Mercurial > hg > orthanc
annotate Core/DicomParsing/DicomModification.h @ 3889:56ce23ba93b7 transcoding
PluginDicomTranscoder
| author | Sebastien Jodogne <s.jodogne@gmail.com> |
|---|---|
| date | Tue, 05 May 2020 17:46:28 +0200 |
| parents | 9ccbbd55bc23 |
| children |
| rev | line source |
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| 786 | 1 /** |
| 2 * Orthanc - A Lightweight, RESTful DICOM Store | |
| 1900 | 3 * Copyright (C) 2012-2016 Sebastien Jodogne, Medical Physics |
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4 * Department, University Hospital of Liege, Belgium |
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5 * Copyright (C) 2017-2020 Osimis S.A., Belgium |
| 786 | 6 * |
| 7 * This program is free software: you can redistribute it and/or | |
| 8 * modify it under the terms of the GNU General Public License as | |
| 9 * published by the Free Software Foundation, either version 3 of the | |
| 10 * License, or (at your option) any later version. | |
| 11 * | |
| 12 * In addition, as a special exception, the copyright holders of this | |
| 13 * program give permission to link the code of its release with the | |
| 14 * OpenSSL project's "OpenSSL" library (or with modified versions of it | |
| 15 * that use the same license as the "OpenSSL" library), and distribute | |
| 16 * the linked executables. You must obey the GNU General Public License | |
| 17 * in all respects for all of the code used other than "OpenSSL". If you | |
| 18 * modify file(s) with this exception, you may extend this exception to | |
| 19 * your version of the file(s), but you are not obligated to do so. If | |
| 20 * you do not wish to do so, delete this exception statement from your | |
| 21 * version. If you delete this exception statement from all source files | |
| 22 * in the program, then also delete it here. | |
| 23 * | |
| 24 * This program is distributed in the hope that it will be useful, but | |
| 25 * WITHOUT ANY WARRANTY; without even the implied warranty of | |
| 26 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU | |
| 27 * General Public License for more details. | |
| 28 * | |
| 29 * You should have received a copy of the GNU General Public License | |
| 30 * along with this program. If not, see <http://www.gnu.org/licenses/>. | |
| 31 **/ | |
| 32 | |
| 33 | |
| 34 #pragma once | |
| 35 | |
| 790 | 36 #include "ParsedDicomFile.h" |
| 786 | 37 |
| 38 namespace Orthanc | |
| 39 { | |
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40 class DicomModification : public boost::noncopyable |
| 786 | 41 { |
| 42 /** | |
| 43 * Process: | |
| 44 * (1) Remove private tags | |
| 45 * (2) Remove tags specified by the user | |
| 46 * (3) Replace tags | |
| 47 **/ | |
| 48 | |
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49 public: |
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50 enum TagOperation |
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51 { |
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52 TagOperation_Keep, |
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53 TagOperation_Remove |
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54 }; |
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55 |
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56 class IDicomIdentifierGenerator : public boost::noncopyable |
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57 { |
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58 public: |
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59 virtual ~IDicomIdentifierGenerator() |
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60 { |
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61 } |
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62 |
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63 virtual bool Apply(std::string& target, |
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64 const std::string& sourceIdentifier, |
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65 ResourceType level, |
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66 const DicomMap& sourceDicom) = 0; |
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67 }; |
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68 |
| 786 | 69 private: |
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70 class RelationshipsVisitor; |
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71 |
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72 typedef std::set<DicomTag> SetOfTags; |
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73 typedef std::map<DicomTag, Json::Value*> Replacements; |
| 788 | 74 typedef std::map< std::pair<ResourceType, std::string>, std::string> UidMap; |
| 786 | 75 |
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76 SetOfTags removals_; |
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77 SetOfTags clearings_; |
| 786 | 78 Replacements replacements_; |
| 79 bool removePrivateTags_; | |
| 788 | 80 ResourceType level_; |
| 786 | 81 UidMap uidMap_; |
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82 SetOfTags privateTagsToKeep_; |
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83 bool allowManualIdentifiers_; |
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84 bool keepStudyInstanceUid_; |
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85 bool keepSeriesInstanceUid_; |
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86 bool keepSopInstanceUid_; |
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87 bool updateReferencedRelationships_; |
| 2721 | 88 bool isAnonymization_; |
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89 DicomMap currentSource_; |
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90 std::string privateCreator_; |
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91 |
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92 IDicomIdentifierGenerator* identifierGenerator_; |
| 786 | 93 |
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94 std::string MapDicomIdentifier(const std::string& original, |
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95 ResourceType level); |
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96 |
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97 void RegisterMappedDicomIdentifier(const std::string& original, |
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98 const std::string& mapped, |
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99 ResourceType level); |
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100 |
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101 void MapDicomTags(ParsedDicomFile& dicom, |
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102 ResourceType level); |
| 786 | 103 |
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104 void MarkNotOrthancAnonymization(); |
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105 |
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106 void ClearReplacements(); |
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107 |
| 2323 | 108 bool CancelReplacement(const DicomTag& tag); |
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109 |
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110 void ReplaceInternal(const DicomTag& tag, |
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111 const Json::Value& value); |
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112 |
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113 void SetupAnonymization2008(); |
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114 |
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115 void SetupAnonymization2017c(); |
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116 |
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117 void UnserializeUidMap(ResourceType level, |
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118 const Json::Value& serialized, |
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119 const char* field); |
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120 |
| 786 | 121 public: |
| 122 DicomModification(); | |
| 123 | |
| 2655 | 124 DicomModification(const Json::Value& serialized); |
| 125 | |
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126 ~DicomModification(); |
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127 |
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128 void Keep(const DicomTag& tag); |
| 786 | 129 |
| 130 void Remove(const DicomTag& tag); | |
| 131 | |
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132 // Replace the DICOM tag as a NULL/empty value (e.g. for anonymization) |
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133 void Clear(const DicomTag& tag); |
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134 |
| 786 | 135 bool IsRemoved(const DicomTag& tag) const; |
| 136 | |
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137 bool IsCleared(const DicomTag& tag) const; |
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138 |
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139 // "safeForAnonymization" tells Orthanc that this replacement does |
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140 // not break the anonymization process it implements (for internal use only) |
| 786 | 141 void Replace(const DicomTag& tag, |
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142 const Json::Value& value, // Encoded using UTF-8 |
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143 bool safeForAnonymization); |
| 786 | 144 |
| 145 bool IsReplaced(const DicomTag& tag) const; | |
| 146 | |
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147 const Json::Value& GetReplacement(const DicomTag& tag) const; |
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148 |
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149 std::string GetReplacementAsString(const DicomTag& tag) const; |
| 786 | 150 |
| 151 void SetRemovePrivateTags(bool removed); | |
| 152 | |
| 153 bool ArePrivateTagsRemoved() const | |
| 154 { | |
| 155 return removePrivateTags_; | |
| 156 } | |
| 157 | |
| 788 | 158 void SetLevel(ResourceType level); |
| 786 | 159 |
| 788 | 160 ResourceType GetLevel() const |
| 786 | 161 { |
| 162 return level_; | |
| 163 } | |
| 164 | |
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165 void SetupAnonymization(DicomVersion version); |
| 786 | 166 |
| 167 void Apply(ParsedDicomFile& toModify); | |
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168 |
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169 void SetAllowManualIdentifiers(bool check) |
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170 { |
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171 allowManualIdentifiers_ = check; |
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172 } |
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173 |
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174 bool AreAllowManualIdentifiers() const |
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175 { |
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176 return allowManualIdentifiers_; |
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177 } |
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178 |
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179 void ParseModifyRequest(const Json::Value& request); |
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180 |
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181 void ParseAnonymizationRequest(bool& patientNameReplaced, |
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182 const Json::Value& request); |
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DicomModification::SetDicomIdentifierGenerator()
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183 |
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DicomModification::SetDicomIdentifierGenerator()
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184 void SetDicomIdentifierGenerator(IDicomIdentifierGenerator& generator) |
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185 { |
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186 identifierGenerator_ = &generator; |
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187 } |
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188 |
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189 void Serialize(Json::Value& value) const; |
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Fix issue #140 (Modifying private tags with REST API changes VR from LO to UN) - DANGEROUS COMMIT
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190 |
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Fix issue #168 (Plugins can't read private tags from the configuration file)
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191 void SetPrivateCreator(const std::string& privateCreator) |
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192 { |
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193 privateCreator_ = privateCreator; |
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194 } |
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195 |
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196 const std::string& GetPrivateCreator() |
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197 { |
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198 return privateCreator_; |
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199 } |
| 786 | 200 }; |
| 201 } |