
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257 index_.currentStorageSize_ -= index_.listener_->GetSizeOfFilesToRemove(); |
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258 |
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259 // Send all the pending changes to the Orthanc plugins |
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260 index_.listener_->CommitChanges(); |
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261 |
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262 isCommitted_ = true; |
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263 } |
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264 } |
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265 }; |
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266 |
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267 |
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268 class ServerIndex::UnstableResourcePayload |
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269 { |
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270 private: |
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271 ResourceType type_; |
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272 std::string publicId_; |
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273 boost::posix_time::ptime time_; |
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274 |
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275 public: |
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276 UnstableResourcePayload() : type_(ResourceType_Instance) |
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277 { |
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278 } |
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279 |
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280 UnstableResourcePayload(Orthanc::ResourceType type, |
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281 const std::string& publicId) : |
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282 type_(type), |
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283 publicId_(publicId) |
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284 { |
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285 time_ = boost::posix_time::second_clock::local_time(); |
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286 } |
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287 |
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288 unsigned int GetAge() const |
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289 { |
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290 return (boost::posix_time::second_clock::local_time() - time_).total_seconds(); |
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291 } |
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292 |
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293 ResourceType GetResourceType() const |
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294 { |
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295 return type_; |
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296 } |
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297 |
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298 const std::string& GetPublicId() const |
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299 { |
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300 return publicId_; |
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301 } |
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302 }; |
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303 |
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304 |
212 | 305 bool ServerIndex::DeleteResource(Json::Value& target, |
0 | 306 const std::string& uuid, |
202 | 307 ResourceType expectedType) |
0 | 308 { |
206
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309 boost::mutex::scoped_lock lock(mutex_); |
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310 |
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311 Transaction t(*this); |
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312 |
202 | 313 int64_t id; |
314 ResourceType type; | |
1294 | 315 if (!db_.LookupResource(id, type, uuid) || |
202 | 316 expectedType != type) |
0 | 317 { |
318 return false; | |
319 } | |
202 | 320 |
1247 | 321 db_.DeleteResource(id); |
0 | 322 |
202 | 323 if (listener_->HasRemainingLevel()) |
0 | 324 { |
202 | 325 ResourceType type = listener_->GetRemainingType(); |
326 const std::string& uuid = listener_->GetRemainingPublicId(); | |
0 | 327 |
328 target["RemainingAncestor"] = Json::Value(Json::objectValue); | |
204 | 329 target["RemainingAncestor"]["Path"] = GetBasePath(type, uuid); |
434
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330 target["RemainingAncestor"]["Type"] = EnumerationToString(type); |
0 | 331 target["RemainingAncestor"]["ID"] = uuid; |
332 } | |
333 else | |
334 { | |
335 target["RemainingAncestor"] = Json::nullValue; | |
336 } | |
337 | |
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338 t.Commit(0); |
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339 |
0 | 340 return true; |
341 } | |
342 | |
343 | |
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344 void ServerIndex::FlushThread(ServerIndex* that) |
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345 { |
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346 // By default, wait for 10 seconds before flushing |
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347 unsigned int sleep = 10; |
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348 |
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349 try |
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350 { |
744 | 351 boost::mutex::scoped_lock lock(that->mutex_); |
1239 | 352 std::string sleepString; |
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353 |
1247 | 354 if (that->db_.LookupGlobalProperty(sleepString, GlobalProperty_FlushSleep) && |
1239 | 355 Toolbox::IsInteger(sleepString)) |
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356 { |
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357 sleep = boost::lexical_cast<unsigned int>(sleepString); |
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358 } |
511
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359 } |
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360 catch (boost::bad_lexical_cast&) |
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361 { |
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362 } |
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363 |
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364 LOG(INFO) << "Starting the database flushing thread (sleep = " << sleep << ")"; |
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365 |
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366 unsigned int count = 0; |
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367 |
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368 while (!that->done_) |
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369 { |
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370 boost::this_thread::sleep(boost::posix_time::seconds(1)); |
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371 count++; |
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372 if (count < sleep) |
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373 { |
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374 continue; |
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375 } |
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376 |
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377 boost::mutex::scoped_lock lock(that->mutex_); |
1247 | 378 that->db_.FlushToDisk(); |
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379 count = 0; |
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380 } |
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381 |
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382 LOG(INFO) << "Stopping the database flushing thread"; |
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383 } |
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384 |
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385 |
1247 | 386 static void ComputeExpectedNumberOfInstances(IDatabaseWrapper& db, |
433 | 387 int64_t series, |
388 const DicomMap& dicomSummary) | |
389 { | |
390 try | |
391 { | |
656 | 392 const DicomValue* value; |
393 const DicomValue* value2; | |
394 | |
433 | 395 if ((value = dicomSummary.TestAndGetValue(DICOM_TAG_IMAGES_IN_ACQUISITION)) != NULL && |
396 (value2 = dicomSummary.TestAndGetValue(DICOM_TAG_NUMBER_OF_TEMPORAL_POSITIONS)) != NULL) | |
397 { | |
398 // Patch for series with temporal positions thanks to Will Ryder | |
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399 int64_t imagesInAcquisition = boost::lexical_cast<int64_t>(value->GetContent()); |
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400 int64_t countTemporalPositions = boost::lexical_cast<int64_t>(value2->GetContent()); |
433 | 401 std::string expected = boost::lexical_cast<std::string>(imagesInAcquisition * countTemporalPositions); |
402 db.SetMetadata(series, MetadataType_Series_ExpectedNumberOfInstances, expected); | |
403 } | |
404 | |
405 else if ((value = dicomSummary.TestAndGetValue(DICOM_TAG_NUMBER_OF_SLICES)) != NULL && | |
406 (value2 = dicomSummary.TestAndGetValue(DICOM_TAG_NUMBER_OF_TIME_SLICES)) != NULL) | |
407 { | |
408 // Support of Cardio-PET images | |
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409 int64_t numberOfSlices = boost::lexical_cast<int64_t>(value->GetContent()); |
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410 int64_t numberOfTimeSlices = boost::lexical_cast<int64_t>(value2->GetContent()); |
433 | 411 std::string expected = boost::lexical_cast<std::string>(numberOfSlices * numberOfTimeSlices); |
412 db.SetMetadata(series, MetadataType_Series_ExpectedNumberOfInstances, expected); | |
413 } | |
414 | |
415 else if ((value = dicomSummary.TestAndGetValue(DICOM_TAG_CARDIAC_NUMBER_OF_IMAGES)) != NULL) | |
416 { | |
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417 db.SetMetadata(series, MetadataType_Series_ExpectedNumberOfInstances, value->GetContent()); |
433 | 418 } |
419 } | |
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420 catch (OrthancException&) |
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421 { |
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422 } |
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423 catch (boost::bad_lexical_cast&) |
433 | 424 { |
425 } | |
426 } | |
427 | |
428 | |
1237 | 429 |
430 | |
1238 | 431 bool ServerIndex::GetMetadataAsInteger(int64_t& result, |
1237 | 432 int64_t id, |
433 MetadataType type) | |
434 { | |
1238 | 435 std::string s; |
1247 | 436 if (!db_.LookupMetadata(s, id, type)) |
1237 | 437 { |
438 return false; | |
439 } | |
440 | |
441 try | |
442 { | |
1238 | 443 result = boost::lexical_cast<int64_t>(s); |
1237 | 444 return true; |
445 } | |
446 catch (boost::bad_lexical_cast&) | |
447 { | |
448 return false; | |
449 } | |
450 } | |
451 | |
452 | |
1297 | 453 void ServerIndex::LogChange(int64_t internalId, |
454 ChangeType changeType, | |
455 ResourceType resourceType, | |
456 const std::string& publicId) | |
457 { | |
458 ServerIndexChange change(changeType, resourceType, publicId); | |
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459 |
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460 if (changeType <= ChangeType_INTERNAL_LastLogged) |
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461 { |
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462 db_.LogChange(internalId, change); |
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463 } |
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464 |
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465 assert(listener_.get() != NULL); |
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466 listener_->SignalChange(change); |
1297 | 467 } |
468 | |
1237 | 469 |
470 uint64_t ServerIndex::IncrementGlobalSequenceInternal(GlobalProperty property) | |
471 { | |
472 std::string oldValue; | |
473 | |
1247 | 474 if (db_.LookupGlobalProperty(oldValue, property)) |
1237 | 475 { |
476 uint64_t oldNumber; | |
477 | |
478 try | |
479 { | |
480 oldNumber = boost::lexical_cast<uint64_t>(oldValue); | |
1247 | 481 db_.SetGlobalProperty(property, boost::lexical_cast<std::string>(oldNumber + 1)); |
1237 | 482 return oldNumber + 1; |
483 } | |
484 catch (boost::bad_lexical_cast&) | |
485 { | |
486 throw OrthancException(ErrorCode_InternalError); | |
487 } | |
488 } | |
489 else | |
490 { | |
491 // Initialize the sequence at "1" | |
1247 | 492 db_.SetGlobalProperty(property, "1"); |
1237 | 493 return 1; |
494 } | |
495 } | |
496 | |
497 | |
498 | |
1299 | 499 int64_t ServerIndex::CreateResource(const std::string& publicId, |
500 ResourceType type) | |
501 { | |
502 int64_t id = db_.CreateResource(publicId, type); | |
503 | |
504 ChangeType changeType; | |
505 switch (type) | |
506 { | |
507 case ResourceType_Patient: | |
508 changeType = ChangeType_NewPatient; | |
509 break; | |
510 | |
511 case ResourceType_Study: | |
512 changeType = ChangeType_NewStudy; | |
513 break; | |
514 | |
515 case ResourceType_Series: | |
516 changeType = ChangeType_NewSeries; | |
517 break; | |
518 | |
519 case ResourceType_Instance: | |
520 changeType = ChangeType_NewInstance; | |
521 break; | |
522 | |
523 default: | |
524 throw OrthancException(ErrorCode_InternalError); | |
525 } | |
526 | |
527 ServerIndexChange change(changeType, type, publicId); | |
528 db_.LogChange(id, change); | |
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529 |
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530 assert(listener_.get() != NULL); |
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531 listener_->SignalChange(change); |
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532 |
1299 | 533 return id; |
534 } | |
535 | |
1286 | 536 |
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537 ServerIndex::ServerIndex(ServerContext& context, |
1247 | 538 IDatabaseWrapper& db) : |
511
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539 done_(false), |
1247 | 540 db_(db), |
269
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541 maximumStorageSize_(0), |
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542 maximumPatients_(0) |
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543 { |
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544 listener_.reset(new Listener(context)); |
1247 | 545 db_.SetListener(*listener_); |
180
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546 |
1247 | 547 currentStorageSize_ = db_.GetTotalCompressedSize(); |
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548 |
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549 // Initial recycling if the parameters have changed since the last |
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550 // execution of Orthanc |
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551 StandaloneRecycling(); |
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552 |
1306
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553 if (db.HasFlushToDisk()) |
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554 { |
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555 flushThread_ = boost::thread(FlushThread, this); |
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556 } |
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557 |
511
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558 unstableResourcesMonitorThread_ = boost::thread(UnstableResourcesMonitorThread, this); |
206
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559 } |
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560 |
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561 |
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562 |
206
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563 ServerIndex::~ServerIndex() |
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564 { |
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565 if (!done_) |
511
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566 { |
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567 LOG(ERROR) << "INTERNAL ERROR: ServerIndex::Stop() should be invoked manually to avoid mess in the destruction order!"; |
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568 Stop(); |
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569 } |
0 | 570 } |
571 | |
572 | |
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573 |
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574 void ServerIndex::Stop() |
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575 { |
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576 if (!done_) |
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577 { |
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578 done_ = true; |
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579 |
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580 if (db_.HasFlushToDisk() && |
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581 flushThread_.joinable()) |
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582 { |
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583 flushThread_.join(); |
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584 } |
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585 |
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586 if (unstableResourcesMonitorThread_.joinable()) |
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587 { |
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588 unstableResourcesMonitorThread_.join(); |
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589 } |
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590 } |
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591 } |
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592 |
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593 |
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594 |
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595 StoreStatus ServerIndex::Store(std::map<MetadataType, std::string>& instanceMetadata, |
1822 | 596 DicomInstanceToStore& instanceToStore, |
597 const Attachments& attachments) | |
0 | 598 { |
206
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599 boost::mutex::scoped_lock lock(mutex_); |
0 | 600 |
1822 | 601 const DicomMap& dicomSummary = instanceToStore.GetSummary(); |
602 const ServerIndex::MetadataMap& metadata = instanceToStore.GetMetadata(); | |
603 | |
1006
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604 instanceMetadata.clear(); |
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605 |
1822 | 606 DicomInstanceHasher hasher(instanceToStore.GetSummary()); |
0 | 607 |
608 try | |
609 { | |
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610 Transaction t(*this); |
0 | 611 |
202 | 612 // Do nothing if the instance already exists |
0 | 613 { |
432 | 614 ResourceType type; |
615 int64_t tmp; | |
1294 | 616 if (db_.LookupResource(tmp, type, hasher.HashInstance())) |
432 | 617 { |
618 assert(type == ResourceType_Instance); | |
1247 | 619 db_.GetAllMetadata(instanceMetadata, tmp); |
432 | 620 return StoreStatus_AlreadyStored; |
621 } | |
0 | 622 } |
623 | |
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624 // Ensure there is enough room in the storage for the new instance |
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625 uint64_t instanceSize = 0; |
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626 for (Attachments::const_iterator it = attachments.begin(); |
656 | 627 it != attachments.end(); ++it) |
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628 { |
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629 instanceSize += it->GetCompressedSize(); |
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630 } |
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631 |
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632 Recycle(instanceSize, hasher.HashPatient()); |
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633 |
202 | 634 // Create the instance |
1299 | 635 int64_t instance = CreateResource(hasher.HashInstance(), ResourceType_Instance); |
2120 | 636 ServerToolbox::StoreMainDicomTags(db_, instance, ResourceType_Instance, dicomSummary); |
202 | 637 |
432 | 638 // Detect up to which level the patient/study/series/instance |
639 // hierarchy must be created | |
640 int64_t patient = -1, study = -1, series = -1; | |
641 bool isNewPatient = false; | |
642 bool isNewStudy = false; | |
643 bool isNewSeries = false; | |
644 | |
0 | 645 { |
432 | 646 ResourceType dummy; |
647 | |
1294 | 648 if (db_.LookupResource(series, dummy, hasher.HashSeries())) |
432 | 649 { |
650 assert(dummy == ResourceType_Series); | |
651 // The patient, the study and the series already exist | |
652 | |
1294 | 653 bool ok = (db_.LookupResource(patient, dummy, hasher.HashPatient()) && |
654 db_.LookupResource(study, dummy, hasher.HashStudy())); | |
432 | 655 assert(ok); |
656 } | |
1294 | 657 else if (db_.LookupResource(study, dummy, hasher.HashStudy())) |
432 | 658 { |
659 assert(dummy == ResourceType_Study); | |
660 | |
661 // New series: The patient and the study already exist | |
662 isNewSeries = true; | |
663 | |
1294 | 664 bool ok = db_.LookupResource(patient, dummy, hasher.HashPatient()); |
432 | 665 assert(ok); |
666 } | |
1294 | 667 else if (db_.LookupResource(patient, dummy, hasher.HashPatient())) |
432 | 668 { |
669 assert(dummy == ResourceType_Patient); | |
670 | |
671 // New study and series: The patient already exist | |
672 isNewStudy = true; | |
673 isNewSeries = true; | |
674 } | |
675 else | |
676 { | |
677 // New patient, study and series: Nothing exists | |
678 isNewPatient = true; | |
679 isNewStudy = true; | |
680 isNewSeries = true; | |
681 } | |
682 } | |
683 | |
684 // Create the series if needed | |
685 if (isNewSeries) | |
686 { | |
1299 | 687 series = CreateResource(hasher.HashSeries(), ResourceType_Series); |
2120 | 688 ServerToolbox::StoreMainDicomTags(db_, series, ResourceType_Series, dicomSummary); |
432 | 689 } |
202 | 690 |
432 | 691 // Create the study if needed |
692 if (isNewStudy) | |
693 { | |
1299 | 694 study = CreateResource(hasher.HashStudy(), ResourceType_Study); |
2120 | 695 ServerToolbox::StoreMainDicomTags(db_, study, ResourceType_Study, dicomSummary); |
432 | 696 } |
697 | |
698 // Create the patient if needed | |
699 if (isNewPatient) | |
700 { | |
1299 | 701 patient = CreateResource(hasher.HashPatient(), ResourceType_Patient); |
2120 | 702 ServerToolbox::StoreMainDicomTags(db_, patient, ResourceType_Patient, dicomSummary); |
432 | 703 } |
202 | 704 |
432 | 705 // Create the parent-to-child links |
1247 | 706 db_.AttachChild(series, instance); |
432 | 707 |
708 if (isNewSeries) | |
709 { | |
1247 | 710 db_.AttachChild(study, series); |
0 | 711 } |
432 | 712 |
713 if (isNewStudy) | |
0 | 714 { |
1247 | 715 db_.AttachChild(patient, study); |
0 | 716 } |
717 | |
432 | 718 // Sanity checks |
719 assert(patient != -1); | |
720 assert(study != -1); | |
721 assert(series != -1); | |
722 assert(instance != -1); | |
723 | |
202 | 724 // Attach the files to the newly created instance |
232
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725 for (Attachments::const_iterator it = attachments.begin(); |
656 | 726 it != attachments.end(); ++it) |
232
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727 { |
1247 | 728 db_.AddAttachment(instance, *it); |
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729 } |
202 | 730 |
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731 // Attach the user-specified metadata |
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732 for (MetadataMap::const_iterator |
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733 it = metadata.begin(); it != metadata.end(); ++it) |
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734 { |
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735 switch (it->first.first) |
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736 { |
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737 case ResourceType_Patient: |
1247 | 738 db_.SetMetadata(patient, it->first.second, it->second); |
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739 break; |
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740 |
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741 case ResourceType_Study: |
1247 | 742 db_.SetMetadata(study, it->first.second, it->second); |
1006
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743 break; |
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744 |
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745 case ResourceType_Series: |
1247 | 746 db_.SetMetadata(series, it->first.second, it->second); |
1006
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747 break; |
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748 |
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749 case ResourceType_Instance: |
1247 | 750 db_.SetMetadata(instance, it->first.second, it->second); |
1006
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751 instanceMetadata[it->first.second] = it->second; |
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752 break; |
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753 |
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754 default: |
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755 throw OrthancException(ErrorCode_ParameterOutOfRange); |
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756 } |
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757 } |
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758 |
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759 // Attach the auto-computed metadata for the patient/study/series levels |
432 | 760 std::string now = Toolbox::GetNowIsoString(); |
1247 | 761 db_.SetMetadata(series, MetadataType_LastUpdate, now); |
762 db_.SetMetadata(study, MetadataType_LastUpdate, now); | |
763 db_.SetMetadata(patient, MetadataType_LastUpdate, now); | |
1004
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Sebastien Jodogne <s.jodogne@gmail.com>
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764 |
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765 // Attach the auto-computed metadata for the instance level, |
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DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
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|
766 // reflecting these additions into the input metadata map |
1247 | 767 db_.SetMetadata(instance, MetadataType_Instance_ReceptionDate, now); |
1006
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Sebastien Jodogne <s.jodogne@gmail.com>
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768 instanceMetadata[MetadataType_Instance_ReceptionDate] = now; |
202 | 769 |
1822 | 770 db_.SetMetadata(instance, MetadataType_Instance_RemoteAet, instanceToStore.GetRemoteAet()); |
771 instanceMetadata[MetadataType_Instance_RemoteAet] = instanceToStore.GetRemoteAet(); | |
1004
a226e0959d8b
DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
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|
772 |
1823
0ef4e6e66b56
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
773 { |
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
774 std::string s = EnumerationToString(instanceToStore.GetRequestOrigin()); |
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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775 db_.SetMetadata(instance, MetadataType_Instance_Origin, s); |
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
776 instanceMetadata[MetadataType_Instance_Origin] = s; |
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1822
diff
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|
777 } |
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Sebastien Jodogne <s.jodogne@gmail.com>
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1822
diff
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|
778 |
202 | 779 const DicomValue* value; |
780 if ((value = dicomSummary.TestAndGetValue(DICOM_TAG_INSTANCE_NUMBER)) != NULL || | |
781 (value = dicomSummary.TestAndGetValue(DICOM_TAG_IMAGE_INDEX)) != NULL) | |
0 | 782 { |
1737
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diff
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|
783 if (!value->IsNull() && |
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784 !value->IsBinary()) |
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|
785 { |
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diff
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|
786 db_.SetMetadata(instance, MetadataType_Instance_IndexInSeries, value->GetContent()); |
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|
787 instanceMetadata[MetadataType_Instance_IndexInSeries] = value->GetContent(); |
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diff
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|
788 } |
0 | 789 } |
790 | |
1004
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diff
changeset
|
791 // Check whether the series of this new instance is now completed |
202 | 792 if (isNewSeries) |
793 { | |
1247 | 794 ComputeExpectedNumberOfInstances(db_, series, dicomSummary); |
202 | 795 } |
796 | |
205
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797 SeriesStatus seriesStatus = GetSeriesStatus(series); |
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798 if (seriesStatus == SeriesStatus_Complete) |
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799 { |
1237 | 800 LogChange(series, ChangeType_CompletedSeries, ResourceType_Series, hasher.HashSeries()); |
205
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|
801 } |
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diff
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|
802 |
511
3b735fdf320b
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
803 // Mark the parent resources of this instance as unstable |
1177
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
804 MarkAsUnstable(series, ResourceType_Series, hasher.HashSeries()); |
5b2d8c280ac2
Plugins can monitor changes through callbacks
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diff
changeset
|
805 MarkAsUnstable(study, ResourceType_Study, hasher.HashStudy()); |
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|
806 MarkAsUnstable(patient, ResourceType_Patient, hasher.HashPatient()); |
511
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|
807 |
278
771f12042be9
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diff
changeset
|
808 t.Commit(instanceSize); |
268
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|
809 |
0 | 810 return StoreStatus_Success; |
811 } | |
62 | 812 catch (OrthancException& e) |
0 | 813 { |
1247 | 814 LOG(ERROR) << "EXCEPTION [" << e.What() << "]"; |
0 | 815 } |
816 | |
817 return StoreStatus_Failure; | |
818 } | |
819 | |
820 | |
238 | 821 void ServerIndex::ComputeStatistics(Json::Value& target) |
0 | 822 { |
206
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823 boost::mutex::scoped_lock lock(mutex_); |
238 | 824 target = Json::objectValue; |
0 | 825 |
278
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|
826 uint64_t cs = currentStorageSize_; |
1247 | 827 assert(cs == db_.GetTotalCompressedSize()); |
828 uint64_t us = db_.GetTotalUncompressedSize(); | |
440
23e5b35e3c5c
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
438
diff
changeset
|
829 target["TotalDiskSize"] = boost::lexical_cast<std::string>(cs); |
238 | 830 target["TotalUncompressedSize"] = boost::lexical_cast<std::string>(us); |
1310
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diff
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|
831 target["TotalDiskSizeMB"] = static_cast<unsigned int>(cs / MEGA_BYTES); |
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832 target["TotalUncompressedSizeMB"] = static_cast<unsigned int>(us / MEGA_BYTES); |
238 | 833 |
1247 | 834 target["CountPatients"] = static_cast<unsigned int>(db_.GetResourceCount(ResourceType_Patient)); |
835 target["CountStudies"] = static_cast<unsigned int>(db_.GetResourceCount(ResourceType_Study)); | |
836 target["CountSeries"] = static_cast<unsigned int>(db_.GetResourceCount(ResourceType_Series)); | |
837 target["CountInstances"] = static_cast<unsigned int>(db_.GetResourceCount(ResourceType_Instance)); | |
238 | 838 } |
839 | |
187
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|
840 |
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841 |
585 | 842 SeriesStatus ServerIndex::GetSeriesStatus(int64_t id) |
199 | 843 { |
844 // Get the expected number of instances in this series (from the metadata) | |
1238 | 845 int64_t expected; |
846 if (!GetMetadataAsInteger(expected, id, MetadataType_Series_ExpectedNumberOfInstances)) | |
199 | 847 { |
848 return SeriesStatus_Unknown; | |
849 } | |
850 | |
851 // Loop over the instances of this series | |
852 std::list<int64_t> children; | |
1247 | 853 db_.GetChildrenInternalId(children, id); |
199 | 854 |
1238 | 855 std::set<int64_t> instances; |
199 | 856 for (std::list<int64_t>::const_iterator |
656 | 857 it = children.begin(); it != children.end(); ++it) |
199 | 858 { |
859 // Get the index of this instance in the series | |
1238 | 860 int64_t index; |
861 if (!GetMetadataAsInteger(index, *it, MetadataType_Instance_IndexInSeries)) | |
199 | 862 { |
863 return SeriesStatus_Unknown; | |
864 } | |
865 | |
656 | 866 if (!(index > 0 && index <= expected)) |
199 | 867 { |
868 // Out-of-range instance index | |
869 return SeriesStatus_Inconsistent; | |
870 } | |
871 | |
872 if (instances.find(index) != instances.end()) | |
873 { | |
874 // Twice the same instance index | |
875 return SeriesStatus_Inconsistent; | |
876 } | |
877 | |
878 instances.insert(index); | |
879 } | |
880 | |
1238 | 881 if (static_cast<int64_t>(instances.size()) == expected) |
199 | 882 { |
883 return SeriesStatus_Complete; | |
884 } | |
885 else | |
886 { | |
887 return SeriesStatus_Missing; | |
888 } | |
889 } | |
890 | |
891 | |
202 | 892 void ServerIndex::MainDicomTagsToJson(Json::Value& target, |
1668
de1413733c97
reconstructing main dicom tags
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
893 int64_t resourceId, |
de1413733c97
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diff
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|
894 ResourceType resourceType) |
198
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|
895 { |
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diff
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|
896 DicomMap tags; |
1247 | 897 db_.GetMainDicomTags(tags, resourceId); |
1676
f079f3efe33b
patient tags reported in studies
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
898 |
f079f3efe33b
patient tags reported in studies
Sebastien Jodogne <s.jodogne@gmail.com>
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1668
diff
changeset
|
899 if (resourceType == ResourceType_Study) |
f079f3efe33b
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1668
diff
changeset
|
900 { |
f079f3efe33b
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1668
diff
changeset
|
901 DicomMap t1, t2; |
f079f3efe33b
patient tags reported in studies
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1668
diff
changeset
|
902 tags.ExtractStudyInformation(t1); |
f079f3efe33b
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1668
diff
changeset
|
903 tags.ExtractPatientInformation(t2); |
f079f3efe33b
patient tags reported in studies
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
904 |
f079f3efe33b
patient tags reported in studies
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1668
diff
changeset
|
905 target["MainDicomTags"] = Json::objectValue; |
f079f3efe33b
patient tags reported in studies
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1668
diff
changeset
|
906 FromDcmtkBridge::ToJson(target["MainDicomTags"], t1, true); |
f079f3efe33b
patient tags reported in studies
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1668
diff
changeset
|
907 |
f079f3efe33b
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1668
diff
changeset
|
908 target["PatientMainDicomTags"] = Json::objectValue; |
f079f3efe33b
patient tags reported in studies
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1668
diff
changeset
|
909 FromDcmtkBridge::ToJson(target["PatientMainDicomTags"], t2, true); |
f079f3efe33b
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1668
diff
changeset
|
910 } |
f079f3efe33b
patient tags reported in studies
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1668
diff
changeset
|
911 else |
f079f3efe33b
patient tags reported in studies
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1668
diff
changeset
|
912 { |
f079f3efe33b
patient tags reported in studies
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1668
diff
changeset
|
913 target["MainDicomTags"] = Json::objectValue; |
f079f3efe33b
patient tags reported in studies
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1668
diff
changeset
|
914 FromDcmtkBridge::ToJson(target["MainDicomTags"], tags, true); |
f079f3efe33b
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
915 } |
198
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|
916 } |
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917 |
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diff
changeset
|
918 bool ServerIndex::LookupResource(Json::Value& result, |
199 | 919 const std::string& publicId, |
920 ResourceType expectedType) | |
198
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921 { |
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922 result = Json::objectValue; |
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923 |
206
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diff
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|
924 boost::mutex::scoped_lock lock(mutex_); |
199 | 925 |
198
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926 // Lookup for the requested resource |
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927 int64_t id; |
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diff
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|
928 ResourceType type; |
1294 | 929 if (!db_.LookupResource(id, type, publicId) || |
199 | 930 type != expectedType) |
198
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931 { |
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diff
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932 return false; |
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933 } |
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934 |
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935 // Find the parent resource (if it exists) |
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936 if (type != ResourceType_Patient) |
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937 { |
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diff
changeset
|
938 int64_t parentId; |
1247 | 939 if (!db_.LookupParent(parentId, id)) |
198
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940 { |
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|
941 throw OrthancException(ErrorCode_InternalError); |
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942 } |
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943 |
1247 | 944 std::string parent = db_.GetPublicId(parentId); |
198
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945 |
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946 switch (type) |
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947 { |
269
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|
948 case ResourceType_Study: |
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|
949 result["ParentPatient"] = parent; |
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950 break; |
198
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951 |
269
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952 case ResourceType_Series: |
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953 result["ParentStudy"] = parent; |
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|
954 break; |
198
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955 |
269
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956 case ResourceType_Instance: |
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|
957 result["ParentSeries"] = parent; |
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|
958 break; |
198
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diff
changeset
|
959 |
269
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diff
changeset
|
960 default: |
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diff
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|
961 throw OrthancException(ErrorCode_InternalError); |
198
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before refactoring of ServerIndex::GetXXX
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parents:
197
diff
changeset
|
962 } |
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diff
changeset
|
963 } |
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diff
changeset
|
964 |
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diff
changeset
|
965 // List the children resources |
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197
diff
changeset
|
966 std::list<std::string> children; |
1247 | 967 db_.GetChildrenPublicId(children, id); |
198
663cc6c46d0a
before refactoring of ServerIndex::GetXXX
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diff
changeset
|
968 |
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197
diff
changeset
|
969 if (type != ResourceType_Instance) |
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
197
diff
changeset
|
970 { |
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parents:
197
diff
changeset
|
971 Json::Value c = Json::arrayValue; |
663cc6c46d0a
before refactoring of ServerIndex::GetXXX
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parents:
197
diff
changeset
|
972 |
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parents:
197
diff
changeset
|
973 for (std::list<std::string>::const_iterator |
656 | 974 it = children.begin(); it != children.end(); ++it) |
198
663cc6c46d0a
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
975 { |
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before refactoring of ServerIndex::GetXXX
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diff
changeset
|
976 c.append(*it); |
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before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
197
diff
changeset
|
977 } |
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before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
197
diff
changeset
|
978 |
663cc6c46d0a
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
197
diff
changeset
|
979 switch (type) |
663cc6c46d0a
before refactoring of ServerIndex::GetXXX
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parents:
197
diff
changeset
|
980 { |
269
f6fdf5abe751
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
268
diff
changeset
|
981 case ResourceType_Patient: |
f6fdf5abe751
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parents:
268
diff
changeset
|
982 result["Studies"] = c; |
f6fdf5abe751
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
268
diff
changeset
|
983 break; |
198
663cc6c46d0a
before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
197
diff
changeset
|
984 |
269
f6fdf5abe751
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
268
diff
changeset
|
985 case ResourceType_Study: |
f6fdf5abe751
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
268
diff
changeset
|
986 result["Series"] = c; |
f6fdf5abe751
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
268
diff
changeset
|
987 break; |
198
663cc6c46d0a
before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
197
diff
changeset
|
988 |
269
f6fdf5abe751
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
268
diff
changeset
|
989 case ResourceType_Series: |
f6fdf5abe751
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parents:
268
diff
changeset
|
990 result["Instances"] = c; |
f6fdf5abe751
recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
268
diff
changeset
|
991 break; |
198
663cc6c46d0a
before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
197
diff
changeset
|
992 |
269
f6fdf5abe751
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
268
diff
changeset
|
993 default: |
f6fdf5abe751
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
268
diff
changeset
|
994 throw OrthancException(ErrorCode_InternalError); |
198
663cc6c46d0a
before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
197
diff
changeset
|
995 } |
663cc6c46d0a
before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
197
diff
changeset
|
996 } |
663cc6c46d0a
before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
197
diff
changeset
|
997 |
663cc6c46d0a
before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
197
diff
changeset
|
998 // Set the resource type |
663cc6c46d0a
before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
197
diff
changeset
|
999 switch (type) |
663cc6c46d0a
before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
197
diff
changeset
|
1000 { |
269
f6fdf5abe751
recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
268
diff
changeset
|
1001 case ResourceType_Patient: |
f6fdf5abe751
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
268
diff
changeset
|
1002 result["Type"] = "Patient"; |
f6fdf5abe751
recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
268
diff
changeset
|
1003 break; |
198
663cc6c46d0a
before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
197
diff
changeset
|
1004 |
269
f6fdf5abe751
recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
268
diff
changeset
|
1005 case ResourceType_Study: |
f6fdf5abe751
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
268
diff
changeset
|
1006 result["Type"] = "Study"; |
f6fdf5abe751
recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
268
diff
changeset
|
1007 break; |
199 | 1008 |
269
f6fdf5abe751
recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
268
diff
changeset
|
1009 case ResourceType_Series: |
f6fdf5abe751
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
268
diff
changeset
|
1010 { |
f6fdf5abe751
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
268
diff
changeset
|
1011 result["Type"] = "Series"; |
434
ccf3a0a43dac
EnumerationDictionary
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
433
diff
changeset
|
1012 result["Status"] = EnumerationToString(GetSeriesStatus(id)); |
198
663cc6c46d0a
before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
197
diff
changeset
|
1013 |
1238 | 1014 int64_t i; |
1237 | 1015 if (GetMetadataAsInteger(i, id, MetadataType_Series_ExpectedNumberOfInstances)) |
1238 | 1016 result["ExpectedNumberOfInstances"] = static_cast<int>(i); |
269
f6fdf5abe751
recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
268
diff
changeset
|
1017 else |
f6fdf5abe751
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
268
diff
changeset
|
1018 result["ExpectedNumberOfInstances"] = Json::nullValue; |
200
9c58b2b03cf0
refactoring of read operations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
199
diff
changeset
|
1019 |
269
f6fdf5abe751
recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
268
diff
changeset
|
1020 break; |
200
9c58b2b03cf0
refactoring of read operations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
199
diff
changeset
|
1021 } |
9c58b2b03cf0
refactoring of read operations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
199
diff
changeset
|
1022 |
269
f6fdf5abe751
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
268
diff
changeset
|
1023 case ResourceType_Instance: |
f6fdf5abe751
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
268
diff
changeset
|
1024 { |
f6fdf5abe751
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parents:
268
diff
changeset
|
1025 result["Type"] = "Instance"; |
f6fdf5abe751
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
268
diff
changeset
|
1026 |
f6fdf5abe751
recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
268
diff
changeset
|
1027 FileInfo attachment; |
1247 | 1028 if (!db_.LookupAttachment(attachment, id, FileContentType_Dicom)) |
269
f6fdf5abe751
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
268
diff
changeset
|
1029 { |
f6fdf5abe751
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
268
diff
changeset
|
1030 throw OrthancException(ErrorCode_InternalError); |
f6fdf5abe751
recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
268
diff
changeset
|
1031 } |
200
9c58b2b03cf0
refactoring of read operations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
199
diff
changeset
|
1032 |
269
f6fdf5abe751
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
268
diff
changeset
|
1033 result["FileSize"] = static_cast<unsigned int>(attachment.GetUncompressedSize()); |
f6fdf5abe751
recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
268
diff
changeset
|
1034 result["FileUuid"] = attachment.GetUuid(); |
200
9c58b2b03cf0
refactoring of read operations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
199
diff
changeset
|
1035 |
1238 | 1036 int64_t i; |
1237 | 1037 if (GetMetadataAsInteger(i, id, MetadataType_Instance_IndexInSeries)) |
1238 | 1038 result["IndexInSeries"] = static_cast<int>(i); |
269
f6fdf5abe751
recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
268
diff
changeset
|
1039 else |
f6fdf5abe751
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
268
diff
changeset
|
1040 result["IndexInSeries"] = Json::nullValue; |
198
663cc6c46d0a
before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
197
diff
changeset
|
1041 |
269
f6fdf5abe751
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
268
diff
changeset
|
1042 break; |
f6fdf5abe751
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
268
diff
changeset
|
1043 } |
f6fdf5abe751
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
268
diff
changeset
|
1044 |
f6fdf5abe751
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
268
diff
changeset
|
1045 default: |
f6fdf5abe751
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
268
diff
changeset
|
1046 throw OrthancException(ErrorCode_InternalError); |
198
663cc6c46d0a
before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
197
diff
changeset
|
1047 } |
663cc6c46d0a
before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
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197
diff
changeset
|
1048 |
663cc6c46d0a
before refactoring of ServerIndex::GetXXX
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parents:
197
diff
changeset
|
1049 // Record the remaining information |
663cc6c46d0a
before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
197
diff
changeset
|
1050 result["ID"] = publicId; |
1668
de1413733c97
reconstructing main dicom tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1555
diff
changeset
|
1051 MainDicomTagsToJson(result, id, type); |
198
663cc6c46d0a
before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
197
diff
changeset
|
1052 |
315 | 1053 std::string tmp; |
1054 | |
1247 | 1055 if (db_.LookupMetadata(tmp, id, MetadataType_AnonymizedFrom)) |
1236 | 1056 { |
315 | 1057 result["AnonymizedFrom"] = tmp; |
1236 | 1058 } |
315 | 1059 |
1247 | 1060 if (db_.LookupMetadata(tmp, id, MetadataType_ModifiedFrom)) |
1236 | 1061 { |
315 | 1062 result["ModifiedFrom"] = tmp; |
1236 | 1063 } |
315 | 1064 |
511
3b735fdf320b
monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
440
diff
changeset
|
1065 if (type == ResourceType_Patient || |
3b735fdf320b
monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
440
diff
changeset
|
1066 type == ResourceType_Study || |
3b735fdf320b
monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
440
diff
changeset
|
1067 type == ResourceType_Series) |
3b735fdf320b
monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
440
diff
changeset
|
1068 { |
3b735fdf320b
monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
440
diff
changeset
|
1069 result["IsStable"] = !unstableResources_.Contains(id); |
1148
ac36589f699e
LastUpdate metadata is now always returned for patients, studies and series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1139
diff
changeset
|
1070 |
1247 | 1071 if (db_.LookupMetadata(tmp, id, MetadataType_LastUpdate)) |
1236 | 1072 { |
1148
ac36589f699e
LastUpdate metadata is now always returned for patients, studies and series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1139
diff
changeset
|
1073 result["LastUpdate"] = tmp; |
1236 | 1074 } |
511
3b735fdf320b
monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
440
diff
changeset
|
1075 } |
3b735fdf320b
monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
440
diff
changeset
|
1076 |
198
663cc6c46d0a
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parents:
197
diff
changeset
|
1077 return true; |
663cc6c46d0a
before refactoring of ServerIndex::GetXXX
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parents:
197
diff
changeset
|
1078 } |
663cc6c46d0a
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parents:
197
diff
changeset
|
1079 |
0 | 1080 |
232
5368bbe813cf
refactoring of attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
231
diff
changeset
|
1081 bool ServerIndex::LookupAttachment(FileInfo& attachment, |
5368bbe813cf
refactoring of attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
231
diff
changeset
|
1082 const std::string& instanceUuid, |
233 | 1083 FileContentType contentType) |
0 | 1084 { |
206
4453a010d0db
flush to disk thread
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
205
diff
changeset
|
1085 boost::mutex::scoped_lock lock(mutex_); |
0 | 1086 |
193
a1b9d1e1497b
failed attempt to compile with linux standard base
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
192
diff
changeset
|
1087 int64_t id; |
a1b9d1e1497b
failed attempt to compile with linux standard base
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
192
diff
changeset
|
1088 ResourceType type; |
1294 | 1089 if (!db_.LookupResource(id, type, instanceUuid)) |
192
c56dc32266e0
refactoring getfile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
191
diff
changeset
|
1090 { |
1113
ba5c0908600c
Refactoring of HttpOutput ("Content-Length" header is now always sent)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1102
diff
changeset
|
1091 throw OrthancException(ErrorCode_UnknownResource); |
192
c56dc32266e0
refactoring getfile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
191
diff
changeset
|
1092 } |
193
a1b9d1e1497b
failed attempt to compile with linux standard base
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
192
diff
changeset
|
1093 |
1247 | 1094 if (db_.LookupAttachment(attachment, id, contentType)) |
232
5368bbe813cf
refactoring of attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
231
diff
changeset
|
1095 { |
233 | 1096 assert(attachment.GetContentType() == contentType); |
232
5368bbe813cf
refactoring of attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
231
diff
changeset
|
1097 return true; |
5368bbe813cf
refactoring of attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
231
diff
changeset
|
1098 } |
5368bbe813cf
refactoring of attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
231
diff
changeset
|
1099 else |
5368bbe813cf
refactoring of attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
231
diff
changeset
|
1100 { |
5368bbe813cf
refactoring of attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
231
diff
changeset
|
1101 return false; |
5368bbe813cf
refactoring of attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
231
diff
changeset
|
1102 } |
192
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1103 } |
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1104 |
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1105 |
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1106 |
1354 | 1107 void ServerIndex::GetAllUuids(std::list<std::string>& target, |
190 | 1108 ResourceType resourceType) |
0 | 1109 { |
1357 | 1110 boost::mutex::scoped_lock lock(mutex_); |
1111 db_.GetAllPublicIds(target, resourceType); | |
0 | 1112 } |
1113 | |
1114 | |
1509
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1115 void ServerIndex::GetAllUuids(std::list<std::string>& target, |
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1116 ResourceType resourceType, |
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1117 size_t since, |
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1118 size_t limit) |
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1119 { |
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1120 if (limit == 0) |
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1121 { |
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1122 target.clear(); |
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1123 return; |
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1124 } |
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1125 |
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1126 boost::mutex::scoped_lock lock(mutex_); |
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1127 db_.GetAllPublicIds(target, resourceType, since, limit); |
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1128 } |
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1129 |
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1130 |
1244 | 1131 template <typename T> |
1132 static void FormatLog(Json::Value& target, | |
1133 const std::list<T>& log, | |
1134 const std::string& name, | |
1135 bool done, | |
1136 int64_t since) | |
1240 | 1137 { |
1138 Json::Value items = Json::arrayValue; | |
1244 | 1139 for (typename std::list<T>::const_iterator |
1304 | 1140 it = log.begin(); it != log.end(); ++it) |
1240 | 1141 { |
1142 Json::Value item; | |
1143 it->Format(item); | |
1144 items.append(item); | |
1145 } | |
1146 | |
1147 target = Json::objectValue; | |
1244 | 1148 target[name] = items; |
1240 | 1149 target["Done"] = done; |
1150 | |
1305 | 1151 int64_t last = (log.empty() ? since : log.back().GetSeq()); |
1240 | 1152 target["Last"] = static_cast<int>(last); |
1153 } | |
1154 | |
1155 | |
1247 | 1156 void ServerIndex::GetChanges(Json::Value& target, |
204 | 1157 int64_t since, |
0 | 1158 unsigned int maxResults) |
1159 { | |
1240 | 1160 std::list<ServerIndexChange> changes; |
1161 bool done; | |
1162 | |
1163 { | |
1164 boost::mutex::scoped_lock lock(mutex_); | |
1247 | 1165 db_.GetChanges(changes, done, since, maxResults); |
1240 | 1166 } |
1167 | |
1244 | 1168 FormatLog(target, changes, "Changes", done, since); |
237
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1169 } |
0 | 1170 |
1240 | 1171 |
1247 | 1172 void ServerIndex::GetLastChange(Json::Value& target) |
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1173 { |
1240 | 1174 std::list<ServerIndexChange> changes; |
1175 | |
1176 { | |
1177 boost::mutex::scoped_lock lock(mutex_); | |
1247 | 1178 db_.GetLastChange(changes); |
1240 | 1179 } |
1180 | |
1244 | 1181 FormatLog(target, changes, "Changes", true, 0); |
0 | 1182 } |
231 | 1183 |
1240 | 1184 |
231 | 1185 void ServerIndex::LogExportedResource(const std::string& publicId, |
1186 const std::string& remoteModality) | |
1187 { | |
1188 boost::mutex::scoped_lock lock(mutex_); | |
1310
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1189 Transaction transaction(*this); |
231 | 1190 |
1191 int64_t id; | |
1192 ResourceType type; | |
1294 | 1193 if (!db_.LookupResource(id, type, publicId)) |
231 | 1194 { |
1195 throw OrthancException(ErrorCode_InternalError); | |
1196 } | |
1197 | |
1198 std::string patientId; | |
1199 std::string studyInstanceUid; | |
1200 std::string seriesInstanceUid; | |
1201 std::string sopInstanceUid; | |
1202 | |
1203 int64_t currentId = id; | |
1204 ResourceType currentType = type; | |
1205 | |
1206 // Iteratively go up inside the patient/study/series/instance hierarchy | |
1207 bool done = false; | |
1208 while (!done) | |
1209 { | |
1210 DicomMap map; | |
1247 | 1211 db_.GetMainDicomTags(map, currentId); |
231 | 1212 |
1213 switch (currentType) | |
1214 { | |
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1215 case ResourceType_Patient: |
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1216 if (map.HasTag(DICOM_TAG_PATIENT_ID)) |
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1217 { |
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1218 patientId = map.GetValue(DICOM_TAG_PATIENT_ID).GetContent(); |
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1219 } |
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1220 done = true; |
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1221 break; |
231 | 1222 |
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1223 case ResourceType_Study: |
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1224 if (map.HasTag(DICOM_TAG_STUDY_INSTANCE_UID)) |
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1225 { |
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1226 studyInstanceUid = map.GetValue(DICOM_TAG_STUDY_INSTANCE_UID).GetContent(); |
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1227 } |
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1228 currentType = ResourceType_Patient; |
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1229 break; |
231 | 1230 |
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1231 case ResourceType_Series: |
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1232 if (map.HasTag(DICOM_TAG_SERIES_INSTANCE_UID)) |
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1233 { |
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1234 seriesInstanceUid = map.GetValue(DICOM_TAG_SERIES_INSTANCE_UID).GetContent(); |
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1235 } |
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1236 currentType = ResourceType_Study; |
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1237 break; |
231 | 1238 |
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1239 case ResourceType_Instance: |
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1240 if (map.HasTag(DICOM_TAG_SOP_INSTANCE_UID)) |
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1241 { |
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1242 sopInstanceUid = map.GetValue(DICOM_TAG_SOP_INSTANCE_UID).GetContent(); |
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1243 } |
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1244 currentType = ResourceType_Series; |
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1245 break; |
231 | 1246 |
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1247 default: |
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1248 throw OrthancException(ErrorCode_InternalError); |
231 | 1249 } |
1250 | |
1251 // If we have not reached the Patient level, find the parent of | |
1252 // the current resource | |
1253 if (!done) | |
1254 { | |
1247 | 1255 bool ok = db_.LookupParent(currentId, currentId); |
375
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1256 assert(ok); |
231 | 1257 } |
1258 } | |
1259 | |
1246 | 1260 ExportedResource resource(-1, |
1261 type, | |
1262 publicId, | |
1263 remoteModality, | |
1264 Toolbox::GetNowIsoString(), | |
1265 patientId, | |
1266 studyInstanceUid, | |
1267 seriesInstanceUid, | |
1268 sopInstanceUid); | |
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1269 |
1247 | 1270 db_.LogExportedResource(resource); |
1310
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|
1271 transaction.Commit(0); |
231 | 1272 } |
1273 | |
1274 | |
1247 | 1275 void ServerIndex::GetExportedResources(Json::Value& target, |
231 | 1276 int64_t since, |
1277 unsigned int maxResults) | |
1278 { | |
1244 | 1279 std::list<ExportedResource> exported; |
1280 bool done; | |
1281 | |
1282 { | |
1283 boost::mutex::scoped_lock lock(mutex_); | |
1247 | 1284 db_.GetExportedResources(exported, done, since, maxResults); |
1244 | 1285 } |
1286 | |
1287 FormatLog(target, exported, "Exports", done, since); | |
231 | 1288 } |
237
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1289 |
1244 | 1290 |
1247 | 1291 void ServerIndex::GetLastExportedResource(Json::Value& target) |
237
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1292 { |
1244 | 1293 std::list<ExportedResource> exported; |
1294 | |
1295 { | |
1296 boost::mutex::scoped_lock lock(mutex_); | |
1247 | 1297 db_.GetLastExportedResource(exported); |
1244 | 1298 } |
1299 | |
1300 FormatLog(target, exported, "Exports", true, 0); | |
237
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1301 } |
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1302 |
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1303 |
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1304 bool ServerIndex::IsRecyclingNeeded(uint64_t instanceSize) |
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1305 { |
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1306 if (maximumStorageSize_ != 0) |
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1307 { |
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1308 uint64_t currentSize = currentStorageSize_ - listener_->GetSizeOfFilesToRemove(); |
1247 | 1309 assert(db_.GetTotalCompressedSize() == currentSize); |
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1310 |
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1311 if (currentSize + instanceSize > maximumStorageSize_) |
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1312 { |
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1313 return true; |
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1314 } |
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1315 } |
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1316 |
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1317 if (maximumPatients_ != 0) |
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1318 { |
1247 | 1319 uint64_t patientCount = db_.GetResourceCount(ResourceType_Patient); |
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1320 if (patientCount > maximumPatients_) |
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1321 { |
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1322 return true; |
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1323 } |
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1324 } |
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1325 |
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1326 return false; |
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1327 } |
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1328 |
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1329 |
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1330 void ServerIndex::Recycle(uint64_t instanceSize, |
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1331 const std::string& newPatientId) |
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1332 { |
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1333 if (!IsRecyclingNeeded(instanceSize)) |
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1334 { |
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1335 return; |
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1336 } |
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1337 |
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1338 // Check whether other DICOM instances from this patient are |
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1339 // already stored |
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1340 int64_t patientToAvoid; |
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1341 ResourceType type; |
1294 | 1342 bool hasPatientToAvoid = db_.LookupResource(patientToAvoid, type, newPatientId); |
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1343 |
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1344 if (hasPatientToAvoid && type != ResourceType_Patient) |
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1345 { |
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1346 throw OrthancException(ErrorCode_InternalError); |
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1347 } |
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1348 |
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1349 // Iteratively select patient to remove until there is enough |
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1350 // space in the DICOM store |
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1351 int64_t patientToRecycle; |
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1352 while (true) |
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1353 { |
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1354 // If other instances of this patient are already in the store, |
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1355 // we must avoid to recycle them |
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1356 bool ok = hasPatientToAvoid ? |
1247 | 1357 db_.SelectPatientToRecycle(patientToRecycle, patientToAvoid) : |
1358 db_.SelectPatientToRecycle(patientToRecycle); | |
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1359 |
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1360 if (!ok) |
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1361 { |
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1362 throw OrthancException(ErrorCode_FullStorage); |
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1363 } |
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1364 |
1331
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1365 VLOG(1) << "Recycling one patient"; |
1247 | 1366 db_.DeleteResource(patientToRecycle); |
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1367 |
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1368 if (!IsRecyclingNeeded(instanceSize)) |
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1369 { |
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1370 // OK, we're done |
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1371 break; |
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1372 } |
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1373 } |
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1374 } |
269
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1375 |
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1376 void ServerIndex::SetMaximumPatientCount(unsigned int count) |
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1377 { |
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1378 boost::mutex::scoped_lock lock(mutex_); |
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1379 maximumPatients_ = count; |
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1380 |
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1381 if (count == 0) |
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1382 { |
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1383 LOG(WARNING) << "No limit on the number of stored patients"; |
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1384 } |
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1385 else |
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1386 { |
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1387 LOG(WARNING) << "At most " << count << " patients will be stored"; |
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1388 } |
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1389 |
269
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1390 StandaloneRecycling(); |
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1391 } |
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1392 |
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1393 void ServerIndex::SetMaximumStorageSize(uint64_t size) |
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1394 { |
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1395 boost::mutex::scoped_lock lock(mutex_); |
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1396 maximumStorageSize_ = size; |
270
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1397 |
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1398 if (size == 0) |
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1399 { |
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1400 LOG(WARNING) << "No limit on the size of the storage area"; |
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1401 } |
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1402 else |
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1403 { |
440
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|
1404 LOG(WARNING) << "At most " << (size / MEGA_BYTES) << "MB will be used for the storage area"; |
270
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1405 } |
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1406 |
269
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1407 StandaloneRecycling(); |
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1408 } |
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1409 |
272
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1410 void ServerIndex::StandaloneRecycling() |
269
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1411 { |
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1412 // WARNING: No mutex here, do not include this as a public method |
278
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1413 Transaction t(*this); |
269
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1414 Recycle(0, ""); |
278
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1415 t.Commit(0); |
269
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1416 } |
272
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1417 |
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1418 |
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1419 bool ServerIndex::IsProtectedPatient(const std::string& publicId) |
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1420 { |
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1421 boost::mutex::scoped_lock lock(mutex_); |
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1422 |
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1423 // Lookup for the requested resource |
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1424 int64_t id; |
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1425 ResourceType type; |
1294 | 1426 if (!db_.LookupResource(id, type, publicId) || |
272
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1427 type != ResourceType_Patient) |
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1428 { |
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1429 throw OrthancException(ErrorCode_ParameterOutOfRange); |
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1430 } |
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1431 |
1247 | 1432 return db_.IsProtectedPatient(id); |
272
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1433 } |
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1434 |
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1435 |
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1436 void ServerIndex::SetProtectedPatient(const std::string& publicId, |
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1437 bool isProtected) |
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1438 { |
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1439 boost::mutex::scoped_lock lock(mutex_); |
1310
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1440 Transaction transaction(*this); |
272
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1441 |
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1442 // Lookup for the requested resource |
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1443 int64_t id; |
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1444 ResourceType type; |
1294 | 1445 if (!db_.LookupResource(id, type, publicId) || |
272
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1446 type != ResourceType_Patient) |
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1447 { |
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1448 throw OrthancException(ErrorCode_ParameterOutOfRange); |
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1449 } |
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1450 |
1247 | 1451 db_.SetProtectedPatient(id, isProtected); |
1310
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1452 transaction.Commit(0); |
272
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1453 |
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1454 if (isProtected) |
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1455 LOG(INFO) << "Patient " << publicId << " has been protected"; |
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1456 else |
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1457 LOG(INFO) << "Patient " << publicId << " has been unprotected"; |
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1458 } |
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1459 |
304 | 1460 |
714
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1461 void ServerIndex::GetChildren(std::list<std::string>& result, |
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1462 const std::string& publicId) |
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1463 { |
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1464 result.clear(); |
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1465 |
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1466 boost::mutex::scoped_lock lock(mutex_); |
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1467 |
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1468 ResourceType type; |
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1469 int64_t resource; |
1294 | 1470 if (!db_.LookupResource(resource, type, publicId)) |
714
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1471 { |
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1472 throw OrthancException(ErrorCode_UnknownResource); |
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1473 } |
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1474 |
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1475 if (type == ResourceType_Instance) |
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1476 { |
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1477 // An instance cannot have a child |
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1478 throw OrthancException(ErrorCode_BadParameterType); |
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1479 } |
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1480 |
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1481 std::list<int64_t> tmp; |
1247 | 1482 db_.GetChildrenInternalId(tmp, resource); |
714
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1483 |
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1484 for (std::list<int64_t>::const_iterator |
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1485 it = tmp.begin(); it != tmp.end(); ++it) |
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1486 { |
1247 | 1487 result.push_back(db_.GetPublicId(*it)); |
714
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1488 } |
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1489 } |
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1490 |
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1491 |
304 | 1492 void ServerIndex::GetChildInstances(std::list<std::string>& result, |
1493 const std::string& publicId) | |
1494 { | |
1495 result.clear(); | |
1496 | |
1497 boost::mutex::scoped_lock lock(mutex_); | |
1498 | |
1499 ResourceType type; | |
1500 int64_t top; | |
1294 | 1501 if (!db_.LookupResource(top, type, publicId)) |
304 | 1502 { |
1503 throw OrthancException(ErrorCode_UnknownResource); | |
1504 } | |
1505 | |
1506 if (type == ResourceType_Instance) | |
1507 { | |
1508 // The resource is already an instance: Do not go down the hierarchy | |
1509 result.push_back(publicId); | |
1510 return; | |
1511 } | |
1512 | |
1513 std::stack<int64_t> toExplore; | |
1514 toExplore.push(top); | |
1515 | |
1516 std::list<int64_t> tmp; | |
1517 | |
1518 while (!toExplore.empty()) | |
1519 { | |
1520 // Get the internal ID of the current resource | |
1521 int64_t resource = toExplore.top(); | |
1522 toExplore.pop(); | |
1523 | |
1247 | 1524 if (db_.GetResourceType(resource) == ResourceType_Instance) |
304 | 1525 { |
1247 | 1526 result.push_back(db_.GetPublicId(resource)); |
304 | 1527 } |
1528 else | |
1529 { | |
1530 // Tag all the children of this resource as to be explored | |
1247 | 1531 db_.GetChildrenInternalId(tmp, resource); |
304 | 1532 for (std::list<int64_t>::const_iterator |
656 | 1533 it = tmp.begin(); it != tmp.end(); ++it) |
304 | 1534 { |
1535 toExplore.push(*it); | |
1536 } | |
1537 } | |
1538 } | |
1539 } | |
1540 | |
306
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1541 |
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1542 void ServerIndex::SetMetadata(const std::string& publicId, |
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1543 MetadataType type, |
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1544 const std::string& value) |
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1545 { |
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1546 boost::mutex::scoped_lock lock(mutex_); |
1773
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1547 Transaction t(*this); |
306
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1548 |
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1549 ResourceType rtype; |
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1550 int64_t id; |
1294 | 1551 if (!db_.LookupResource(id, rtype, publicId)) |
306
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1552 { |
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1553 throw OrthancException(ErrorCode_UnknownResource); |
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1554 } |
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1555 |
1247 | 1556 db_.SetMetadata(id, type, value); |
1773
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1557 |
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1558 if (IsUserMetadata(type)) |
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1559 { |
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1560 LogChange(id, ChangeType_UpdatedMetadata, rtype, publicId); |
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1561 } |
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1562 |
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1563 t.Commit(0); |
306
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1564 } |
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1565 |
438 | 1566 |
1567 void ServerIndex::DeleteMetadata(const std::string& publicId, | |
1568 MetadataType type) | |
1569 { | |
1570 boost::mutex::scoped_lock lock(mutex_); | |
1773
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1571 Transaction t(*this); |
438 | 1572 |
1573 ResourceType rtype; | |
1574 int64_t id; | |
1294 | 1575 if (!db_.LookupResource(id, rtype, publicId)) |
438 | 1576 { |
1577 throw OrthancException(ErrorCode_UnknownResource); | |
1578 } | |
1579 | |
1247 | 1580 db_.DeleteMetadata(id, type); |
1773
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1581 |
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1582 if (IsUserMetadata(type)) |
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1583 { |
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1584 LogChange(id, ChangeType_UpdatedMetadata, rtype, publicId); |
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1585 } |
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1586 |
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1587 t.Commit(0); |
438 | 1588 } |
1589 | |
1590 | |
306
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1591 bool ServerIndex::LookupMetadata(std::string& target, |
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1592 const std::string& publicId, |
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1593 MetadataType type) |
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1594 { |
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1595 boost::mutex::scoped_lock lock(mutex_); |
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1596 |
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1597 ResourceType rtype; |
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1598 int64_t id; |
1294 | 1599 if (!db_.LookupResource(id, rtype, publicId)) |
306
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1600 { |
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1601 throw OrthancException(ErrorCode_UnknownResource); |
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1602 } |
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1603 |
1247 | 1604 return db_.LookupMetadata(target, id, type); |
306
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1605 } |
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1606 |
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1607 |
739 | 1608 void ServerIndex::ListAvailableMetadata(std::list<MetadataType>& target, |
436
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1609 const std::string& publicId) |
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1610 { |
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1611 boost::mutex::scoped_lock lock(mutex_); |
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1612 |
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1613 ResourceType rtype; |
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1614 int64_t id; |
1294 | 1615 if (!db_.LookupResource(id, rtype, publicId)) |
436
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1616 { |
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1617 throw OrthancException(ErrorCode_UnknownResource); |
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1618 } |
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1619 |
1247 | 1620 db_.ListAvailableMetadata(target, id); |
436
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1621 } |
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1622 |
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1623 |
697
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1624 void ServerIndex::ListAvailableAttachments(std::list<FileContentType>& target, |
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1625 const std::string& publicId, |
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1626 ResourceType expectedType) |
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1627 { |
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1628 boost::mutex::scoped_lock lock(mutex_); |
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1629 |
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1630 ResourceType type; |
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1631 int64_t id; |
1294 | 1632 if (!db_.LookupResource(id, type, publicId) || |
697
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1633 expectedType != type) |
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1634 { |
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1635 throw OrthancException(ErrorCode_UnknownResource); |
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1636 } |
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1637 |
1247 | 1638 db_.ListAvailableAttachments(target, id); |
697
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1639 } |
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1640 |
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1641 |
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1642 bool ServerIndex::LookupParent(std::string& target, |
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1643 const std::string& publicId) |
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1644 { |
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1645 boost::mutex::scoped_lock lock(mutex_); |
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1646 |
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1647 ResourceType type; |
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1648 int64_t id; |
1294 | 1649 if (!db_.LookupResource(id, type, publicId)) |
306
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1650 { |
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1651 throw OrthancException(ErrorCode_UnknownResource); |
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|
1652 } |
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|
1653 |
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1654 int64_t parentId; |
1247 | 1655 if (db_.LookupParent(parentId, id)) |
306
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1656 { |
1247 | 1657 target = db_.GetPublicId(parentId); |
306
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|
1658 return true; |
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|
1659 } |
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|
1660 else |
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|
1661 { |
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|
1662 return false; |
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|
1663 } |
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|
1664 } |
310 | 1665 |
1666 | |
1667 uint64_t ServerIndex::IncrementGlobalSequence(GlobalProperty sequence) | |
1668 { | |
1669 boost::mutex::scoped_lock lock(mutex_); | |
1310
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|
1670 Transaction transaction(*this); |
311 | 1671 |
1237 | 1672 uint64_t seq = IncrementGlobalSequenceInternal(sequence); |
1310
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|
1673 transaction.Commit(0); |
311 | 1674 |
1675 return seq; | |
310 | 1676 } |
315 | 1677 |
1678 | |
1679 | |
1680 void ServerIndex::LogChange(ChangeType changeType, | |
1681 const std::string& publicId) | |
1682 { | |
1683 boost::mutex::scoped_lock lock(mutex_); | |
1310
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|
1684 Transaction transaction(*this); |
315 | 1685 |
1686 int64_t id; | |
1687 ResourceType type; | |
1294 | 1688 if (!db_.LookupResource(id, type, publicId)) |
315 | 1689 { |
1690 throw OrthancException(ErrorCode_UnknownResource); | |
1691 } | |
1692 | |
1237 | 1693 LogChange(id, changeType, type, publicId); |
1310
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|
1694 transaction.Commit(0); |
315 | 1695 } |
413
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|
1696 |
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diff
changeset
|
1697 |
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|
1698 void ServerIndex::DeleteChanges() |
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|
1699 { |
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|
1700 boost::mutex::scoped_lock lock(mutex_); |
1286 | 1701 db_.ClearChanges(); |
413
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|
1702 } |
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|
1703 |
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|
1704 void ServerIndex::DeleteExportedResources() |
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1705 { |
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|
1706 boost::mutex::scoped_lock lock(mutex_); |
1286 | 1707 db_.ClearExportedResources(); |
413
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1708 } |
440
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1709 |
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1710 |
646 | 1711 void ServerIndex::GetStatisticsInternal(/* out */ uint64_t& compressedSize, |
1712 /* out */ uint64_t& uncompressedSize, | |
1713 /* out */ unsigned int& countStudies, | |
1714 /* out */ unsigned int& countSeries, | |
1715 /* out */ unsigned int& countInstances, | |
1716 /* in */ int64_t id, | |
1717 /* in */ ResourceType type) | |
440
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|
1718 { |
646 | 1719 std::stack<int64_t> toExplore; |
1720 toExplore.push(id); | |
440
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1721 |
646 | 1722 countInstances = 0; |
1723 countSeries = 0; | |
1724 countStudies = 0; | |
1725 compressedSize = 0; | |
1726 uncompressedSize = 0; | |
440
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|
1727 |
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|
1728 while (!toExplore.empty()) |
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1729 { |
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1730 // Get the internal ID of the current resource |
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1731 int64_t resource = toExplore.top(); |
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1732 toExplore.pop(); |
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1733 |
1247 | 1734 ResourceType thisType = db_.GetResourceType(resource); |
440
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|
1735 |
702
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|
1736 std::list<FileContentType> f; |
1247 | 1737 db_.ListAvailableAttachments(f, resource); |
702
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|
1738 |
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|
1739 for (std::list<FileContentType>::const_iterator |
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1740 it = f.begin(); it != f.end(); ++it) |
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|
1741 { |
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|
1742 FileInfo attachment; |
1247 | 1743 if (db_.LookupAttachment(attachment, resource, *it)) |
702
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|
1744 { |
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1745 compressedSize += attachment.GetCompressedSize(); |
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1746 uncompressedSize += attachment.GetUncompressedSize(); |
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|
1747 } |
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|
1748 } |
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|
1749 |
440
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|
1750 if (thisType == ResourceType_Instance) |
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1751 { |
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|
1752 countInstances++; |
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1753 } |
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1754 else |
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diff
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|
1755 { |
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|
1756 switch (thisType) |
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|
1757 { |
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|
1758 case ResourceType_Study: |
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1759 countStudies++; |
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|
1760 break; |
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|
1761 |
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|
1762 case ResourceType_Series: |
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|
1763 countSeries++; |
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diff
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|
1764 break; |
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diff
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|
1765 |
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diff
changeset
|
1766 default: |
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diff
changeset
|
1767 break; |
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diff
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|
1768 } |
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diff
changeset
|
1769 |
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|
1770 // Tag all the children of this resource as to be explored |
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|
1771 std::list<int64_t> tmp; |
1247 | 1772 db_.GetChildrenInternalId(tmp, resource); |
440
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|
1773 for (std::list<int64_t>::const_iterator |
656 | 1774 it = tmp.begin(); it != tmp.end(); ++it) |
440
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diff
changeset
|
1775 { |
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|
1776 toExplore.push(*it); |
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|
1777 } |
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|
1778 } |
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1779 } |
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1780 |
646 | 1781 if (countStudies == 0) |
1782 { | |
1783 countStudies = 1; | |
1784 } | |
1785 | |
1786 if (countSeries == 0) | |
1787 { | |
1788 countSeries = 1; | |
1789 } | |
1790 } | |
1791 | |
1792 | |
1793 | |
1794 void ServerIndex::GetStatistics(Json::Value& target, | |
1795 const std::string& publicId) | |
1796 { | |
1797 boost::mutex::scoped_lock lock(mutex_); | |
1798 | |
1799 ResourceType type; | |
1800 int64_t top; | |
1294 | 1801 if (!db_.LookupResource(top, type, publicId)) |
646 | 1802 { |
1803 throw OrthancException(ErrorCode_UnknownResource); | |
1804 } | |
1805 | |
1806 uint64_t uncompressedSize; | |
1807 uint64_t compressedSize; | |
1808 unsigned int countStudies; | |
1809 unsigned int countSeries; | |
1810 unsigned int countInstances; | |
1811 GetStatisticsInternal(compressedSize, uncompressedSize, countStudies, | |
1812 countSeries, countInstances, top, type); | |
1813 | |
440
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1814 target = Json::objectValue; |
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1815 target["DiskSize"] = boost::lexical_cast<std::string>(compressedSize); |
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1816 target["DiskSizeMB"] = static_cast<unsigned int>(compressedSize / MEGA_BYTES); |
440
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1817 target["UncompressedSize"] = boost::lexical_cast<std::string>(uncompressedSize); |
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1818 target["UncompressedSizeMB"] = static_cast<unsigned int>(uncompressedSize / MEGA_BYTES); |
440
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1819 |
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1820 switch (type) |
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1821 { |
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1822 // Do NOT add "break" below this point! |
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1823 case ResourceType_Patient: |
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1824 target["CountStudies"] = countStudies; |
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1825 |
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1826 case ResourceType_Study: |
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1827 target["CountSeries"] = countSeries; |
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1828 |
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1829 case ResourceType_Series: |
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1830 target["CountInstances"] = countInstances; |
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1831 |
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1832 case ResourceType_Instance: |
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1833 default: |
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1834 break; |
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1835 } |
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1836 } |
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1837 |
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1838 |
646 | 1839 void ServerIndex::GetStatistics(/* out */ uint64_t& compressedSize, |
1840 /* out */ uint64_t& uncompressedSize, | |
1841 /* out */ unsigned int& countStudies, | |
1842 /* out */ unsigned int& countSeries, | |
1843 /* out */ unsigned int& countInstances, | |
1844 const std::string& publicId) | |
1845 { | |
1846 boost::mutex::scoped_lock lock(mutex_); | |
1847 | |
1848 ResourceType type; | |
1849 int64_t top; | |
1294 | 1850 if (!db_.LookupResource(top, type, publicId)) |
646 | 1851 { |
1852 throw OrthancException(ErrorCode_UnknownResource); | |
1853 } | |
1854 | |
1855 GetStatisticsInternal(compressedSize, uncompressedSize, countStudies, | |
1856 countSeries, countInstances, top, type); | |
1857 } | |
1858 | |
1859 | |
511
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1860 void ServerIndex::UnstableResourcesMonitorThread(ServerIndex* that) |
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1861 { |
2069
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1862 int stableAge = Configuration::GetGlobalUnsignedIntegerParameter("StableAge", 60); |
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1863 if (stableAge <= 0) |
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1864 { |
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1865 stableAge = 60; |
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1866 } |
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1867 |
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1868 LOG(INFO) << "Starting the monitor for stable resources (stable age = " << stableAge << ")"; |
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1869 |
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1870 while (!that->done_) |
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1871 { |
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1872 // Check for stable resources each second |
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1873 boost::this_thread::sleep(boost::posix_time::seconds(1)); |
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1874 |
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1875 boost::mutex::scoped_lock lock(that->mutex_); |
513 | 1876 |
511
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1877 while (!that->unstableResources_.IsEmpty() && |
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1878 that->unstableResources_.GetOldestPayload().GetAge() > static_cast<unsigned int>(stableAge)) |
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1879 { |
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1880 // This DICOM resource has not received any new instance for |
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1881 // some time. It can be considered as stable. |
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1882 |
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1883 UnstableResourcePayload payload; |
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1884 int64_t id = that->unstableResources_.RemoveOldest(payload); |
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1885 |
513 | 1886 // Ensure that the resource is still existing before logging the change |
1247 | 1887 if (that->db_.IsExistingResource(id)) |
511
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1888 { |
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1889 switch (payload.GetResourceType()) |
513 | 1890 { |
1177
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1891 case ResourceType_Patient: |
1237 | 1892 that->LogChange(id, ChangeType_StablePatient, ResourceType_Patient, payload.GetPublicId()); |
513 | 1893 break; |
511
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1894 |
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1895 case ResourceType_Study: |
1237 | 1896 that->LogChange(id, ChangeType_StableStudy, ResourceType_Study, payload.GetPublicId()); |
513 | 1897 break; |
511
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1898 |
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1899 case ResourceType_Series: |
1237 | 1900 that->LogChange(id, ChangeType_StableSeries, ResourceType_Series, payload.GetPublicId()); |
513 | 1901 break; |
1902 | |
1903 default: | |
1904 throw OrthancException(ErrorCode_InternalError); | |
1905 } | |
1906 | |
1907 //LOG(INFO) << "Stable resource: " << EnumerationToString(payload.type_) << " " << id; | |
511
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1908 } |
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1909 } |
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1910 } |
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1911 |
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1912 LOG(INFO) << "Closing the monitor thread for stable resources"; |
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1913 } |
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1914 |
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1915 |
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1916 void ServerIndex::MarkAsUnstable(int64_t id, |
1177
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1917 Orthanc::ResourceType type, |
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1918 const std::string& publicId) |
511
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1919 { |
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1920 // WARNING: Before calling this method, "mutex_" must be locked. |
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1921 |
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1922 assert(type == Orthanc::ResourceType_Patient || |
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1923 type == Orthanc::ResourceType_Study || |
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1924 type == Orthanc::ResourceType_Series); |
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1925 |
1177
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1926 UnstableResourcePayload payload(type, publicId); |
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1927 unstableResources_.AddOrMakeMostRecent(id, payload); |
511
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1928 //LOG(INFO) << "Unstable resource: " << EnumerationToString(type) << " " << id; |
1189
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1929 |
1237 | 1930 LogChange(id, ChangeType_NewChildInstance, type, publicId); |
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1931 } |
521 | 1932 |
1933 | |
1934 | |
1728
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1935 void ServerIndex::LookupIdentifierExact(std::list<std::string>& result, |
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1936 ResourceType level, |
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1937 const DicomTag& tag, |
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1938 const std::string& value) |
615 | 1939 { |
1727 | 1940 assert((level == ResourceType_Patient && tag == DICOM_TAG_PATIENT_ID) || |
1941 (level == ResourceType_Study && tag == DICOM_TAG_STUDY_INSTANCE_UID) || | |
1942 (level == ResourceType_Study && tag == DICOM_TAG_ACCESSION_NUMBER) || | |
1943 (level == ResourceType_Series && tag == DICOM_TAG_SERIES_INSTANCE_UID) || | |
1944 (level == ResourceType_Instance && tag == DICOM_TAG_SOP_INSTANCE_UID)); | |
1725 | 1945 |
615 | 1946 result.clear(); |
1947 | |
1948 boost::mutex::scoped_lock lock(mutex_); | |
1949 | |
1746 | 1950 LookupIdentifierQuery query(level); |
1951 query.AddConstraint(tag, IdentifierConstraintType_Equal, value); | |
1952 query.Apply(result, db_); | |
615 | 1953 } |
1954 | |
1955 | |
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1956 StoreStatus ServerIndex::AddAttachment(const FileInfo& attachment, |
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1957 const std::string& publicId) |
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1958 { |
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1959 boost::mutex::scoped_lock lock(mutex_); |
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1960 |
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1961 Transaction t(*this); |
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1962 |
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1963 ResourceType resourceType; |
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1964 int64_t resourceId; |
1294 | 1965 if (!db_.LookupResource(resourceId, resourceType, publicId)) |
699
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1966 { |
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1967 return StoreStatus_Failure; // Inexistent resource |
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1968 } |
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1969 |
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1970 // Remove possible previous attachment |
1247 | 1971 db_.DeleteAttachment(resourceId, attachment.GetContentType()); |
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1972 |
704
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1973 // Locate the patient of the target resource |
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1974 int64_t patientId = resourceId; |
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1975 for (;;) |
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1976 { |
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1977 int64_t parent; |
1247 | 1978 if (db_.LookupParent(parent, patientId)) |
704
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1979 { |
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1980 // We have not reached the patient level yet |
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1981 patientId = parent; |
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1982 } |
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1983 else |
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1984 { |
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1985 // We have reached the patient level |
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1986 break; |
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1987 } |
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1988 } |
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1989 |
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|
1990 // Possibly apply the recycling mechanism while preserving this patient |
1247 | 1991 assert(db_.GetResourceType(patientId) == ResourceType_Patient); |
1992 Recycle(attachment.GetCompressedSize(), db_.GetPublicId(patientId)); | |
704
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1993 |
1247 | 1994 db_.AddAttachment(resourceId, attachment); |
699
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1995 |
1773
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1996 if (IsUserContentType(attachment.GetContentType())) |
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1997 { |
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|
1998 LogChange(resourceId, ChangeType_UpdatedAttachment, resourceType, publicId); |
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1999 } |
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2000 |
699
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
2001 t.Commit(attachment.GetCompressedSize()); |
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add attachments to resources
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
2002 |
2929e17f8447
add attachments to resources
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
2003 return StoreStatus_Success; |
2929e17f8447
add attachments to resources
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
2004 } |
2929e17f8447
add attachments to resources
Sebastien Jodogne <s.jodogne@gmail.com>
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697
diff
changeset
|
2005 |
702
7592a48e97e4
delete custom attachment
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
701
diff
changeset
|
2006 |
7592a48e97e4
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diff
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|
2007 void ServerIndex::DeleteAttachment(const std::string& publicId, |
7592a48e97e4
delete custom attachment
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diff
changeset
|
2008 FileContentType type) |
7592a48e97e4
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diff
changeset
|
2009 { |
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delete custom attachment
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
2010 boost::mutex::scoped_lock lock(mutex_); |
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delete custom attachment
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parents:
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diff
changeset
|
2011 Transaction t(*this); |
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parents:
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diff
changeset
|
2012 |
7592a48e97e4
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diff
changeset
|
2013 ResourceType rtype; |
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delete custom attachment
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parents:
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diff
changeset
|
2014 int64_t id; |
1294 | 2015 if (!db_.LookupResource(id, rtype, publicId)) |
702
7592a48e97e4
delete custom attachment
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2016 { |
7592a48e97e4
delete custom attachment
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
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|
2017 throw OrthancException(ErrorCode_UnknownResource); |
7592a48e97e4
delete custom attachment
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parents:
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diff
changeset
|
2018 } |
7592a48e97e4
delete custom attachment
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
701
diff
changeset
|
2019 |
1247 | 2020 db_.DeleteAttachment(id, type); |
702
7592a48e97e4
delete custom attachment
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
701
diff
changeset
|
2021 |
1773
613df4362575
New UpdatedAttachment and UpdatedMetadata events in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1757
diff
changeset
|
2022 if (IsUserContentType(type)) |
613df4362575
New UpdatedAttachment and UpdatedMetadata events in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1757
diff
changeset
|
2023 { |
613df4362575
New UpdatedAttachment and UpdatedMetadata events in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1757
diff
changeset
|
2024 LogChange(id, ChangeType_UpdatedAttachment, rtype, publicId); |
613df4362575
New UpdatedAttachment and UpdatedMetadata events in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1757
diff
changeset
|
2025 } |
613df4362575
New UpdatedAttachment and UpdatedMetadata events in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1757
diff
changeset
|
2026 |
702
7592a48e97e4
delete custom attachment
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
701
diff
changeset
|
2027 t.Commit(0); |
7592a48e97e4
delete custom attachment
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
701
diff
changeset
|
2028 } |
7592a48e97e4
delete custom attachment
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
701
diff
changeset
|
2029 |
7592a48e97e4
delete custom attachment
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
701
diff
changeset
|
2030 |
1002
b067017a8a5b
anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
831
diff
changeset
|
2031 bool ServerIndex::GetMetadata(Json::Value& target, |
b067017a8a5b
anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
831
diff
changeset
|
2032 const std::string& publicId) |
b067017a8a5b
anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
2033 { |
b067017a8a5b
anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
831
diff
changeset
|
2034 boost::mutex::scoped_lock lock(mutex_); |
b067017a8a5b
anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
831
diff
changeset
|
2035 |
b067017a8a5b
anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
831
diff
changeset
|
2036 target = Json::objectValue; |
b067017a8a5b
anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
831
diff
changeset
|
2037 |
b067017a8a5b
anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
831
diff
changeset
|
2038 ResourceType type; |
b067017a8a5b
anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
831
diff
changeset
|
2039 int64_t id; |
1294 | 2040 if (!db_.LookupResource(id, type, publicId)) |
1002
b067017a8a5b
anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
831
diff
changeset
|
2041 { |
b067017a8a5b
anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2042 return false; |
b067017a8a5b
anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2043 } |
b067017a8a5b
anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2044 |
b067017a8a5b
anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
831
diff
changeset
|
2045 std::list<MetadataType> metadata; |
1247 | 2046 db_.ListAvailableMetadata(metadata, id); |
1002
b067017a8a5b
anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
831
diff
changeset
|
2047 |
b067017a8a5b
anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
831
diff
changeset
|
2048 for (std::list<MetadataType>::const_iterator |
1304 | 2049 it = metadata.begin(); it != metadata.end(); ++it) |
1002
b067017a8a5b
anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
831
diff
changeset
|
2050 { |
b067017a8a5b
anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2051 std::string key = EnumerationToString(*it); |
1238 | 2052 |
2053 std::string value; | |
1247 | 2054 if (!db_.LookupMetadata(value, id, *it)) |
1238 | 2055 { |
2056 value.clear(); | |
2057 } | |
2058 | |
1002
b067017a8a5b
anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
831
diff
changeset
|
2059 target[key] = value; |
b067017a8a5b
anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
831
diff
changeset
|
2060 } |
b067017a8a5b
anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
831
diff
changeset
|
2061 |
b067017a8a5b
anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
831
diff
changeset
|
2062 return true; |
b067017a8a5b
anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
831
diff
changeset
|
2063 } |
1218
efece308018e
report database version in /system
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1198
diff
changeset
|
2064 |
efece308018e
report database version in /system
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1198
diff
changeset
|
2065 |
1249
40725595aaf0
Plugins can get/set global properties to save their configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1247
diff
changeset
|
2066 void ServerIndex::SetGlobalProperty(GlobalProperty property, |
40725595aaf0
Plugins can get/set global properties to save their configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1247
diff
changeset
|
2067 const std::string& value) |
40725595aaf0
Plugins can get/set global properties to save their configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1247
diff
changeset
|
2068 { |
40725595aaf0
Plugins can get/set global properties to save their configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1247
diff
changeset
|
2069 boost::mutex::scoped_lock lock(mutex_); |
40725595aaf0
Plugins can get/set global properties to save their configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1247
diff
changeset
|
2070 db_.SetGlobalProperty(property, value); |
40725595aaf0
Plugins can get/set global properties to save their configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1247
diff
changeset
|
2071 } |
40725595aaf0
Plugins can get/set global properties to save their configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1247
diff
changeset
|
2072 |
40725595aaf0
Plugins can get/set global properties to save their configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1247
diff
changeset
|
2073 |
1218
efece308018e
report database version in /system
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1198
diff
changeset
|
2074 std::string ServerIndex::GetGlobalProperty(GlobalProperty property, |
efece308018e
report database version in /system
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1198
diff
changeset
|
2075 const std::string& defaultValue) |
efece308018e
report database version in /system
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1198
diff
changeset
|
2076 { |
efece308018e
report database version in /system
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1198
diff
changeset
|
2077 boost::mutex::scoped_lock lock(mutex_); |
1239 | 2078 |
2079 std::string value; | |
1247 | 2080 if (db_.LookupGlobalProperty(value, property)) |
1239 | 2081 { |
2082 return value; | |
2083 } | |
2084 else | |
2085 { | |
2086 return defaultValue; | |
2087 } | |
1218
efece308018e
report database version in /system
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1198
diff
changeset
|
2088 } |
efece308018e
report database version in /system
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1198
diff
changeset
|
2089 |
1352 | 2090 |
2091 bool ServerIndex::GetMainDicomTags(DicomMap& result, | |
2092 const std::string& publicId, | |
1677
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1676
diff
changeset
|
2093 ResourceType expectedType, |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1676
diff
changeset
|
2094 ResourceType levelOfInterest) |
1352 | 2095 { |
1677
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1676
diff
changeset
|
2096 // Yes, the following test could be shortened, but we wish to make it as clear as possible |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1676
diff
changeset
|
2097 if (!(expectedType == ResourceType_Patient && levelOfInterest == ResourceType_Patient) && |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1676
diff
changeset
|
2098 !(expectedType == ResourceType_Study && levelOfInterest == ResourceType_Patient) && |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1676
diff
changeset
|
2099 !(expectedType == ResourceType_Study && levelOfInterest == ResourceType_Study) && |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1676
diff
changeset
|
2100 !(expectedType == ResourceType_Series && levelOfInterest == ResourceType_Series) && |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1676
diff
changeset
|
2101 !(expectedType == ResourceType_Instance && levelOfInterest == ResourceType_Instance)) |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1676
diff
changeset
|
2102 { |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1676
diff
changeset
|
2103 throw OrthancException(ErrorCode_ParameterOutOfRange); |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1676
diff
changeset
|
2104 } |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1676
diff
changeset
|
2105 |
1352 | 2106 result.Clear(); |
2107 | |
2108 boost::mutex::scoped_lock lock(mutex_); | |
2109 | |
2110 // Lookup for the requested resource | |
2111 int64_t id; | |
2112 ResourceType type; | |
2113 if (!db_.LookupResource(id, type, publicId) || | |
2114 type != expectedType) | |
2115 { | |
2116 return false; | |
2117 } | |
1677
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1676
diff
changeset
|
2118 |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1676
diff
changeset
|
2119 if (type == ResourceType_Study) |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1676
diff
changeset
|
2120 { |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1676
diff
changeset
|
2121 DicomMap tmp; |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1676
diff
changeset
|
2122 db_.GetMainDicomTags(tmp, id); |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1676
diff
changeset
|
2123 |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2124 switch (levelOfInterest) |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2125 { |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1676
diff
changeset
|
2126 case ResourceType_Patient: |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1676
diff
changeset
|
2127 tmp.ExtractPatientInformation(result); |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2128 return true; |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1676
diff
changeset
|
2129 |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1676
diff
changeset
|
2130 case ResourceType_Study: |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1676
diff
changeset
|
2131 tmp.ExtractStudyInformation(result); |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2132 return true; |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2133 |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2134 default: |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1676
diff
changeset
|
2135 throw OrthancException(ErrorCode_InternalError); |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1676
diff
changeset
|
2136 } |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1676
diff
changeset
|
2137 } |
1352 | 2138 else |
2139 { | |
2140 db_.GetMainDicomTags(result, id); | |
2141 return true; | |
2142 } | |
2143 } | |
1555
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1509
diff
changeset
|
2144 |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2145 |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1509
diff
changeset
|
2146 bool ServerIndex::LookupResourceType(ResourceType& type, |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1509
diff
changeset
|
2147 const std::string& publicId) |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2148 { |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1509
diff
changeset
|
2149 boost::mutex::scoped_lock lock(mutex_); |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1509
diff
changeset
|
2150 |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1509
diff
changeset
|
2151 int64_t id; |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1509
diff
changeset
|
2152 return db_.LookupResource(id, type, publicId); |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1509
diff
changeset
|
2153 } |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
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2154 |
1668
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2155 |
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2156 unsigned int ServerIndex::GetDatabaseVersion() |
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Sebastien Jodogne <s.jodogne@gmail.com>
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2157 { |
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2158 boost::mutex::scoped_lock lock(mutex_); |
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2159 return db_.GetDatabaseVersion(); |
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2160 } |
1750
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LookupResource implemented
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2161 |
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2162 |
1753 | 2163 void ServerIndex::FindCandidates(std::vector<std::string>& resources, |
2164 std::vector<std::string>& instances, | |
1757
98abb8d7f905
ServerContext::Apply lookup
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2165 const ::Orthanc::LookupResource& lookup) |
1750
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2166 { |
1753 | 2167 boost::mutex::scoped_lock lock(mutex_); |
2168 | |
2169 std::list<int64_t> tmp; | |
2170 lookup.FindCandidates(tmp, db_); | |
2171 | |
2172 resources.resize(tmp.size()); | |
2173 instances.resize(tmp.size()); | |
2174 | |
2175 size_t pos = 0; | |
2176 for (std::list<int64_t>::const_iterator | |
2177 it = tmp.begin(); it != tmp.end(); ++it, pos++) | |
2178 { | |
1754 | 2179 assert(db_.GetResourceType(*it) == lookup.GetLevel()); |
2180 | |
1753 | 2181 int64_t instance; |
2120 | 2182 if (!ServerToolbox::FindOneChildInstance(instance, db_, *it, lookup.GetLevel())) |
1753 | 2183 { |
2184 throw OrthancException(ErrorCode_InternalError); | |
2185 } | |
2186 | |
2187 resources[pos] = db_.GetPublicId(*it); | |
2188 instances[pos] = db_.GetPublicId(instance); | |
2189 } | |
1750
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2190 } |
1898
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2191 |
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2192 |
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2193 bool ServerIndex::LookupParent(std::string& target, |
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2194 const std::string& publicId, |
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2195 ResourceType parentType) |
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2196 { |
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2197 boost::mutex::scoped_lock lock(mutex_); |
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2198 |
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2199 ResourceType type; |
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2200 int64_t id; |
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2201 if (!db_.LookupResource(id, type, publicId)) |
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2202 { |
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2203 throw OrthancException(ErrorCode_UnknownResource); |
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2204 } |
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2205 |
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2206 while (type != parentType) |
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2207 { |
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2208 int64_t parentId; |
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2209 |
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2210 if (type == ResourceType_Patient || // Cannot further go up in hierarchy |
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2211 !db_.LookupParent(parentId, id)) |
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2212 { |
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2213 return false; |
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2214 } |
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2215 |
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2216 id = parentId; |
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2217 type = GetParentResourceType(type); |
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2218 } |
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2219 |
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2220 target = db_.GetPublicId(id); |
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2221 return true; |
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2222 } |
0 | 2223 } |