orthanc: OrthancServer/Sources/ServerContext.cpp annotate

annotate OrthancServer/Sources/ServerContext.cpp @ 5365:5653527a2b1d

updated API version to 22

author	Alain Mazy <am@osimis.io>
date	Thu, 20 Jul 2023 11:13:19 +0200
parents	566e8d32bd3a
children	3c8286e5d07b aaf7c49a9ddc 16cbfefa15e9

rev	line source
224 4eb0c7ce86c9 refactoring for store Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	1 /**
4eb0c7ce86c9 refactoring for store Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	2 * Orthanc - A Lightweight, RESTful DICOM Store
1900 b1291df2f780 2016 Sebastien Jodogne <s.jodogne@gmail.com> parents: 1860 diff changeset	3 * Copyright (C) 2012-2016 Sebastien Jodogne, Medical Physics
1288 6e7e5ed91c2d upgrade to year 2015 Sebastien Jodogne <s.jodogne@gmail.com> parents: 1285 diff changeset	4 * Department, University Hospital of Liege, Belgium
5185 0ea402b4d901 upgrade to year 2023 Sebastien Jodogne <s.jodogne@gmail.com> parents: 5184 diff changeset	5 * Copyright (C) 2017-2023 Osimis S.A., Belgium
0ea402b4d901 upgrade to year 2023 Sebastien Jodogne <s.jodogne@gmail.com> parents: 5184 diff changeset	6 * Copyright (C) 2021-2023 Sebastien Jodogne, ICTEAM UCLouvain, Belgium
224 4eb0c7ce86c9 refactoring for store Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	7 *
4eb0c7ce86c9 refactoring for store Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	8 * This program is free software: you can redistribute it and/or
4eb0c7ce86c9 refactoring for store Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	9 * modify it under the terms of the GNU General Public License as
4eb0c7ce86c9 refactoring for store Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	10 * published by the Free Software Foundation, either version 3 of the
4eb0c7ce86c9 refactoring for store Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	11 * License, or (at your option) any later version.
4eb0c7ce86c9 refactoring for store Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	12 *
4eb0c7ce86c9 refactoring for store Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	13 * This program is distributed in the hope that it will be useful, but
4eb0c7ce86c9 refactoring for store Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	14 * WITHOUT ANY WARRANTY; without even the implied warranty of
4eb0c7ce86c9 refactoring for store Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	15 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
4eb0c7ce86c9 refactoring for store Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	16 * General Public License for more details.
4eb0c7ce86c9 refactoring for store Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	17 *
4eb0c7ce86c9 refactoring for store Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	18 * You should have received a copy of the GNU General Public License
4eb0c7ce86c9 refactoring for store Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	19 * along with this program. If not, see <http://www.gnu.org/licenses/>.
4eb0c7ce86c9 refactoring for store Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	20 **/
4eb0c7ce86c9 refactoring for store Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	21
4eb0c7ce86c9 refactoring for store Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	22
831 84513f2ee1f3 pch for unit tests and server Sebastien Jodogne <s.jodogne@gmail.com> parents: 824 diff changeset	23 #include "PrecompiledHeadersServer.h"
224 4eb0c7ce86c9 refactoring for store Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	24 #include "ServerContext.h"
4eb0c7ce86c9 refactoring for store Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	25
4045 05b8fd21089c fix path Sebastien Jodogne <s.jodogne@gmail.com> parents: 4044 diff changeset	26 #include "../../OrthancFramework/Sources/Cache/SharedArchive.h"
4375 208029732d51 New config option "DeidentifyDimseQueryLogs" Mark Poscablo <Mark.Poscablo@varian.com> parents: 4274 diff changeset	27 #include "../../OrthancFramework/Sources/DicomFormat/DicomElement.h"
4499 6f99949b2878 reorganization Sebastien Jodogne <s.jodogne@gmail.com> parents: 4473 diff changeset	28 #include "../../OrthancFramework/Sources/DicomFormat/DicomStreamReader.h"
4045 05b8fd21089c fix path Sebastien Jodogne <s.jodogne@gmail.com> parents: 4044 diff changeset	29 #include "../../OrthancFramework/Sources/DicomParsing/DcmtkTranscoder.h"
4375 208029732d51 New config option "DeidentifyDimseQueryLogs" Mark Poscablo <Mark.Poscablo@varian.com> parents: 4274 diff changeset	30 #include "../../OrthancFramework/Sources/DicomParsing/DicomModification.h"
4045 05b8fd21089c fix path Sebastien Jodogne <s.jodogne@gmail.com> parents: 4044 diff changeset	31 #include "../../OrthancFramework/Sources/DicomParsing/FromDcmtkBridge.h"
4196 37310bb1cd30 Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find" Sebastien Jodogne <s.jodogne@gmail.com> parents: 4143 diff changeset	32 #include "../../OrthancFramework/Sources/DicomParsing/Internals/DicomImageDecoder.h"
4045 05b8fd21089c fix path Sebastien Jodogne <s.jodogne@gmail.com> parents: 4044 diff changeset	33 #include "../../OrthancFramework/Sources/FileStorage/StorageAccessor.h"
05b8fd21089c fix path Sebastien Jodogne <s.jodogne@gmail.com> parents: 4044 diff changeset	34 #include "../../OrthancFramework/Sources/HttpServer/FilesystemHttpSender.h"
05b8fd21089c fix path Sebastien Jodogne <s.jodogne@gmail.com> parents: 4044 diff changeset	35 #include "../../OrthancFramework/Sources/HttpServer/HttpStreamTranscoder.h"
05b8fd21089c fix path Sebastien Jodogne <s.jodogne@gmail.com> parents: 4044 diff changeset	36 #include "../../OrthancFramework/Sources/JobsEngine/SetOfInstancesJob.h"
05b8fd21089c fix path Sebastien Jodogne <s.jodogne@gmail.com> parents: 4044 diff changeset	37 #include "../../OrthancFramework/Sources/Logging.h"
4845 02d77189d8ba added ReceivedInstanceCallback + sample C++ plugin Alain Mazy <am@osimis.io> parents: 4831 diff changeset	38 #include "../../OrthancFramework/Sources/MallocMemoryBuffer.h"
4045 05b8fd21089c fix path Sebastien Jodogne <s.jodogne@gmail.com> parents: 4044 diff changeset	39 #include "../../OrthancFramework/Sources/MetricsRegistry.h"
2668 d26dd081df97 saving jobs engine on exit Sebastien Jodogne <s.jodogne@gmail.com> parents: 2665 diff changeset	40 #include "../Plugins/Engine/OrthancPlugins.h"
3095 beeeb6096f27 removing dependencies upon ServerContext Sebastien Jodogne <s.jodogne@gmail.com> parents: 3094 diff changeset	41
2940 4767d36679ed refactoring access to Orthanc configuration Sebastien Jodogne <s.jodogne@gmail.com> parents: 2925 diff changeset	42 #include "OrthancConfiguration.h"
2668 d26dd081df97 saving jobs engine on exit Sebastien Jodogne <s.jodogne@gmail.com> parents: 2665 diff changeset	43 #include "OrthancRestApi/OrthancRestApi.h"
3094 61da3c9b4121 cont reorganization Sebastien Jodogne <s.jodogne@gmail.com> parents: 3061 diff changeset	44 #include "Search/DatabaseLookup.h"
2668 d26dd081df97 saving jobs engine on exit Sebastien Jodogne <s.jodogne@gmail.com> parents: 2665 diff changeset	45 #include "ServerJobs/OrthancJobUnserializer.h"
397 941ea46e9e26 lua filter of new instances Sebastien Jodogne <s.jodogne@gmail.com> parents: 394 diff changeset	46 #include "ServerToolbox.h"
3736 0540b54324f1 StorageCommitmentReports Sebastien Jodogne <s.jodogne@gmail.com> parents: 3713 diff changeset	47 #include "StorageCommitmentReports.h"
226 8a26a8e85edf refactoring to read files Sebastien Jodogne <s.jodogne@gmail.com> parents: 224 diff changeset	48
794 437c4a83d2cc refactoring Sebastien Jodogne <s.jodogne@gmail.com> parents: 792 diff changeset	49 #include <dcmtk/dcmdata/dcfilefo.h>
4796 94616af363ec added ReceivedCStoreInstanceFilter lua callback + OrthancPluginRegisterIncomingCStoreInstanceFilter in sdk Alain Mazy <am@osimis.io> parents: 4789 diff changeset	50 #include <dcmtk/dcmnet/dimse.h>
5160 9f16979b6124 fix osx build Alain Mazy <am@osimis.io> parents: 5159 diff changeset	51
9f16979b6124 fix osx build Alain Mazy <am@osimis.io> parents: 5159 diff changeset	52 #if HAVE_MALLOC_TRIM == 1
9f16979b6124 fix osx build Alain Mazy <am@osimis.io> parents: 5159 diff changeset	53 # include <malloc.h>
9f16979b6124 fix osx build Alain Mazy <am@osimis.io> parents: 5159 diff changeset	54 #endif
1001 f3929718ea7e autorouting primitives Sebastien Jodogne <s.jodogne@gmail.com> parents: 998 diff changeset	55
4457 789676a8c96a Refactoring and improvements to the cache of DICOM files in ServerContext Sebastien Jodogne <s.jodogne@gmail.com> parents: 4437 diff changeset	56 static size_t DICOM_CACHE_SIZE = 128 * 1024 * 1024; // 128 MB
1001 f3929718ea7e autorouting primitives Sebastien Jodogne <s.jodogne@gmail.com> parents: 998 diff changeset	57
285 4031f73fe0e4 access to the raw dicom tags Sebastien Jodogne <s.jodogne@gmail.com> parents: 269 diff changeset	58
227 209ca3f6db62 dicom-scu from rest Sebastien Jodogne <s.jodogne@gmail.com> parents: 226 diff changeset	59 /**
209ca3f6db62 dicom-scu from rest Sebastien Jodogne <s.jodogne@gmail.com> parents: 226 diff changeset	60 * IMPORTANT: We make the assumption that the same instance of
209ca3f6db62 dicom-scu from rest Sebastien Jodogne <s.jodogne@gmail.com> parents: 226 diff changeset	61 * FileStorage can be accessed from multiple threads. This seems OK
209ca3f6db62 dicom-scu from rest Sebastien Jodogne <s.jodogne@gmail.com> parents: 226 diff changeset	62 * since the filesystem implements the required locking mechanisms,
209ca3f6db62 dicom-scu from rest Sebastien Jodogne <s.jodogne@gmail.com> parents: 226 diff changeset	63 * but maybe a read-writer lock on the "FileStorage" could be
209ca3f6db62 dicom-scu from rest Sebastien Jodogne <s.jodogne@gmail.com> parents: 226 diff changeset	64 * useful. Conversely, "ServerIndex" already implements mutex-based
209ca3f6db62 dicom-scu from rest Sebastien Jodogne <s.jodogne@gmail.com> parents: 226 diff changeset	65 * locking.
209ca3f6db62 dicom-scu from rest Sebastien Jodogne <s.jodogne@gmail.com> parents: 226 diff changeset	66 **/
209ca3f6db62 dicom-scu from rest Sebastien Jodogne <s.jodogne@gmail.com> parents: 226 diff changeset	67
224 4eb0c7ce86c9 refactoring for store Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	68 namespace Orthanc
4eb0c7ce86c9 refactoring for store Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	69 {
4978 2cfa50d8eb60 Speed-up handling of DicomModalitiesInStudy in C-Find and tools/find queries Alain Mazy <am@osimis.io> parents: 4977 diff changeset	70 static void ComputeStudyTags(ExpandedResource& resource,
2cfa50d8eb60 Speed-up handling of DicomModalitiesInStudy in C-Find and tools/find queries Alain Mazy <am@osimis.io> parents: 4977 diff changeset	71 ServerContext& context,
2cfa50d8eb60 Speed-up handling of DicomModalitiesInStudy in C-Find and tools/find queries Alain Mazy <am@osimis.io> parents: 4977 diff changeset	72 const std::string& studyPublicId,
2cfa50d8eb60 Speed-up handling of DicomModalitiesInStudy in C-Find and tools/find queries Alain Mazy <am@osimis.io> parents: 4977 diff changeset	73 const std::set<DicomTag>& requestedTags);
2cfa50d8eb60 Speed-up handling of DicomModalitiesInStudy in C-Find and tools/find queries Alain Mazy <am@osimis.io> parents: 4977 diff changeset	74
2cfa50d8eb60 Speed-up handling of DicomModalitiesInStudy in C-Find and tools/find queries Alain Mazy <am@osimis.io> parents: 4977 diff changeset	75
4384 7e0d015ad109 new configuration options IngestTranscodingOfUncompressed and IngestTranscodingOfCompressed Sebastien Jodogne <s.jodogne@gmail.com> parents: 4376 diff changeset	76 static bool IsUncompressedTransferSyntax(DicomTransferSyntax transferSyntax)
7e0d015ad109 new configuration options IngestTranscodingOfUncompressed and IngestTranscodingOfCompressed Sebastien Jodogne <s.jodogne@gmail.com> parents: 4376 diff changeset	77 {
7e0d015ad109 new configuration options IngestTranscodingOfUncompressed and IngestTranscodingOfCompressed Sebastien Jodogne <s.jodogne@gmail.com> parents: 4376 diff changeset	78 return (transferSyntax == DicomTransferSyntax_LittleEndianImplicit \|\|
7e0d015ad109 new configuration options IngestTranscodingOfUncompressed and IngestTranscodingOfCompressed Sebastien Jodogne <s.jodogne@gmail.com> parents: 4376 diff changeset	79 transferSyntax == DicomTransferSyntax_LittleEndianExplicit \|\|
7e0d015ad109 new configuration options IngestTranscodingOfUncompressed and IngestTranscodingOfCompressed Sebastien Jodogne <s.jodogne@gmail.com> parents: 4376 diff changeset	80 transferSyntax == DicomTransferSyntax_BigEndianExplicit);
7e0d015ad109 new configuration options IngestTranscodingOfUncompressed and IngestTranscodingOfCompressed Sebastien Jodogne <s.jodogne@gmail.com> parents: 4376 diff changeset	81 }
7e0d015ad109 new configuration options IngestTranscodingOfUncompressed and IngestTranscodingOfCompressed Sebastien Jodogne <s.jodogne@gmail.com> parents: 4376 diff changeset	82
7e0d015ad109 new configuration options IngestTranscodingOfUncompressed and IngestTranscodingOfCompressed Sebastien Jodogne <s.jodogne@gmail.com> parents: 4376 diff changeset	83
7e0d015ad109 new configuration options IngestTranscodingOfUncompressed and IngestTranscodingOfCompressed Sebastien Jodogne <s.jodogne@gmail.com> parents: 4376 diff changeset	84 static bool IsTranscodableTransferSyntax(DicomTransferSyntax transferSyntax)
7e0d015ad109 new configuration options IngestTranscodingOfUncompressed and IngestTranscodingOfCompressed Sebastien Jodogne <s.jodogne@gmail.com> parents: 4376 diff changeset	85 {
7e0d015ad109 new configuration options IngestTranscodingOfUncompressed and IngestTranscodingOfCompressed Sebastien Jodogne <s.jodogne@gmail.com> parents: 4376 diff changeset	86 return (
7e0d015ad109 new configuration options IngestTranscodingOfUncompressed and IngestTranscodingOfCompressed Sebastien Jodogne <s.jodogne@gmail.com> parents: 4376 diff changeset	87 // Do not try to transcode DICOM videos (new in Orthanc 1.8.2)
7e0d015ad109 new configuration options IngestTranscodingOfUncompressed and IngestTranscodingOfCompressed Sebastien Jodogne <s.jodogne@gmail.com> parents: 4376 diff changeset	88 transferSyntax != DicomTransferSyntax_MPEG2MainProfileAtMainLevel &&
7e0d015ad109 new configuration options IngestTranscodingOfUncompressed and IngestTranscodingOfCompressed Sebastien Jodogne <s.jodogne@gmail.com> parents: 4376 diff changeset	89 transferSyntax != DicomTransferSyntax_MPEG2MainProfileAtHighLevel &&
7e0d015ad109 new configuration options IngestTranscodingOfUncompressed and IngestTranscodingOfCompressed Sebastien Jodogne <s.jodogne@gmail.com> parents: 4376 diff changeset	90 transferSyntax != DicomTransferSyntax_MPEG4HighProfileLevel4_1 &&
7e0d015ad109 new configuration options IngestTranscodingOfUncompressed and IngestTranscodingOfCompressed Sebastien Jodogne <s.jodogne@gmail.com> parents: 4376 diff changeset	91 transferSyntax != DicomTransferSyntax_MPEG4BDcompatibleHighProfileLevel4_1 &&
7e0d015ad109 new configuration options IngestTranscodingOfUncompressed and IngestTranscodingOfCompressed Sebastien Jodogne <s.jodogne@gmail.com> parents: 4376 diff changeset	92 transferSyntax != DicomTransferSyntax_MPEG4HighProfileLevel4_2_For2DVideo &&
7e0d015ad109 new configuration options IngestTranscodingOfUncompressed and IngestTranscodingOfCompressed Sebastien Jodogne <s.jodogne@gmail.com> parents: 4376 diff changeset	93 transferSyntax != DicomTransferSyntax_MPEG4HighProfileLevel4_2_For3DVideo &&
7e0d015ad109 new configuration options IngestTranscodingOfUncompressed and IngestTranscodingOfCompressed Sebastien Jodogne <s.jodogne@gmail.com> parents: 4376 diff changeset	94 transferSyntax != DicomTransferSyntax_MPEG4StereoHighProfileLevel4_2 &&
7e0d015ad109 new configuration options IngestTranscodingOfUncompressed and IngestTranscodingOfCompressed Sebastien Jodogne <s.jodogne@gmail.com> parents: 4376 diff changeset	95 transferSyntax != DicomTransferSyntax_HEVCMainProfileLevel5_1 &&
7e0d015ad109 new configuration options IngestTranscodingOfUncompressed and IngestTranscodingOfCompressed Sebastien Jodogne <s.jodogne@gmail.com> parents: 4376 diff changeset	96 transferSyntax != DicomTransferSyntax_HEVCMain10ProfileLevel5_1 &&
7e0d015ad109 new configuration options IngestTranscodingOfUncompressed and IngestTranscodingOfCompressed Sebastien Jodogne <s.jodogne@gmail.com> parents: 4376 diff changeset	97
7e0d015ad109 new configuration options IngestTranscodingOfUncompressed and IngestTranscodingOfCompressed Sebastien Jodogne <s.jodogne@gmail.com> parents: 4376 diff changeset	98 // Do not try to transcode special transfer syntaxes
7e0d015ad109 new configuration options IngestTranscodingOfUncompressed and IngestTranscodingOfCompressed Sebastien Jodogne <s.jodogne@gmail.com> parents: 4376 diff changeset	99 transferSyntax != DicomTransferSyntax_RFC2557MimeEncapsulation &&
7e0d015ad109 new configuration options IngestTranscodingOfUncompressed and IngestTranscodingOfCompressed Sebastien Jodogne <s.jodogne@gmail.com> parents: 4376 diff changeset	100 transferSyntax != DicomTransferSyntax_XML);
7e0d015ad109 new configuration options IngestTranscodingOfUncompressed and IngestTranscodingOfCompressed Sebastien Jodogne <s.jodogne@gmail.com> parents: 4376 diff changeset	101 }
7e0d015ad109 new configuration options IngestTranscodingOfUncompressed and IngestTranscodingOfCompressed Sebastien Jodogne <s.jodogne@gmail.com> parents: 4376 diff changeset	102
4796 94616af363ec added ReceivedCStoreInstanceFilter lua callback + OrthancPluginRegisterIncomingCStoreInstanceFilter in sdk Alain Mazy <am@osimis.io> parents: 4789 diff changeset	103
94616af363ec added ReceivedCStoreInstanceFilter lua callback + OrthancPluginRegisterIncomingCStoreInstanceFilter in sdk Alain Mazy <am@osimis.io> parents: 4789 diff changeset	104 ServerContext::StoreResult::StoreResult() :
94616af363ec added ReceivedCStoreInstanceFilter lua callback + OrthancPluginRegisterIncomingCStoreInstanceFilter in sdk Alain Mazy <am@osimis.io> parents: 4789 diff changeset	105 status_(StoreStatus_Failure),
94616af363ec added ReceivedCStoreInstanceFilter lua callback + OrthancPluginRegisterIncomingCStoreInstanceFilter in sdk Alain Mazy <am@osimis.io> parents: 4789 diff changeset	106 cstoreStatusCode_(0)
94616af363ec added ReceivedCStoreInstanceFilter lua callback + OrthancPluginRegisterIncomingCStoreInstanceFilter in sdk Alain Mazy <am@osimis.io> parents: 4789 diff changeset	107 {
94616af363ec added ReceivedCStoreInstanceFilter lua callback + OrthancPluginRegisterIncomingCStoreInstanceFilter in sdk Alain Mazy <am@osimis.io> parents: 4789 diff changeset	108 }
94616af363ec added ReceivedCStoreInstanceFilter lua callback + OrthancPluginRegisterIncomingCStoreInstanceFilter in sdk Alain Mazy <am@osimis.io> parents: 4789 diff changeset	109
5182 cddf28cfcd8d style Sebastien Jodogne <s.jodogne@gmail.com> parents: 5181 diff changeset	110
cddf28cfcd8d style Sebastien Jodogne <s.jodogne@gmail.com> parents: 5181 diff changeset	111 #if HAVE_MALLOC_TRIM == 1
5183 5ec3dcdf78b9 renamed HousekeeperThread as MemoryTrimmingThread to avoid confusion with Housekeeper plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: 5182 diff changeset	112 void ServerContext::MemoryTrimmingThread(ServerContext* that,
5346 566e8d32bd3a Reduce the frequency of memory trimming from 100ms to 30s to avoid high idle CPU load Alain Mazy <am@osimis.io> parents: 5337 diff changeset	113 unsigned int intervalInSeconds)
5152 c81f363d3aa3 housekeeper thread to call malloc_trim and give back memory to the system Alain Mazy <am@osimis.io> parents: 5149 diff changeset	114 {
5346 566e8d32bd3a Reduce the frequency of memory trimming from 100ms to 30s to avoid high idle CPU load Alain Mazy <am@osimis.io> parents: 5337 diff changeset	115 boost::posix_time::ptime lastExecution = boost::posix_time::second_clock::universal_time();
566e8d32bd3a Reduce the frequency of memory trimming from 100ms to 30s to avoid high idle CPU load Alain Mazy <am@osimis.io> parents: 5337 diff changeset	116
5183 5ec3dcdf78b9 renamed HousekeeperThread as MemoryTrimmingThread to avoid confusion with Housekeeper plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: 5182 diff changeset	117 // This thread is started only if malloc_trim is defined
5152 c81f363d3aa3 housekeeper thread to call malloc_trim and give back memory to the system Alain Mazy <am@osimis.io> parents: 5149 diff changeset	118 while (!that->done_)
c81f363d3aa3 housekeeper thread to call malloc_trim and give back memory to the system Alain Mazy <am@osimis.io> parents: 5149 diff changeset	119 {
5346 566e8d32bd3a Reduce the frequency of memory trimming from 100ms to 30s to avoid high idle CPU load Alain Mazy <am@osimis.io> parents: 5337 diff changeset	120 boost::posix_time::ptime now = boost::posix_time::second_clock::universal_time();
566e8d32bd3a Reduce the frequency of memory trimming from 100ms to 30s to avoid high idle CPU load Alain Mazy <am@osimis.io> parents: 5337 diff changeset	121 boost::posix_time::time_duration elapsed = now - lastExecution;
566e8d32bd3a Reduce the frequency of memory trimming from 100ms to 30s to avoid high idle CPU load Alain Mazy <am@osimis.io> parents: 5337 diff changeset	122
566e8d32bd3a Reduce the frequency of memory trimming from 100ms to 30s to avoid high idle CPU load Alain Mazy <am@osimis.io> parents: 5337 diff changeset	123 if (elapsed.total_seconds() > intervalInSeconds)
566e8d32bd3a Reduce the frequency of memory trimming from 100ms to 30s to avoid high idle CPU load Alain Mazy <am@osimis.io> parents: 5337 diff changeset	124 {
566e8d32bd3a Reduce the frequency of memory trimming from 100ms to 30s to avoid high idle CPU load Alain Mazy <am@osimis.io> parents: 5337 diff changeset	125 // If possible, gives memory back to the system
566e8d32bd3a Reduce the frequency of memory trimming from 100ms to 30s to avoid high idle CPU load Alain Mazy <am@osimis.io> parents: 5337 diff changeset	126 // (see OrthancServer/Resources/ImplementationNotes/memory_consumption.txt)
566e8d32bd3a Reduce the frequency of memory trimming from 100ms to 30s to avoid high idle CPU load Alain Mazy <am@osimis.io> parents: 5337 diff changeset	127 {
566e8d32bd3a Reduce the frequency of memory trimming from 100ms to 30s to avoid high idle CPU load Alain Mazy <am@osimis.io> parents: 5337 diff changeset	128 MetricsRegistry::Timer timer(that->GetMetricsRegistry(), "orthanc_memory_trimming_duration_ms");
566e8d32bd3a Reduce the frequency of memory trimming from 100ms to 30s to avoid high idle CPU load Alain Mazy <am@osimis.io> parents: 5337 diff changeset	129 malloc_trim(128*1024);
566e8d32bd3a Reduce the frequency of memory trimming from 100ms to 30s to avoid high idle CPU load Alain Mazy <am@osimis.io> parents: 5337 diff changeset	130 }
566e8d32bd3a Reduce the frequency of memory trimming from 100ms to 30s to avoid high idle CPU load Alain Mazy <am@osimis.io> parents: 5337 diff changeset	131 lastExecution = boost::posix_time::second_clock::universal_time();
566e8d32bd3a Reduce the frequency of memory trimming from 100ms to 30s to avoid high idle CPU load Alain Mazy <am@osimis.io> parents: 5337 diff changeset	132 }
566e8d32bd3a Reduce the frequency of memory trimming from 100ms to 30s to avoid high idle CPU load Alain Mazy <am@osimis.io> parents: 5337 diff changeset	133
566e8d32bd3a Reduce the frequency of memory trimming from 100ms to 30s to avoid high idle CPU load Alain Mazy <am@osimis.io> parents: 5337 diff changeset	134 boost::this_thread::sleep(boost::posix_time::milliseconds(100));
5152 c81f363d3aa3 housekeeper thread to call malloc_trim and give back memory to the system Alain Mazy <am@osimis.io> parents: 5149 diff changeset	135 }
c81f363d3aa3 housekeeper thread to call malloc_trim and give back memory to the system Alain Mazy <am@osimis.io> parents: 5149 diff changeset	136 }
5182 cddf28cfcd8d style Sebastien Jodogne <s.jodogne@gmail.com> parents: 5181 diff changeset	137 #endif
cddf28cfcd8d style Sebastien Jodogne <s.jodogne@gmail.com> parents: 5181 diff changeset	138
4384 7e0d015ad109 new configuration options IngestTranscodingOfUncompressed and IngestTranscodingOfCompressed Sebastien Jodogne <s.jodogne@gmail.com> parents: 4376 diff changeset	139
2668 d26dd081df97 saving jobs engine on exit Sebastien Jodogne <s.jodogne@gmail.com> parents: 2665 diff changeset	140 void ServerContext::ChangeThread(ServerContext* that,
d26dd081df97 saving jobs engine on exit Sebastien Jodogne <s.jodogne@gmail.com> parents: 2665 diff changeset	141 unsigned int sleepDelay)
1436 0a3e3be59094 uncoupling of SignalChange for Lua scripts Sebastien Jodogne <s.jodogne@gmail.com> parents: 1434 diff changeset	142 {
0a3e3be59094 uncoupling of SignalChange for Lua scripts Sebastien Jodogne <s.jodogne@gmail.com> parents: 1434 diff changeset	143 while (!that->done_)
0a3e3be59094 uncoupling of SignalChange for Lua scripts Sebastien Jodogne <s.jodogne@gmail.com> parents: 1434 diff changeset	144 {
3712 2a170a8f1faf replacing std::auto_ptr by std::unique_ptr Sebastien Jodogne <s.jodogne@gmail.com> parents: 3679 diff changeset	145 std::unique_ptr<IDynamicObject> obj(that->pendingChanges_.Dequeue(sleepDelay));
1436 0a3e3be59094 uncoupling of SignalChange for Lua scripts Sebastien Jodogne <s.jodogne@gmail.com> parents: 1434 diff changeset	146
0a3e3be59094 uncoupling of SignalChange for Lua scripts Sebastien Jodogne <s.jodogne@gmail.com> parents: 1434 diff changeset	147 if (obj.get() != NULL)
0a3e3be59094 uncoupling of SignalChange for Lua scripts Sebastien Jodogne <s.jodogne@gmail.com> parents: 1434 diff changeset	148 {
0a3e3be59094 uncoupling of SignalChange for Lua scripts Sebastien Jodogne <s.jodogne@gmail.com> parents: 1434 diff changeset	149 const ServerIndexChange& change = dynamic_cast<const ServerIndexChange&>(*obj.get());
0a3e3be59094 uncoupling of SignalChange for Lua scripts Sebastien Jodogne <s.jodogne@gmail.com> parents: 1434 diff changeset	150
3947 cf6eb4fc6841 fix issue 179: use a shared mutex to avoid deadlock in python plugins Alain Mazy <alain@mazy.be> parents: 3945 diff changeset	151 boost::shared_lock<boost::shared_mutex> lock(that->listenersMutex_);
1436 0a3e3be59094 uncoupling of SignalChange for Lua scripts Sebastien Jodogne <s.jodogne@gmail.com> parents: 1434 diff changeset	152 for (ServerListeners::iterator it = that->listeners_.begin();
0a3e3be59094 uncoupling of SignalChange for Lua scripts Sebastien Jodogne <s.jodogne@gmail.com> parents: 1434 diff changeset	153 it != that->listeners_.end(); ++it)
0a3e3be59094 uncoupling of SignalChange for Lua scripts Sebastien Jodogne <s.jodogne@gmail.com> parents: 1434 diff changeset	154 {
0a3e3be59094 uncoupling of SignalChange for Lua scripts Sebastien Jodogne <s.jodogne@gmail.com> parents: 1434 diff changeset	155 try
0a3e3be59094 uncoupling of SignalChange for Lua scripts Sebastien Jodogne <s.jodogne@gmail.com> parents: 1434 diff changeset	156 {
2134 ddc75c6c712d Avoid hard crash if not enough memory Sebastien Jodogne <s.jodogne@gmail.com> parents: 2128 diff changeset	157 try
ddc75c6c712d Avoid hard crash if not enough memory Sebastien Jodogne <s.jodogne@gmail.com> parents: 2128 diff changeset	158 {
ddc75c6c712d Avoid hard crash if not enough memory Sebastien Jodogne <s.jodogne@gmail.com> parents: 2128 diff changeset	159 it->GetListener().SignalChange(change);
ddc75c6c712d Avoid hard crash if not enough memory Sebastien Jodogne <s.jodogne@gmail.com> parents: 2128 diff changeset	160 }
ddc75c6c712d Avoid hard crash if not enough memory Sebastien Jodogne <s.jodogne@gmail.com> parents: 2128 diff changeset	161 catch (std::bad_alloc&)
ddc75c6c712d Avoid hard crash if not enough memory Sebastien Jodogne <s.jodogne@gmail.com> parents: 2128 diff changeset	162 {
ddc75c6c712d Avoid hard crash if not enough memory Sebastien Jodogne <s.jodogne@gmail.com> parents: 2128 diff changeset	163 LOG(ERROR) << "Not enough memory while signaling a change";
ddc75c6c712d Avoid hard crash if not enough memory Sebastien Jodogne <s.jodogne@gmail.com> parents: 2128 diff changeset	164 }
ddc75c6c712d Avoid hard crash if not enough memory Sebastien Jodogne <s.jodogne@gmail.com> parents: 2128 diff changeset	165 catch (...)
ddc75c6c712d Avoid hard crash if not enough memory Sebastien Jodogne <s.jodogne@gmail.com> parents: 2128 diff changeset	166 {
ddc75c6c712d Avoid hard crash if not enough memory Sebastien Jodogne <s.jodogne@gmail.com> parents: 2128 diff changeset	167 throw OrthancException(ErrorCode_InternalError);
ddc75c6c712d Avoid hard crash if not enough memory Sebastien Jodogne <s.jodogne@gmail.com> parents: 2128 diff changeset	168 }
1436 0a3e3be59094 uncoupling of SignalChange for Lua scripts Sebastien Jodogne <s.jodogne@gmail.com> parents: 1434 diff changeset	169 }
0a3e3be59094 uncoupling of SignalChange for Lua scripts Sebastien Jodogne <s.jodogne@gmail.com> parents: 1434 diff changeset	170 catch (OrthancException& e)
0a3e3be59094 uncoupling of SignalChange for Lua scripts Sebastien Jodogne <s.jodogne@gmail.com> parents: 1434 diff changeset	171 {
0a3e3be59094 uncoupling of SignalChange for Lua scripts Sebastien Jodogne <s.jodogne@gmail.com> parents: 1434 diff changeset	172 LOG(ERROR) << "Error in the " << it->GetDescription()
2135 cadfe0a2a393 fix in the sample basic plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: 2134 diff changeset	173 << " callback while signaling a change: " << e.What()
cadfe0a2a393 fix in the sample basic plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: 2134 diff changeset	174 << " (code " << e.GetErrorCode() << ")";
1436 0a3e3be59094 uncoupling of SignalChange for Lua scripts Sebastien Jodogne <s.jodogne@gmail.com> parents: 1434 diff changeset	175 }
0a3e3be59094 uncoupling of SignalChange for Lua scripts Sebastien Jodogne <s.jodogne@gmail.com> parents: 1434 diff changeset	176 }
0a3e3be59094 uncoupling of SignalChange for Lua scripts Sebastien Jodogne <s.jodogne@gmail.com> parents: 1434 diff changeset	177 }
0a3e3be59094 uncoupling of SignalChange for Lua scripts Sebastien Jodogne <s.jodogne@gmail.com> parents: 1434 diff changeset	178 }
0a3e3be59094 uncoupling of SignalChange for Lua scripts Sebastien Jodogne <s.jodogne@gmail.com> parents: 1434 diff changeset	179 }
0a3e3be59094 uncoupling of SignalChange for Lua scripts Sebastien Jodogne <s.jodogne@gmail.com> parents: 1434 diff changeset	180
0a3e3be59094 uncoupling of SignalChange for Lua scripts Sebastien Jodogne <s.jodogne@gmail.com> parents: 1434 diff changeset	181
2672 3efc44fac209 periodically saving jobs Sebastien Jodogne <s.jodogne@gmail.com> parents: 2671 diff changeset	182 void ServerContext::SaveJobsThread(ServerContext* that,
3efc44fac209 periodically saving jobs Sebastien Jodogne <s.jodogne@gmail.com> parents: 2671 diff changeset	183 unsigned int sleepDelay)
3efc44fac209 periodically saving jobs Sebastien Jodogne <s.jodogne@gmail.com> parents: 2671 diff changeset	184 {
3efc44fac209 periodically saving jobs Sebastien Jodogne <s.jodogne@gmail.com> parents: 2671 diff changeset	185 static const boost::posix_time::time_duration PERIODICITY =
3efc44fac209 periodically saving jobs Sebastien Jodogne <s.jodogne@gmail.com> parents: 2671 diff changeset	186 boost::posix_time::seconds(10);
3efc44fac209 periodically saving jobs Sebastien Jodogne <s.jodogne@gmail.com> parents: 2671 diff changeset	187
3efc44fac209 periodically saving jobs Sebastien Jodogne <s.jodogne@gmail.com> parents: 2671 diff changeset	188 boost::posix_time::ptime next =
3efc44fac209 periodically saving jobs Sebastien Jodogne <s.jodogne@gmail.com> parents: 2671 diff changeset	189 boost::posix_time::microsec_clock::universal_time() + PERIODICITY;
3efc44fac209 periodically saving jobs Sebastien Jodogne <s.jodogne@gmail.com> parents: 2671 diff changeset	190
3efc44fac209 periodically saving jobs Sebastien Jodogne <s.jodogne@gmail.com> parents: 2671 diff changeset	191 while (!that->done_)
3efc44fac209 periodically saving jobs Sebastien Jodogne <s.jodogne@gmail.com> parents: 2671 diff changeset	192 {
3efc44fac209 periodically saving jobs Sebastien Jodogne <s.jodogne@gmail.com> parents: 2671 diff changeset	193 boost::this_thread::sleep(boost::posix_time::milliseconds(sleepDelay));
3efc44fac209 periodically saving jobs Sebastien Jodogne <s.jodogne@gmail.com> parents: 2671 diff changeset	194
2673 8e0bc055d18c JobsRegistry::IObserver Sebastien Jodogne <s.jodogne@gmail.com> parents: 2672 diff changeset	195 if (that->haveJobsChanged_ \|\|
8e0bc055d18c JobsRegistry::IObserver Sebastien Jodogne <s.jodogne@gmail.com> parents: 2672 diff changeset	196 boost::posix_time::microsec_clock::universal_time() >= next)
2672 3efc44fac209 periodically saving jobs Sebastien Jodogne <s.jodogne@gmail.com> parents: 2671 diff changeset	197 {
2673 8e0bc055d18c JobsRegistry::IObserver Sebastien Jodogne <s.jodogne@gmail.com> parents: 2672 diff changeset	198 that->haveJobsChanged_ = false;
8e0bc055d18c JobsRegistry::IObserver Sebastien Jodogne <s.jodogne@gmail.com> parents: 2672 diff changeset	199 that->SaveJobsEngine();
2672 3efc44fac209 periodically saving jobs Sebastien Jodogne <s.jodogne@gmail.com> parents: 2671 diff changeset	200 next = boost::posix_time::microsec_clock::universal_time() + PERIODICITY;
3efc44fac209 periodically saving jobs Sebastien Jodogne <s.jodogne@gmail.com> parents: 2671 diff changeset	201 }
3efc44fac209 periodically saving jobs Sebastien Jodogne <s.jodogne@gmail.com> parents: 2671 diff changeset	202 }
3efc44fac209 periodically saving jobs Sebastien Jodogne <s.jodogne@gmail.com> parents: 2671 diff changeset	203 }
2673 8e0bc055d18c JobsRegistry::IObserver Sebastien Jodogne <s.jodogne@gmail.com> parents: 2672 diff changeset	204
8e0bc055d18c JobsRegistry::IObserver Sebastien Jodogne <s.jodogne@gmail.com> parents: 2672 diff changeset	205
8e0bc055d18c JobsRegistry::IObserver Sebastien Jodogne <s.jodogne@gmail.com> parents: 2672 diff changeset	206 void ServerContext::SignalJobSubmitted(const std::string& jobId)
8e0bc055d18c JobsRegistry::IObserver Sebastien Jodogne <s.jodogne@gmail.com> parents: 2672 diff changeset	207 {
8e0bc055d18c JobsRegistry::IObserver Sebastien Jodogne <s.jodogne@gmail.com> parents: 2672 diff changeset	208 haveJobsChanged_ = true;
2738 3a55b77339ff fix deadlock in Lua scripts Sebastien Jodogne <s.jodogne@gmail.com> parents: 2716 diff changeset	209 mainLua_.SignalJobSubmitted(jobId);
4129 7aa92c87fdc2 fix Sebastien Jodogne <s.jodogne@gmail.com> parents: 4055 diff changeset	210
7aa92c87fdc2 fix Sebastien Jodogne <s.jodogne@gmail.com> parents: 4055 diff changeset	211 #if ORTHANC_ENABLE_PLUGINS == 1
7aa92c87fdc2 fix Sebastien Jodogne <s.jodogne@gmail.com> parents: 4055 diff changeset	212 if (HasPlugins())
7aa92c87fdc2 fix Sebastien Jodogne <s.jodogne@gmail.com> parents: 4055 diff changeset	213 {
7aa92c87fdc2 fix Sebastien Jodogne <s.jodogne@gmail.com> parents: 4055 diff changeset	214 GetPlugins().SignalJobSubmitted(jobId);
7aa92c87fdc2 fix Sebastien Jodogne <s.jodogne@gmail.com> parents: 4055 diff changeset	215 }
7aa92c87fdc2 fix Sebastien Jodogne <s.jodogne@gmail.com> parents: 4055 diff changeset	216 #endif
2673 8e0bc055d18c JobsRegistry::IObserver Sebastien Jodogne <s.jodogne@gmail.com> parents: 2672 diff changeset	217 }
8e0bc055d18c JobsRegistry::IObserver Sebastien Jodogne <s.jodogne@gmail.com> parents: 2672 diff changeset	218
8e0bc055d18c JobsRegistry::IObserver Sebastien Jodogne <s.jodogne@gmail.com> parents: 2672 diff changeset	219
8e0bc055d18c JobsRegistry::IObserver Sebastien Jodogne <s.jodogne@gmail.com> parents: 2672 diff changeset	220 void ServerContext::SignalJobSuccess(const std::string& jobId)
8e0bc055d18c JobsRegistry::IObserver Sebastien Jodogne <s.jodogne@gmail.com> parents: 2672 diff changeset	221 {
8e0bc055d18c JobsRegistry::IObserver Sebastien Jodogne <s.jodogne@gmail.com> parents: 2672 diff changeset	222 haveJobsChanged_ = true;
2738 3a55b77339ff fix deadlock in Lua scripts Sebastien Jodogne <s.jodogne@gmail.com> parents: 2716 diff changeset	223 mainLua_.SignalJobSuccess(jobId);
4129 7aa92c87fdc2 fix Sebastien Jodogne <s.jodogne@gmail.com> parents: 4055 diff changeset	224
7aa92c87fdc2 fix Sebastien Jodogne <s.jodogne@gmail.com> parents: 4055 diff changeset	225 #if ORTHANC_ENABLE_PLUGINS == 1
7aa92c87fdc2 fix Sebastien Jodogne <s.jodogne@gmail.com> parents: 4055 diff changeset	226 if (HasPlugins())
7aa92c87fdc2 fix Sebastien Jodogne <s.jodogne@gmail.com> parents: 4055 diff changeset	227 {
7aa92c87fdc2 fix Sebastien Jodogne <s.jodogne@gmail.com> parents: 4055 diff changeset	228 GetPlugins().SignalJobSuccess(jobId);
7aa92c87fdc2 fix Sebastien Jodogne <s.jodogne@gmail.com> parents: 4055 diff changeset	229 }
7aa92c87fdc2 fix Sebastien Jodogne <s.jodogne@gmail.com> parents: 4055 diff changeset	230 #endif
2673 8e0bc055d18c JobsRegistry::IObserver Sebastien Jodogne <s.jodogne@gmail.com> parents: 2672 diff changeset	231 }
2672 3efc44fac209 periodically saving jobs Sebastien Jodogne <s.jodogne@gmail.com> parents: 2671 diff changeset	232
3efc44fac209 periodically saving jobs Sebastien Jodogne <s.jodogne@gmail.com> parents: 2671 diff changeset	233
2673 8e0bc055d18c JobsRegistry::IObserver Sebastien Jodogne <s.jodogne@gmail.com> parents: 2672 diff changeset	234 void ServerContext::SignalJobFailure(const std::string& jobId)
8e0bc055d18c JobsRegistry::IObserver Sebastien Jodogne <s.jodogne@gmail.com> parents: 2672 diff changeset	235 {
8e0bc055d18c JobsRegistry::IObserver Sebastien Jodogne <s.jodogne@gmail.com> parents: 2672 diff changeset	236 haveJobsChanged_ = true;
2738 3a55b77339ff fix deadlock in Lua scripts Sebastien Jodogne <s.jodogne@gmail.com> parents: 2716 diff changeset	237 mainLua_.SignalJobFailure(jobId);
4129 7aa92c87fdc2 fix Sebastien Jodogne <s.jodogne@gmail.com> parents: 4055 diff changeset	238
7aa92c87fdc2 fix Sebastien Jodogne <s.jodogne@gmail.com> parents: 4055 diff changeset	239 #if ORTHANC_ENABLE_PLUGINS == 1
7aa92c87fdc2 fix Sebastien Jodogne <s.jodogne@gmail.com> parents: 4055 diff changeset	240 if (HasPlugins())
7aa92c87fdc2 fix Sebastien Jodogne <s.jodogne@gmail.com> parents: 4055 diff changeset	241 {
7aa92c87fdc2 fix Sebastien Jodogne <s.jodogne@gmail.com> parents: 4055 diff changeset	242 GetPlugins().SignalJobFailure(jobId);
7aa92c87fdc2 fix Sebastien Jodogne <s.jodogne@gmail.com> parents: 4055 diff changeset	243 }
7aa92c87fdc2 fix Sebastien Jodogne <s.jodogne@gmail.com> parents: 4055 diff changeset	244 #endif
2673 8e0bc055d18c JobsRegistry::IObserver Sebastien Jodogne <s.jodogne@gmail.com> parents: 2672 diff changeset	245 }
8e0bc055d18c JobsRegistry::IObserver Sebastien Jodogne <s.jodogne@gmail.com> parents: 2672 diff changeset	246
8e0bc055d18c JobsRegistry::IObserver Sebastien Jodogne <s.jodogne@gmail.com> parents: 2672 diff changeset	247
2671 06c0a6b8a871 new command-line argument: --no-jobs Sebastien Jodogne <s.jodogne@gmail.com> parents: 2668 diff changeset	248 void ServerContext::SetupJobsEngine(bool unitTesting,
06c0a6b8a871 new command-line argument: --no-jobs Sebastien Jodogne <s.jodogne@gmail.com> parents: 2668 diff changeset	249 bool loadJobsFromDatabase)
2668 d26dd081df97 saving jobs engine on exit Sebastien Jodogne <s.jodogne@gmail.com> parents: 2665 diff changeset	250 {
2671 06c0a6b8a871 new command-line argument: --no-jobs Sebastien Jodogne <s.jodogne@gmail.com> parents: 2668 diff changeset	251 if (loadJobsFromDatabase)
2668 d26dd081df97 saving jobs engine on exit Sebastien Jodogne <s.jodogne@gmail.com> parents: 2665 diff changeset	252 {
2671 06c0a6b8a871 new command-line argument: --no-jobs Sebastien Jodogne <s.jodogne@gmail.com> parents: 2668 diff changeset	253 std::string serialized;
4607 f75c63aa9de0 differentiating between shared and private global properties Sebastien Jodogne <s.jodogne@gmail.com> parents: 4519 diff changeset	254 if (index_.LookupGlobalProperty(serialized, GlobalProperty_JobsRegistry, false /* not shared */))
2671 06c0a6b8a871 new command-line argument: --no-jobs Sebastien Jodogne <s.jodogne@gmail.com> parents: 2668 diff changeset	255 {
06c0a6b8a871 new command-line argument: --no-jobs Sebastien Jodogne <s.jodogne@gmail.com> parents: 2668 diff changeset	256 LOG(WARNING) << "Reloading the jobs from the last execution of Orthanc";
2668 d26dd081df97 saving jobs engine on exit Sebastien Jodogne <s.jodogne@gmail.com> parents: 2665 diff changeset	257
2671 06c0a6b8a871 new command-line argument: --no-jobs Sebastien Jodogne <s.jodogne@gmail.com> parents: 2668 diff changeset	258 try
06c0a6b8a871 new command-line argument: --no-jobs Sebastien Jodogne <s.jodogne@gmail.com> parents: 2668 diff changeset	259 {
4205 d962a2996637 cppcheck Sebastien Jodogne <s.jodogne@gmail.com> parents: 4203 diff changeset	260 OrthancJobUnserializer unserializer(*this);
2815 925d8dc03a23 unserialization of jobs from plugins Sebastien Jodogne <s.jodogne@gmail.com> parents: 2808 diff changeset	261 jobsEngine_.LoadRegistryFromString(unserializer, serialized);
2671 06c0a6b8a871 new command-line argument: --no-jobs Sebastien Jodogne <s.jodogne@gmail.com> parents: 2668 diff changeset	262 }
06c0a6b8a871 new command-line argument: --no-jobs Sebastien Jodogne <s.jodogne@gmail.com> parents: 2668 diff changeset	263 catch (OrthancException& e)
06c0a6b8a871 new command-line argument: --no-jobs Sebastien Jodogne <s.jodogne@gmail.com> parents: 2668 diff changeset	264 {
2925 a80ba85d89e6 Orthanc starts even if jobs from a previous execution cannot be unserialized Sebastien Jodogne <s.jodogne@gmail.com> parents: 2898 diff changeset	265 LOG(WARNING) << "Cannot unserialize the jobs engine, starting anyway: " << e.What();
2671 06c0a6b8a871 new command-line argument: --no-jobs Sebastien Jodogne <s.jodogne@gmail.com> parents: 2668 diff changeset	266 }
2668 d26dd081df97 saving jobs engine on exit Sebastien Jodogne <s.jodogne@gmail.com> parents: 2665 diff changeset	267 }
2671 06c0a6b8a871 new command-line argument: --no-jobs Sebastien Jodogne <s.jodogne@gmail.com> parents: 2668 diff changeset	268 else
2668 d26dd081df97 saving jobs engine on exit Sebastien Jodogne <s.jodogne@gmail.com> parents: 2665 diff changeset	269 {
2671 06c0a6b8a871 new command-line argument: --no-jobs Sebastien Jodogne <s.jodogne@gmail.com> parents: 2668 diff changeset	270 LOG(INFO) << "The last execution of Orthanc has archived no job";
2668 d26dd081df97 saving jobs engine on exit Sebastien Jodogne <s.jodogne@gmail.com> parents: 2665 diff changeset	271 }
d26dd081df97 saving jobs engine on exit Sebastien Jodogne <s.jodogne@gmail.com> parents: 2665 diff changeset	272 }
d26dd081df97 saving jobs engine on exit Sebastien Jodogne <s.jodogne@gmail.com> parents: 2665 diff changeset	273 else
d26dd081df97 saving jobs engine on exit Sebastien Jodogne <s.jodogne@gmail.com> parents: 2665 diff changeset	274 {
2925 a80ba85d89e6 Orthanc starts even if jobs from a previous execution cannot be unserialized Sebastien Jodogne <s.jodogne@gmail.com> parents: 2898 diff changeset	275 LOG(INFO) << "Not reloading the jobs from the last execution of Orthanc";
2668 d26dd081df97 saving jobs engine on exit Sebastien Jodogne <s.jodogne@gmail.com> parents: 2665 diff changeset	276 }
d26dd081df97 saving jobs engine on exit Sebastien Jodogne <s.jodogne@gmail.com> parents: 2665 diff changeset	277
4024 1d2b31fc782f new 'changes': JobSubmitted, JobSuccess, JobFailure Alain Mazy <alain@mazy.be> parents: 4022 diff changeset	278 jobsEngine_.GetRegistry().SetObserver(*this);
2668 d26dd081df97 saving jobs engine on exit Sebastien Jodogne <s.jodogne@gmail.com> parents: 2665 diff changeset	279 jobsEngine_.Start();
2815 925d8dc03a23 unserialization of jobs from plugins Sebastien Jodogne <s.jodogne@gmail.com> parents: 2808 diff changeset	280 isJobsEngineUnserialized_ = true;
925d8dc03a23 unserialization of jobs from plugins Sebastien Jodogne <s.jodogne@gmail.com> parents: 2808 diff changeset	281
925d8dc03a23 unserialization of jobs from plugins Sebastien Jodogne <s.jodogne@gmail.com> parents: 2808 diff changeset	282 saveJobsThread_ = boost::thread(SaveJobsThread, this, (unitTesting ? 20 : 100));
2668 d26dd081df97 saving jobs engine on exit Sebastien Jodogne <s.jodogne@gmail.com> parents: 2665 diff changeset	283 }
d26dd081df97 saving jobs engine on exit Sebastien Jodogne <s.jodogne@gmail.com> parents: 2665 diff changeset	284
d26dd081df97 saving jobs engine on exit Sebastien Jodogne <s.jodogne@gmail.com> parents: 2665 diff changeset	285
d26dd081df97 saving jobs engine on exit Sebastien Jodogne <s.jodogne@gmail.com> parents: 2665 diff changeset	286 void ServerContext::SaveJobsEngine()
d26dd081df97 saving jobs engine on exit Sebastien Jodogne <s.jodogne@gmail.com> parents: 2665 diff changeset	287 {
3165 1fe524e211af New configuration option: "SaveJobs" to specify whether jobs are stored in the database Sebastien Jodogne <s.jodogne@gmail.com> parents: 3097 diff changeset	288 if (saveJobs_)
1fe524e211af New configuration option: "SaveJobs" to specify whether jobs are stored in the database Sebastien Jodogne <s.jodogne@gmail.com> parents: 3097 diff changeset	289 {
4268 0ae2ca210077 new macro TLOG() to replace VLOG() for trace logs with a category Sebastien Jodogne <s.jodogne@gmail.com> parents: 4265 diff changeset	290 LOG(TRACE) << "Serializing the content of the jobs engine";
2668 d26dd081df97 saving jobs engine on exit Sebastien Jodogne <s.jodogne@gmail.com> parents: 2665 diff changeset	291
3165 1fe524e211af New configuration option: "SaveJobs" to specify whether jobs are stored in the database Sebastien Jodogne <s.jodogne@gmail.com> parents: 3097 diff changeset	292 try
1fe524e211af New configuration option: "SaveJobs" to specify whether jobs are stored in the database Sebastien Jodogne <s.jodogne@gmail.com> parents: 3097 diff changeset	293 {
1fe524e211af New configuration option: "SaveJobs" to specify whether jobs are stored in the database Sebastien Jodogne <s.jodogne@gmail.com> parents: 3097 diff changeset	294 Json::Value value;
1fe524e211af New configuration option: "SaveJobs" to specify whether jobs are stored in the database Sebastien Jodogne <s.jodogne@gmail.com> parents: 3097 diff changeset	295 jobsEngine_.GetRegistry().Serialize(value);
2668 d26dd081df97 saving jobs engine on exit Sebastien Jodogne <s.jodogne@gmail.com> parents: 2665 diff changeset	296
4392 3af1d763763a confining Json::Reader and Json::Writer into Toolbox Sebastien Jodogne <s.jodogne@gmail.com>* parents: 4384 diff changeset	297 std::string serialized;
4394 f7104e9d044c functions to read/write JSON in OrthancPluginCppWrapper.h Sebastien Jodogne <s.jodogne@gmail.com> parents: 4392 diff changeset	298 Toolbox::WriteFastJson(serialized, value);
2668 d26dd081df97 saving jobs engine on exit Sebastien Jodogne <s.jodogne@gmail.com> parents: 2665 diff changeset	299
4607 f75c63aa9de0 differentiating between shared and private global properties Sebastien Jodogne <s.jodogne@gmail.com> parents: 4519 diff changeset	300 index_.SetGlobalProperty(GlobalProperty_JobsRegistry, false /* not shared */, serialized);
3165 1fe524e211af New configuration option: "SaveJobs" to specify whether jobs are stored in the database Sebastien Jodogne <s.jodogne@gmail.com> parents: 3097 diff changeset	301 }
1fe524e211af New configuration option: "SaveJobs" to specify whether jobs are stored in the database Sebastien Jodogne <s.jodogne@gmail.com> parents: 3097 diff changeset	302 catch (OrthancException& e)
1fe524e211af New configuration option: "SaveJobs" to specify whether jobs are stored in the database Sebastien Jodogne <s.jodogne@gmail.com> parents: 3097 diff changeset	303 {
1fe524e211af New configuration option: "SaveJobs" to specify whether jobs are stored in the database Sebastien Jodogne <s.jodogne@gmail.com> parents: 3097 diff changeset	304 LOG(ERROR) << "Cannot serialize the jobs engine: " << e.What();
1fe524e211af New configuration option: "SaveJobs" to specify whether jobs are stored in the database Sebastien Jodogne <s.jodogne@gmail.com> parents: 3097 diff changeset	305 }
2668 d26dd081df97 saving jobs engine on exit Sebastien Jodogne <s.jodogne@gmail.com> parents: 2665 diff changeset	306 }
d26dd081df97 saving jobs engine on exit Sebastien Jodogne <s.jodogne@gmail.com> parents: 2665 diff changeset	307 }
d26dd081df97 saving jobs engine on exit Sebastien Jodogne <s.jodogne@gmail.com> parents: 2665 diff changeset	308
d26dd081df97 saving jobs engine on exit Sebastien Jodogne <s.jodogne@gmail.com> parents: 2665 diff changeset	309
4457 789676a8c96a Refactoring and improvements to the cache of DICOM files in ServerContext Sebastien Jodogne <s.jodogne@gmail.com> parents: 4437 diff changeset	310 void ServerContext::PublishDicomCacheMetrics()
789676a8c96a Refactoring and improvements to the cache of DICOM files in ServerContext Sebastien Jodogne <s.jodogne@gmail.com> parents: 4437 diff changeset	311 {
5337 b376abae664a Metrics can be stored either as floating-point numbers, or as integers Sebastien Jodogne <s.jodogne@gmail.com> parents: 5334 diff changeset	312 metricsRegistry_->SetFloatValue("orthanc_dicom_cache_size",
b376abae664a Metrics can be stored either as floating-point numbers, or as integers Sebastien Jodogne <s.jodogne@gmail.com> parents: 5334 diff changeset	313 static_cast<float>(dicomCache_.GetCurrentSize()) / static_cast<float>(1024 * 1024));
b376abae664a Metrics can be stored either as floating-point numbers, or as integers Sebastien Jodogne <s.jodogne@gmail.com> parents: 5334 diff changeset	314 metricsRegistry_->SetIntegerValue("orthanc_dicom_cache_count", dicomCache_.GetNumberOfItems());
4457 789676a8c96a Refactoring and improvements to the cache of DICOM files in ServerContext Sebastien Jodogne <s.jodogne@gmail.com> parents: 4437 diff changeset	315 }
789676a8c96a Refactoring and improvements to the cache of DICOM files in ServerContext Sebastien Jodogne <s.jodogne@gmail.com> parents: 4437 diff changeset	316
789676a8c96a Refactoring and improvements to the cache of DICOM files in ServerContext Sebastien Jodogne <s.jodogne@gmail.com> parents: 4437 diff changeset	317
1549 e5e975e9b738 refactoring and simplification of StorageAccessor Sebastien Jodogne <s.jodogne@gmail.com> parents: 1548 diff changeset	318 ServerContext::ServerContext(IDatabaseWrapper& database,
2665 389d050a2e66 fix deadlock, speed up unit tests Sebastien Jodogne <s.jodogne@gmail.com> parents: 2626 diff changeset	319 IStorageArea& area,
2950 dc18d5804746 support of JobsHistorySize set to zero Sebastien Jodogne <s.jodogne@gmail.com> parents: 2940 diff changeset	320 bool unitTesting,
dc18d5804746 support of JobsHistorySize set to zero Sebastien Jodogne <s.jodogne@gmail.com> parents: 2940 diff changeset	321 size_t maxCompletedJobs) :
2665 389d050a2e66 fix deadlock, speed up unit tests Sebastien Jodogne <s.jodogne@gmail.com> parents: 2626 diff changeset	322 index_(*this, database, (unitTesting ? 20 : 500)),
1549 e5e975e9b738 refactoring and simplification of StorageAccessor Sebastien Jodogne <s.jodogne@gmail.com> parents: 1548 diff changeset	323 area_(area),
656 08eca5d86aad fixes to cppcheck Sebastien Jodogne <s.jodogne@gmail.com> parents: 409 diff changeset	324 compressionEnabled_(false),
1549 e5e975e9b738 refactoring and simplification of StorageAccessor Sebastien Jodogne <s.jodogne@gmail.com> parents: 1548 diff changeset	325 storeMD5_(true),
4457 789676a8c96a Refactoring and improvements to the cache of DICOM files in ServerContext Sebastien Jodogne <s.jodogne@gmail.com> parents: 4437 diff changeset	326 largeDicomThrottler_(1),
789676a8c96a Refactoring and improvements to the cache of DICOM files in ServerContext Sebastien Jodogne <s.jodogne@gmail.com> parents: 4437 diff changeset	327 dicomCache_(DICOM_CACHE_SIZE),
2738 3a55b77339ff fix deadlock in Lua scripts Sebastien Jodogne <s.jodogne@gmail.com> parents: 2716 diff changeset	328 mainLua_(*this),
3a55b77339ff fix deadlock in Lua scripts Sebastien Jodogne <s.jodogne@gmail.com> parents: 2716 diff changeset	329 filterLua_(*this),
3a55b77339ff fix deadlock in Lua scripts Sebastien Jodogne <s.jodogne@gmail.com> parents: 2716 diff changeset	330 luaListener_(*this),
2950 dc18d5804746 support of JobsHistorySize set to zero Sebastien Jodogne <s.jodogne@gmail.com> parents: 2940 diff changeset	331 jobsEngine_(maxCompletedJobs),
2136 dd609a99d39a uniformization of the macro naming Sebastien Jodogne <s.jodogne@gmail.com> parents: 2135 diff changeset	332 #if ORTHANC_ENABLE_PLUGINS == 1
1232 f1c01451a8ee Introspection of plugins, Plugins can extend Orthanc Explorer with custom JavaScript Sebastien Jodogne <s.jodogne@gmail.com> parents: 1198 diff changeset	333 plugins_(NULL),
1632 eb8fbcf008b5 fix build with plugins disabled Sebastien Jodogne <s.jodogne@gmail.com> parents: 1582 diff changeset	334 #endif
1436 0a3e3be59094 uncoupling of SignalChange for Lua scripts Sebastien Jodogne <s.jodogne@gmail.com> parents: 1434 diff changeset	335 done_(false),
2673 8e0bc055d18c JobsRegistry::IObserver Sebastien Jodogne <s.jodogne@gmail.com> parents: 2672 diff changeset	336 haveJobsChanged_(false),
3174 8ea7c4546c3a primitives to collect metrics in Orthanc Sebastien Jodogne <s.jodogne@gmail.com> parents: 3165 diff changeset	337 isJobsEngineUnserialized_(false),
3533 2090ec6a83a5 create a default user if none is provided, while issuing a warning in Orthanc Explorer Sebastien Jodogne <s.jodogne@gmail.com> parents: 3346 diff changeset	338 metricsRegistry_(new MetricsRegistry),
3535 41365091a41e display a security warning in the logs at startup when ExecuteLuaEnabled is true Alain Mazy <alain@mazy.be> parents: 3534 diff changeset	339 isHttpServerSecure_(true),
3813 aaaa442bfe39 moving SetOverwriteInstances from ServerIndex to ServerContext Sebastien Jodogne <s.jodogne@gmail.com> parents: 3736 diff changeset	340 isExecuteLuaEnabled_(false),
5200 f8f1c4a9a216 New configuration option 'RestApiWriteToFileSystemEnabled' Alain Mazy <am@osimis.io> parents: 5185 diff changeset	341 isRestApiWriteToFileSystemEnabled_(false),
3894 8f7ad4989fec transcoding to uncompressed transfer syntaxes over DICOM protocol is implemented Sebastien Jodogne <s.jodogne@gmail.com> parents: 3839 diff changeset	342 overwriteInstances_(false),
3939 c205f670098e new configuration options: BuiltinDecoderTranscoderOrder and IngestTranscoding Sebastien Jodogne <s.jodogne@gmail.com> parents: 3938 diff changeset	343 dcmtkTranscoder_(new DcmtkTranscoder),
4375 208029732d51 New config option "DeidentifyDimseQueryLogs" Mark Poscablo <Mark.Poscablo@varian.com> parents: 4274 diff changeset	344 isIngestTranscoding_(false),
4384 7e0d015ad109 new configuration options IngestTranscodingOfUncompressed and IngestTranscodingOfCompressed Sebastien Jodogne <s.jodogne@gmail.com> parents: 4376 diff changeset	345 ingestTranscodingOfUncompressed_(true),
7e0d015ad109 new configuration options IngestTranscodingOfUncompressed and IngestTranscodingOfCompressed Sebastien Jodogne <s.jodogne@gmail.com> parents: 4376 diff changeset	346 ingestTranscodingOfCompressed_(true),
4465 fe774d8e904b New configuration option: "DicomScuPreferredTransferSyntax" to control transcoding in C-STORE SCU Sebastien Jodogne <s.jodogne@gmail.com> parents: 4460 diff changeset	347 preferredTransferSyntax_(DicomTransferSyntax_LittleEndianExplicit),
5111 7547c7dfd017 /tools/metrics-prometheus: added orthanc_last_change and orthanc_up_time_s Alain Mazy <am@osimis.io> parents: 5060 diff changeset	348 deidentifyLogs_(false),
7547c7dfd017 /tools/metrics-prometheus: added orthanc_last_change and orthanc_up_time_s Alain Mazy <am@osimis.io> parents: 5060 diff changeset	349 serverStartTimeUtc_(boost::posix_time::second_clock::universal_time())
224 4eb0c7ce86c9 refactoring for store Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	350 {
3939 c205f670098e new configuration options: BuiltinDecoderTranscoderOrder and IngestTranscoding Sebastien Jodogne <s.jodogne@gmail.com> parents: 3938 diff changeset	351 try
2940 4767d36679ed refactoring access to Orthanc configuration Sebastien Jodogne <s.jodogne@gmail.com> parents: 2925 diff changeset	352 {
3939 c205f670098e new configuration options: BuiltinDecoderTranscoderOrder and IngestTranscoding Sebastien Jodogne <s.jodogne@gmail.com> parents: 3938 diff changeset	353 unsigned int lossyQuality;
c205f670098e new configuration options: BuiltinDecoderTranscoderOrder and IngestTranscoding Sebastien Jodogne <s.jodogne@gmail.com> parents: 3938 diff changeset	354
c205f670098e new configuration options: BuiltinDecoderTranscoderOrder and IngestTranscoding Sebastien Jodogne <s.jodogne@gmail.com> parents: 3938 diff changeset	355 {
c205f670098e new configuration options: BuiltinDecoderTranscoderOrder and IngestTranscoding Sebastien Jodogne <s.jodogne@gmail.com> parents: 3938 diff changeset	356 OrthancConfiguration::ReaderLock lock;
2965 9c0b0a6d8b54 MediaArchiveSize configuration option Sebastien Jodogne <s.jodogne@gmail.com> parents: 2956 diff changeset	357
3939 c205f670098e new configuration options: BuiltinDecoderTranscoderOrder and IngestTranscoding Sebastien Jodogne <s.jodogne@gmail.com> parents: 3938 diff changeset	358 queryRetrieveArchive_.reset(
c205f670098e new configuration options: BuiltinDecoderTranscoderOrder and IngestTranscoding Sebastien Jodogne <s.jodogne@gmail.com> parents: 3938 diff changeset	359 new SharedArchive(lock.GetConfiguration().GetUnsignedIntegerParameter("QueryRetrieveSize", 100)));
c205f670098e new configuration options: BuiltinDecoderTranscoderOrder and IngestTranscoding Sebastien Jodogne <s.jodogne@gmail.com> parents: 3938 diff changeset	360 mediaArchive_.reset(
c205f670098e new configuration options: BuiltinDecoderTranscoderOrder and IngestTranscoding Sebastien Jodogne <s.jodogne@gmail.com> parents: 3938 diff changeset	361 new SharedArchive(lock.GetConfiguration().GetUnsignedIntegerParameter("MediaArchiveSize", 1)));
4143 1ec3e1e18f50 Add missing tag "Retrieve AE Title (0008,0054)" in C-FIND SCP responses Sebastien Jodogne <s.jodogne@gmail.com> parents: 4140 diff changeset	362 defaultLocalAet_ = lock.GetConfiguration().GetOrthancAET();
3939 c205f670098e new configuration options: BuiltinDecoderTranscoderOrder and IngestTranscoding Sebastien Jodogne <s.jodogne@gmail.com> parents: 3938 diff changeset	363 jobsEngine_.SetWorkersCount(lock.GetConfiguration().GetUnsignedIntegerParameter("ConcurrentJobs", 2));
c205f670098e new configuration options: BuiltinDecoderTranscoderOrder and IngestTranscoding Sebastien Jodogne <s.jodogne@gmail.com> parents: 3938 diff changeset	364 saveJobs_ = lock.GetConfiguration().GetBooleanParameter("SaveJobs", true);
c205f670098e new configuration options: BuiltinDecoderTranscoderOrder and IngestTranscoding Sebastien Jodogne <s.jodogne@gmail.com> parents: 3938 diff changeset	365 metricsRegistry_->SetEnabled(lock.GetConfiguration().GetBooleanParameter("MetricsEnabled", true));
c205f670098e new configuration options: BuiltinDecoderTranscoderOrder and IngestTranscoding Sebastien Jodogne <s.jodogne@gmail.com> parents: 3938 diff changeset	366
c205f670098e new configuration options: BuiltinDecoderTranscoderOrder and IngestTranscoding Sebastien Jodogne <s.jodogne@gmail.com> parents: 3938 diff changeset	367 // New configuration options in Orthanc 1.5.1
c205f670098e new configuration options: BuiltinDecoderTranscoderOrder and IngestTranscoding Sebastien Jodogne <s.jodogne@gmail.com> parents: 3938 diff changeset	368 findStorageAccessMode_ = StringToFindStorageAccessMode(lock.GetConfiguration().GetStringParameter("StorageAccessOnFind", "Always"));
c205f670098e new configuration options: BuiltinDecoderTranscoderOrder and IngestTranscoding Sebastien Jodogne <s.jodogne@gmail.com> parents: 3938 diff changeset	369 limitFindInstances_ = lock.GetConfiguration().GetUnsignedIntegerParameter("LimitFindInstances", 0);
c205f670098e new configuration options: BuiltinDecoderTranscoderOrder and IngestTranscoding Sebastien Jodogne <s.jodogne@gmail.com> parents: 3938 diff changeset	370 limitFindResults_ = lock.GetConfiguration().GetUnsignedIntegerParameter("LimitFindResults", 0);
c205f670098e new configuration options: BuiltinDecoderTranscoderOrder and IngestTranscoding Sebastien Jodogne <s.jodogne@gmail.com> parents: 3938 diff changeset	371
c205f670098e new configuration options: BuiltinDecoderTranscoderOrder and IngestTranscoding Sebastien Jodogne <s.jodogne@gmail.com> parents: 3938 diff changeset	372 // New configuration option in Orthanc 1.6.0
c205f670098e new configuration options: BuiltinDecoderTranscoderOrder and IngestTranscoding Sebastien Jodogne <s.jodogne@gmail.com> parents: 3938 diff changeset	373 storageCommitmentReports_.reset(new StorageCommitmentReports(lock.GetConfiguration().GetUnsignedIntegerParameter("StorageCommitmentReportsSize", 100)));
c205f670098e new configuration options: BuiltinDecoderTranscoderOrder and IngestTranscoding Sebastien Jodogne <s.jodogne@gmail.com> parents: 3938 diff changeset	374
c205f670098e new configuration options: BuiltinDecoderTranscoderOrder and IngestTranscoding Sebastien Jodogne <s.jodogne@gmail.com> parents: 3938 diff changeset	375 // New options in Orthanc 1.7.0
c205f670098e new configuration options: BuiltinDecoderTranscoderOrder and IngestTranscoding Sebastien Jodogne <s.jodogne@gmail.com> parents: 3938 diff changeset	376 transcodeDicomProtocol_ = lock.GetConfiguration().GetBooleanParameter("TranscodeDicomProtocol", true);
c205f670098e new configuration options: BuiltinDecoderTranscoderOrder and IngestTranscoding Sebastien Jodogne <s.jodogne@gmail.com> parents: 3938 diff changeset	377 builtinDecoderTranscoderOrder_ = StringToBuiltinDecoderTranscoderOrder(lock.GetConfiguration().GetStringParameter("BuiltinDecoderTranscoderOrder", "After"));
c205f670098e new configuration options: BuiltinDecoderTranscoderOrder and IngestTranscoding Sebastien Jodogne <s.jodogne@gmail.com> parents: 3938 diff changeset	378 lossyQuality = lock.GetConfiguration().GetUnsignedIntegerParameter("DicomLossyTranscodingQuality", 90);
3677 4182cde57afb refactoring FindStorageAccessMode Sebastien Jodogne <s.jodogne@gmail.com> parents: 3640 diff changeset	379
3939 c205f670098e new configuration options: BuiltinDecoderTranscoderOrder and IngestTranscoding Sebastien Jodogne <s.jodogne@gmail.com> parents: 3938 diff changeset	380 std::string s;
c205f670098e new configuration options: BuiltinDecoderTranscoderOrder and IngestTranscoding Sebastien Jodogne <s.jodogne@gmail.com> parents: 3938 diff changeset	381 if (lock.GetConfiguration().LookupStringParameter(s, "IngestTranscoding"))
c205f670098e new configuration options: BuiltinDecoderTranscoderOrder and IngestTranscoding Sebastien Jodogne <s.jodogne@gmail.com> parents: 3938 diff changeset	382 {
c205f670098e new configuration options: BuiltinDecoderTranscoderOrder and IngestTranscoding Sebastien Jodogne <s.jodogne@gmail.com> parents: 3938 diff changeset	383 if (LookupTransferSyntax(ingestTransferSyntax_, s))
c205f670098e new configuration options: BuiltinDecoderTranscoderOrder and IngestTranscoding Sebastien Jodogne <s.jodogne@gmail.com> parents: 3938 diff changeset	384 {
c205f670098e new configuration options: BuiltinDecoderTranscoderOrder and IngestTranscoding Sebastien Jodogne <s.jodogne@gmail.com> parents: 3938 diff changeset	385 isIngestTranscoding_ = true;
c205f670098e new configuration options: BuiltinDecoderTranscoderOrder and IngestTranscoding Sebastien Jodogne <s.jodogne@gmail.com> parents: 3938 diff changeset	386 LOG(WARNING) << "Incoming DICOM instances will automatically be transcoded to "
c205f670098e new configuration options: BuiltinDecoderTranscoderOrder and IngestTranscoding Sebastien Jodogne <s.jodogne@gmail.com> parents: 3938 diff changeset	387 << "transfer syntax: " << GetTransferSyntaxUid(ingestTransferSyntax_);
4384 7e0d015ad109 new configuration options IngestTranscodingOfUncompressed and IngestTranscodingOfCompressed Sebastien Jodogne <s.jodogne@gmail.com> parents: 4376 diff changeset	388
4465 fe774d8e904b New configuration option: "DicomScuPreferredTransferSyntax" to control transcoding in C-STORE SCU Sebastien Jodogne <s.jodogne@gmail.com> parents: 4460 diff changeset	389 // New options in Orthanc 1.8.2
4384 7e0d015ad109 new configuration options IngestTranscodingOfUncompressed and IngestTranscodingOfCompressed Sebastien Jodogne <s.jodogne@gmail.com> parents: 4376 diff changeset	390 ingestTranscodingOfUncompressed_ = lock.GetConfiguration().GetBooleanParameter("IngestTranscodingOfUncompressed", true);
7e0d015ad109 new configuration options IngestTranscodingOfUncompressed and IngestTranscodingOfCompressed Sebastien Jodogne <s.jodogne@gmail.com> parents: 4376 diff changeset	391 ingestTranscodingOfCompressed_ = lock.GetConfiguration().GetBooleanParameter("IngestTranscodingOfCompressed", true);
7e0d015ad109 new configuration options IngestTranscodingOfUncompressed and IngestTranscodingOfCompressed Sebastien Jodogne <s.jodogne@gmail.com> parents: 4376 diff changeset	392
7e0d015ad109 new configuration options IngestTranscodingOfUncompressed and IngestTranscodingOfCompressed Sebastien Jodogne <s.jodogne@gmail.com> parents: 4376 diff changeset	393 LOG(WARNING) << " Ingest transcoding will "
7e0d015ad109 new configuration options IngestTranscodingOfUncompressed and IngestTranscodingOfCompressed Sebastien Jodogne <s.jodogne@gmail.com> parents: 4376 diff changeset	394 << (ingestTranscodingOfUncompressed_ ? "be applied" : "not be applied")
7e0d015ad109 new configuration options IngestTranscodingOfUncompressed and IngestTranscodingOfCompressed Sebastien Jodogne <s.jodogne@gmail.com> parents: 4376 diff changeset	395 << " to uncompressed transfer syntaxes (Little Endian Implicit/Explicit, Big Endian Explicit)";
7e0d015ad109 new configuration options IngestTranscodingOfUncompressed and IngestTranscodingOfCompressed Sebastien Jodogne <s.jodogne@gmail.com> parents: 4376 diff changeset	396
7e0d015ad109 new configuration options IngestTranscodingOfUncompressed and IngestTranscodingOfCompressed Sebastien Jodogne <s.jodogne@gmail.com> parents: 4376 diff changeset	397 LOG(WARNING) << " Ingest transcoding will "
7e0d015ad109 new configuration options IngestTranscodingOfUncompressed and IngestTranscodingOfCompressed Sebastien Jodogne <s.jodogne@gmail.com> parents: 4376 diff changeset	398 << (ingestTranscodingOfCompressed_ ? "be applied" : "not be applied")
7e0d015ad109 new configuration options IngestTranscodingOfUncompressed and IngestTranscodingOfCompressed Sebastien Jodogne <s.jodogne@gmail.com> parents: 4376 diff changeset	399 << " to compressed transfer syntaxes";
3939 c205f670098e new configuration options: BuiltinDecoderTranscoderOrder and IngestTranscoding Sebastien Jodogne <s.jodogne@gmail.com> parents: 3938 diff changeset	400 }
c205f670098e new configuration options: BuiltinDecoderTranscoderOrder and IngestTranscoding Sebastien Jodogne <s.jodogne@gmail.com> parents: 3938 diff changeset	401 else
c205f670098e new configuration options: BuiltinDecoderTranscoderOrder and IngestTranscoding Sebastien Jodogne <s.jodogne@gmail.com> parents: 3938 diff changeset	402 {
c205f670098e new configuration options: BuiltinDecoderTranscoderOrder and IngestTranscoding Sebastien Jodogne <s.jodogne@gmail.com> parents: 3938 diff changeset	403 throw OrthancException(ErrorCode_ParameterOutOfRange,
c205f670098e new configuration options: BuiltinDecoderTranscoderOrder and IngestTranscoding Sebastien Jodogne <s.jodogne@gmail.com> parents: 3938 diff changeset	404 "Unknown transfer syntax for ingest transcoding: " + s);
c205f670098e new configuration options: BuiltinDecoderTranscoderOrder and IngestTranscoding Sebastien Jodogne <s.jodogne@gmail.com> parents: 3938 diff changeset	405 }
c205f670098e new configuration options: BuiltinDecoderTranscoderOrder and IngestTranscoding Sebastien Jodogne <s.jodogne@gmail.com> parents: 3938 diff changeset	406 }
c205f670098e new configuration options: BuiltinDecoderTranscoderOrder and IngestTranscoding Sebastien Jodogne <s.jodogne@gmail.com> parents: 3938 diff changeset	407 else
c205f670098e new configuration options: BuiltinDecoderTranscoderOrder and IngestTranscoding Sebastien Jodogne <s.jodogne@gmail.com> parents: 3938 diff changeset	408 {
3941 771dbd9eb3bd class CleaningInstancesJob to share cleaning code by merge/split jobs Sebastien Jodogne <s.jodogne@gmail.com> parents: 3939 diff changeset	409 isIngestTranscoding_ = false;
3939 c205f670098e new configuration options: BuiltinDecoderTranscoderOrder and IngestTranscoding Sebastien Jodogne <s.jodogne@gmail.com> parents: 3938 diff changeset	410 LOG(INFO) << "Automated transcoding of incoming DICOM instances is disabled";
c205f670098e new configuration options: BuiltinDecoderTranscoderOrder and IngestTranscoding Sebastien Jodogne <s.jodogne@gmail.com> parents: 3938 diff changeset	411 }
4375 208029732d51 New config option "DeidentifyDimseQueryLogs" Mark Poscablo <Mark.Poscablo@varian.com> parents: 4274 diff changeset	412
4465 fe774d8e904b New configuration option: "DicomScuPreferredTransferSyntax" to control transcoding in C-STORE SCU Sebastien Jodogne <s.jodogne@gmail.com> parents: 4460 diff changeset	413 // New options in Orthanc 1.8.2
4376 b002f9abe802 review of changeset 4375:208029732d51 Sebastien Jodogne <s.jodogne@gmail.com> parents: 4375 diff changeset	414 if (lock.GetConfiguration().GetBooleanParameter("DeidentifyLogs", true))
4375 208029732d51 New config option "DeidentifyDimseQueryLogs" Mark Poscablo <Mark.Poscablo@varian.com> parents: 4274 diff changeset	415 {
4376 b002f9abe802 review of changeset 4375:208029732d51 Sebastien Jodogne <s.jodogne@gmail.com> parents: 4375 diff changeset	416 deidentifyLogs_ = true;
b002f9abe802 review of changeset 4375:208029732d51 Sebastien Jodogne <s.jodogne@gmail.com> parents: 4375 diff changeset	417 CLOG(INFO, DICOM) << "Deidentification of log contents (notably for DIMSE queries) is enabled";
4375 208029732d51 New config option "DeidentifyDimseQueryLogs" Mark Poscablo <Mark.Poscablo@varian.com> parents: 4274 diff changeset	418
4376 b002f9abe802 review of changeset 4375:208029732d51 Sebastien Jodogne <s.jodogne@gmail.com> parents: 4375 diff changeset	419 DicomVersion version = StringToDicomVersion(
5334 5b2a5cc64cb1 upgraded anonymization to Basic Profile of PS 3.15-2023b Table E.1-1 Sebastien Jodogne <s.jodogne@gmail.com> parents: 5333 diff changeset	420 lock.GetConfiguration().GetStringParameter("DeidentifyLogsDicomVersion", "2023b"));
4375 208029732d51 New config option "DeidentifyDimseQueryLogs" Mark Poscablo <Mark.Poscablo@varian.com> parents: 4274 diff changeset	421 CLOG(INFO, DICOM) << "Version of DICOM standard used for deidentification is "
4376 b002f9abe802 review of changeset 4375:208029732d51 Sebastien Jodogne <s.jodogne@gmail.com> parents: 4375 diff changeset	422 << EnumerationToString(version);
b002f9abe802 review of changeset 4375:208029732d51 Sebastien Jodogne <s.jodogne@gmail.com> parents: 4375 diff changeset	423
b002f9abe802 review of changeset 4375:208029732d51 Sebastien Jodogne <s.jodogne@gmail.com> parents: 4375 diff changeset	424 logsDeidentifierRules_.SetupAnonymization(version);
4375 208029732d51 New config option "DeidentifyDimseQueryLogs" Mark Poscablo <Mark.Poscablo@varian.com> parents: 4274 diff changeset	425 }
208029732d51 New config option "DeidentifyDimseQueryLogs" Mark Poscablo <Mark.Poscablo@varian.com> parents: 4274 diff changeset	426 else
208029732d51 New config option "DeidentifyDimseQueryLogs" Mark Poscablo <Mark.Poscablo@varian.com> parents: 4274 diff changeset	427 {
4376 b002f9abe802 review of changeset 4375:208029732d51 Sebastien Jodogne <s.jodogne@gmail.com> parents: 4375 diff changeset	428 deidentifyLogs_ = false;
b002f9abe802 review of changeset 4375:208029732d51 Sebastien Jodogne <s.jodogne@gmail.com> parents: 4375 diff changeset	429 CLOG(INFO, DICOM) << "Deidentification of log contents (notably for DIMSE queries) is disabled";
4375 208029732d51 New config option "DeidentifyDimseQueryLogs" Mark Poscablo <Mark.Poscablo@varian.com> parents: 4274 diff changeset	430 }
4465 fe774d8e904b New configuration option: "DicomScuPreferredTransferSyntax" to control transcoding in C-STORE SCU Sebastien Jodogne <s.jodogne@gmail.com> parents: 4460 diff changeset	431
4473 68f52897c119 new URIs: /tools/accepted-transfer-syntaxes and /tools/unknown-sop-class-accepted to replace Lua callbacks for transfer syntaxes Sebastien Jodogne <s.jodogne@gmail.com> parents: 4465 diff changeset	432 // New options in Orthanc 1.9.0
4465 fe774d8e904b New configuration option: "DicomScuPreferredTransferSyntax" to control transcoding in C-STORE SCU Sebastien Jodogne <s.jodogne@gmail.com> parents: 4460 diff changeset	433 if (lock.GetConfiguration().LookupStringParameter(s, "DicomScuPreferredTransferSyntax") &&
fe774d8e904b New configuration option: "DicomScuPreferredTransferSyntax" to control transcoding in C-STORE SCU Sebastien Jodogne <s.jodogne@gmail.com> parents: 4460 diff changeset	434 !LookupTransferSyntax(preferredTransferSyntax_, s))
fe774d8e904b New configuration option: "DicomScuPreferredTransferSyntax" to control transcoding in C-STORE SCU Sebastien Jodogne <s.jodogne@gmail.com> parents: 4460 diff changeset	435 {
fe774d8e904b New configuration option: "DicomScuPreferredTransferSyntax" to control transcoding in C-STORE SCU Sebastien Jodogne <s.jodogne@gmail.com> parents: 4460 diff changeset	436 throw OrthancException(ErrorCode_ParameterOutOfRange,
fe774d8e904b New configuration option: "DicomScuPreferredTransferSyntax" to control transcoding in C-STORE SCU Sebastien Jodogne <s.jodogne@gmail.com> parents: 4460 diff changeset	437 "Unknown preferred transfer syntax: " + s);
fe774d8e904b New configuration option: "DicomScuPreferredTransferSyntax" to control transcoding in C-STORE SCU Sebastien Jodogne <s.jodogne@gmail.com> parents: 4460 diff changeset	438 }
fe774d8e904b New configuration option: "DicomScuPreferredTransferSyntax" to control transcoding in C-STORE SCU Sebastien Jodogne <s.jodogne@gmail.com> parents: 4460 diff changeset	439
fe774d8e904b New configuration option: "DicomScuPreferredTransferSyntax" to control transcoding in C-STORE SCU Sebastien Jodogne <s.jodogne@gmail.com> parents: 4460 diff changeset	440 CLOG(INFO, DICOM) << "Preferred transfer syntax for Orthanc C-STORE SCU: "
fe774d8e904b New configuration option: "DicomScuPreferredTransferSyntax" to control transcoding in C-STORE SCU Sebastien Jodogne <s.jodogne@gmail.com> parents: 4460 diff changeset	441 << GetTransferSyntaxUid(preferredTransferSyntax_);
4473 68f52897c119 new URIs: /tools/accepted-transfer-syntaxes and /tools/unknown-sop-class-accepted to replace Lua callbacks for transfer syntaxes Sebastien Jodogne <s.jodogne@gmail.com> parents: 4465 diff changeset	442
68f52897c119 new URIs: /tools/accepted-transfer-syntaxes and /tools/unknown-sop-class-accepted to replace Lua callbacks for transfer syntaxes Sebastien Jodogne <s.jodogne@gmail.com> parents: 4465 diff changeset	443 lock.GetConfiguration().GetAcceptedTransferSyntaxes(acceptedTransferSyntaxes_);
68f52897c119 new URIs: /tools/accepted-transfer-syntaxes and /tools/unknown-sop-class-accepted to replace Lua callbacks for transfer syntaxes Sebastien Jodogne <s.jodogne@gmail.com> parents: 4465 diff changeset	444
68f52897c119 new URIs: /tools/accepted-transfer-syntaxes and /tools/unknown-sop-class-accepted to replace Lua callbacks for transfer syntaxes Sebastien Jodogne <s.jodogne@gmail.com> parents: 4465 diff changeset	445 isUnknownSopClassAccepted_ = lock.GetConfiguration().GetBooleanParameter("UnknownSopClassAccepted", false);
3939 c205f670098e new configuration options: BuiltinDecoderTranscoderOrder and IngestTranscoding Sebastien Jodogne <s.jodogne@gmail.com> parents: 3938 diff changeset	446 }
3894 8f7ad4989fec transcoding to uncompressed transfer syntaxes over DICOM protocol is implemented Sebastien Jodogne <s.jodogne@gmail.com> parents: 3839 diff changeset	447
3939 c205f670098e new configuration options: BuiltinDecoderTranscoderOrder and IngestTranscoding Sebastien Jodogne <s.jodogne@gmail.com> parents: 3938 diff changeset	448 jobsEngine_.SetThreadSleep(unitTesting ? 20 : 200);
2940 4767d36679ed refactoring access to Orthanc configuration Sebastien Jodogne <s.jodogne@gmail.com> parents: 2925 diff changeset	449
3939 c205f670098e new configuration options: BuiltinDecoderTranscoderOrder and IngestTranscoding Sebastien Jodogne <s.jodogne@gmail.com> parents: 3938 diff changeset	450 listeners_.push_back(ServerListener(luaListener_, "Lua"));
c205f670098e new configuration options: BuiltinDecoderTranscoderOrder and IngestTranscoding Sebastien Jodogne <s.jodogne@gmail.com> parents: 3938 diff changeset	451 changeThread_ = boost::thread(ChangeThread, this, (unitTesting ? 20 : 100));
5182 cddf28cfcd8d style Sebastien Jodogne <s.jodogne@gmail.com> parents: 5181 diff changeset	452
5159 f5907aecbaed conditional usage of malloc_trim Alain Mazy <am@osimis.io> parents: 5152 diff changeset	453 #if HAVE_MALLOC_TRIM == 1
5346 566e8d32bd3a Reduce the frequency of memory trimming from 100ms to 30s to avoid high idle CPU load Alain Mazy <am@osimis.io> parents: 5337 diff changeset	454 LOG(INFO) << "Starting memory trimming thread at 30 seconds interval";
566e8d32bd3a Reduce the frequency of memory trimming from 100ms to 30s to avoid high idle CPU load Alain Mazy <am@osimis.io> parents: 5337 diff changeset	455 memoryTrimmingThread_ = boost::thread(MemoryTrimmingThread, this, 30);
5159 f5907aecbaed conditional usage of malloc_trim Alain Mazy <am@osimis.io> parents: 5152 diff changeset	456 #else
5183 5ec3dcdf78b9 renamed HousekeeperThread as MemoryTrimmingThread to avoid confusion with Housekeeper plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: 5182 diff changeset	457 LOG(INFO) << "Your platform does not support malloc_trim(), not starting the memory trimming thread";
5159 f5907aecbaed conditional usage of malloc_trim Alain Mazy <am@osimis.io> parents: 5152 diff changeset	458 #endif
5182 cddf28cfcd8d style Sebastien Jodogne <s.jodogne@gmail.com> parents: 5181 diff changeset	459
3939 c205f670098e new configuration options: BuiltinDecoderTranscoderOrder and IngestTranscoding Sebastien Jodogne <s.jodogne@gmail.com> parents: 3938 diff changeset	460 dynamic_cast<DcmtkTranscoder&>(*dcmtkTranscoder_).SetLossyQuality(lossyQuality);
c205f670098e new configuration options: BuiltinDecoderTranscoderOrder and IngestTranscoding Sebastien Jodogne <s.jodogne@gmail.com> parents: 3938 diff changeset	461 }
c205f670098e new configuration options: BuiltinDecoderTranscoderOrder and IngestTranscoding Sebastien Jodogne <s.jodogne@gmail.com> parents: 3938 diff changeset	462 catch (OrthancException&)
c205f670098e new configuration options: BuiltinDecoderTranscoderOrder and IngestTranscoding Sebastien Jodogne <s.jodogne@gmail.com> parents: 3938 diff changeset	463 {
c205f670098e new configuration options: BuiltinDecoderTranscoderOrder and IngestTranscoding Sebastien Jodogne <s.jodogne@gmail.com> parents: 3938 diff changeset	464 Stop();
c205f670098e new configuration options: BuiltinDecoderTranscoderOrder and IngestTranscoding Sebastien Jodogne <s.jodogne@gmail.com> parents: 3938 diff changeset	465 throw;
c205f670098e new configuration options: BuiltinDecoderTranscoderOrder and IngestTranscoding Sebastien Jodogne <s.jodogne@gmail.com> parents: 3938 diff changeset	466 }
224 4eb0c7ce86c9 refactoring for store Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	467 }
4eb0c7ce86c9 refactoring for store Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	468
1436 0a3e3be59094 uncoupling of SignalChange for Lua scripts Sebastien Jodogne <s.jodogne@gmail.com> parents: 1434 diff changeset	469
0a3e3be59094 uncoupling of SignalChange for Lua scripts Sebastien Jodogne <s.jodogne@gmail.com> parents: 1434 diff changeset	470
0a3e3be59094 uncoupling of SignalChange for Lua scripts Sebastien Jodogne <s.jodogne@gmail.com> parents: 1434 diff changeset	471 ServerContext::~ServerContext()
0a3e3be59094 uncoupling of SignalChange for Lua scripts Sebastien Jodogne <s.jodogne@gmail.com> parents: 1434 diff changeset	472 {
1453 c0bdc47165ef code to warn about possible threading problems Sebastien Jodogne <s.jodogne@gmail.com> parents: 1447 diff changeset	473 if (!done_)
c0bdc47165ef code to warn about possible threading problems Sebastien Jodogne <s.jodogne@gmail.com> parents: 1447 diff changeset	474 {
c0bdc47165ef code to warn about possible threading problems Sebastien Jodogne <s.jodogne@gmail.com> parents: 1447 diff changeset	475 LOG(ERROR) << "INTERNAL ERROR: ServerContext::Stop() should be invoked manually to avoid mess in the destruction order!";
c0bdc47165ef code to warn about possible threading problems Sebastien Jodogne <s.jodogne@gmail.com> parents: 1447 diff changeset	476 Stop();
c0bdc47165ef code to warn about possible threading problems Sebastien Jodogne <s.jodogne@gmail.com> parents: 1447 diff changeset	477 }
1447 5ba7471780ae refactoring: HttpToolbox, DumpJson in Lua Sebastien Jodogne <s.jodogne@gmail.com> parents: 1436 diff changeset	478 }
5ba7471780ae refactoring: HttpToolbox, DumpJson in Lua Sebastien Jodogne <s.jodogne@gmail.com> parents: 1436 diff changeset	479
1436 0a3e3be59094 uncoupling of SignalChange for Lua scripts Sebastien Jodogne <s.jodogne@gmail.com> parents: 1434 diff changeset	480
1447 5ba7471780ae refactoring: HttpToolbox, DumpJson in Lua Sebastien Jodogne <s.jodogne@gmail.com> parents: 1436 diff changeset	481 void ServerContext::Stop()
5ba7471780ae refactoring: HttpToolbox, DumpJson in Lua Sebastien Jodogne <s.jodogne@gmail.com> parents: 1436 diff changeset	482 {
5ba7471780ae refactoring: HttpToolbox, DumpJson in Lua Sebastien Jodogne <s.jodogne@gmail.com> parents: 1436 diff changeset	483 if (!done_)
1436 0a3e3be59094 uncoupling of SignalChange for Lua scripts Sebastien Jodogne <s.jodogne@gmail.com> parents: 1434 diff changeset	484 {
1459 040d58493998 security Sebastien Jodogne <s.jodogne@gmail.com> parents: 1456 diff changeset	485 {
3947 cf6eb4fc6841 fix issue 179: use a shared mutex to avoid deadlock in python plugins Alain Mazy <alain@mazy.be> parents: 3945 diff changeset	486 boost::unique_lock<boost::shared_mutex> lock(listenersMutex_);
1459 040d58493998 security Sebastien Jodogne <s.jodogne@gmail.com> parents: 1456 diff changeset	487 listeners_.clear();
040d58493998 security Sebastien Jodogne <s.jodogne@gmail.com> parents: 1456 diff changeset	488 }
040d58493998 security Sebastien Jodogne <s.jodogne@gmail.com> parents: 1456 diff changeset	489
1447 5ba7471780ae refactoring: HttpToolbox, DumpJson in Lua Sebastien Jodogne <s.jodogne@gmail.com> parents: 1436 diff changeset	490 done_ = true;
5ba7471780ae refactoring: HttpToolbox, DumpJson in Lua Sebastien Jodogne <s.jodogne@gmail.com> parents: 1436 diff changeset	491
5ba7471780ae refactoring: HttpToolbox, DumpJson in Lua Sebastien Jodogne <s.jodogne@gmail.com> parents: 1436 diff changeset	492 if (changeThread_.joinable())
5ba7471780ae refactoring: HttpToolbox, DumpJson in Lua Sebastien Jodogne <s.jodogne@gmail.com> parents: 1436 diff changeset	493 {
5ba7471780ae refactoring: HttpToolbox, DumpJson in Lua Sebastien Jodogne <s.jodogne@gmail.com> parents: 1436 diff changeset	494 changeThread_.join();
5ba7471780ae refactoring: HttpToolbox, DumpJson in Lua Sebastien Jodogne <s.jodogne@gmail.com> parents: 1436 diff changeset	495 }
1453 c0bdc47165ef code to warn about possible threading problems Sebastien Jodogne <s.jodogne@gmail.com> parents: 1447 diff changeset	496
2672 3efc44fac209 periodically saving jobs Sebastien Jodogne <s.jodogne@gmail.com> parents: 2671 diff changeset	497 if (saveJobsThread_.joinable())
3efc44fac209 periodically saving jobs Sebastien Jodogne <s.jodogne@gmail.com> parents: 2671 diff changeset	498 {
3efc44fac209 periodically saving jobs Sebastien Jodogne <s.jodogne@gmail.com> parents: 2671 diff changeset	499 saveJobsThread_.join();
3efc44fac209 periodically saving jobs Sebastien Jodogne <s.jodogne@gmail.com> parents: 2671 diff changeset	500 }
3efc44fac209 periodically saving jobs Sebastien Jodogne <s.jodogne@gmail.com> parents: 2671 diff changeset	501
5183 5ec3dcdf78b9 renamed HousekeeperThread as MemoryTrimmingThread to avoid confusion with Housekeeper plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: 5182 diff changeset	502 if (memoryTrimmingThread_.joinable())
5181 65b05b44ae4c properly finalizing the housekeeper thread that periodically calls malloc_trim() Sebastien Jodogne <s.jodogne@gmail.com> parents: 5176 diff changeset	503 {
5183 5ec3dcdf78b9 renamed HousekeeperThread as MemoryTrimmingThread to avoid confusion with Housekeeper plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: 5182 diff changeset	504 memoryTrimmingThread_.join();
5181 65b05b44ae4c properly finalizing the housekeeper thread that periodically calls malloc_trim() Sebastien Jodogne <s.jodogne@gmail.com> parents: 5176 diff changeset	505 }
65b05b44ae4c properly finalizing the housekeeper thread that periodically calls malloc_trim() Sebastien Jodogne <s.jodogne@gmail.com> parents: 5176 diff changeset	506
4024 1d2b31fc782f new 'changes': JobSubmitted, JobSuccess, JobFailure Alain Mazy <alain@mazy.be> parents: 4022 diff changeset	507 jobsEngine_.GetRegistry().ResetObserver();
2815 925d8dc03a23 unserialization of jobs from plugins Sebastien Jodogne <s.jodogne@gmail.com> parents: 2808 diff changeset	508
925d8dc03a23 unserialization of jobs from plugins Sebastien Jodogne <s.jodogne@gmail.com> parents: 2808 diff changeset	509 if (isJobsEngineUnserialized_)
925d8dc03a23 unserialization of jobs from plugins Sebastien Jodogne <s.jodogne@gmail.com> parents: 2808 diff changeset	510 {
925d8dc03a23 unserialization of jobs from plugins Sebastien Jodogne <s.jodogne@gmail.com> parents: 2808 diff changeset	511 // Avoid losing jobs if the JobsRegistry cannot be unserialized
925d8dc03a23 unserialization of jobs from plugins Sebastien Jodogne <s.jodogne@gmail.com> parents: 2808 diff changeset	512 SaveJobsEngine();
925d8dc03a23 unserialization of jobs from plugins Sebastien Jodogne <s.jodogne@gmail.com> parents: 2808 diff changeset	513 }
2668 d26dd081df97 saving jobs engine on exit Sebastien Jodogne <s.jodogne@gmail.com> parents: 2665 diff changeset	514
1453 c0bdc47165ef code to warn about possible threading problems Sebastien Jodogne <s.jodogne@gmail.com> parents: 1447 diff changeset	515 // Do not change the order below!
2570 2e879c796ec7 JobsRegistry::SubmitAndWait(), StoreScuJob Sebastien Jodogne <s.jodogne@gmail.com> parents: 2507 diff changeset	516 jobsEngine_.Stop();
1453 c0bdc47165ef code to warn about possible threading problems Sebastien Jodogne <s.jodogne@gmail.com> parents: 1447 diff changeset	517 index_.Stop();
1436 0a3e3be59094 uncoupling of SignalChange for Lua scripts Sebastien Jodogne <s.jodogne@gmail.com> parents: 1434 diff changeset	518 }
0a3e3be59094 uncoupling of SignalChange for Lua scripts Sebastien Jodogne <s.jodogne@gmail.com> parents: 1434 diff changeset	519 }
0a3e3be59094 uncoupling of SignalChange for Lua scripts Sebastien Jodogne <s.jodogne@gmail.com> parents: 1434 diff changeset	520
0a3e3be59094 uncoupling of SignalChange for Lua scripts Sebastien Jodogne <s.jodogne@gmail.com> parents: 1434 diff changeset	521
236 6d9be2b470b4 compression Sebastien Jodogne <s.jodogne@gmail.com> parents: 233 diff changeset	522 void ServerContext::SetCompressionEnabled(bool enabled)
6d9be2b470b4 compression Sebastien Jodogne <s.jodogne@gmail.com> parents: 233 diff changeset	523 {
6d9be2b470b4 compression Sebastien Jodogne <s.jodogne@gmail.com> parents: 233 diff changeset	524 if (enabled)
6d9be2b470b4 compression Sebastien Jodogne <s.jodogne@gmail.com> parents: 233 diff changeset	525 LOG(WARNING) << "Disk compression is enabled";
6d9be2b470b4 compression Sebastien Jodogne <s.jodogne@gmail.com> parents: 233 diff changeset	526 else
6d9be2b470b4 compression Sebastien Jodogne <s.jodogne@gmail.com> parents: 233 diff changeset	527 LOG(WARNING) << "Disk compression is disabled";
6d9be2b470b4 compression Sebastien Jodogne <s.jodogne@gmail.com> parents: 233 diff changeset	528
6d9be2b470b4 compression Sebastien Jodogne <s.jodogne@gmail.com> parents: 233 diff changeset	529 compressionEnabled_ = enabled;
6d9be2b470b4 compression Sebastien Jodogne <s.jodogne@gmail.com> parents: 233 diff changeset	530 }
6d9be2b470b4 compression Sebastien Jodogne <s.jodogne@gmail.com> parents: 233 diff changeset	531
1549 e5e975e9b738 refactoring and simplification of StorageAccessor Sebastien Jodogne <s.jodogne@gmail.com> parents: 1548 diff changeset	532
1126 bf67431a7383 handling of file content type in IStorageArea Sebastien Jodogne <s.jodogne@gmail.com> parents: 1124 diff changeset	533 void ServerContext::RemoveFile(const std::string& fileUuid,
bf67431a7383 handling of file content type in IStorageArea Sebastien Jodogne <s.jodogne@gmail.com> parents: 1124 diff changeset	534 FileContentType type)
227 209ca3f6db62 dicom-scu from rest Sebastien Jodogne <s.jodogne@gmail.com> parents: 226 diff changeset	535 {
5184 dd085f7e7e71 cleaning new constructors of StorageAccessor Sebastien Jodogne <s.jodogne@gmail.com> parents: 5183 diff changeset	536 StorageAccessor accessor(area_, storageCache_, GetMetricsRegistry());
3175 574890d14c92 new metrics: orthanc_store_dicom_duration_ms, orthanc_storage_[create\|read\|remove]_duration_ms Sebastien Jodogne <s.jodogne@gmail.com> parents: 3174 diff changeset	537 accessor.Remove(fileUuid, type);
227 209ca3f6db62 dicom-scu from rest Sebastien Jodogne <s.jodogne@gmail.com> parents: 226 diff changeset	538 }
209ca3f6db62 dicom-scu from rest Sebastien Jodogne <s.jodogne@gmail.com> parents: 226 diff changeset	539
996 cf52f3bcb2b3 clarification of Lua classes wrt multithreading Sebastien Jodogne <s.jodogne@gmail.com> parents: 995 diff changeset	540
4796 94616af363ec added ReceivedCStoreInstanceFilter lua callback + OrthancPluginRegisterIncomingCStoreInstanceFilter in sdk Alain Mazy <am@osimis.io> parents: 4789 diff changeset	541 ServerContext::StoreResult ServerContext::StoreAfterTranscoding(std::string& resultPublicId,
94616af363ec added ReceivedCStoreInstanceFilter lua callback + OrthancPluginRegisterIncomingCStoreInstanceFilter in sdk Alain Mazy <am@osimis.io> parents: 4789 diff changeset	542 DicomInstanceToStore& dicom,
4988 8fba26292a9f Housekeeper plugin: finalizing + integration tests ok Alain Mazy <am@osimis.io> parents: 4984 diff changeset	543 StoreInstanceMode mode,
8fba26292a9f Housekeeper plugin: finalizing + integration tests ok Alain Mazy <am@osimis.io> parents: 4984 diff changeset	544 bool isReconstruct)
1004 a226e0959d8b DicomInstanceToStore Sebastien Jodogne <s.jodogne@gmail.com> parents: 1002 diff changeset	545 {
3814 023b2a9f3aa1 new enum: StoreInstanceMode Sebastien Jodogne <s.jodogne@gmail.com> parents: 3813 diff changeset	546 bool overwrite;
023b2a9f3aa1 new enum: StoreInstanceMode Sebastien Jodogne <s.jodogne@gmail.com> parents: 3813 diff changeset	547 switch (mode)
023b2a9f3aa1 new enum: StoreInstanceMode Sebastien Jodogne <s.jodogne@gmail.com> parents: 3813 diff changeset	548 {
023b2a9f3aa1 new enum: StoreInstanceMode Sebastien Jodogne <s.jodogne@gmail.com> parents: 3813 diff changeset	549 case StoreInstanceMode_Default:
023b2a9f3aa1 new enum: StoreInstanceMode Sebastien Jodogne <s.jodogne@gmail.com> parents: 3813 diff changeset	550 overwrite = overwriteInstances_;
023b2a9f3aa1 new enum: StoreInstanceMode Sebastien Jodogne <s.jodogne@gmail.com> parents: 3813 diff changeset	551 break;
023b2a9f3aa1 new enum: StoreInstanceMode Sebastien Jodogne <s.jodogne@gmail.com> parents: 3813 diff changeset	552
023b2a9f3aa1 new enum: StoreInstanceMode Sebastien Jodogne <s.jodogne@gmail.com> parents: 3813 diff changeset	553 case StoreInstanceMode_OverwriteDuplicate:
023b2a9f3aa1 new enum: StoreInstanceMode Sebastien Jodogne <s.jodogne@gmail.com> parents: 3813 diff changeset	554 overwrite = true;
023b2a9f3aa1 new enum: StoreInstanceMode Sebastien Jodogne <s.jodogne@gmail.com> parents: 3813 diff changeset	555 break;
023b2a9f3aa1 new enum: StoreInstanceMode Sebastien Jodogne <s.jodogne@gmail.com> parents: 3813 diff changeset	556
023b2a9f3aa1 new enum: StoreInstanceMode Sebastien Jodogne <s.jodogne@gmail.com> parents: 3813 diff changeset	557 case StoreInstanceMode_IgnoreDuplicate:
023b2a9f3aa1 new enum: StoreInstanceMode Sebastien Jodogne <s.jodogne@gmail.com> parents: 3813 diff changeset	558 overwrite = false;
023b2a9f3aa1 new enum: StoreInstanceMode Sebastien Jodogne <s.jodogne@gmail.com> parents: 3813 diff changeset	559 break;
023b2a9f3aa1 new enum: StoreInstanceMode Sebastien Jodogne <s.jodogne@gmail.com> parents: 3813 diff changeset	560
023b2a9f3aa1 new enum: StoreInstanceMode Sebastien Jodogne <s.jodogne@gmail.com> parents: 3813 diff changeset	561 default:
023b2a9f3aa1 new enum: StoreInstanceMode Sebastien Jodogne <s.jodogne@gmail.com> parents: 3813 diff changeset	562 throw OrthancException(ErrorCode_ParameterOutOfRange);
4499 6f99949b2878 reorganization Sebastien Jodogne <s.jodogne@gmail.com> parents: 4473 diff changeset	563 }
6f99949b2878 reorganization Sebastien Jodogne <s.jodogne@gmail.com> parents: 4473 diff changeset	564
6f99949b2878 reorganization Sebastien Jodogne <s.jodogne@gmail.com> parents: 4473 diff changeset	565 bool hasPixelDataOffset;
6f99949b2878 reorganization Sebastien Jodogne <s.jodogne@gmail.com> parents: 4473 diff changeset	566 uint64_t pixelDataOffset;
5316 03501a258d9e added instance metadata "PixelDataVR" Sebastien Jodogne <s.jodogne@gmail.com> parents: 5296 diff changeset	567 ValueRepresentation pixelDataVR;
4499 6f99949b2878 reorganization Sebastien Jodogne <s.jodogne@gmail.com> parents: 4473 diff changeset	568 hasPixelDataOffset = DicomStreamReader::LookupPixelDataOffset(
5316 03501a258d9e added instance metadata "PixelDataVR" Sebastien Jodogne <s.jodogne@gmail.com> parents: 5296 diff changeset	569 pixelDataOffset, pixelDataVR, dicom.GetBufferData(), dicom.GetBufferSize());
4506 ac69c9f76c71 refactoring ServerIndex::Store() Sebastien Jodogne <s.jodogne@gmail.com> parents: 4505 diff changeset	570
4507 b4c58795f3a8 widening the use of DicomTransferSyntax enum Sebastien Jodogne <s.jodogne@gmail.com> parents: 4506 diff changeset	571 DicomTransferSyntax transferSyntax;
4506 ac69c9f76c71 refactoring ServerIndex::Store() Sebastien Jodogne <s.jodogne@gmail.com> parents: 4505 diff changeset	572 bool hasTransferSyntax = dicom.LookupTransferSyntax(transferSyntax);
4507 b4c58795f3a8 widening the use of DicomTransferSyntax enum Sebastien Jodogne <s.jodogne@gmail.com> parents: 4506 diff changeset	573
4505 97d103b57cd1 removed cached dicom summary from DicomInstanceToStore Sebastien Jodogne <s.jodogne@gmail.com> parents: 4504 diff changeset	574 DicomMap summary;
5044 6fed78e13233 Refactored DicomMap to handle sequences when needed Alain Mazy <am@osimis.io> parents: 5043 diff changeset	575 dicom.GetSummary(summary); // -> from Orthanc 1.11.1, this includes the leaf nodes and sequences
5036 877bc3b96476 Handle Dicom sequences in ExtraMainDicomTags and save them in the 'MainDicomSequences' metadata Alain Mazy <am@osimis.io> parents: 4994 diff changeset	576
5176 6d8647122ef3 cont Sebastien Jodogne <s.jodogne@gmail.com> parents: 5160 diff changeset	577 std::set<DicomTag> allMainDicomTags;
6d8647122ef3 cont Sebastien Jodogne <s.jodogne@gmail.com> parents: 5160 diff changeset	578 DicomMap::GetAllMainDicomTags(allMainDicomTags);
4505 97d103b57cd1 removed cached dicom summary from DicomInstanceToStore Sebastien Jodogne <s.jodogne@gmail.com> parents: 4504 diff changeset	579
1004 a226e0959d8b DicomInstanceToStore Sebastien Jodogne <s.jodogne@gmail.com> parents: 1002 diff changeset	580 try
a226e0959d8b DicomInstanceToStore Sebastien Jodogne <s.jodogne@gmail.com> parents: 1002 diff changeset	581 {
3175 574890d14c92 new metrics: orthanc_store_dicom_duration_ms, orthanc_storage_[create\|read\|remove]_duration_ms Sebastien Jodogne <s.jodogne@gmail.com> parents: 3174 diff changeset	582 MetricsRegistry::Timer timer(GetMetricsRegistry(), "orthanc_store_dicom_duration_ms");
5184 dd085f7e7e71 cleaning new constructors of StorageAccessor Sebastien Jodogne <s.jodogne@gmail.com> parents: 5183 diff changeset	583 StorageAccessor accessor(area_, storageCache_, GetMetricsRegistry());
1549 e5e975e9b738 refactoring and simplification of StorageAccessor Sebastien Jodogne <s.jodogne@gmail.com> parents: 1548 diff changeset	584
4507 b4c58795f3a8 widening the use of DicomTransferSyntax enum Sebastien Jodogne <s.jodogne@gmail.com> parents: 4506 diff changeset	585 DicomInstanceHasher hasher(summary);
b4c58795f3a8 widening the use of DicomTransferSyntax enum Sebastien Jodogne <s.jodogne@gmail.com> parents: 4506 diff changeset	586 resultPublicId = hasher.HashInstance();
1004 a226e0959d8b DicomInstanceToStore Sebastien Jodogne <s.jodogne@gmail.com> parents: 1002 diff changeset	587
5044 6fed78e13233 Refactored DicomMap to handle sequences when needed Alain Mazy <am@osimis.io> parents: 5043 diff changeset	588 Json::Value dicomAsJson;
6fed78e13233 Refactored DicomMap to handle sequences when needed Alain Mazy <am@osimis.io> parents: 5043 diff changeset	589 dicom.GetDicomAsJson(dicomAsJson, allMainDicomTags); // don't crop any main dicom tags
5036 877bc3b96476 Handle Dicom sequences in ExtraMainDicomTags and save them in the 'MainDicomSequences' metadata Alain Mazy <am@osimis.io> parents: 4994 diff changeset	590
1574 0c29ebe80ac9 give access to full request origin in ReceivedInstanceFilter (Lua) Sebastien Jodogne <s.jodogne@gmail.com> parents: 1550 diff changeset	591 Json::Value simplifiedTags;
4504 7d1eabfac6e0 removed cached dicom-as-json from DicomInstanceToStore Sebastien Jodogne <s.jodogne@gmail.com> parents: 4500 diff changeset	592 Toolbox::SimplifyDicomAsJson(simplifiedTags, dicomAsJson, DicomToJsonFormat_Human);
1004 a226e0959d8b DicomInstanceToStore Sebastien Jodogne <s.jodogne@gmail.com> parents: 1002 diff changeset	593
a226e0959d8b DicomInstanceToStore Sebastien Jodogne <s.jodogne@gmail.com> parents: 1002 diff changeset	594 // Test if the instance must be filtered out
4796 94616af363ec added ReceivedCStoreInstanceFilter lua callback + OrthancPluginRegisterIncomingCStoreInstanceFilter in sdk Alain Mazy <am@osimis.io> parents: 4789 diff changeset	595 StoreResult result;
1433 461e7554bff7 refactoring: LuaScripting Sebastien Jodogne <s.jodogne@gmail.com> parents: 1427 diff changeset	596
4988 8fba26292a9f Housekeeper plugin: finalizing + integration tests ok Alain Mazy <am@osimis.io> parents: 4984 diff changeset	597 if (!isReconstruct) // skip all filters if this is a reconstruction
1433 461e7554bff7 refactoring: LuaScripting Sebastien Jodogne <s.jodogne@gmail.com> parents: 1427 diff changeset	598 {
3947 cf6eb4fc6841 fix issue 179: use a shared mutex to avoid deadlock in python plugins Alain Mazy <alain@mazy.be> parents: 3945 diff changeset	599 boost::shared_lock<boost::shared_mutex> lock(listenersMutex_);
1453 c0bdc47165ef code to warn about possible threading problems Sebastien Jodogne <s.jodogne@gmail.com> parents: 1447 diff changeset	600
c0bdc47165ef code to warn about possible threading problems Sebastien Jodogne <s.jodogne@gmail.com> parents: 1447 diff changeset	601 for (ServerListeners::iterator it = listeners_.begin(); it != listeners_.end(); ++it)
1433 461e7554bff7 refactoring: LuaScripting Sebastien Jodogne <s.jodogne@gmail.com> parents: 1427 diff changeset	602 {
1453 c0bdc47165ef code to warn about possible threading problems Sebastien Jodogne <s.jodogne@gmail.com> parents: 1447 diff changeset	603 try
1433 461e7554bff7 refactoring: LuaScripting Sebastien Jodogne <s.jodogne@gmail.com> parents: 1427 diff changeset	604 {
1574 0c29ebe80ac9 give access to full request origin in ReceivedInstanceFilter (Lua) Sebastien Jodogne <s.jodogne@gmail.com> parents: 1550 diff changeset	605 if (!it->GetListener().FilterIncomingInstance(dicom, simplifiedTags))
1453 c0bdc47165ef code to warn about possible threading problems Sebastien Jodogne <s.jodogne@gmail.com> parents: 1447 diff changeset	606 {
4796 94616af363ec added ReceivedCStoreInstanceFilter lua callback + OrthancPluginRegisterIncomingCStoreInstanceFilter in sdk Alain Mazy <am@osimis.io> parents: 4789 diff changeset	607 result.SetStatus(StoreStatus_FilteredOut);
94616af363ec added ReceivedCStoreInstanceFilter lua callback + OrthancPluginRegisterIncomingCStoreInstanceFilter in sdk Alain Mazy <am@osimis.io> parents: 4789 diff changeset	608 result.SetCStoreStatusCode(STATUS_Success); // to keep backward compatibility, we still return 'success'
1453 c0bdc47165ef code to warn about possible threading problems Sebastien Jodogne <s.jodogne@gmail.com> parents: 1447 diff changeset	609 break;
c0bdc47165ef code to warn about possible threading problems Sebastien Jodogne <s.jodogne@gmail.com> parents: 1447 diff changeset	610 }
4796 94616af363ec added ReceivedCStoreInstanceFilter lua callback + OrthancPluginRegisterIncomingCStoreInstanceFilter in sdk Alain Mazy <am@osimis.io> parents: 4789 diff changeset	611
94616af363ec added ReceivedCStoreInstanceFilter lua callback + OrthancPluginRegisterIncomingCStoreInstanceFilter in sdk Alain Mazy <am@osimis.io> parents: 4789 diff changeset	612 if (dicom.GetOrigin().GetRequestOrigin() == Orthanc::RequestOrigin_DicomProtocol)
94616af363ec added ReceivedCStoreInstanceFilter lua callback + OrthancPluginRegisterIncomingCStoreInstanceFilter in sdk Alain Mazy <am@osimis.io> parents: 4789 diff changeset	613 {
4921 309fb4f02704 fix signature of OrthancPluginIncomingCStoreInstanceFilter Sebastien Jodogne <s.jodogne@gmail.com> parents: 4919 diff changeset	614 uint16_t filterResult = STATUS_Success;
309fb4f02704 fix signature of OrthancPluginIncomingCStoreInstanceFilter Sebastien Jodogne <s.jodogne@gmail.com> parents: 4919 diff changeset	615 if (!it->GetListener().FilterIncomingCStoreInstance(filterResult, dicom, simplifiedTags))
4796 94616af363ec added ReceivedCStoreInstanceFilter lua callback + OrthancPluginRegisterIncomingCStoreInstanceFilter in sdk Alain Mazy <am@osimis.io> parents: 4789 diff changeset	616 {
4921 309fb4f02704 fix signature of OrthancPluginIncomingCStoreInstanceFilter Sebastien Jodogne <s.jodogne@gmail.com> parents: 4919 diff changeset	617 // The instance is to be discarded
4796 94616af363ec added ReceivedCStoreInstanceFilter lua callback + OrthancPluginRegisterIncomingCStoreInstanceFilter in sdk Alain Mazy <am@osimis.io> parents: 4789 diff changeset	618 result.SetStatus(StoreStatus_FilteredOut);
94616af363ec added ReceivedCStoreInstanceFilter lua callback + OrthancPluginRegisterIncomingCStoreInstanceFilter in sdk Alain Mazy <am@osimis.io> parents: 4789 diff changeset	619 result.SetCStoreStatusCode(filterResult);
94616af363ec added ReceivedCStoreInstanceFilter lua callback + OrthancPluginRegisterIncomingCStoreInstanceFilter in sdk Alain Mazy <am@osimis.io> parents: 4789 diff changeset	620 break;
94616af363ec added ReceivedCStoreInstanceFilter lua callback + OrthancPluginRegisterIncomingCStoreInstanceFilter in sdk Alain Mazy <am@osimis.io> parents: 4789 diff changeset	621 }
94616af363ec added ReceivedCStoreInstanceFilter lua callback + OrthancPluginRegisterIncomingCStoreInstanceFilter in sdk Alain Mazy <am@osimis.io> parents: 4789 diff changeset	622 }
94616af363ec added ReceivedCStoreInstanceFilter lua callback + OrthancPluginRegisterIncomingCStoreInstanceFilter in sdk Alain Mazy <am@osimis.io> parents: 4789 diff changeset	623
1433 461e7554bff7 refactoring: LuaScripting Sebastien Jodogne <s.jodogne@gmail.com> parents: 1427 diff changeset	624 }
1453 c0bdc47165ef code to warn about possible threading problems Sebastien Jodogne <s.jodogne@gmail.com> parents: 1447 diff changeset	625 catch (OrthancException& e)
c0bdc47165ef code to warn about possible threading problems Sebastien Jodogne <s.jodogne@gmail.com> parents: 1447 diff changeset	626 {
c0bdc47165ef code to warn about possible threading problems Sebastien Jodogne <s.jodogne@gmail.com> parents: 1447 diff changeset	627 LOG(ERROR) << "Error in the " << it->GetDescription()
2135 cadfe0a2a393 fix in the sample basic plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: 2134 diff changeset	628 << " callback while receiving an instance: " << e.What()
cadfe0a2a393 fix in the sample basic plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: 2134 diff changeset	629 << " (code " << e.GetErrorCode() << ")";
1453 c0bdc47165ef code to warn about possible threading problems Sebastien Jodogne <s.jodogne@gmail.com> parents: 1447 diff changeset	630 throw;
c0bdc47165ef code to warn about possible threading problems Sebastien Jodogne <s.jodogne@gmail.com> parents: 1447 diff changeset	631 }
1433 461e7554bff7 refactoring: LuaScripting Sebastien Jodogne <s.jodogne@gmail.com> parents: 1427 diff changeset	632 }
461e7554bff7 refactoring: LuaScripting Sebastien Jodogne <s.jodogne@gmail.com> parents: 1427 diff changeset	633 }
461e7554bff7 refactoring: LuaScripting Sebastien Jodogne <s.jodogne@gmail.com> parents: 1427 diff changeset	634
4796 94616af363ec added ReceivedCStoreInstanceFilter lua callback + OrthancPluginRegisterIncomingCStoreInstanceFilter in sdk Alain Mazy <am@osimis.io> parents: 4789 diff changeset	635 if (result.GetStatus() == StoreStatus_FilteredOut)
1004 a226e0959d8b DicomInstanceToStore Sebastien Jodogne <s.jodogne@gmail.com> parents: 1002 diff changeset	636 {
a226e0959d8b DicomInstanceToStore Sebastien Jodogne <s.jodogne@gmail.com> parents: 1002 diff changeset	637 LOG(INFO) << "An incoming instance has been discarded by the filter";
4796 94616af363ec added ReceivedCStoreInstanceFilter lua callback + OrthancPluginRegisterIncomingCStoreInstanceFilter in sdk Alain Mazy <am@osimis.io> parents: 4789 diff changeset	638 return result;
1004 a226e0959d8b DicomInstanceToStore Sebastien Jodogne <s.jodogne@gmail.com> parents: 1002 diff changeset	639 }
a226e0959d8b DicomInstanceToStore Sebastien Jodogne <s.jodogne@gmail.com> parents: 1002 diff changeset	640
4457 789676a8c96a Refactoring and improvements to the cache of DICOM files in ServerContext Sebastien Jodogne <s.jodogne@gmail.com> parents: 4437 diff changeset	641 // Remove the file from the DicomCache (useful if
789676a8c96a Refactoring and improvements to the cache of DICOM files in ServerContext Sebastien Jodogne <s.jodogne@gmail.com> parents: 4437 diff changeset	642 // "OverwriteInstances" is set to "true")
789676a8c96a Refactoring and improvements to the cache of DICOM files in ServerContext Sebastien Jodogne <s.jodogne@gmail.com> parents: 4437 diff changeset	643 dicomCache_.Invalidate(resultPublicId);
789676a8c96a Refactoring and improvements to the cache of DICOM files in ServerContext Sebastien Jodogne <s.jodogne@gmail.com> parents: 4437 diff changeset	644 PublishDicomCacheMetrics();
2825 8aa6aef11b70 New configuration option "OverwriteInstances" to choose how duplicate SOPInstanceUID are handled Sebastien Jodogne <s.jodogne@gmail.com> parents: 2815 diff changeset	645
1549 e5e975e9b738 refactoring and simplification of StorageAccessor Sebastien Jodogne <s.jodogne@gmail.com> parents: 1548 diff changeset	646 // TODO Should we use "gzip" instead?
e5e975e9b738 refactoring and simplification of StorageAccessor Sebastien Jodogne <s.jodogne@gmail.com> parents: 1548 diff changeset	647 CompressionType compression = (compressionEnabled_ ? CompressionType_ZlibWithSize : CompressionType_None);
1004 a226e0959d8b DicomInstanceToStore Sebastien Jodogne <s.jodogne@gmail.com> parents: 1002 diff changeset	648
1549 e5e975e9b738 refactoring and simplification of StorageAccessor Sebastien Jodogne <s.jodogne@gmail.com> parents: 1548 diff changeset	649 FileInfo dicomInfo = accessor.Write(dicom.GetBufferData(), dicom.GetBufferSize(),
e5e975e9b738 refactoring and simplification of StorageAccessor Sebastien Jodogne <s.jodogne@gmail.com> parents: 1548 diff changeset	650 FileContentType_Dicom, compression, storeMD5_);
1004 a226e0959d8b DicomInstanceToStore Sebastien Jodogne <s.jodogne@gmail.com> parents: 1002 diff changeset	651
a226e0959d8b DicomInstanceToStore Sebastien Jodogne <s.jodogne@gmail.com> parents: 1002 diff changeset	652 ServerIndex::Attachments attachments;
a226e0959d8b DicomInstanceToStore Sebastien Jodogne <s.jodogne@gmail.com> parents: 1002 diff changeset	653 attachments.push_back(dicomInfo);
4500 3b4940bca158 added safeguards in Orthanc::FileInfo Sebastien Jodogne <s.jodogne@gmail.com> parents: 4499 diff changeset	654
4514 5b929e6b3c36 removal of "dicom-as-json" attachments Sebastien Jodogne <s.jodogne@gmail.com> parents: 4513 diff changeset	655 FileInfo dicomUntilPixelData;
5b929e6b3c36 removal of "dicom-as-json" attachments Sebastien Jodogne <s.jodogne@gmail.com> parents: 4513 diff changeset	656 if (hasPixelDataOffset &&
5b929e6b3c36 removal of "dicom-as-json" attachments Sebastien Jodogne <s.jodogne@gmail.com> parents: 4513 diff changeset	657 (!area_.HasReadRange() \|\|
4519 a3c6678aa7b1 cppcheck Sebastien Jodogne <s.jodogne@gmail.com> parents: 4514 diff changeset	658 compressionEnabled_))
4500 3b4940bca158 added safeguards in Orthanc::FileInfo Sebastien Jodogne <s.jodogne@gmail.com> parents: 4499 diff changeset	659 {
4514 5b929e6b3c36 removal of "dicom-as-json" attachments Sebastien Jodogne <s.jodogne@gmail.com> parents: 4513 diff changeset	660 dicomUntilPixelData = accessor.Write(dicom.GetBufferData(), pixelDataOffset,
5b929e6b3c36 removal of "dicom-as-json" attachments Sebastien Jodogne <s.jodogne@gmail.com> parents: 4513 diff changeset	661 FileContentType_DicomUntilPixelData, compression, storeMD5_);
5b929e6b3c36 removal of "dicom-as-json" attachments Sebastien Jodogne <s.jodogne@gmail.com> parents: 4513 diff changeset	662 attachments.push_back(dicomUntilPixelData);
4500 3b4940bca158 added safeguards in Orthanc::FileInfo Sebastien Jodogne <s.jodogne@gmail.com> parents: 4499 diff changeset	663 }
1004 a226e0959d8b DicomInstanceToStore Sebastien Jodogne <s.jodogne@gmail.com> parents: 1002 diff changeset	664
1067 ace99e272203 access metadata in plugins Sebastien Jodogne <s.jodogne@gmail.com> parents: 1066 diff changeset	665 typedef std::map<MetadataType, std::string> InstanceMetadata;
ace99e272203 access metadata in plugins Sebastien Jodogne <s.jodogne@gmail.com> parents: 1066 diff changeset	666 InstanceMetadata instanceMetadata;
4796 94616af363ec added ReceivedCStoreInstanceFilter lua callback + OrthancPluginRegisterIncomingCStoreInstanceFilter in sdk Alain Mazy <am@osimis.io> parents: 4789 diff changeset	667 result.SetStatus(index_.Store(
5044 6fed78e13233 Refactored DicomMap to handle sequences when needed Alain Mazy <am@osimis.io> parents: 5043 diff changeset	668 instanceMetadata, summary, attachments, dicom.GetMetadata(), dicom.GetOrigin(), overwrite,
5316 03501a258d9e added instance metadata "PixelDataVR" Sebastien Jodogne <s.jodogne@gmail.com> parents: 5296 diff changeset	669 hasTransferSyntax, transferSyntax, hasPixelDataOffset, pixelDataOffset, pixelDataVR, isReconstruct));
1004 a226e0959d8b DicomInstanceToStore Sebastien Jodogne <s.jodogne@gmail.com> parents: 1002 diff changeset	670
1433 461e7554bff7 refactoring: LuaScripting Sebastien Jodogne <s.jodogne@gmail.com> parents: 1427 diff changeset	671 // Only keep the metadata for the "instance" level
4506 ac69c9f76c71 refactoring ServerIndex::Store() Sebastien Jodogne <s.jodogne@gmail.com> parents: 4505 diff changeset	672 dicom.ClearMetadata();
1067 ace99e272203 access metadata in plugins Sebastien Jodogne <s.jodogne@gmail.com> parents: 1066 diff changeset	673
ace99e272203 access metadata in plugins Sebastien Jodogne <s.jodogne@gmail.com> parents: 1066 diff changeset	674 for (InstanceMetadata::const_iterator it = instanceMetadata.begin();
1304 7b6925b0890d cppcheck Sebastien Jodogne <s.jodogne@gmail.com> parents: 1288 diff changeset	675 it != instanceMetadata.end(); ++it)
1067 ace99e272203 access metadata in plugins Sebastien Jodogne <s.jodogne@gmail.com> parents: 1066 diff changeset	676 {
4506 ac69c9f76c71 refactoring ServerIndex::Store() Sebastien Jodogne <s.jodogne@gmail.com> parents: 4505 diff changeset	677 dicom.AddMetadata(ResourceType_Instance, it->first, it->second);
1067 ace99e272203 access metadata in plugins Sebastien Jodogne <s.jodogne@gmail.com> parents: 1066 diff changeset	678 }
ace99e272203 access metadata in plugins Sebastien Jodogne <s.jodogne@gmail.com> parents: 1066 diff changeset	679
4796 94616af363ec added ReceivedCStoreInstanceFilter lua callback + OrthancPluginRegisterIncomingCStoreInstanceFilter in sdk Alain Mazy <am@osimis.io> parents: 4789 diff changeset	680 if (result.GetStatus() != StoreStatus_Success)
1004 a226e0959d8b DicomInstanceToStore Sebastien Jodogne <s.jodogne@gmail.com> parents: 1002 diff changeset	681 {
1549 e5e975e9b738 refactoring and simplification of StorageAccessor Sebastien Jodogne <s.jodogne@gmail.com> parents: 1548 diff changeset	682 accessor.Remove(dicomInfo);
4500 3b4940bca158 added safeguards in Orthanc::FileInfo Sebastien Jodogne <s.jodogne@gmail.com> parents: 4499 diff changeset	683
4514 5b929e6b3c36 removal of "dicom-as-json" attachments Sebastien Jodogne <s.jodogne@gmail.com> parents: 4513 diff changeset	684 if (dicomUntilPixelData.IsValid())
4500 3b4940bca158 added safeguards in Orthanc::FileInfo Sebastien Jodogne <s.jodogne@gmail.com> parents: 4499 diff changeset	685 {
4514 5b929e6b3c36 removal of "dicom-as-json" attachments Sebastien Jodogne <s.jodogne@gmail.com> parents: 4513 diff changeset	686 accessor.Remove(dicomUntilPixelData);
4500 3b4940bca158 added safeguards in Orthanc::FileInfo Sebastien Jodogne <s.jodogne@gmail.com> parents: 4499 diff changeset	687 }
1004 a226e0959d8b DicomInstanceToStore Sebastien Jodogne <s.jodogne@gmail.com> parents: 1002 diff changeset	688 }
a226e0959d8b DicomInstanceToStore Sebastien Jodogne <s.jodogne@gmail.com> parents: 1002 diff changeset	689
4994 2f30aa99c2db cppcheck Alain Mazy <am@osimis.io> parents: 4988 diff changeset	690 if (!isReconstruct)
1004 a226e0959d8b DicomInstanceToStore Sebastien Jodogne <s.jodogne@gmail.com> parents: 1002 diff changeset	691 {
4994 2f30aa99c2db cppcheck Alain Mazy <am@osimis.io> parents: 4988 diff changeset	692 // skip logs in case of reconstruction
4988 8fba26292a9f Housekeeper plugin: finalizing + integration tests ok Alain Mazy <am@osimis.io> parents: 4984 diff changeset	693 switch (result.GetStatus())
8fba26292a9f Housekeeper plugin: finalizing + integration tests ok Alain Mazy <am@osimis.io> parents: 4984 diff changeset	694 {
8fba26292a9f Housekeeper plugin: finalizing + integration tests ok Alain Mazy <am@osimis.io> parents: 4984 diff changeset	695 case StoreStatus_Success:
8fba26292a9f Housekeeper plugin: finalizing + integration tests ok Alain Mazy <am@osimis.io> parents: 4984 diff changeset	696 LOG(INFO) << "New instance stored";
8fba26292a9f Housekeeper plugin: finalizing + integration tests ok Alain Mazy <am@osimis.io> parents: 4984 diff changeset	697 break;
1004 a226e0959d8b DicomInstanceToStore Sebastien Jodogne <s.jodogne@gmail.com> parents: 1002 diff changeset	698
4988 8fba26292a9f Housekeeper plugin: finalizing + integration tests ok Alain Mazy <am@osimis.io> parents: 4984 diff changeset	699 case StoreStatus_AlreadyStored:
8fba26292a9f Housekeeper plugin: finalizing + integration tests ok Alain Mazy <am@osimis.io> parents: 4984 diff changeset	700 LOG(INFO) << "Already stored";
8fba26292a9f Housekeeper plugin: finalizing + integration tests ok Alain Mazy <am@osimis.io> parents: 4984 diff changeset	701 break;
1004 a226e0959d8b DicomInstanceToStore Sebastien Jodogne <s.jodogne@gmail.com> parents: 1002 diff changeset	702
4988 8fba26292a9f Housekeeper plugin: finalizing + integration tests ok Alain Mazy <am@osimis.io> parents: 4984 diff changeset	703 case StoreStatus_Failure:
5296 5053a10da5a2 Fix orphan files remaining in storage when working with MaximumStorageSize Alain Mazy <am@osimis.io> parents: 5248 diff changeset	704 LOG(ERROR) << "Unknown store failure";
5053a10da5a2 Fix orphan files remaining in storage when working with MaximumStorageSize Alain Mazy <am@osimis.io> parents: 5248 diff changeset	705 throw OrthancException(ErrorCode_InternalError, HttpStatus_500_InternalServerError);
5053a10da5a2 Fix orphan files remaining in storage when working with MaximumStorageSize Alain Mazy <am@osimis.io> parents: 5248 diff changeset	706
5053a10da5a2 Fix orphan files remaining in storage when working with MaximumStorageSize Alain Mazy <am@osimis.io> parents: 5248 diff changeset	707 case StoreStatus_StorageFull:
5053a10da5a2 Fix orphan files remaining in storage when working with MaximumStorageSize Alain Mazy <am@osimis.io> parents: 5248 diff changeset	708 LOG(ERROR) << "Storage full";
5053a10da5a2 Fix orphan files remaining in storage when working with MaximumStorageSize Alain Mazy <am@osimis.io> parents: 5248 diff changeset	709 throw OrthancException(ErrorCode_FullStorage, HttpStatus_507_InsufficientStorage);
1004 a226e0959d8b DicomInstanceToStore Sebastien Jodogne <s.jodogne@gmail.com> parents: 1002 diff changeset	710
4988 8fba26292a9f Housekeeper plugin: finalizing + integration tests ok Alain Mazy <am@osimis.io> parents: 4984 diff changeset	711 default:
8fba26292a9f Housekeeper plugin: finalizing + integration tests ok Alain Mazy <am@osimis.io> parents: 4984 diff changeset	712 // This should never happen
8fba26292a9f Housekeeper plugin: finalizing + integration tests ok Alain Mazy <am@osimis.io> parents: 4984 diff changeset	713 break;
8fba26292a9f Housekeeper plugin: finalizing + integration tests ok Alain Mazy <am@osimis.io> parents: 4984 diff changeset	714 }
1004 a226e0959d8b DicomInstanceToStore Sebastien Jodogne <s.jodogne@gmail.com> parents: 1002 diff changeset	715
4994 2f30aa99c2db cppcheck Alain Mazy <am@osimis.io> parents: 4988 diff changeset	716 // skip all signals if this is a reconstruction
4988 8fba26292a9f Housekeeper plugin: finalizing + integration tests ok Alain Mazy <am@osimis.io> parents: 4984 diff changeset	717 if (result.GetStatus() == StoreStatus_Success \|\|
8fba26292a9f Housekeeper plugin: finalizing + integration tests ok Alain Mazy <am@osimis.io> parents: 4984 diff changeset	718 result.GetStatus() == StoreStatus_AlreadyStored)
1066 bb82e5e818e9 OnStoredInstance callback in plugins Sebastien Jodogne <s.jodogne@gmail.com> parents: 1065 diff changeset	719 {
4988 8fba26292a9f Housekeeper plugin: finalizing + integration tests ok Alain Mazy <am@osimis.io> parents: 4984 diff changeset	720 boost::shared_lock<boost::shared_mutex> lock(listenersMutex_);
8fba26292a9f Housekeeper plugin: finalizing + integration tests ok Alain Mazy <am@osimis.io> parents: 4984 diff changeset	721
8fba26292a9f Housekeeper plugin: finalizing + integration tests ok Alain Mazy <am@osimis.io> parents: 4984 diff changeset	722 for (ServerListeners::iterator it = listeners_.begin(); it != listeners_.end(); ++it)
1066 bb82e5e818e9 OnStoredInstance callback in plugins Sebastien Jodogne <s.jodogne@gmail.com> parents: 1065 diff changeset	723 {
4988 8fba26292a9f Housekeeper plugin: finalizing + integration tests ok Alain Mazy <am@osimis.io> parents: 4984 diff changeset	724 try
8fba26292a9f Housekeeper plugin: finalizing + integration tests ok Alain Mazy <am@osimis.io> parents: 4984 diff changeset	725 {
8fba26292a9f Housekeeper plugin: finalizing + integration tests ok Alain Mazy <am@osimis.io> parents: 4984 diff changeset	726 it->GetListener().SignalStoredInstance(resultPublicId, dicom, simplifiedTags);
8fba26292a9f Housekeeper plugin: finalizing + integration tests ok Alain Mazy <am@osimis.io> parents: 4984 diff changeset	727 }
8fba26292a9f Housekeeper plugin: finalizing + integration tests ok Alain Mazy <am@osimis.io> parents: 4984 diff changeset	728 catch (OrthancException& e)
8fba26292a9f Housekeeper plugin: finalizing + integration tests ok Alain Mazy <am@osimis.io> parents: 4984 diff changeset	729 {
8fba26292a9f Housekeeper plugin: finalizing + integration tests ok Alain Mazy <am@osimis.io> parents: 4984 diff changeset	730 LOG(ERROR) << "Error in the " << it->GetDescription()
8fba26292a9f Housekeeper plugin: finalizing + integration tests ok Alain Mazy <am@osimis.io> parents: 4984 diff changeset	731 << " callback while receiving an instance: " << e.What()
8fba26292a9f Housekeeper plugin: finalizing + integration tests ok Alain Mazy <am@osimis.io> parents: 4984 diff changeset	732 << " (code " << e.GetErrorCode() << ")";
8fba26292a9f Housekeeper plugin: finalizing + integration tests ok Alain Mazy <am@osimis.io> parents: 4984 diff changeset	733 }
1066 bb82e5e818e9 OnStoredInstance callback in plugins Sebastien Jodogne <s.jodogne@gmail.com> parents: 1065 diff changeset	734 }
bb82e5e818e9 OnStoredInstance callback in plugins Sebastien Jodogne <s.jodogne@gmail.com> parents: 1065 diff changeset	735 }
1004 a226e0959d8b DicomInstanceToStore Sebastien Jodogne <s.jodogne@gmail.com> parents: 1002 diff changeset	736 }
a226e0959d8b DicomInstanceToStore Sebastien Jodogne <s.jodogne@gmail.com> parents: 1002 diff changeset	737
4796 94616af363ec added ReceivedCStoreInstanceFilter lua callback + OrthancPluginRegisterIncomingCStoreInstanceFilter in sdk Alain Mazy <am@osimis.io> parents: 4789 diff changeset	738 return result;
1004 a226e0959d8b DicomInstanceToStore Sebastien Jodogne <s.jodogne@gmail.com> parents: 1002 diff changeset	739 }
a226e0959d8b DicomInstanceToStore Sebastien Jodogne <s.jodogne@gmail.com> parents: 1002 diff changeset	740 catch (OrthancException& e)
a226e0959d8b DicomInstanceToStore Sebastien Jodogne <s.jodogne@gmail.com> parents: 1002 diff changeset	741 {
a226e0959d8b DicomInstanceToStore Sebastien Jodogne <s.jodogne@gmail.com> parents: 1002 diff changeset	742 if (e.GetErrorCode() == ErrorCode_InexistentTag)
a226e0959d8b DicomInstanceToStore Sebastien Jodogne <s.jodogne@gmail.com> parents: 1002 diff changeset	743 {
4505 97d103b57cd1 removed cached dicom summary from DicomInstanceToStore Sebastien Jodogne <s.jodogne@gmail.com> parents: 4504 diff changeset	744 summary.LogMissingTagsForStore();
1004 a226e0959d8b DicomInstanceToStore Sebastien Jodogne <s.jodogne@gmail.com> parents: 1002 diff changeset	745 }
4505 97d103b57cd1 removed cached dicom summary from DicomInstanceToStore Sebastien Jodogne <s.jodogne@gmail.com> parents: 4504 diff changeset	746
1004 a226e0959d8b DicomInstanceToStore Sebastien Jodogne <s.jodogne@gmail.com> parents: 1002 diff changeset	747 throw;
a226e0959d8b DicomInstanceToStore Sebastien Jodogne <s.jodogne@gmail.com> parents: 1002 diff changeset	748 }
a226e0959d8b DicomInstanceToStore Sebastien Jodogne <s.jodogne@gmail.com> parents: 1002 diff changeset	749 }
a226e0959d8b DicomInstanceToStore Sebastien Jodogne <s.jodogne@gmail.com> parents: 1002 diff changeset	750
a226e0959d8b DicomInstanceToStore Sebastien Jodogne <s.jodogne@gmail.com> parents: 1002 diff changeset	751
4796 94616af363ec added ReceivedCStoreInstanceFilter lua callback + OrthancPluginRegisterIncomingCStoreInstanceFilter in sdk Alain Mazy <am@osimis.io> parents: 4789 diff changeset	752 ServerContext::StoreResult ServerContext::Store(std::string& resultPublicId,
4845 02d77189d8ba added ReceivedInstanceCallback + sample C++ plugin Alain Mazy <am@osimis.io> parents: 4831 diff changeset	753 DicomInstanceToStore& receivedDicom,
4796 94616af363ec added ReceivedCStoreInstanceFilter lua callback + OrthancPluginRegisterIncomingCStoreInstanceFilter in sdk Alain Mazy <am@osimis.io> parents: 4789 diff changeset	754 StoreInstanceMode mode)
4845 02d77189d8ba added ReceivedInstanceCallback + sample C++ plugin Alain Mazy <am@osimis.io> parents: 4831 diff changeset	755 {
02d77189d8ba added ReceivedInstanceCallback + sample C++ plugin Alain Mazy <am@osimis.io> parents: 4831 diff changeset	756 DicomInstanceToStore* dicom = &receivedDicom;
4913 c1b19f95e166 fix signature of OrthancPluginReceivedInstanceCallback for ABI compatibility Sebastien Jodogne <s.jodogne@gmail.com> parents: 4900 diff changeset	757
c1b19f95e166 fix signature of OrthancPluginReceivedInstanceCallback for ABI compatibility Sebastien Jodogne <s.jodogne@gmail.com> parents: 4900 diff changeset	758 // WARNING: The scope of "modifiedBuffer" and "modifiedDicom" must
c1b19f95e166 fix signature of OrthancPluginReceivedInstanceCallback for ABI compatibility Sebastien Jodogne <s.jodogne@gmail.com> parents: 4900 diff changeset	759 // be the same as that of "dicom"
c1b19f95e166 fix signature of OrthancPluginReceivedInstanceCallback for ABI compatibility Sebastien Jodogne <s.jodogne@gmail.com> parents: 4900 diff changeset	760 MallocMemoryBuffer modifiedBuffer;
4845 02d77189d8ba added ReceivedInstanceCallback + sample C++ plugin Alain Mazy <am@osimis.io> parents: 4831 diff changeset	761 std::unique_ptr<DicomInstanceToStore> modifiedDicom;
02d77189d8ba added ReceivedInstanceCallback + sample C++ plugin Alain Mazy <am@osimis.io> parents: 4831 diff changeset	762
02d77189d8ba added ReceivedInstanceCallback + sample C++ plugin Alain Mazy <am@osimis.io> parents: 4831 diff changeset	763 #if ORTHANC_ENABLE_PLUGINS == 1
02d77189d8ba added ReceivedInstanceCallback + sample C++ plugin Alain Mazy <am@osimis.io> parents: 4831 diff changeset	764 if (HasPlugins())
02d77189d8ba added ReceivedInstanceCallback + sample C++ plugin Alain Mazy <am@osimis.io> parents: 4831 diff changeset	765 {
4913 c1b19f95e166 fix signature of OrthancPluginReceivedInstanceCallback for ABI compatibility Sebastien Jodogne <s.jodogne@gmail.com> parents: 4900 diff changeset	766 // New in Orthanc 1.10.0
4845 02d77189d8ba added ReceivedInstanceCallback + sample C++ plugin Alain Mazy <am@osimis.io> parents: 4831 diff changeset	767
4919 676e03e69703 added origin in OrthancPluginReceivedInstanceCallback Sebastien Jodogne <s.jodogne@gmail.com> parents: 4913 diff changeset	768 OrthancPluginReceivedInstanceAction action = GetPlugins().ApplyReceivedInstanceCallbacks(
676e03e69703 added origin in OrthancPluginReceivedInstanceCallback Sebastien Jodogne <s.jodogne@gmail.com> parents: 4913 diff changeset	769 modifiedBuffer, receivedDicom.GetBufferData(), receivedDicom.GetBufferSize(), receivedDicom.GetOrigin().GetRequestOrigin());
4845 02d77189d8ba added ReceivedInstanceCallback + sample C++ plugin Alain Mazy <am@osimis.io> parents: 4831 diff changeset	770
4913 c1b19f95e166 fix signature of OrthancPluginReceivedInstanceCallback for ABI compatibility Sebastien Jodogne <s.jodogne@gmail.com> parents: 4900 diff changeset	771 switch (action)
4845 02d77189d8ba added ReceivedInstanceCallback + sample C++ plugin Alain Mazy <am@osimis.io> parents: 4831 diff changeset	772 {
4919 676e03e69703 added origin in OrthancPluginReceivedInstanceCallback Sebastien Jodogne <s.jodogne@gmail.com> parents: 4913 diff changeset	773 case OrthancPluginReceivedInstanceAction_Discard:
4913 c1b19f95e166 fix signature of OrthancPluginReceivedInstanceCallback for ABI compatibility Sebastien Jodogne <s.jodogne@gmail.com> parents: 4900 diff changeset	774 {
c1b19f95e166 fix signature of OrthancPluginReceivedInstanceCallback for ABI compatibility Sebastien Jodogne <s.jodogne@gmail.com> parents: 4900 diff changeset	775 CLOG(INFO, PLUGINS) << "A plugin has discarded the instance in its ReceivedInstanceCallback";
c1b19f95e166 fix signature of OrthancPluginReceivedInstanceCallback for ABI compatibility Sebastien Jodogne <s.jodogne@gmail.com> parents: 4900 diff changeset	776 StoreResult result;
c1b19f95e166 fix signature of OrthancPluginReceivedInstanceCallback for ABI compatibility Sebastien Jodogne <s.jodogne@gmail.com> parents: 4900 diff changeset	777 result.SetStatus(StoreStatus_FilteredOut);
c1b19f95e166 fix signature of OrthancPluginReceivedInstanceCallback for ABI compatibility Sebastien Jodogne <s.jodogne@gmail.com> parents: 4900 diff changeset	778 return result;
c1b19f95e166 fix signature of OrthancPluginReceivedInstanceCallback for ABI compatibility Sebastien Jodogne <s.jodogne@gmail.com> parents: 4900 diff changeset	779 }
c1b19f95e166 fix signature of OrthancPluginReceivedInstanceCallback for ABI compatibility Sebastien Jodogne <s.jodogne@gmail.com> parents: 4900 diff changeset	780
4919 676e03e69703 added origin in OrthancPluginReceivedInstanceCallback Sebastien Jodogne <s.jodogne@gmail.com> parents: 4913 diff changeset	781 case OrthancPluginReceivedInstanceAction_KeepAsIs:
676e03e69703 added origin in OrthancPluginReceivedInstanceCallback Sebastien Jodogne <s.jodogne@gmail.com> parents: 4913 diff changeset	782 // This path is also used when no ReceivedInstanceCallback is installed by the plugins
4913 c1b19f95e166 fix signature of OrthancPluginReceivedInstanceCallback for ABI compatibility Sebastien Jodogne <s.jodogne@gmail.com> parents: 4900 diff changeset	783 break;
4845 02d77189d8ba added ReceivedInstanceCallback + sample C++ plugin Alain Mazy <am@osimis.io> parents: 4831 diff changeset	784
4919 676e03e69703 added origin in OrthancPluginReceivedInstanceCallback Sebastien Jodogne <s.jodogne@gmail.com> parents: 4913 diff changeset	785 case OrthancPluginReceivedInstanceAction_Modify:
4913 c1b19f95e166 fix signature of OrthancPluginReceivedInstanceCallback for ABI compatibility Sebastien Jodogne <s.jodogne@gmail.com> parents: 4900 diff changeset	786 if (modifiedBuffer.GetSize() > 0 &&
c1b19f95e166 fix signature of OrthancPluginReceivedInstanceCallback for ABI compatibility Sebastien Jodogne <s.jodogne@gmail.com> parents: 4900 diff changeset	787 modifiedBuffer.GetData() != NULL)
c1b19f95e166 fix signature of OrthancPluginReceivedInstanceCallback for ABI compatibility Sebastien Jodogne <s.jodogne@gmail.com> parents: 4900 diff changeset	788 {
c1b19f95e166 fix signature of OrthancPluginReceivedInstanceCallback for ABI compatibility Sebastien Jodogne <s.jodogne@gmail.com> parents: 4900 diff changeset	789 CLOG(INFO, PLUGINS) << "A plugin has modified the instance in its ReceivedInstanceCallback";
c1b19f95e166 fix signature of OrthancPluginReceivedInstanceCallback for ABI compatibility Sebastien Jodogne <s.jodogne@gmail.com> parents: 4900 diff changeset	790 modifiedDicom.reset(DicomInstanceToStore::CreateFromBuffer(modifiedBuffer.GetData(), modifiedBuffer.GetSize()));
4919 676e03e69703 added origin in OrthancPluginReceivedInstanceCallback Sebastien Jodogne <s.jodogne@gmail.com> parents: 4913 diff changeset	791 modifiedDicom->SetOrigin(receivedDicom.GetOrigin());
4913 c1b19f95e166 fix signature of OrthancPluginReceivedInstanceCallback for ABI compatibility Sebastien Jodogne <s.jodogne@gmail.com> parents: 4900 diff changeset	792 dicom = modifiedDicom.get();
c1b19f95e166 fix signature of OrthancPluginReceivedInstanceCallback for ABI compatibility Sebastien Jodogne <s.jodogne@gmail.com> parents: 4900 diff changeset	793 }
c1b19f95e166 fix signature of OrthancPluginReceivedInstanceCallback for ABI compatibility Sebastien Jodogne <s.jodogne@gmail.com> parents: 4900 diff changeset	794 else
c1b19f95e166 fix signature of OrthancPluginReceivedInstanceCallback for ABI compatibility Sebastien Jodogne <s.jodogne@gmail.com> parents: 4900 diff changeset	795 {
c1b19f95e166 fix signature of OrthancPluginReceivedInstanceCallback for ABI compatibility Sebastien Jodogne <s.jodogne@gmail.com> parents: 4900 diff changeset	796 throw OrthancException(ErrorCode_Plugin, "The ReceivedInstanceCallback plugin is not returning a modified buffer while it has modified the instance");
c1b19f95e166 fix signature of OrthancPluginReceivedInstanceCallback for ABI compatibility Sebastien Jodogne <s.jodogne@gmail.com> parents: 4900 diff changeset	797 }
c1b19f95e166 fix signature of OrthancPluginReceivedInstanceCallback for ABI compatibility Sebastien Jodogne <s.jodogne@gmail.com> parents: 4900 diff changeset	798 break;
c1b19f95e166 fix signature of OrthancPluginReceivedInstanceCallback for ABI compatibility Sebastien Jodogne <s.jodogne@gmail.com> parents: 4900 diff changeset	799
c1b19f95e166 fix signature of OrthancPluginReceivedInstanceCallback for ABI compatibility Sebastien Jodogne <s.jodogne@gmail.com> parents: 4900 diff changeset	800 default:
c1b19f95e166 fix signature of OrthancPluginReceivedInstanceCallback for ABI compatibility Sebastien Jodogne <s.jodogne@gmail.com> parents: 4900 diff changeset	801 throw OrthancException(ErrorCode_Plugin, "The ReceivedInstanceCallback has returned an invalid value");
4845 02d77189d8ba added ReceivedInstanceCallback + sample C++ plugin Alain Mazy <am@osimis.io> parents: 4831 diff changeset	802 }
02d77189d8ba added ReceivedInstanceCallback + sample C++ plugin Alain Mazy <am@osimis.io> parents: 4831 diff changeset	803 }
02d77189d8ba added ReceivedInstanceCallback + sample C++ plugin Alain Mazy <am@osimis.io> parents: 4831 diff changeset	804 #endif
02d77189d8ba added ReceivedInstanceCallback + sample C++ plugin Alain Mazy <am@osimis.io> parents: 4831 diff changeset	805
4988 8fba26292a9f Housekeeper plugin: finalizing + integration tests ok Alain Mazy <am@osimis.io> parents: 4984 diff changeset	806 return TranscodeAndStore(resultPublicId, dicom, mode);
8fba26292a9f Housekeeper plugin: finalizing + integration tests ok Alain Mazy <am@osimis.io> parents: 4984 diff changeset	807 }
8fba26292a9f Housekeeper plugin: finalizing + integration tests ok Alain Mazy <am@osimis.io> parents: 4984 diff changeset	808
8fba26292a9f Housekeeper plugin: finalizing + integration tests ok Alain Mazy <am@osimis.io> parents: 4984 diff changeset	809 ServerContext::StoreResult ServerContext::TranscodeAndStore(std::string& resultPublicId,
8fba26292a9f Housekeeper plugin: finalizing + integration tests ok Alain Mazy <am@osimis.io> parents: 4984 diff changeset	810 DicomInstanceToStore* dicom,
8fba26292a9f Housekeeper plugin: finalizing + integration tests ok Alain Mazy <am@osimis.io> parents: 4984 diff changeset	811 StoreInstanceMode mode,
8fba26292a9f Housekeeper plugin: finalizing + integration tests ok Alain Mazy <am@osimis.io> parents: 4984 diff changeset	812 bool isReconstruct)
8fba26292a9f Housekeeper plugin: finalizing + integration tests ok Alain Mazy <am@osimis.io> parents: 4984 diff changeset	813 {
8fba26292a9f Housekeeper plugin: finalizing + integration tests ok Alain Mazy <am@osimis.io> parents: 4984 diff changeset	814
5148 2df546a76e17 If specifying 'Transcode' option to /modify or /anonymize, this value will take over the 'IngestTranscoding' global configuration Alain Mazy <am@osimis.io> parents: 5147 diff changeset	815 if (!isIngestTranscoding_ \|\| dicom->SkipIngestTranscoding())
3912 7610af1532c3 prototyping automated transcoding of incoming DICOM files Sebastien Jodogne <s.jodogne@gmail.com> parents: 3911 diff changeset	816 {
3941 771dbd9eb3bd class CleaningInstancesJob to share cleaning code by merge/split jobs Sebastien Jodogne <s.jodogne@gmail.com> parents: 3939 diff changeset	817 // No automated transcoding. This was the only path in Orthanc <= 1.6.1.
4988 8fba26292a9f Housekeeper plugin: finalizing + integration tests ok Alain Mazy <am@osimis.io> parents: 4984 diff changeset	818 return StoreAfterTranscoding(resultPublicId, *dicom, mode, isReconstruct);
3912 7610af1532c3 prototyping automated transcoding of incoming DICOM files Sebastien Jodogne <s.jodogne@gmail.com> parents: 3911 diff changeset	819 }
7610af1532c3 prototyping automated transcoding of incoming DICOM files Sebastien Jodogne <s.jodogne@gmail.com> parents: 3911 diff changeset	820 else
7610af1532c3 prototyping automated transcoding of incoming DICOM files Sebastien Jodogne <s.jodogne@gmail.com> parents: 3911 diff changeset	821 {
4384 7e0d015ad109 new configuration options IngestTranscodingOfUncompressed and IngestTranscodingOfCompressed Sebastien Jodogne <s.jodogne@gmail.com> parents: 4376 diff changeset	822 // Automated transcoding of incoming DICOM instance
7e0d015ad109 new configuration options IngestTranscodingOfUncompressed and IngestTranscodingOfCompressed Sebastien Jodogne <s.jodogne@gmail.com> parents: 4376 diff changeset	823
7e0d015ad109 new configuration options IngestTranscodingOfUncompressed and IngestTranscodingOfCompressed Sebastien Jodogne <s.jodogne@gmail.com> parents: 4376 diff changeset	824 bool transcode = false;
3945 0b3256c3ee14 simplified IDicomTranscoder Sebastien Jodogne <s.jodogne@gmail.com> parents: 3944 diff changeset	825
3912 7610af1532c3 prototyping automated transcoding of incoming DICOM files Sebastien Jodogne <s.jodogne@gmail.com> parents: 3911 diff changeset	826 DicomTransferSyntax sourceSyntax;
4845 02d77189d8ba added ReceivedInstanceCallback + sample C++ plugin Alain Mazy <am@osimis.io> parents: 4831 diff changeset	827 if (!dicom->LookupTransferSyntax(sourceSyntax) \|\|
3939 c205f670098e new configuration options: BuiltinDecoderTranscoderOrder and IngestTranscoding Sebastien Jodogne <s.jodogne@gmail.com> parents: 3938 diff changeset	828 sourceSyntax == ingestTransferSyntax_)
3912 7610af1532c3 prototyping automated transcoding of incoming DICOM files Sebastien Jodogne <s.jodogne@gmail.com> parents: 3911 diff changeset	829 {
4384 7e0d015ad109 new configuration options IngestTranscodingOfUncompressed and IngestTranscodingOfCompressed Sebastien Jodogne <s.jodogne@gmail.com> parents: 4376 diff changeset	830 // Don't transcode if the incoming DICOM is already in the proper transfer syntax
7e0d015ad109 new configuration options IngestTranscodingOfUncompressed and IngestTranscodingOfCompressed Sebastien Jodogne <s.jodogne@gmail.com> parents: 4376 diff changeset	831 transcode = false;
7e0d015ad109 new configuration options IngestTranscodingOfUncompressed and IngestTranscodingOfCompressed Sebastien Jodogne <s.jodogne@gmail.com> parents: 4376 diff changeset	832 }
7e0d015ad109 new configuration options IngestTranscodingOfUncompressed and IngestTranscodingOfCompressed Sebastien Jodogne <s.jodogne@gmail.com> parents: 4376 diff changeset	833 else if (!IsTranscodableTransferSyntax(sourceSyntax))
7e0d015ad109 new configuration options IngestTranscodingOfUncompressed and IngestTranscodingOfCompressed Sebastien Jodogne <s.jodogne@gmail.com> parents: 4376 diff changeset	834 {
7e0d015ad109 new configuration options IngestTranscodingOfUncompressed and IngestTranscodingOfCompressed Sebastien Jodogne <s.jodogne@gmail.com> parents: 4376 diff changeset	835 // Don't try to transcode video files, this is useless (new in
7e0d015ad109 new configuration options IngestTranscodingOfUncompressed and IngestTranscodingOfCompressed Sebastien Jodogne <s.jodogne@gmail.com> parents: 4376 diff changeset	836 // Orthanc 1.8.2). This could be accepted in the future if
7e0d015ad109 new configuration options IngestTranscodingOfUncompressed and IngestTranscodingOfCompressed Sebastien Jodogne <s.jodogne@gmail.com> parents: 4376 diff changeset	837 // video transcoding gets implemented.
7e0d015ad109 new configuration options IngestTranscodingOfUncompressed and IngestTranscodingOfCompressed Sebastien Jodogne <s.jodogne@gmail.com> parents: 4376 diff changeset	838 transcode = false;
7e0d015ad109 new configuration options IngestTranscodingOfUncompressed and IngestTranscodingOfCompressed Sebastien Jodogne <s.jodogne@gmail.com> parents: 4376 diff changeset	839 }
7e0d015ad109 new configuration options IngestTranscodingOfUncompressed and IngestTranscodingOfCompressed Sebastien Jodogne <s.jodogne@gmail.com> parents: 4376 diff changeset	840 else if (IsUncompressedTransferSyntax(sourceSyntax))
7e0d015ad109 new configuration options IngestTranscodingOfUncompressed and IngestTranscodingOfCompressed Sebastien Jodogne <s.jodogne@gmail.com> parents: 4376 diff changeset	841 {
7e0d015ad109 new configuration options IngestTranscodingOfUncompressed and IngestTranscodingOfCompressed Sebastien Jodogne <s.jodogne@gmail.com> parents: 4376 diff changeset	842 // This is an uncompressed transfer syntax (new in Orthanc 1.8.2)
7e0d015ad109 new configuration options IngestTranscodingOfUncompressed and IngestTranscodingOfCompressed Sebastien Jodogne <s.jodogne@gmail.com> parents: 4376 diff changeset	843 transcode = ingestTranscodingOfUncompressed_;
7e0d015ad109 new configuration options IngestTranscodingOfUncompressed and IngestTranscodingOfCompressed Sebastien Jodogne <s.jodogne@gmail.com> parents: 4376 diff changeset	844 }
7e0d015ad109 new configuration options IngestTranscodingOfUncompressed and IngestTranscodingOfCompressed Sebastien Jodogne <s.jodogne@gmail.com> parents: 4376 diff changeset	845 else
7e0d015ad109 new configuration options IngestTranscodingOfUncompressed and IngestTranscodingOfCompressed Sebastien Jodogne <s.jodogne@gmail.com> parents: 4376 diff changeset	846 {
7e0d015ad109 new configuration options IngestTranscodingOfUncompressed and IngestTranscodingOfCompressed Sebastien Jodogne <s.jodogne@gmail.com> parents: 4376 diff changeset	847 // This is an compressed transfer syntax (new in Orthanc 1.8.2)
7e0d015ad109 new configuration options IngestTranscodingOfUncompressed and IngestTranscodingOfCompressed Sebastien Jodogne <s.jodogne@gmail.com> parents: 4376 diff changeset	848 transcode = ingestTranscodingOfCompressed_;
7e0d015ad109 new configuration options IngestTranscodingOfUncompressed and IngestTranscodingOfCompressed Sebastien Jodogne <s.jodogne@gmail.com> parents: 4376 diff changeset	849 }
7e0d015ad109 new configuration options IngestTranscodingOfUncompressed and IngestTranscodingOfCompressed Sebastien Jodogne <s.jodogne@gmail.com> parents: 4376 diff changeset	850
7e0d015ad109 new configuration options IngestTranscodingOfUncompressed and IngestTranscodingOfCompressed Sebastien Jodogne <s.jodogne@gmail.com> parents: 4376 diff changeset	851 if (!transcode)
7e0d015ad109 new configuration options IngestTranscodingOfUncompressed and IngestTranscodingOfCompressed Sebastien Jodogne <s.jodogne@gmail.com> parents: 4376 diff changeset	852 {
3912 7610af1532c3 prototyping automated transcoding of incoming DICOM files Sebastien Jodogne <s.jodogne@gmail.com> parents: 3911 diff changeset	853 // No transcoding
4988 8fba26292a9f Housekeeper plugin: finalizing + integration tests ok Alain Mazy <am@osimis.io> parents: 4984 diff changeset	854 return StoreAfterTranscoding(resultPublicId, *dicom, mode, isReconstruct);
3912 7610af1532c3 prototyping automated transcoding of incoming DICOM files Sebastien Jodogne <s.jodogne@gmail.com> parents: 3911 diff changeset	855 }
7610af1532c3 prototyping automated transcoding of incoming DICOM files Sebastien Jodogne <s.jodogne@gmail.com> parents: 3911 diff changeset	856 else
4384 7e0d015ad109 new configuration options IngestTranscodingOfUncompressed and IngestTranscodingOfCompressed Sebastien Jodogne <s.jodogne@gmail.com> parents: 4376 diff changeset	857 {
7e0d015ad109 new configuration options IngestTranscodingOfUncompressed and IngestTranscodingOfCompressed Sebastien Jodogne <s.jodogne@gmail.com> parents: 4376 diff changeset	858 // Trancoding
3912 7610af1532c3 prototyping automated transcoding of incoming DICOM files Sebastien Jodogne <s.jodogne@gmail.com> parents: 3911 diff changeset	859 std::set<DicomTransferSyntax> syntaxes;
3939 c205f670098e new configuration options: BuiltinDecoderTranscoderOrder and IngestTranscoding Sebastien Jodogne <s.jodogne@gmail.com> parents: 3938 diff changeset	860 syntaxes.insert(ingestTransferSyntax_);
4384 7e0d015ad109 new configuration options IngestTranscodingOfUncompressed and IngestTranscodingOfCompressed Sebastien Jodogne <s.jodogne@gmail.com> parents: 4376 diff changeset	861
3945 0b3256c3ee14 simplified IDicomTranscoder Sebastien Jodogne <s.jodogne@gmail.com> parents: 3944 diff changeset	862 IDicomTranscoder::DicomImage source;
4845 02d77189d8ba added ReceivedInstanceCallback + sample C++ plugin Alain Mazy <am@osimis.io> parents: 4831 diff changeset	863 source.SetExternalBuffer(dicom->GetBufferData(), dicom->GetBufferSize());
4384 7e0d015ad109 new configuration options IngestTranscodingOfUncompressed and IngestTranscodingOfCompressed Sebastien Jodogne <s.jodogne@gmail.com> parents: 4376 diff changeset	864
3945 0b3256c3ee14 simplified IDicomTranscoder Sebastien Jodogne <s.jodogne@gmail.com> parents: 3944 diff changeset	865 IDicomTranscoder::DicomImage transcoded;
3951 5fe8c6d3212e removed useless information "hasSopInstanceUidChanged" Sebastien Jodogne <s.jodogne@gmail.com> parents: 3947 diff changeset	866 if (Transcode(transcoded, source, syntaxes, true /* allow new SOP instance UID */))
3912 7610af1532c3 prototyping automated transcoding of incoming DICOM files Sebastien Jodogne <s.jodogne@gmail.com> parents: 3911 diff changeset	867 {
3945 0b3256c3ee14 simplified IDicomTranscoder Sebastien Jodogne <s.jodogne@gmail.com> parents: 3944 diff changeset	868 std::unique_ptr<ParsedDicomFile> tmp(transcoded.ReleaseAsParsedDicomFile());
0b3256c3ee14 simplified IDicomTranscoder Sebastien Jodogne <s.jodogne@gmail.com> parents: 3944 diff changeset	869
4508 8f9090b137f1 Optimization in C-STORE SCP by avoiding an unnecessary DICOM parsing Sebastien Jodogne <s.jodogne@gmail.com> parents: 4507 diff changeset	870 std::unique_ptr<DicomInstanceToStore> toStore(DicomInstanceToStore::CreateFromParsedDicomFile(*tmp));
4845 02d77189d8ba added ReceivedInstanceCallback + sample C++ plugin Alain Mazy <am@osimis.io> parents: 4831 diff changeset	871 toStore->SetOrigin(dicom->GetOrigin());
5147 19ccae2e0371 Fix issue #212 (Anonymization process transcodes data and loses resource link) Alain Mazy <am@osimis.io> parents: 5111 diff changeset	872 toStore->CopyMetadata(dicom->GetMetadata());
4988 8fba26292a9f Housekeeper plugin: finalizing + integration tests ok Alain Mazy <am@osimis.io> parents: 4984 diff changeset	873
8fba26292a9f Housekeeper plugin: finalizing + integration tests ok Alain Mazy <am@osimis.io> parents: 4984 diff changeset	874 StoreResult result = StoreAfterTranscoding(resultPublicId, *toStore, mode, isReconstruct);
3938 54dbebbcc032 fix Sebastien Jodogne <s.jodogne@gmail.com> parents: 3931 diff changeset	875 assert(resultPublicId == tmp->GetHasher().HashInstance());
54dbebbcc032 fix Sebastien Jodogne <s.jodogne@gmail.com> parents: 3931 diff changeset	876
4796 94616af363ec added ReceivedCStoreInstanceFilter lua callback + OrthancPluginRegisterIncomingCStoreInstanceFilter in sdk Alain Mazy <am@osimis.io> parents: 4789 diff changeset	877 return result;
3912 7610af1532c3 prototyping automated transcoding of incoming DICOM files Sebastien Jodogne <s.jodogne@gmail.com> parents: 3911 diff changeset	878 }
3945 0b3256c3ee14 simplified IDicomTranscoder Sebastien Jodogne <s.jodogne@gmail.com> parents: 3944 diff changeset	879 else
0b3256c3ee14 simplified IDicomTranscoder Sebastien Jodogne <s.jodogne@gmail.com> parents: 3944 diff changeset	880 {
0b3256c3ee14 simplified IDicomTranscoder Sebastien Jodogne <s.jodogne@gmail.com> parents: 3944 diff changeset	881 // Cannot transcode => store the original file
4988 8fba26292a9f Housekeeper plugin: finalizing + integration tests ok Alain Mazy <am@osimis.io> parents: 4984 diff changeset	882 return StoreAfterTranscoding(resultPublicId, *dicom, mode, isReconstruct);
3945 0b3256c3ee14 simplified IDicomTranscoder Sebastien Jodogne <s.jodogne@gmail.com> parents: 3944 diff changeset	883 }
3912 7610af1532c3 prototyping automated transcoding of incoming DICOM files Sebastien Jodogne <s.jodogne@gmail.com> parents: 3911 diff changeset	884 }
7610af1532c3 prototyping automated transcoding of incoming DICOM files Sebastien Jodogne <s.jodogne@gmail.com> parents: 3911 diff changeset	885 }
7610af1532c3 prototyping automated transcoding of incoming DICOM files Sebastien Jodogne <s.jodogne@gmail.com> parents: 3911 diff changeset	886 }
7610af1532c3 prototyping automated transcoding of incoming DICOM files Sebastien Jodogne <s.jodogne@gmail.com> parents: 3911 diff changeset	887
7610af1532c3 prototyping automated transcoding of incoming DICOM files Sebastien Jodogne <s.jodogne@gmail.com> parents: 3911 diff changeset	888
1146 200fcac0deb4 optimization for access to attachments Sebastien Jodogne <s.jodogne@gmail.com> parents: 1145 diff changeset	889 void ServerContext::AnswerAttachment(RestApiOutput& output,
1700 f5ddbd9239dd New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed" Sebastien Jodogne <s.jodogne@gmail.com> parents: 1632 diff changeset	890 const std::string& resourceId,
1146 200fcac0deb4 optimization for access to attachments Sebastien Jodogne <s.jodogne@gmail.com> parents: 1145 diff changeset	891 FileContentType content)
226 8a26a8e85edf refactoring to read files Sebastien Jodogne <s.jodogne@gmail.com> parents: 224 diff changeset	892 {
232 5368bbe813cf refactoring of attachments Sebastien Jodogne <s.jodogne@gmail.com> parents: 227 diff changeset	893 FileInfo attachment;
4627 f7d5372b59b3 handling revisions of attachments Sebastien Jodogne <s.jodogne@gmail.com> parents: 4623 diff changeset	894 int64_t revision;
f7d5372b59b3 handling revisions of attachments Sebastien Jodogne <s.jodogne@gmail.com> parents: 4623 diff changeset	895 if (!index_.LookupAttachment(attachment, revision, resourceId, content))
232 5368bbe813cf refactoring of attachments Sebastien Jodogne <s.jodogne@gmail.com> parents: 227 diff changeset	896 {
1700 f5ddbd9239dd New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed" Sebastien Jodogne <s.jodogne@gmail.com> parents: 1632 diff changeset	897 throw OrthancException(ErrorCode_UnknownResource);
236 6d9be2b470b4 compression Sebastien Jodogne <s.jodogne@gmail.com> parents: 233 diff changeset	898 }
4627 f7d5372b59b3 handling revisions of attachments Sebastien Jodogne <s.jodogne@gmail.com> parents: 4623 diff changeset	899 else
f7d5372b59b3 handling revisions of attachments Sebastien Jodogne <s.jodogne@gmail.com> parents: 4623 diff changeset	900 {
5184 dd085f7e7e71 cleaning new constructors of StorageAccessor Sebastien Jodogne <s.jodogne@gmail.com> parents: 5183 diff changeset	901 StorageAccessor accessor(area_, storageCache_, GetMetricsRegistry());
4627 f7d5372b59b3 handling revisions of attachments Sebastien Jodogne <s.jodogne@gmail.com> parents: 4623 diff changeset	902 accessor.AnswerFile(output, attachment, GetFileContentMime(content));
f7d5372b59b3 handling revisions of attachments Sebastien Jodogne <s.jodogne@gmail.com> parents: 4623 diff changeset	903 }
226 8a26a8e85edf refactoring to read files Sebastien Jodogne <s.jodogne@gmail.com> parents: 224 diff changeset	904 }
8a26a8e85edf refactoring to read files Sebastien Jodogne <s.jodogne@gmail.com> parents: 224 diff changeset	905
8a26a8e85edf refactoring to read files Sebastien Jodogne <s.jodogne@gmail.com> parents: 224 diff changeset	906
1700 f5ddbd9239dd New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed" Sebastien Jodogne <s.jodogne@gmail.com> parents: 1632 diff changeset	907 void ServerContext::ChangeAttachmentCompression(const std::string& resourceId,
f5ddbd9239dd New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed" Sebastien Jodogne <s.jodogne@gmail.com> parents: 1632 diff changeset	908 FileContentType attachmentType,
f5ddbd9239dd New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed" Sebastien Jodogne <s.jodogne@gmail.com> parents: 1632 diff changeset	909 CompressionType compression)
f5ddbd9239dd New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed" Sebastien Jodogne <s.jodogne@gmail.com> parents: 1632 diff changeset	910 {
f5ddbd9239dd New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed" Sebastien Jodogne <s.jodogne@gmail.com> parents: 1632 diff changeset	911 LOG(INFO) << "Changing compression type for attachment "
f5ddbd9239dd New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed" Sebastien Jodogne <s.jodogne@gmail.com> parents: 1632 diff changeset	912 << EnumerationToString(attachmentType)
f5ddbd9239dd New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed" Sebastien Jodogne <s.jodogne@gmail.com> parents: 1632 diff changeset	913 << " of resource " << resourceId << " to "
f5ddbd9239dd New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed" Sebastien Jodogne <s.jodogne@gmail.com> parents: 1632 diff changeset	914 << compression;
f5ddbd9239dd New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed" Sebastien Jodogne <s.jodogne@gmail.com> parents: 1632 diff changeset	915
f5ddbd9239dd New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed" Sebastien Jodogne <s.jodogne@gmail.com> parents: 1632 diff changeset	916 FileInfo attachment;
4627 f7d5372b59b3 handling revisions of attachments Sebastien Jodogne <s.jodogne@gmail.com> parents: 4623 diff changeset	917 int64_t revision;
f7d5372b59b3 handling revisions of attachments Sebastien Jodogne <s.jodogne@gmail.com> parents: 4623 diff changeset	918 if (!index_.LookupAttachment(attachment, revision, resourceId, attachmentType))
1700 f5ddbd9239dd New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed" Sebastien Jodogne <s.jodogne@gmail.com> parents: 1632 diff changeset	919 {
f5ddbd9239dd New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed" Sebastien Jodogne <s.jodogne@gmail.com> parents: 1632 diff changeset	920 throw OrthancException(ErrorCode_UnknownResource);
f5ddbd9239dd New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed" Sebastien Jodogne <s.jodogne@gmail.com> parents: 1632 diff changeset	921 }
f5ddbd9239dd New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed" Sebastien Jodogne <s.jodogne@gmail.com> parents: 1632 diff changeset	922
f5ddbd9239dd New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed" Sebastien Jodogne <s.jodogne@gmail.com> parents: 1632 diff changeset	923 if (attachment.GetCompressionType() == compression)
f5ddbd9239dd New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed" Sebastien Jodogne <s.jodogne@gmail.com> parents: 1632 diff changeset	924 {
f5ddbd9239dd New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed" Sebastien Jodogne <s.jodogne@gmail.com> parents: 1632 diff changeset	925 // Nothing to do
f5ddbd9239dd New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed" Sebastien Jodogne <s.jodogne@gmail.com> parents: 1632 diff changeset	926 return;
f5ddbd9239dd New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed" Sebastien Jodogne <s.jodogne@gmail.com> parents: 1632 diff changeset	927 }
f5ddbd9239dd New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed" Sebastien Jodogne <s.jodogne@gmail.com> parents: 1632 diff changeset	928
f5ddbd9239dd New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed" Sebastien Jodogne <s.jodogne@gmail.com> parents: 1632 diff changeset	929 std::string content;
f5ddbd9239dd New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed" Sebastien Jodogne <s.jodogne@gmail.com> parents: 1632 diff changeset	930
5184 dd085f7e7e71 cleaning new constructors of StorageAccessor Sebastien Jodogne <s.jodogne@gmail.com> parents: 5183 diff changeset	931 StorageAccessor accessor(area_, storageCache_, GetMetricsRegistry());
1700 f5ddbd9239dd New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed" Sebastien Jodogne <s.jodogne@gmail.com> parents: 1632 diff changeset	932 accessor.Read(content, attachment);
f5ddbd9239dd New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed" Sebastien Jodogne <s.jodogne@gmail.com> parents: 1632 diff changeset	933
f5ddbd9239dd New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed" Sebastien Jodogne <s.jodogne@gmail.com> parents: 1632 diff changeset	934 FileInfo modified = accessor.Write(content.empty() ? NULL : content.c_str(),
f5ddbd9239dd New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed" Sebastien Jodogne <s.jodogne@gmail.com> parents: 1632 diff changeset	935 content.size(), attachmentType, compression, storeMD5_);
f5ddbd9239dd New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed" Sebastien Jodogne <s.jodogne@gmail.com> parents: 1632 diff changeset	936
f5ddbd9239dd New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed" Sebastien Jodogne <s.jodogne@gmail.com> parents: 1632 diff changeset	937 try
f5ddbd9239dd New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed" Sebastien Jodogne <s.jodogne@gmail.com> parents: 1632 diff changeset	938 {
4627 f7d5372b59b3 handling revisions of attachments Sebastien Jodogne <s.jodogne@gmail.com> parents: 4623 diff changeset	939 int64_t newRevision; // ignored
4640 66109d24d26e "ETag" headers for metadata and attachments now allow strong comparison (MD5 is included) Sebastien Jodogne <s.jodogne@gmail.com> parents: 4629 diff changeset	940 StoreStatus status = index_.AddAttachment(newRevision, modified, resourceId,
66109d24d26e "ETag" headers for metadata and attachments now allow strong comparison (MD5 is included) Sebastien Jodogne <s.jodogne@gmail.com> parents: 4629 diff changeset	941 true, revision, modified.GetUncompressedMD5());
1700 f5ddbd9239dd New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed" Sebastien Jodogne <s.jodogne@gmail.com> parents: 1632 diff changeset	942 if (status != StoreStatus_Success)
f5ddbd9239dd New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed" Sebastien Jodogne <s.jodogne@gmail.com> parents: 1632 diff changeset	943 {
f5ddbd9239dd New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed" Sebastien Jodogne <s.jodogne@gmail.com> parents: 1632 diff changeset	944 accessor.Remove(modified);
f5ddbd9239dd New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed" Sebastien Jodogne <s.jodogne@gmail.com> parents: 1632 diff changeset	945 throw OrthancException(ErrorCode_Database);
f5ddbd9239dd New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed" Sebastien Jodogne <s.jodogne@gmail.com> parents: 1632 diff changeset	946 }
f5ddbd9239dd New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed" Sebastien Jodogne <s.jodogne@gmail.com> parents: 1632 diff changeset	947 }
f5ddbd9239dd New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed" Sebastien Jodogne <s.jodogne@gmail.com> parents: 1632 diff changeset	948 catch (OrthancException&)
f5ddbd9239dd New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed" Sebastien Jodogne <s.jodogne@gmail.com> parents: 1632 diff changeset	949 {
f5ddbd9239dd New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed" Sebastien Jodogne <s.jodogne@gmail.com> parents: 1632 diff changeset	950 accessor.Remove(modified);
f5ddbd9239dd New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed" Sebastien Jodogne <s.jodogne@gmail.com> parents: 1632 diff changeset	951 throw;
f5ddbd9239dd New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed" Sebastien Jodogne <s.jodogne@gmail.com> parents: 1632 diff changeset	952 }
f5ddbd9239dd New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed" Sebastien Jodogne <s.jodogne@gmail.com> parents: 1632 diff changeset	953 }
f5ddbd9239dd New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed" Sebastien Jodogne <s.jodogne@gmail.com> parents: 1632 diff changeset	954
f5ddbd9239dd New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed" Sebastien Jodogne <s.jodogne@gmail.com> parents: 1632 diff changeset	955
4514 5b929e6b3c36 removal of "dicom-as-json" attachments Sebastien Jodogne <s.jodogne@gmail.com> parents: 4513 diff changeset	956 static void InjectEmptyPixelData(Json::Value& dicomAsJson)
5b929e6b3c36 removal of "dicom-as-json" attachments Sebastien Jodogne <s.jodogne@gmail.com> parents: 4513 diff changeset	957 {
5b929e6b3c36 removal of "dicom-as-json" attachments Sebastien Jodogne <s.jodogne@gmail.com> parents: 4513 diff changeset	958 // This is for backward compatibility with Orthanc <= 1.9.0
5b929e6b3c36 removal of "dicom-as-json" attachments Sebastien Jodogne <s.jodogne@gmail.com> parents: 4513 diff changeset	959 Json::Value pixelData = Json::objectValue;
5b929e6b3c36 removal of "dicom-as-json" attachments Sebastien Jodogne <s.jodogne@gmail.com> parents: 4513 diff changeset	960 pixelData["Name"] = "PixelData";
5b929e6b3c36 removal of "dicom-as-json" attachments Sebastien Jodogne <s.jodogne@gmail.com> parents: 4513 diff changeset	961 pixelData["Type"] = "Null";
5b929e6b3c36 removal of "dicom-as-json" attachments Sebastien Jodogne <s.jodogne@gmail.com> parents: 4513 diff changeset	962 pixelData["Value"] = Json::nullValue;
5b929e6b3c36 removal of "dicom-as-json" attachments Sebastien Jodogne <s.jodogne@gmail.com> parents: 4513 diff changeset	963
5b929e6b3c36 removal of "dicom-as-json" attachments Sebastien Jodogne <s.jodogne@gmail.com> parents: 4513 diff changeset	964 dicomAsJson["7fe0,0010"] = pixelData;
5b929e6b3c36 removal of "dicom-as-json" attachments Sebastien Jodogne <s.jodogne@gmail.com> parents: 4513 diff changeset	965 }
5b929e6b3c36 removal of "dicom-as-json" attachments Sebastien Jodogne <s.jodogne@gmail.com> parents: 4513 diff changeset	966
5b929e6b3c36 removal of "dicom-as-json" attachments Sebastien Jodogne <s.jodogne@gmail.com> parents: 4513 diff changeset	967
2124 2b1520efa282 cleaning up Sebastien Jodogne <s.jodogne@gmail.com> parents: 2122 diff changeset	968 void ServerContext::ReadDicomAsJson(Json::Value& result,
2409 e4045b3c9772 ignore-length argument if retrieving DICOM tags Sebastien Jodogne <s.jodogne@gmail.com> parents: 2382 diff changeset	969 const std::string& instancePublicId,
e4045b3c9772 ignore-length argument if retrieving DICOM tags Sebastien Jodogne <s.jodogne@gmail.com> parents: 2382 diff changeset	970 const std::set<DicomTag>& ignoreTagLength)
226 8a26a8e85edf refactoring to read files Sebastien Jodogne <s.jodogne@gmail.com> parents: 224 diff changeset	971 {
4514 5b929e6b3c36 removal of "dicom-as-json" attachments Sebastien Jodogne <s.jodogne@gmail.com> parents: 4513 diff changeset	972 /**
5b929e6b3c36 removal of "dicom-as-json" attachments Sebastien Jodogne <s.jodogne@gmail.com> parents: 4513 diff changeset	973 * CASE 1: The DICOM file, truncated at pixel data, is available
5b929e6b3c36 removal of "dicom-as-json" attachments Sebastien Jodogne <s.jodogne@gmail.com> parents: 4513 diff changeset	974 * as an attachment (it was created either because the storage
4666 3294385a245a typo Alain Mazy <am@osimis.io> parents: 4640 diff changeset	975 * area does not support range reads, or if "StorageCompression"
4514 5b929e6b3c36 removal of "dicom-as-json" attachments Sebastien Jodogne <s.jodogne@gmail.com> parents: 4513 diff changeset	976 * is enabled). Simply return this attachment.
5b929e6b3c36 removal of "dicom-as-json" attachments Sebastien Jodogne <s.jodogne@gmail.com> parents: 4513 diff changeset	977 **/
5b929e6b3c36 removal of "dicom-as-json" attachments Sebastien Jodogne <s.jodogne@gmail.com> parents: 4513 diff changeset	978
5b929e6b3c36 removal of "dicom-as-json" attachments Sebastien Jodogne <s.jodogne@gmail.com> parents: 4513 diff changeset	979 FileInfo attachment;
4629 88e892e25a51 cppcheck Sebastien Jodogne <s.jodogne@gmail.com> parents: 4627 diff changeset	980 int64_t revision; // Ignored
4514 5b929e6b3c36 removal of "dicom-as-json" attachments Sebastien Jodogne <s.jodogne@gmail.com> parents: 4513 diff changeset	981
4627 f7d5372b59b3 handling revisions of attachments Sebastien Jodogne <s.jodogne@gmail.com> parents: 4623 diff changeset	982 if (index_.LookupAttachment(attachment, revision, instancePublicId, FileContentType_DicomUntilPixelData))
2409 e4045b3c9772 ignore-length argument if retrieving DICOM tags Sebastien Jodogne <s.jodogne@gmail.com> parents: 2382 diff changeset	983 {
4514 5b929e6b3c36 removal of "dicom-as-json" attachments Sebastien Jodogne <s.jodogne@gmail.com> parents: 4513 diff changeset	984 std::string dicom;
4513 1f455b86b054 simplification in ServerContext Sebastien Jodogne <s.jodogne@gmail.com> parents: 4511 diff changeset	985
1f455b86b054 simplification in ServerContext Sebastien Jodogne <s.jodogne@gmail.com> parents: 4511 diff changeset	986 {
5184 dd085f7e7e71 cleaning new constructors of StorageAccessor Sebastien Jodogne <s.jodogne@gmail.com> parents: 5183 diff changeset	987 StorageAccessor accessor(area_, storageCache_, GetMetricsRegistry());
4514 5b929e6b3c36 removal of "dicom-as-json" attachments Sebastien Jodogne <s.jodogne@gmail.com> parents: 4513 diff changeset	988 accessor.Read(dicom, attachment);
5b929e6b3c36 removal of "dicom-as-json" attachments Sebastien Jodogne <s.jodogne@gmail.com> parents: 4513 diff changeset	989 }
5b929e6b3c36 removal of "dicom-as-json" attachments Sebastien Jodogne <s.jodogne@gmail.com> parents: 4513 diff changeset	990
5b929e6b3c36 removal of "dicom-as-json" attachments Sebastien Jodogne <s.jodogne@gmail.com> parents: 4513 diff changeset	991 ParsedDicomFile parsed(dicom);
5b929e6b3c36 removal of "dicom-as-json" attachments Sebastien Jodogne <s.jodogne@gmail.com> parents: 4513 diff changeset	992 OrthancConfiguration::DefaultDicomDatasetToJson(result, parsed, ignoreTagLength);
5b929e6b3c36 removal of "dicom-as-json" attachments Sebastien Jodogne <s.jodogne@gmail.com> parents: 4513 diff changeset	993 InjectEmptyPixelData(result);
5b929e6b3c36 removal of "dicom-as-json" attachments Sebastien Jodogne <s.jodogne@gmail.com> parents: 4513 diff changeset	994 }
5b929e6b3c36 removal of "dicom-as-json" attachments Sebastien Jodogne <s.jodogne@gmail.com> parents: 4513 diff changeset	995 else
5b929e6b3c36 removal of "dicom-as-json" attachments Sebastien Jodogne <s.jodogne@gmail.com> parents: 4513 diff changeset	996 {
5b929e6b3c36 removal of "dicom-as-json" attachments Sebastien Jodogne <s.jodogne@gmail.com> parents: 4513 diff changeset	997 /**
5b929e6b3c36 removal of "dicom-as-json" attachments Sebastien Jodogne <s.jodogne@gmail.com> parents: 4513 diff changeset	998 * The truncated DICOM file is not stored as a standalone
5b929e6b3c36 removal of "dicom-as-json" attachments Sebastien Jodogne <s.jodogne@gmail.com> parents: 4513 diff changeset	999 * attachment. Lookup whether the pixel data offset has already
5b929e6b3c36 removal of "dicom-as-json" attachments Sebastien Jodogne <s.jodogne@gmail.com> parents: 4513 diff changeset	1000 * been computed for this instance.
5b929e6b3c36 removal of "dicom-as-json" attachments Sebastien Jodogne <s.jodogne@gmail.com> parents: 4513 diff changeset	1001 **/
5b929e6b3c36 removal of "dicom-as-json" attachments Sebastien Jodogne <s.jodogne@gmail.com> parents: 4513 diff changeset	1002
5b929e6b3c36 removal of "dicom-as-json" attachments Sebastien Jodogne <s.jodogne@gmail.com> parents: 4513 diff changeset	1003 bool hasPixelDataOffset;
4519 a3c6678aa7b1 cppcheck Sebastien Jodogne <s.jodogne@gmail.com> parents: 4514 diff changeset	1004 uint64_t pixelDataOffset = 0; // dummy initialization
4514 5b929e6b3c36 removal of "dicom-as-json" attachments Sebastien Jodogne <s.jodogne@gmail.com> parents: 4513 diff changeset	1005
5b929e6b3c36 removal of "dicom-as-json" attachments Sebastien Jodogne <s.jodogne@gmail.com> parents: 4513 diff changeset	1006 {
5b929e6b3c36 removal of "dicom-as-json" attachments Sebastien Jodogne <s.jodogne@gmail.com> parents: 4513 diff changeset	1007 std::string s;
4623 95ffe3b6ef7c handling of revisions for metadata Sebastien Jodogne <s.jodogne@gmail.com> parents: 4607 diff changeset	1008 if (index_.LookupMetadata(s, revision, instancePublicId, ResourceType_Instance,
4514 5b929e6b3c36 removal of "dicom-as-json" attachments Sebastien Jodogne <s.jodogne@gmail.com> parents: 4513 diff changeset	1009 MetadataType_Instance_PixelDataOffset))
4513 1f455b86b054 simplification in ServerContext Sebastien Jodogne <s.jodogne@gmail.com> parents: 4511 diff changeset	1010 {
4514 5b929e6b3c36 removal of "dicom-as-json" attachments Sebastien Jodogne <s.jodogne@gmail.com> parents: 4513 diff changeset	1011 hasPixelDataOffset = false;
5b929e6b3c36 removal of "dicom-as-json" attachments Sebastien Jodogne <s.jodogne@gmail.com> parents: 4513 diff changeset	1012
5b929e6b3c36 removal of "dicom-as-json" attachments Sebastien Jodogne <s.jodogne@gmail.com> parents: 4513 diff changeset	1013 if (!s.empty())
5b929e6b3c36 removal of "dicom-as-json" attachments Sebastien Jodogne <s.jodogne@gmail.com> parents: 4513 diff changeset	1014 {
5b929e6b3c36 removal of "dicom-as-json" attachments Sebastien Jodogne <s.jodogne@gmail.com> parents: 4513 diff changeset	1015 try
5b929e6b3c36 removal of "dicom-as-json" attachments Sebastien Jodogne <s.jodogne@gmail.com> parents: 4513 diff changeset	1016 {
5b929e6b3c36 removal of "dicom-as-json" attachments Sebastien Jodogne <s.jodogne@gmail.com> parents: 4513 diff changeset	1017 pixelDataOffset = boost::lexical_cast<uint64_t>(s);
5b929e6b3c36 removal of "dicom-as-json" attachments Sebastien Jodogne <s.jodogne@gmail.com> parents: 4513 diff changeset	1018 hasPixelDataOffset = true;
5b929e6b3c36 removal of "dicom-as-json" attachments Sebastien Jodogne <s.jodogne@gmail.com> parents: 4513 diff changeset	1019 }
5b929e6b3c36 removal of "dicom-as-json" attachments Sebastien Jodogne <s.jodogne@gmail.com> parents: 4513 diff changeset	1020 catch (boost::bad_lexical_cast&)
5b929e6b3c36 removal of "dicom-as-json" attachments Sebastien Jodogne <s.jodogne@gmail.com> parents: 4513 diff changeset	1021 {
5b929e6b3c36 removal of "dicom-as-json" attachments Sebastien Jodogne <s.jodogne@gmail.com> parents: 4513 diff changeset	1022 }
5b929e6b3c36 removal of "dicom-as-json" attachments Sebastien Jodogne <s.jodogne@gmail.com> parents: 4513 diff changeset	1023 }
5b929e6b3c36 removal of "dicom-as-json" attachments Sebastien Jodogne <s.jodogne@gmail.com> parents: 4513 diff changeset	1024
5b929e6b3c36 removal of "dicom-as-json" attachments Sebastien Jodogne <s.jodogne@gmail.com> parents: 4513 diff changeset	1025 if (!hasPixelDataOffset)
5b929e6b3c36 removal of "dicom-as-json" attachments Sebastien Jodogne <s.jodogne@gmail.com> parents: 4513 diff changeset	1026 {
5b929e6b3c36 removal of "dicom-as-json" attachments Sebastien Jodogne <s.jodogne@gmail.com> parents: 4513 diff changeset	1027 LOG(ERROR) << "Metadata \"PixelDataOffset\" is corrupted for instance: " << instancePublicId;
5b929e6b3c36 removal of "dicom-as-json" attachments Sebastien Jodogne <s.jodogne@gmail.com> parents: 4513 diff changeset	1028 }
4513 1f455b86b054 simplification in ServerContext Sebastien Jodogne <s.jodogne@gmail.com> parents: 4511 diff changeset	1029 }
1f455b86b054 simplification in ServerContext Sebastien Jodogne <s.jodogne@gmail.com> parents: 4511 diff changeset	1030 else
1f455b86b054 simplification in ServerContext Sebastien Jodogne <s.jodogne@gmail.com> parents: 4511 diff changeset	1031 {
4514 5b929e6b3c36 removal of "dicom-as-json" attachments Sebastien Jodogne <s.jodogne@gmail.com> parents: 4513 diff changeset	1032 // This instance was created by a version of Orthanc <= 1.9.0
5b929e6b3c36 removal of "dicom-as-json" attachments Sebastien Jodogne <s.jodogne@gmail.com> parents: 4513 diff changeset	1033 hasPixelDataOffset = false;
5b929e6b3c36 removal of "dicom-as-json" attachments Sebastien Jodogne <s.jodogne@gmail.com> parents: 4513 diff changeset	1034 }
5b929e6b3c36 removal of "dicom-as-json" attachments Sebastien Jodogne <s.jodogne@gmail.com> parents: 4513 diff changeset	1035 }
5b929e6b3c36 removal of "dicom-as-json" attachments Sebastien Jodogne <s.jodogne@gmail.com> parents: 4513 diff changeset	1036
5b929e6b3c36 removal of "dicom-as-json" attachments Sebastien Jodogne <s.jodogne@gmail.com> parents: 4513 diff changeset	1037
5b929e6b3c36 removal of "dicom-as-json" attachments Sebastien Jodogne <s.jodogne@gmail.com> parents: 4513 diff changeset	1038 if (hasPixelDataOffset &&
5b929e6b3c36 removal of "dicom-as-json" attachments Sebastien Jodogne <s.jodogne@gmail.com> parents: 4513 diff changeset	1039 area_.HasReadRange() &&
4627 f7d5372b59b3 handling revisions of attachments Sebastien Jodogne <s.jodogne@gmail.com> parents: 4623 diff changeset	1040 index_.LookupAttachment(attachment, revision, instancePublicId, FileContentType_Dicom) &&
4514 5b929e6b3c36 removal of "dicom-as-json" attachments Sebastien Jodogne <s.jodogne@gmail.com> parents: 4513 diff changeset	1041 attachment.GetCompressionType() == CompressionType_None)
5b929e6b3c36 removal of "dicom-as-json" attachments Sebastien Jodogne <s.jodogne@gmail.com> parents: 4513 diff changeset	1042 {
5b929e6b3c36 removal of "dicom-as-json" attachments Sebastien Jodogne <s.jodogne@gmail.com> parents: 4513 diff changeset	1043 /**
5b929e6b3c36 removal of "dicom-as-json" attachments Sebastien Jodogne <s.jodogne@gmail.com> parents: 4513 diff changeset	1044 * CASE 2: The pixel data offset is known, AND that a range read
5b929e6b3c36 removal of "dicom-as-json" attachments Sebastien Jodogne <s.jodogne@gmail.com> parents: 4513 diff changeset	1045 * can be used to retrieve the truncated DICOM file. Note that
5b929e6b3c36 removal of "dicom-as-json" attachments Sebastien Jodogne <s.jodogne@gmail.com> parents: 4513 diff changeset	1046 * this case cannot be used if "StorageCompression" option is
5b929e6b3c36 removal of "dicom-as-json" attachments Sebastien Jodogne <s.jodogne@gmail.com> parents: 4513 diff changeset	1047 * "true".
5b929e6b3c36 removal of "dicom-as-json" attachments Sebastien Jodogne <s.jodogne@gmail.com> parents: 4513 diff changeset	1048 **/
5b929e6b3c36 removal of "dicom-as-json" attachments Sebastien Jodogne <s.jodogne@gmail.com> parents: 4513 diff changeset	1049
4900 ea5f1c6ed07e fix cache of storage area Sebastien Jodogne <s.jodogne@gmail.com> parents: 4892 diff changeset	1050 std::string dicom;
ea5f1c6ed07e fix cache of storage area Sebastien Jodogne <s.jodogne@gmail.com> parents: 4892 diff changeset	1051
4519 a3c6678aa7b1 cppcheck Sebastien Jodogne <s.jodogne@gmail.com> parents: 4514 diff changeset	1052 {
5184 dd085f7e7e71 cleaning new constructors of StorageAccessor Sebastien Jodogne <s.jodogne@gmail.com> parents: 5183 diff changeset	1053 StorageAccessor accessor(area_, storageCache_, GetMetricsRegistry());
4900 ea5f1c6ed07e fix cache of storage area Sebastien Jodogne <s.jodogne@gmail.com> parents: 4892 diff changeset	1054 accessor.ReadStartRange(dicom, attachment.GetUuid(), FileContentType_Dicom, pixelDataOffset);
4514 5b929e6b3c36 removal of "dicom-as-json" attachments Sebastien Jodogne <s.jodogne@gmail.com> parents: 4513 diff changeset	1055 }
4900 ea5f1c6ed07e fix cache of storage area Sebastien Jodogne <s.jodogne@gmail.com> parents: 4892 diff changeset	1056
ea5f1c6ed07e fix cache of storage area Sebastien Jodogne <s.jodogne@gmail.com> parents: 4892 diff changeset	1057 assert(dicom.size() == pixelDataOffset);
ea5f1c6ed07e fix cache of storage area Sebastien Jodogne <s.jodogne@gmail.com> parents: 4892 diff changeset	1058 ParsedDicomFile parsed(dicom);
ea5f1c6ed07e fix cache of storage area Sebastien Jodogne <s.jodogne@gmail.com> parents: 4892 diff changeset	1059 OrthancConfiguration::DefaultDicomDatasetToJson(result, parsed, ignoreTagLength);
ea5f1c6ed07e fix cache of storage area Sebastien Jodogne <s.jodogne@gmail.com> parents: 4892 diff changeset	1060 InjectEmptyPixelData(result);
4514 5b929e6b3c36 removal of "dicom-as-json" attachments Sebastien Jodogne <s.jodogne@gmail.com> parents: 4513 diff changeset	1061 }
5b929e6b3c36 removal of "dicom-as-json" attachments Sebastien Jodogne <s.jodogne@gmail.com> parents: 4513 diff changeset	1062 else if (ignoreTagLength.empty() &&
4627 f7d5372b59b3 handling revisions of attachments Sebastien Jodogne <s.jodogne@gmail.com> parents: 4623 diff changeset	1063 index_.LookupAttachment(attachment, revision, instancePublicId, FileContentType_DicomAsJson))
4514 5b929e6b3c36 removal of "dicom-as-json" attachments Sebastien Jodogne <s.jodogne@gmail.com> parents: 4513 diff changeset	1064 {
5b929e6b3c36 removal of "dicom-as-json" attachments Sebastien Jodogne <s.jodogne@gmail.com> parents: 4513 diff changeset	1065 /**
5b929e6b3c36 removal of "dicom-as-json" attachments Sebastien Jodogne <s.jodogne@gmail.com> parents: 4513 diff changeset	1066 * CASE 3: This instance was created using Orthanc <=
5b929e6b3c36 removal of "dicom-as-json" attachments Sebastien Jodogne <s.jodogne@gmail.com> parents: 4513 diff changeset	1067 * 1.9.0. Reuse the old "DICOM-as-JSON" attachment if available.
5b929e6b3c36 removal of "dicom-as-json" attachments Sebastien Jodogne <s.jodogne@gmail.com> parents: 4513 diff changeset	1068 * This is for backward compatibility: A call to
5b929e6b3c36 removal of "dicom-as-json" attachments Sebastien Jodogne <s.jodogne@gmail.com> parents: 4513 diff changeset	1069 * "/tools/invalidate-tags" or to one flavors of
5b929e6b3c36 removal of "dicom-as-json" attachments Sebastien Jodogne <s.jodogne@gmail.com> parents: 4513 diff changeset	1070 * "/.../.../reconstruct" will disable this case.
5b929e6b3c36 removal of "dicom-as-json" attachments Sebastien Jodogne <s.jodogne@gmail.com> parents: 4513 diff changeset	1071 **/
5b929e6b3c36 removal of "dicom-as-json" attachments Sebastien Jodogne <s.jodogne@gmail.com> parents: 4513 diff changeset	1072
5b929e6b3c36 removal of "dicom-as-json" attachments Sebastien Jodogne <s.jodogne@gmail.com> parents: 4513 diff changeset	1073 std::string dicomAsJson;
4513 1f455b86b054 simplification in ServerContext Sebastien Jodogne <s.jodogne@gmail.com> parents: 4511 diff changeset	1074
4514 5b929e6b3c36 removal of "dicom-as-json" attachments Sebastien Jodogne <s.jodogne@gmail.com> parents: 4513 diff changeset	1075 {
5184 dd085f7e7e71 cleaning new constructors of StorageAccessor Sebastien Jodogne <s.jodogne@gmail.com> parents: 5183 diff changeset	1076 StorageAccessor accessor(area_, storageCache_, GetMetricsRegistry());
4514 5b929e6b3c36 removal of "dicom-as-json" attachments Sebastien Jodogne <s.jodogne@gmail.com> parents: 4513 diff changeset	1077 accessor.Read(dicomAsJson, attachment);
5b929e6b3c36 removal of "dicom-as-json" attachments Sebastien Jodogne <s.jodogne@gmail.com> parents: 4513 diff changeset	1078 }
4513 1f455b86b054 simplification in ServerContext Sebastien Jodogne <s.jodogne@gmail.com> parents: 4511 diff changeset	1079
4514 5b929e6b3c36 removal of "dicom-as-json" attachments Sebastien Jodogne <s.jodogne@gmail.com> parents: 4513 diff changeset	1080 if (!Toolbox::ReadJson(result, dicomAsJson))
5b929e6b3c36 removal of "dicom-as-json" attachments Sebastien Jodogne <s.jodogne@gmail.com> parents: 4513 diff changeset	1081 {
5b929e6b3c36 removal of "dicom-as-json" attachments Sebastien Jodogne <s.jodogne@gmail.com> parents: 4513 diff changeset	1082 throw OrthancException(ErrorCode_CorruptedFile,
5b929e6b3c36 removal of "dicom-as-json" attachments Sebastien Jodogne <s.jodogne@gmail.com> parents: 4513 diff changeset	1083 "Corrupted DICOM-as-JSON attachment of instance: " + instancePublicId);
5b929e6b3c36 removal of "dicom-as-json" attachments Sebastien Jodogne <s.jodogne@gmail.com> parents: 4513 diff changeset	1084 }
5b929e6b3c36 removal of "dicom-as-json" attachments Sebastien Jodogne <s.jodogne@gmail.com> parents: 4513 diff changeset	1085 }
5b929e6b3c36 removal of "dicom-as-json" attachments Sebastien Jodogne <s.jodogne@gmail.com> parents: 4513 diff changeset	1086 else
5b929e6b3c36 removal of "dicom-as-json" attachments Sebastien Jodogne <s.jodogne@gmail.com> parents: 4513 diff changeset	1087 {
5b929e6b3c36 removal of "dicom-as-json" attachments Sebastien Jodogne <s.jodogne@gmail.com> parents: 4513 diff changeset	1088 /**
5b929e6b3c36 removal of "dicom-as-json" attachments Sebastien Jodogne <s.jodogne@gmail.com> parents: 4513 diff changeset	1089 * CASE 4: Neither the truncated DICOM file is accessible, nor
5b929e6b3c36 removal of "dicom-as-json" attachments Sebastien Jodogne <s.jodogne@gmail.com> parents: 4513 diff changeset	1090 * the DICOM-as-JSON summary. We have to retrieve the full DICOM
5b929e6b3c36 removal of "dicom-as-json" attachments Sebastien Jodogne <s.jodogne@gmail.com> parents: 4513 diff changeset	1091 * file from the storage area.
5b929e6b3c36 removal of "dicom-as-json" attachments Sebastien Jodogne <s.jodogne@gmail.com> parents: 4513 diff changeset	1092 **/
5b929e6b3c36 removal of "dicom-as-json" attachments Sebastien Jodogne <s.jodogne@gmail.com> parents: 4513 diff changeset	1093
5b929e6b3c36 removal of "dicom-as-json" attachments Sebastien Jodogne <s.jodogne@gmail.com> parents: 4513 diff changeset	1094 std::string dicom;
5b929e6b3c36 removal of "dicom-as-json" attachments Sebastien Jodogne <s.jodogne@gmail.com> parents: 4513 diff changeset	1095 ReadDicom(dicom, instancePublicId);
4513 1f455b86b054 simplification in ServerContext Sebastien Jodogne <s.jodogne@gmail.com> parents: 4511 diff changeset	1096
4514 5b929e6b3c36 removal of "dicom-as-json" attachments Sebastien Jodogne <s.jodogne@gmail.com> parents: 4513 diff changeset	1097 ParsedDicomFile parsed(dicom);
5b929e6b3c36 removal of "dicom-as-json" attachments Sebastien Jodogne <s.jodogne@gmail.com> parents: 4513 diff changeset	1098 OrthancConfiguration::DefaultDicomDatasetToJson(result, parsed, ignoreTagLength);
5b929e6b3c36 removal of "dicom-as-json" attachments Sebastien Jodogne <s.jodogne@gmail.com> parents: 4513 diff changeset	1099
5b929e6b3c36 removal of "dicom-as-json" attachments Sebastien Jodogne <s.jodogne@gmail.com> parents: 4513 diff changeset	1100 if (!hasPixelDataOffset)
5b929e6b3c36 removal of "dicom-as-json" attachments Sebastien Jodogne <s.jodogne@gmail.com> parents: 4513 diff changeset	1101 {
5b929e6b3c36 removal of "dicom-as-json" attachments Sebastien Jodogne <s.jodogne@gmail.com> parents: 4513 diff changeset	1102 /**
5b929e6b3c36 removal of "dicom-as-json" attachments Sebastien Jodogne <s.jodogne@gmail.com> parents: 4513 diff changeset	1103 * The pixel data offset was never computed for this
5b929e6b3c36 removal of "dicom-as-json" attachments Sebastien Jodogne <s.jodogne@gmail.com> parents: 4513 diff changeset	1104 * instance, which indicates that it was created using
5b929e6b3c36 removal of "dicom-as-json" attachments Sebastien Jodogne <s.jodogne@gmail.com> parents: 4513 diff changeset	1105 * Orthanc <= 1.9.0, or that calls to
5b929e6b3c36 removal of "dicom-as-json" attachments Sebastien Jodogne <s.jodogne@gmail.com> parents: 4513 diff changeset	1106 * "LookupPixelDataOffset()" from earlier versions of
5b929e6b3c36 removal of "dicom-as-json" attachments Sebastien Jodogne <s.jodogne@gmail.com> parents: 4513 diff changeset	1107 * Orthanc have failed. Try again this precomputation now
5b929e6b3c36 removal of "dicom-as-json" attachments Sebastien Jodogne <s.jodogne@gmail.com> parents: 4513 diff changeset	1108 * for future calls.
5b929e6b3c36 removal of "dicom-as-json" attachments Sebastien Jodogne <s.jodogne@gmail.com> parents: 4513 diff changeset	1109 **/
5316 03501a258d9e added instance metadata "PixelDataVR" Sebastien Jodogne <s.jodogne@gmail.com> parents: 5296 diff changeset	1110 ValueRepresentation pixelDataVR;
03501a258d9e added instance metadata "PixelDataVR" Sebastien Jodogne <s.jodogne@gmail.com> parents: 5296 diff changeset	1111 if (DicomStreamReader::LookupPixelDataOffset(pixelDataOffset, pixelDataVR, dicom) &&
4514 5b929e6b3c36 removal of "dicom-as-json" attachments Sebastien Jodogne <s.jodogne@gmail.com> parents: 4513 diff changeset	1112 pixelDataOffset < dicom.size())
4513 1f455b86b054 simplification in ServerContext Sebastien Jodogne <s.jodogne@gmail.com> parents: 4511 diff changeset	1113 {
4623 95ffe3b6ef7c handling of revisions for metadata Sebastien Jodogne <s.jodogne@gmail.com> parents: 4607 diff changeset	1114 index_.OverwriteMetadata(instancePublicId, MetadataType_Instance_PixelDataOffset,
95ffe3b6ef7c handling of revisions for metadata Sebastien Jodogne <s.jodogne@gmail.com> parents: 4607 diff changeset	1115 boost::lexical_cast<std::string>(pixelDataOffset));
4514 5b929e6b3c36 removal of "dicom-as-json" attachments Sebastien Jodogne <s.jodogne@gmail.com> parents: 4513 diff changeset	1116
5b929e6b3c36 removal of "dicom-as-json" attachments Sebastien Jodogne <s.jodogne@gmail.com> parents: 4513 diff changeset	1117 if (!area_.HasReadRange() \|\|
4519 a3c6678aa7b1 cppcheck Sebastien Jodogne <s.jodogne@gmail.com> parents: 4514 diff changeset	1118 compressionEnabled_)
4514 5b929e6b3c36 removal of "dicom-as-json" attachments Sebastien Jodogne <s.jodogne@gmail.com> parents: 4513 diff changeset	1119 {
4627 f7d5372b59b3 handling revisions of attachments Sebastien Jodogne <s.jodogne@gmail.com> parents: 4623 diff changeset	1120 int64_t newRevision;
f7d5372b59b3 handling revisions of attachments Sebastien Jodogne <s.jodogne@gmail.com> parents: 4623 diff changeset	1121 AddAttachment(newRevision, instancePublicId, FileContentType_DicomUntilPixelData,
f7d5372b59b3 handling revisions of attachments Sebastien Jodogne <s.jodogne@gmail.com> parents: 4623 diff changeset	1122 dicom.empty() ? NULL: dicom.c_str(), pixelDataOffset,
4640 66109d24d26e "ETag" headers for metadata and attachments now allow strong comparison (MD5 is included) Sebastien Jodogne <s.jodogne@gmail.com> parents: 4629 diff changeset	1123 false /* no old revision /, -1 / dummy revision /, "" / dummy MD5 */);
4514 5b929e6b3c36 removal of "dicom-as-json" attachments Sebastien Jodogne <s.jodogne@gmail.com> parents: 4513 diff changeset	1124 }
4513 1f455b86b054 simplification in ServerContext Sebastien Jodogne <s.jodogne@gmail.com> parents: 4511 diff changeset	1125 }
1f455b86b054 simplification in ServerContext Sebastien Jodogne <s.jodogne@gmail.com> parents: 4511 diff changeset	1126 }
1f455b86b054 simplification in ServerContext Sebastien Jodogne <s.jodogne@gmail.com> parents: 4511 diff changeset	1127 }
226 8a26a8e85edf refactoring to read files Sebastien Jodogne <s.jodogne@gmail.com> parents: 224 diff changeset	1128 }
8a26a8e85edf refactoring to read files Sebastien Jodogne <s.jodogne@gmail.com> parents: 224 diff changeset	1129 }
227 209ca3f6db62 dicom-scu from rest Sebastien Jodogne <s.jodogne@gmail.com> parents: 226 diff changeset	1130
209ca3f6db62 dicom-scu from rest Sebastien Jodogne <s.jodogne@gmail.com> parents: 226 diff changeset	1131
4511 1ec156a0da38 ServerContext::ReadDicomUntilPixelData() Sebastien Jodogne <s.jodogne@gmail.com> parents: 4509 diff changeset	1132 void ServerContext::ReadDicomAsJson(Json::Value& result,
1ec156a0da38 ServerContext::ReadDicomUntilPixelData() Sebastien Jodogne <s.jodogne@gmail.com> parents: 4509 diff changeset	1133 const std::string& instancePublicId)
1ec156a0da38 ServerContext::ReadDicomUntilPixelData() Sebastien Jodogne <s.jodogne@gmail.com> parents: 4509 diff changeset	1134 {
1ec156a0da38 ServerContext::ReadDicomUntilPixelData() Sebastien Jodogne <s.jodogne@gmail.com> parents: 4509 diff changeset	1135 std::set<DicomTag> ignoreTagLength;
1ec156a0da38 ServerContext::ReadDicomUntilPixelData() Sebastien Jodogne <s.jodogne@gmail.com> parents: 4509 diff changeset	1136 ReadDicomAsJson(result, instancePublicId, ignoreTagLength);
1ec156a0da38 ServerContext::ReadDicomUntilPixelData() Sebastien Jodogne <s.jodogne@gmail.com> parents: 4509 diff changeset	1137 }
1ec156a0da38 ServerContext::ReadDicomUntilPixelData() Sebastien Jodogne <s.jodogne@gmail.com> parents: 4509 diff changeset	1138
1ec156a0da38 ServerContext::ReadDicomUntilPixelData() Sebastien Jodogne <s.jodogne@gmail.com> parents: 4509 diff changeset	1139
4509 98b7b9d21d83 removed ServerContext::ReadAttachment() Sebastien Jodogne <s.jodogne@gmail.com> parents: 4508 diff changeset	1140 void ServerContext::ReadDicom(std::string& dicom,
98b7b9d21d83 removed ServerContext::ReadAttachment() Sebastien Jodogne <s.jodogne@gmail.com> parents: 4508 diff changeset	1141 const std::string& instancePublicId)
98b7b9d21d83 removed ServerContext::ReadAttachment() Sebastien Jodogne <s.jodogne@gmail.com> parents: 4508 diff changeset	1142 {
4627 f7d5372b59b3 handling revisions of attachments Sebastien Jodogne <s.jodogne@gmail.com> parents: 4623 diff changeset	1143 int64_t revision;
f7d5372b59b3 handling revisions of attachments Sebastien Jodogne <s.jodogne@gmail.com> parents: 4623 diff changeset	1144 ReadAttachment(dicom, revision, instancePublicId, FileContentType_Dicom, true /* uncompress */);
4509 98b7b9d21d83 removed ServerContext::ReadAttachment() Sebastien Jodogne <s.jodogne@gmail.com> parents: 4508 diff changeset	1145 }
4792 434843934307 Added a StorageCache in the StorageAccessor Alain Mazy <am@osimis.io> parents: 4789 diff changeset	1146
434843934307 Added a StorageCache in the StorageAccessor Alain Mazy <am@osimis.io> parents: 4789 diff changeset	1147 void ServerContext::ReadDicomForHeader(std::string& dicom,
434843934307 Added a StorageCache in the StorageAccessor Alain Mazy <am@osimis.io> parents: 4789 diff changeset	1148 const std::string& instancePublicId)
434843934307 Added a StorageCache in the StorageAccessor Alain Mazy <am@osimis.io> parents: 4789 diff changeset	1149 {
434843934307 Added a StorageCache in the StorageAccessor Alain Mazy <am@osimis.io> parents: 4789 diff changeset	1150 if (!ReadDicomUntilPixelData(dicom, instancePublicId))
434843934307 Added a StorageCache in the StorageAccessor Alain Mazy <am@osimis.io> parents: 4789 diff changeset	1151 {
434843934307 Added a StorageCache in the StorageAccessor Alain Mazy <am@osimis.io> parents: 4789 diff changeset	1152 ReadDicom(dicom, instancePublicId);
434843934307 Added a StorageCache in the StorageAccessor Alain Mazy <am@osimis.io> parents: 4789 diff changeset	1153 }
434843934307 Added a StorageCache in the StorageAccessor Alain Mazy <am@osimis.io> parents: 4789 diff changeset	1154 }
4509 98b7b9d21d83 removed ServerContext::ReadAttachment() Sebastien Jodogne <s.jodogne@gmail.com> parents: 4508 diff changeset	1155
4511 1ec156a0da38 ServerContext::ReadDicomUntilPixelData() Sebastien Jodogne <s.jodogne@gmail.com> parents: 4509 diff changeset	1156 bool ServerContext::ReadDicomUntilPixelData(std::string& dicom,
1ec156a0da38 ServerContext::ReadDicomUntilPixelData() Sebastien Jodogne <s.jodogne@gmail.com> parents: 4509 diff changeset	1157 const std::string& instancePublicId)
1ec156a0da38 ServerContext::ReadDicomUntilPixelData() Sebastien Jodogne <s.jodogne@gmail.com> parents: 4509 diff changeset	1158 {
5333 816968b5a031 speeded up ServerContext::ReadDicomUntilPixelData() if storage compression is on Sebastien Jodogne <s.jodogne@gmail.com> parents: 5330 diff changeset	1159 FileInfo attachment;
816968b5a031 speeded up ServerContext::ReadDicomUntilPixelData() if storage compression is on Sebastien Jodogne <s.jodogne@gmail.com> parents: 5330 diff changeset	1160 int64_t revision; // Ignored
816968b5a031 speeded up ServerContext::ReadDicomUntilPixelData() if storage compression is on Sebastien Jodogne <s.jodogne@gmail.com> parents: 5330 diff changeset	1161 if (index_.LookupAttachment(attachment, revision, instancePublicId, FileContentType_DicomUntilPixelData))
816968b5a031 speeded up ServerContext::ReadDicomUntilPixelData() if storage compression is on Sebastien Jodogne <s.jodogne@gmail.com> parents: 5330 diff changeset	1162 {
816968b5a031 speeded up ServerContext::ReadDicomUntilPixelData() if storage compression is on Sebastien Jodogne <s.jodogne@gmail.com> parents: 5330 diff changeset	1163 StorageAccessor accessor(area_, storageCache_, GetMetricsRegistry());
816968b5a031 speeded up ServerContext::ReadDicomUntilPixelData() if storage compression is on Sebastien Jodogne <s.jodogne@gmail.com> parents: 5330 diff changeset	1164
816968b5a031 speeded up ServerContext::ReadDicomUntilPixelData() if storage compression is on Sebastien Jodogne <s.jodogne@gmail.com> parents: 5330 diff changeset	1165 accessor.Read(dicom, attachment);
816968b5a031 speeded up ServerContext::ReadDicomUntilPixelData() if storage compression is on Sebastien Jodogne <s.jodogne@gmail.com> parents: 5330 diff changeset	1166 assert(dicom.size() == attachment.GetUncompressedSize());
816968b5a031 speeded up ServerContext::ReadDicomUntilPixelData() if storage compression is on Sebastien Jodogne <s.jodogne@gmail.com> parents: 5330 diff changeset	1167
816968b5a031 speeded up ServerContext::ReadDicomUntilPixelData() if storage compression is on Sebastien Jodogne <s.jodogne@gmail.com> parents: 5330 diff changeset	1168 return true;
816968b5a031 speeded up ServerContext::ReadDicomUntilPixelData() if storage compression is on Sebastien Jodogne <s.jodogne@gmail.com> parents: 5330 diff changeset	1169 }
816968b5a031 speeded up ServerContext::ReadDicomUntilPixelData() if storage compression is on Sebastien Jodogne <s.jodogne@gmail.com> parents: 5330 diff changeset	1170
4511 1ec156a0da38 ServerContext::ReadDicomUntilPixelData() Sebastien Jodogne <s.jodogne@gmail.com> parents: 4509 diff changeset	1171 if (!area_.HasReadRange())
1ec156a0da38 ServerContext::ReadDicomUntilPixelData() Sebastien Jodogne <s.jodogne@gmail.com> parents: 4509 diff changeset	1172 {
1ec156a0da38 ServerContext::ReadDicomUntilPixelData() Sebastien Jodogne <s.jodogne@gmail.com> parents: 4509 diff changeset	1173 return false;
1ec156a0da38 ServerContext::ReadDicomUntilPixelData() Sebastien Jodogne <s.jodogne@gmail.com> parents: 4509 diff changeset	1174 }
1ec156a0da38 ServerContext::ReadDicomUntilPixelData() Sebastien Jodogne <s.jodogne@gmail.com> parents: 4509 diff changeset	1175
4627 f7d5372b59b3 handling revisions of attachments Sebastien Jodogne <s.jodogne@gmail.com> parents: 4623 diff changeset	1176 if (!index_.LookupAttachment(attachment, revision, instancePublicId, FileContentType_Dicom))
4511 1ec156a0da38 ServerContext::ReadDicomUntilPixelData() Sebastien Jodogne <s.jodogne@gmail.com> parents: 4509 diff changeset	1177 {
1ec156a0da38 ServerContext::ReadDicomUntilPixelData() Sebastien Jodogne <s.jodogne@gmail.com> parents: 4509 diff changeset	1178 throw OrthancException(ErrorCode_InternalError,
1ec156a0da38 ServerContext::ReadDicomUntilPixelData() Sebastien Jodogne <s.jodogne@gmail.com> parents: 4509 diff changeset	1179 "Unable to read the DICOM file of instance " + instancePublicId);
1ec156a0da38 ServerContext::ReadDicomUntilPixelData() Sebastien Jodogne <s.jodogne@gmail.com> parents: 4509 diff changeset	1180 }
1ec156a0da38 ServerContext::ReadDicomUntilPixelData() Sebastien Jodogne <s.jodogne@gmail.com> parents: 4509 diff changeset	1181
1ec156a0da38 ServerContext::ReadDicomUntilPixelData() Sebastien Jodogne <s.jodogne@gmail.com> parents: 4509 diff changeset	1182 std::string s;
1ec156a0da38 ServerContext::ReadDicomUntilPixelData() Sebastien Jodogne <s.jodogne@gmail.com> parents: 4509 diff changeset	1183
1ec156a0da38 ServerContext::ReadDicomUntilPixelData() Sebastien Jodogne <s.jodogne@gmail.com> parents: 4509 diff changeset	1184 if (attachment.GetCompressionType() == CompressionType_None &&
4623 95ffe3b6ef7c handling of revisions for metadata Sebastien Jodogne <s.jodogne@gmail.com> parents: 4607 diff changeset	1185 index_.LookupMetadata(s, revision, instancePublicId, ResourceType_Instance,
4511 1ec156a0da38 ServerContext::ReadDicomUntilPixelData() Sebastien Jodogne <s.jodogne@gmail.com> parents: 4509 diff changeset	1186 MetadataType_Instance_PixelDataOffset) &&
1ec156a0da38 ServerContext::ReadDicomUntilPixelData() Sebastien Jodogne <s.jodogne@gmail.com> parents: 4509 diff changeset	1187 !s.empty())
1ec156a0da38 ServerContext::ReadDicomUntilPixelData() Sebastien Jodogne <s.jodogne@gmail.com> parents: 4509 diff changeset	1188 {
1ec156a0da38 ServerContext::ReadDicomUntilPixelData() Sebastien Jodogne <s.jodogne@gmail.com> parents: 4509 diff changeset	1189 try
1ec156a0da38 ServerContext::ReadDicomUntilPixelData() Sebastien Jodogne <s.jodogne@gmail.com> parents: 4509 diff changeset	1190 {
1ec156a0da38 ServerContext::ReadDicomUntilPixelData() Sebastien Jodogne <s.jodogne@gmail.com> parents: 4509 diff changeset	1191 uint64_t pixelDataOffset = boost::lexical_cast<uint64_t>(s);
1ec156a0da38 ServerContext::ReadDicomUntilPixelData() Sebastien Jodogne <s.jodogne@gmail.com> parents: 4509 diff changeset	1192
5184 dd085f7e7e71 cleaning new constructors of StorageAccessor Sebastien Jodogne <s.jodogne@gmail.com> parents: 5183 diff changeset	1193 StorageAccessor accessor(area_, storageCache_, GetMetricsRegistry());
4792 434843934307 Added a StorageCache in the StorageAccessor Alain Mazy <am@osimis.io> parents: 4789 diff changeset	1194
4900 ea5f1c6ed07e fix cache of storage area Sebastien Jodogne <s.jodogne@gmail.com> parents: 4892 diff changeset	1195 accessor.ReadStartRange(dicom, attachment.GetUuid(), attachment.GetContentType(), pixelDataOffset);
ea5f1c6ed07e fix cache of storage area Sebastien Jodogne <s.jodogne@gmail.com> parents: 4892 diff changeset	1196 assert(dicom.size() == pixelDataOffset);
ea5f1c6ed07e fix cache of storage area Sebastien Jodogne <s.jodogne@gmail.com> parents: 4892 diff changeset	1197
4511 1ec156a0da38 ServerContext::ReadDicomUntilPixelData() Sebastien Jodogne <s.jodogne@gmail.com> parents: 4509 diff changeset	1198 return true; // Success
1ec156a0da38 ServerContext::ReadDicomUntilPixelData() Sebastien Jodogne <s.jodogne@gmail.com> parents: 4509 diff changeset	1199 }
1ec156a0da38 ServerContext::ReadDicomUntilPixelData() Sebastien Jodogne <s.jodogne@gmail.com> parents: 4509 diff changeset	1200 catch (boost::bad_lexical_cast&)
1ec156a0da38 ServerContext::ReadDicomUntilPixelData() Sebastien Jodogne <s.jodogne@gmail.com> parents: 4509 diff changeset	1201 {
1ec156a0da38 ServerContext::ReadDicomUntilPixelData() Sebastien Jodogne <s.jodogne@gmail.com> parents: 4509 diff changeset	1202 LOG(ERROR) << "Metadata \"PixelDataOffset\" is corrupted for instance: " << instancePublicId;
1ec156a0da38 ServerContext::ReadDicomUntilPixelData() Sebastien Jodogne <s.jodogne@gmail.com> parents: 4509 diff changeset	1203 }
1ec156a0da38 ServerContext::ReadDicomUntilPixelData() Sebastien Jodogne <s.jodogne@gmail.com> parents: 4509 diff changeset	1204 }
1ec156a0da38 ServerContext::ReadDicomUntilPixelData() Sebastien Jodogne <s.jodogne@gmail.com> parents: 4509 diff changeset	1205
1ec156a0da38 ServerContext::ReadDicomUntilPixelData() Sebastien Jodogne <s.jodogne@gmail.com> parents: 4509 diff changeset	1206 return false;
1ec156a0da38 ServerContext::ReadDicomUntilPixelData() Sebastien Jodogne <s.jodogne@gmail.com> parents: 4509 diff changeset	1207 }
1ec156a0da38 ServerContext::ReadDicomUntilPixelData() Sebastien Jodogne <s.jodogne@gmail.com> parents: 4509 diff changeset	1208
1ec156a0da38 ServerContext::ReadDicomUntilPixelData() Sebastien Jodogne <s.jodogne@gmail.com> parents: 4509 diff changeset	1209
2128 9329ba17a069 Possibility to DELETE "dicom-as-json" attachments to reconstruct them Sebastien Jodogne <s.jodogne@gmail.com> parents: 2127 diff changeset	1210 void ServerContext::ReadAttachment(std::string& result,
4627 f7d5372b59b3 handling revisions of attachments Sebastien Jodogne <s.jodogne@gmail.com> parents: 4623 diff changeset	1211 int64_t& revision,
2128 9329ba17a069 Possibility to DELETE "dicom-as-json" attachments to reconstruct them Sebastien Jodogne <s.jodogne@gmail.com> parents: 2127 diff changeset	1212 const std::string& instancePublicId,
9329ba17a069 Possibility to DELETE "dicom-as-json" attachments to reconstruct them Sebastien Jodogne <s.jodogne@gmail.com> parents: 2127 diff changeset	1213 FileContentType content,
5048 22966345eaba skip StorageCache when verifying md5 or when re-compressing attachments Alain Mazy <am@osimis.io> parents: 5044 diff changeset	1214 bool uncompressIfNeeded,
22966345eaba skip StorageCache when verifying md5 or when re-compressing attachments Alain Mazy <am@osimis.io> parents: 5044 diff changeset	1215 bool skipCache)
227 209ca3f6db62 dicom-scu from rest Sebastien Jodogne <s.jodogne@gmail.com> parents: 226 diff changeset	1216 {
232 5368bbe813cf refactoring of attachments Sebastien Jodogne <s.jodogne@gmail.com> parents: 227 diff changeset	1217 FileInfo attachment;
4627 f7d5372b59b3 handling revisions of attachments Sebastien Jodogne <s.jodogne@gmail.com> parents: 4623 diff changeset	1218 if (!index_.LookupAttachment(attachment, revision, instancePublicId, content))
227 209ca3f6db62 dicom-scu from rest Sebastien Jodogne <s.jodogne@gmail.com> parents: 226 diff changeset	1219 {
2956 bfee0b9f3209 cont Sebastien Jodogne <s.jodogne@gmail.com> parents: 2950 diff changeset	1220 throw OrthancException(ErrorCode_InternalError,
bfee0b9f3209 cont Sebastien Jodogne <s.jodogne@gmail.com> parents: 2950 diff changeset	1221 "Unable to read attachment " + EnumerationToString(content) +
bfee0b9f3209 cont Sebastien Jodogne <s.jodogne@gmail.com> parents: 2950 diff changeset	1222 " of instance " + instancePublicId);
227 209ca3f6db62 dicom-scu from rest Sebastien Jodogne <s.jodogne@gmail.com> parents: 226 diff changeset	1223 }
1550 2c7d5eb588e6 fix Sebastien Jodogne <s.jodogne@gmail.com> parents: 1549 diff changeset	1224
3175 574890d14c92 new metrics: orthanc_store_dicom_duration_ms, orthanc_storage_[create\|read\|remove]_duration_ms Sebastien Jodogne <s.jodogne@gmail.com> parents: 3174 diff changeset	1225 assert(attachment.GetContentType() == content);
574890d14c92 new metrics: orthanc_store_dicom_duration_ms, orthanc_storage_[create\|read\|remove]_duration_ms Sebastien Jodogne <s.jodogne@gmail.com> parents: 3174 diff changeset	1226
1550 2c7d5eb588e6 fix Sebastien Jodogne <s.jodogne@gmail.com> parents: 1549 diff changeset	1227 {
5184 dd085f7e7e71 cleaning new constructors of StorageAccessor Sebastien Jodogne <s.jodogne@gmail.com> parents: 5183 diff changeset	1228 std::unique_ptr<StorageAccessor> accessor;
dd085f7e7e71 cleaning new constructors of StorageAccessor Sebastien Jodogne <s.jodogne@gmail.com> parents: 5183 diff changeset	1229
dd085f7e7e71 cleaning new constructors of StorageAccessor Sebastien Jodogne <s.jodogne@gmail.com> parents: 5183 diff changeset	1230 if (skipCache)
5048 22966345eaba skip StorageCache when verifying md5 or when re-compressing attachments Alain Mazy <am@osimis.io> parents: 5044 diff changeset	1231 {
5184 dd085f7e7e71 cleaning new constructors of StorageAccessor Sebastien Jodogne <s.jodogne@gmail.com> parents: 5183 diff changeset	1232 accessor.reset(new StorageAccessor(area_, GetMetricsRegistry()));
5048 22966345eaba skip StorageCache when verifying md5 or when re-compressing attachments Alain Mazy <am@osimis.io> parents: 5044 diff changeset	1233 }
5184 dd085f7e7e71 cleaning new constructors of StorageAccessor Sebastien Jodogne <s.jodogne@gmail.com> parents: 5183 diff changeset	1234 else
dd085f7e7e71 cleaning new constructors of StorageAccessor Sebastien Jodogne <s.jodogne@gmail.com> parents: 5183 diff changeset	1235 {
dd085f7e7e71 cleaning new constructors of StorageAccessor Sebastien Jodogne <s.jodogne@gmail.com> parents: 5183 diff changeset	1236 accessor.reset(new StorageAccessor(area_, storageCache_, GetMetricsRegistry()));
dd085f7e7e71 cleaning new constructors of StorageAccessor Sebastien Jodogne <s.jodogne@gmail.com> parents: 5183 diff changeset	1237 }
4509 98b7b9d21d83 removed ServerContext::ReadAttachment() Sebastien Jodogne <s.jodogne@gmail.com> parents: 4508 diff changeset	1238
98b7b9d21d83 removed ServerContext::ReadAttachment() Sebastien Jodogne <s.jodogne@gmail.com> parents: 4508 diff changeset	1239 if (uncompressIfNeeded)
98b7b9d21d83 removed ServerContext::ReadAttachment() Sebastien Jodogne <s.jodogne@gmail.com> parents: 4508 diff changeset	1240 {
5184 dd085f7e7e71 cleaning new constructors of StorageAccessor Sebastien Jodogne <s.jodogne@gmail.com> parents: 5183 diff changeset	1241 accessor->Read(result, attachment);
4509 98b7b9d21d83 removed ServerContext::ReadAttachment() Sebastien Jodogne <s.jodogne@gmail.com> parents: 4508 diff changeset	1242 }
98b7b9d21d83 removed ServerContext::ReadAttachment() Sebastien Jodogne <s.jodogne@gmail.com> parents: 4508 diff changeset	1243 else
98b7b9d21d83 removed ServerContext::ReadAttachment() Sebastien Jodogne <s.jodogne@gmail.com> parents: 4508 diff changeset	1244 {
98b7b9d21d83 removed ServerContext::ReadAttachment() Sebastien Jodogne <s.jodogne@gmail.com> parents: 4508 diff changeset	1245 // Do not uncompress the content of the storage area, return the
98b7b9d21d83 removed ServerContext::ReadAttachment() Sebastien Jodogne <s.jodogne@gmail.com> parents: 4508 diff changeset	1246 // raw data
5184 dd085f7e7e71 cleaning new constructors of StorageAccessor Sebastien Jodogne <s.jodogne@gmail.com> parents: 5183 diff changeset	1247 accessor->ReadRaw(result, attachment);
4509 98b7b9d21d83 removed ServerContext::ReadAttachment() Sebastien Jodogne <s.jodogne@gmail.com> parents: 4508 diff changeset	1248 }
1550 2c7d5eb588e6 fix Sebastien Jodogne <s.jodogne@gmail.com> parents: 1549 diff changeset	1249 }
227 209ca3f6db62 dicom-scu from rest Sebastien Jodogne <s.jodogne@gmail.com> parents: 226 diff changeset	1250 }
285 4031f73fe0e4 access to the raw dicom tags Sebastien Jodogne <s.jodogne@gmail.com> parents: 269 diff changeset	1251
4031f73fe0e4 access to the raw dicom tags Sebastien Jodogne <s.jodogne@gmail.com> parents: 269 diff changeset	1252
4457 789676a8c96a Refactoring and improvements to the cache of DICOM files in ServerContext Sebastien Jodogne <s.jodogne@gmail.com> parents: 4437 diff changeset	1253 ServerContext::DicomCacheLocker::DicomCacheLocker(ServerContext& context,
789676a8c96a Refactoring and improvements to the cache of DICOM files in ServerContext Sebastien Jodogne <s.jodogne@gmail.com> parents: 4437 diff changeset	1254 const std::string& instancePublicId) :
789676a8c96a Refactoring and improvements to the cache of DICOM files in ServerContext Sebastien Jodogne <s.jodogne@gmail.com> parents: 4437 diff changeset	1255 context_(context),
789676a8c96a Refactoring and improvements to the cache of DICOM files in ServerContext Sebastien Jodogne <s.jodogne@gmail.com> parents: 4437 diff changeset	1256 instancePublicId_(instancePublicId)
285 4031f73fe0e4 access to the raw dicom tags Sebastien Jodogne <s.jodogne@gmail.com> parents: 269 diff changeset	1257 {
4457 789676a8c96a Refactoring and improvements to the cache of DICOM files in ServerContext Sebastien Jodogne <s.jodogne@gmail.com> parents: 4437 diff changeset	1258 accessor_.reset(new ParsedDicomCache::Accessor(context_.dicomCache_, instancePublicId));
789676a8c96a Refactoring and improvements to the cache of DICOM files in ServerContext Sebastien Jodogne <s.jodogne@gmail.com> parents: 4437 diff changeset	1259
789676a8c96a Refactoring and improvements to the cache of DICOM files in ServerContext Sebastien Jodogne <s.jodogne@gmail.com> parents: 4437 diff changeset	1260 if (!accessor_->IsValid())
789676a8c96a Refactoring and improvements to the cache of DICOM files in ServerContext Sebastien Jodogne <s.jodogne@gmail.com> parents: 4437 diff changeset	1261 {
789676a8c96a Refactoring and improvements to the cache of DICOM files in ServerContext Sebastien Jodogne <s.jodogne@gmail.com> parents: 4437 diff changeset	1262 accessor_.reset(NULL);
285 4031f73fe0e4 access to the raw dicom tags Sebastien Jodogne <s.jodogne@gmail.com> parents: 269 diff changeset	1263
4457 789676a8c96a Refactoring and improvements to the cache of DICOM files in ServerContext Sebastien Jodogne <s.jodogne@gmail.com> parents: 4437 diff changeset	1264 // Throttle to avoid loading several large DICOM files simultaneously
789676a8c96a Refactoring and improvements to the cache of DICOM files in ServerContext Sebastien Jodogne <s.jodogne@gmail.com> parents: 4437 diff changeset	1265 largeDicomLocker_.reset(new Semaphore::Locker(context.largeDicomThrottler_));
789676a8c96a Refactoring and improvements to the cache of DICOM files in ServerContext Sebastien Jodogne <s.jodogne@gmail.com> parents: 4437 diff changeset	1266
789676a8c96a Refactoring and improvements to the cache of DICOM files in ServerContext Sebastien Jodogne <s.jodogne@gmail.com> parents: 4437 diff changeset	1267 std::string content;
789676a8c96a Refactoring and improvements to the cache of DICOM files in ServerContext Sebastien Jodogne <s.jodogne@gmail.com> parents: 4437 diff changeset	1268 context_.ReadDicom(content, instancePublicId);
789676a8c96a Refactoring and improvements to the cache of DICOM files in ServerContext Sebastien Jodogne <s.jodogne@gmail.com> parents: 4437 diff changeset	1269
789676a8c96a Refactoring and improvements to the cache of DICOM files in ServerContext Sebastien Jodogne <s.jodogne@gmail.com> parents: 4437 diff changeset	1270 // Release the throttle if loading "small" DICOM files (under
789676a8c96a Refactoring and improvements to the cache of DICOM files in ServerContext Sebastien Jodogne <s.jodogne@gmail.com> parents: 4437 diff changeset	1271 // 50MB, which is an arbitrary value)
789676a8c96a Refactoring and improvements to the cache of DICOM files in ServerContext Sebastien Jodogne <s.jodogne@gmail.com> parents: 4437 diff changeset	1272 if (content.size() < 50 * 1024 * 1024)
789676a8c96a Refactoring and improvements to the cache of DICOM files in ServerContext Sebastien Jodogne <s.jodogne@gmail.com> parents: 4437 diff changeset	1273 {
789676a8c96a Refactoring and improvements to the cache of DICOM files in ServerContext Sebastien Jodogne <s.jodogne@gmail.com> parents: 4437 diff changeset	1274 largeDicomLocker_.reset(NULL);
789676a8c96a Refactoring and improvements to the cache of DICOM files in ServerContext Sebastien Jodogne <s.jodogne@gmail.com> parents: 4437 diff changeset	1275 }
789676a8c96a Refactoring and improvements to the cache of DICOM files in ServerContext Sebastien Jodogne <s.jodogne@gmail.com> parents: 4437 diff changeset	1276
789676a8c96a Refactoring and improvements to the cache of DICOM files in ServerContext Sebastien Jodogne <s.jodogne@gmail.com> parents: 4437 diff changeset	1277 dicom_.reset(new ParsedDicomFile(content));
789676a8c96a Refactoring and improvements to the cache of DICOM files in ServerContext Sebastien Jodogne <s.jodogne@gmail.com> parents: 4437 diff changeset	1278 dicomSize_ = content.size();
789676a8c96a Refactoring and improvements to the cache of DICOM files in ServerContext Sebastien Jodogne <s.jodogne@gmail.com> parents: 4437 diff changeset	1279 }
789676a8c96a Refactoring and improvements to the cache of DICOM files in ServerContext Sebastien Jodogne <s.jodogne@gmail.com> parents: 4437 diff changeset	1280
789676a8c96a Refactoring and improvements to the cache of DICOM files in ServerContext Sebastien Jodogne <s.jodogne@gmail.com> parents: 4437 diff changeset	1281 assert(accessor_.get() != NULL \|\|
789676a8c96a Refactoring and improvements to the cache of DICOM files in ServerContext Sebastien Jodogne <s.jodogne@gmail.com> parents: 4437 diff changeset	1282 dicom_.get() != NULL);
778 aebf0071020e refactoring of the mutex for the dicom cache Sebastien Jodogne <s.jodogne@gmail.com> parents: 774 diff changeset	1283 }
aebf0071020e refactoring of the mutex for the dicom cache Sebastien Jodogne <s.jodogne@gmail.com> parents: 774 diff changeset	1284
aebf0071020e refactoring of the mutex for the dicom cache Sebastien Jodogne <s.jodogne@gmail.com> parents: 774 diff changeset	1285
aebf0071020e refactoring of the mutex for the dicom cache Sebastien Jodogne <s.jodogne@gmail.com> parents: 774 diff changeset	1286 ServerContext::DicomCacheLocker::~DicomCacheLocker()
aebf0071020e refactoring of the mutex for the dicom cache Sebastien Jodogne <s.jodogne@gmail.com> parents: 774 diff changeset	1287 {
4457 789676a8c96a Refactoring and improvements to the cache of DICOM files in ServerContext Sebastien Jodogne <s.jodogne@gmail.com> parents: 4437 diff changeset	1288 if (dicom_.get() != NULL)
789676a8c96a Refactoring and improvements to the cache of DICOM files in ServerContext Sebastien Jodogne <s.jodogne@gmail.com> parents: 4437 diff changeset	1289 {
789676a8c96a Refactoring and improvements to the cache of DICOM files in ServerContext Sebastien Jodogne <s.jodogne@gmail.com> parents: 4437 diff changeset	1290 try
789676a8c96a Refactoring and improvements to the cache of DICOM files in ServerContext Sebastien Jodogne <s.jodogne@gmail.com> parents: 4437 diff changeset	1291 {
789676a8c96a Refactoring and improvements to the cache of DICOM files in ServerContext Sebastien Jodogne <s.jodogne@gmail.com> parents: 4437 diff changeset	1292 context_.dicomCache_.Acquire(instancePublicId_, dicom_.release(), dicomSize_);
789676a8c96a Refactoring and improvements to the cache of DICOM files in ServerContext Sebastien Jodogne <s.jodogne@gmail.com> parents: 4437 diff changeset	1293 context_.PublishDicomCacheMetrics();
789676a8c96a Refactoring and improvements to the cache of DICOM files in ServerContext Sebastien Jodogne <s.jodogne@gmail.com> parents: 4437 diff changeset	1294 }
789676a8c96a Refactoring and improvements to the cache of DICOM files in ServerContext Sebastien Jodogne <s.jodogne@gmail.com> parents: 4437 diff changeset	1295 catch (OrthancException&)
789676a8c96a Refactoring and improvements to the cache of DICOM files in ServerContext Sebastien Jodogne <s.jodogne@gmail.com> parents: 4437 diff changeset	1296 {
789676a8c96a Refactoring and improvements to the cache of DICOM files in ServerContext Sebastien Jodogne <s.jodogne@gmail.com> parents: 4437 diff changeset	1297 }
789676a8c96a Refactoring and improvements to the cache of DICOM files in ServerContext Sebastien Jodogne <s.jodogne@gmail.com> parents: 4437 diff changeset	1298 }
285 4031f73fe0e4 access to the raw dicom tags Sebastien Jodogne <s.jodogne@gmail.com> parents: 269 diff changeset	1299 }
304 4eea080e6e7a refactoring Sebastien Jodogne <s.jodogne@gmail.com> parents: 291 diff changeset	1300
4eea080e6e7a refactoring Sebastien Jodogne <s.jodogne@gmail.com> parents: 291 diff changeset	1301
4457 789676a8c96a Refactoring and improvements to the cache of DICOM files in ServerContext Sebastien Jodogne <s.jodogne@gmail.com> parents: 4437 diff changeset	1302 ParsedDicomFile& ServerContext::DicomCacheLocker::GetDicom() const
789676a8c96a Refactoring and improvements to the cache of DICOM files in ServerContext Sebastien Jodogne <s.jodogne@gmail.com> parents: 4437 diff changeset	1303 {
789676a8c96a Refactoring and improvements to the cache of DICOM files in ServerContext Sebastien Jodogne <s.jodogne@gmail.com> parents: 4437 diff changeset	1304 if (dicom_.get() != NULL)
789676a8c96a Refactoring and improvements to the cache of DICOM files in ServerContext Sebastien Jodogne <s.jodogne@gmail.com> parents: 4437 diff changeset	1305 {
789676a8c96a Refactoring and improvements to the cache of DICOM files in ServerContext Sebastien Jodogne <s.jodogne@gmail.com> parents: 4437 diff changeset	1306 return *dicom_;
789676a8c96a Refactoring and improvements to the cache of DICOM files in ServerContext Sebastien Jodogne <s.jodogne@gmail.com> parents: 4437 diff changeset	1307 }
789676a8c96a Refactoring and improvements to the cache of DICOM files in ServerContext Sebastien Jodogne <s.jodogne@gmail.com> parents: 4437 diff changeset	1308 else
789676a8c96a Refactoring and improvements to the cache of DICOM files in ServerContext Sebastien Jodogne <s.jodogne@gmail.com> parents: 4437 diff changeset	1309 {
789676a8c96a Refactoring and improvements to the cache of DICOM files in ServerContext Sebastien Jodogne <s.jodogne@gmail.com> parents: 4437 diff changeset	1310 assert(accessor_.get() != NULL);
789676a8c96a Refactoring and improvements to the cache of DICOM files in ServerContext Sebastien Jodogne <s.jodogne@gmail.com> parents: 4437 diff changeset	1311 return accessor_->GetDicom();
789676a8c96a Refactoring and improvements to the cache of DICOM files in ServerContext Sebastien Jodogne <s.jodogne@gmail.com> parents: 4437 diff changeset	1312 }
789676a8c96a Refactoring and improvements to the cache of DICOM files in ServerContext Sebastien Jodogne <s.jodogne@gmail.com> parents: 4437 diff changeset	1313 }
789676a8c96a Refactoring and improvements to the cache of DICOM files in ServerContext Sebastien Jodogne <s.jodogne@gmail.com> parents: 4437 diff changeset	1314
789676a8c96a Refactoring and improvements to the cache of DICOM files in ServerContext Sebastien Jodogne <s.jodogne@gmail.com> parents: 4437 diff changeset	1315
695 c59bc408fb10 parameter to disable the computation of the MD5 Sebastien Jodogne <s.jodogne@gmail.com> parents: 689 diff changeset	1316 void ServerContext::SetStoreMD5ForAttachments(bool storeMD5)
c59bc408fb10 parameter to disable the computation of the MD5 Sebastien Jodogne <s.jodogne@gmail.com> parents: 689 diff changeset	1317 {
c59bc408fb10 parameter to disable the computation of the MD5 Sebastien Jodogne <s.jodogne@gmail.com> parents: 689 diff changeset	1318 LOG(INFO) << "Storing MD5 for attachments: " << (storeMD5 ? "yes" : "no");
1549 e5e975e9b738 refactoring and simplification of StorageAccessor Sebastien Jodogne <s.jodogne@gmail.com> parents: 1548 diff changeset	1319 storeMD5_ = storeMD5;
695 c59bc408fb10 parameter to disable the computation of the MD5 Sebastien Jodogne <s.jodogne@gmail.com> parents: 689 diff changeset	1320 }
c59bc408fb10 parameter to disable the computation of the MD5 Sebastien Jodogne <s.jodogne@gmail.com> parents: 689 diff changeset	1321
699 2929e17f8447 add attachments to resources Sebastien Jodogne <s.jodogne@gmail.com> parents: 697 diff changeset	1322
4627 f7d5372b59b3 handling revisions of attachments Sebastien Jodogne <s.jodogne@gmail.com> parents: 4623 diff changeset	1323 bool ServerContext::AddAttachment(int64_t& newRevision,
f7d5372b59b3 handling revisions of attachments Sebastien Jodogne <s.jodogne@gmail.com> parents: 4623 diff changeset	1324 const std::string& resourceId,
699 2929e17f8447 add attachments to resources Sebastien Jodogne <s.jodogne@gmail.com> parents: 697 diff changeset	1325 FileContentType attachmentType,
2929e17f8447 add attachments to resources Sebastien Jodogne <s.jodogne@gmail.com> parents: 697 diff changeset	1326 const void* data,
4627 f7d5372b59b3 handling revisions of attachments Sebastien Jodogne <s.jodogne@gmail.com> parents: 4623 diff changeset	1327 size_t size,
f7d5372b59b3 handling revisions of attachments Sebastien Jodogne <s.jodogne@gmail.com> parents: 4623 diff changeset	1328 bool hasOldRevision,
4640 66109d24d26e "ETag" headers for metadata and attachments now allow strong comparison (MD5 is included) Sebastien Jodogne <s.jodogne@gmail.com> parents: 4629 diff changeset	1329 int64_t oldRevision,
66109d24d26e "ETag" headers for metadata and attachments now allow strong comparison (MD5 is included) Sebastien Jodogne <s.jodogne@gmail.com> parents: 4629 diff changeset	1330 const std::string& oldMD5)
699 2929e17f8447 add attachments to resources Sebastien Jodogne <s.jodogne@gmail.com> parents: 697 diff changeset	1331 {
2929e17f8447 add attachments to resources Sebastien Jodogne <s.jodogne@gmail.com> parents: 697 diff changeset	1332 LOG(INFO) << "Adding attachment " << EnumerationToString(attachmentType) << " to resource " << resourceId;
2929e17f8447 add attachments to resources Sebastien Jodogne <s.jodogne@gmail.com> parents: 697 diff changeset	1333
1549 e5e975e9b738 refactoring and simplification of StorageAccessor Sebastien Jodogne <s.jodogne@gmail.com> parents: 1548 diff changeset	1334 // TODO Should we use "gzip" instead?
e5e975e9b738 refactoring and simplification of StorageAccessor Sebastien Jodogne <s.jodogne@gmail.com> parents: 1548 diff changeset	1335 CompressionType compression = (compressionEnabled_ ? CompressionType_ZlibWithSize : CompressionType_None);
699 2929e17f8447 add attachments to resources Sebastien Jodogne <s.jodogne@gmail.com> parents: 697 diff changeset	1336
5184 dd085f7e7e71 cleaning new constructors of StorageAccessor Sebastien Jodogne <s.jodogne@gmail.com> parents: 5183 diff changeset	1337 StorageAccessor accessor(area_, storageCache_, GetMetricsRegistry());
1549 e5e975e9b738 refactoring and simplification of StorageAccessor Sebastien Jodogne <s.jodogne@gmail.com> parents: 1548 diff changeset	1338 FileInfo attachment = accessor.Write(data, size, attachmentType, compression, storeMD5_);
699 2929e17f8447 add attachments to resources Sebastien Jodogne <s.jodogne@gmail.com> parents: 697 diff changeset	1339
4752 2f35e6b765e5 Fix orphaned attachments if bad revision number is provided Sebastien Jodogne <s.jodogne@gmail.com> parents: 4694 diff changeset	1340 try
699 2929e17f8447 add attachments to resources Sebastien Jodogne <s.jodogne@gmail.com> parents: 697 diff changeset	1341 {
4752 2f35e6b765e5 Fix orphaned attachments if bad revision number is provided Sebastien Jodogne <s.jodogne@gmail.com> parents: 4694 diff changeset	1342 StoreStatus status = index_.AddAttachment(
2f35e6b765e5 Fix orphaned attachments if bad revision number is provided Sebastien Jodogne <s.jodogne@gmail.com> parents: 4694 diff changeset	1343 newRevision, attachment, resourceId, hasOldRevision, oldRevision, oldMD5);
2f35e6b765e5 Fix orphaned attachments if bad revision number is provided Sebastien Jodogne <s.jodogne@gmail.com> parents: 4694 diff changeset	1344 if (status != StoreStatus_Success)
2f35e6b765e5 Fix orphaned attachments if bad revision number is provided Sebastien Jodogne <s.jodogne@gmail.com> parents: 4694 diff changeset	1345 {
2f35e6b765e5 Fix orphaned attachments if bad revision number is provided Sebastien Jodogne <s.jodogne@gmail.com> parents: 4694 diff changeset	1346 accessor.Remove(attachment);
2f35e6b765e5 Fix orphaned attachments if bad revision number is provided Sebastien Jodogne <s.jodogne@gmail.com> parents: 4694 diff changeset	1347 return false;
2f35e6b765e5 Fix orphaned attachments if bad revision number is provided Sebastien Jodogne <s.jodogne@gmail.com> parents: 4694 diff changeset	1348 }
2f35e6b765e5 Fix orphaned attachments if bad revision number is provided Sebastien Jodogne <s.jodogne@gmail.com> parents: 4694 diff changeset	1349 else
2f35e6b765e5 Fix orphaned attachments if bad revision number is provided Sebastien Jodogne <s.jodogne@gmail.com> parents: 4694 diff changeset	1350 {
2f35e6b765e5 Fix orphaned attachments if bad revision number is provided Sebastien Jodogne <s.jodogne@gmail.com> parents: 4694 diff changeset	1351 return true;
2f35e6b765e5 Fix orphaned attachments if bad revision number is provided Sebastien Jodogne <s.jodogne@gmail.com> parents: 4694 diff changeset	1352 }
2f35e6b765e5 Fix orphaned attachments if bad revision number is provided Sebastien Jodogne <s.jodogne@gmail.com> parents: 4694 diff changeset	1353 }
2f35e6b765e5 Fix orphaned attachments if bad revision number is provided Sebastien Jodogne <s.jodogne@gmail.com> parents: 4694 diff changeset	1354 catch (OrthancException&)
2f35e6b765e5 Fix orphaned attachments if bad revision number is provided Sebastien Jodogne <s.jodogne@gmail.com> parents: 4694 diff changeset	1355 {
2f35e6b765e5 Fix orphaned attachments if bad revision number is provided Sebastien Jodogne <s.jodogne@gmail.com> parents: 4694 diff changeset	1356 // Fixed in Orthanc 1.9.6
1549 e5e975e9b738 refactoring and simplification of StorageAccessor Sebastien Jodogne <s.jodogne@gmail.com> parents: 1548 diff changeset	1357 accessor.Remove(attachment);
4752 2f35e6b765e5 Fix orphaned attachments if bad revision number is provided Sebastien Jodogne <s.jodogne@gmail.com> parents: 4694 diff changeset	1358 throw;
699 2929e17f8447 add attachments to resources Sebastien Jodogne <s.jodogne@gmail.com> parents: 697 diff changeset	1359 }
2929e17f8447 add attachments to resources Sebastien Jodogne <s.jodogne@gmail.com> parents: 697 diff changeset	1360 }
1145 0479d02c6778 Plugins can retrieve the path to Orthanc and to its configuration file Sebastien Jodogne <s.jodogne@gmail.com> parents: 1134 diff changeset	1361
0479d02c6778 Plugins can retrieve the path to Orthanc and to its configuration file Sebastien Jodogne <s.jodogne@gmail.com> parents: 1134 diff changeset	1362
4694 da1edb7d6332 "/tools/bulk-delete" to delete a group of multiple, unrelated resources at once Sebastien Jodogne <s.jodogne@gmail.com> parents: 4677 diff changeset	1363 bool ServerContext::DeleteResource(Json::Value& remainingAncestor,
1145 0479d02c6778 Plugins can retrieve the path to Orthanc and to its configuration file Sebastien Jodogne <s.jodogne@gmail.com> parents: 1134 diff changeset	1364 const std::string& uuid,
0479d02c6778 Plugins can retrieve the path to Orthanc and to its configuration file Sebastien Jodogne <s.jodogne@gmail.com> parents: 1134 diff changeset	1365 ResourceType expectedType)
0479d02c6778 Plugins can retrieve the path to Orthanc and to its configuration file Sebastien Jodogne <s.jodogne@gmail.com> parents: 1134 diff changeset	1366 {
2507 99116ed6f38c invalidate DicomCache when deleting instance amazy parents: 2447 diff changeset	1367 if (expectedType == ResourceType_Instance)
99116ed6f38c invalidate DicomCache when deleting instance amazy parents: 2447 diff changeset	1368 {
99116ed6f38c invalidate DicomCache when deleting instance amazy parents: 2447 diff changeset	1369 // remove the file from the DicomCache
99116ed6f38c invalidate DicomCache when deleting instance amazy parents: 2447 diff changeset	1370 dicomCache_.Invalidate(uuid);
4457 789676a8c96a Refactoring and improvements to the cache of DICOM files in ServerContext Sebastien Jodogne <s.jodogne@gmail.com> parents: 4437 diff changeset	1371 PublishDicomCacheMetrics();
2507 99116ed6f38c invalidate DicomCache when deleting instance amazy parents: 2447 diff changeset	1372 }
99116ed6f38c invalidate DicomCache when deleting instance amazy parents: 2447 diff changeset	1373
4694 da1edb7d6332 "/tools/bulk-delete" to delete a group of multiple, unrelated resources at once Sebastien Jodogne <s.jodogne@gmail.com> parents: 4677 diff changeset	1374 return index_.DeleteResource(remainingAncestor, uuid, expectedType);
1145 0479d02c6778 Plugins can retrieve the path to Orthanc and to its configuration file Sebastien Jodogne <s.jodogne@gmail.com> parents: 1134 diff changeset	1375 }
1189 6b9b02a16e99 NewChildInstance change type Sebastien Jodogne <s.jodogne@gmail.com> parents: 1165 diff changeset	1376
6b9b02a16e99 NewChildInstance change type Sebastien Jodogne <s.jodogne@gmail.com> parents: 1165 diff changeset	1377
1198 1169528a9a5f refactoring Sebastien Jodogne <s.jodogne@gmail.com> parents: 1189 diff changeset	1378 void ServerContext::SignalChange(const ServerIndexChange& change)
1189 6b9b02a16e99 NewChildInstance change type Sebastien Jodogne <s.jodogne@gmail.com> parents: 1165 diff changeset	1379 {
4457 789676a8c96a Refactoring and improvements to the cache of DICOM files in ServerContext Sebastien Jodogne <s.jodogne@gmail.com> parents: 4437 diff changeset	1380 if (change.GetResourceType() == ResourceType_Instance &&
789676a8c96a Refactoring and improvements to the cache of DICOM files in ServerContext Sebastien Jodogne <s.jodogne@gmail.com> parents: 4437 diff changeset	1381 change.GetChangeType() == ChangeType_Deleted)
789676a8c96a Refactoring and improvements to the cache of DICOM files in ServerContext Sebastien Jodogne <s.jodogne@gmail.com> parents: 4437 diff changeset	1382 {
789676a8c96a Refactoring and improvements to the cache of DICOM files in ServerContext Sebastien Jodogne <s.jodogne@gmail.com> parents: 4437 diff changeset	1383 dicomCache_.Invalidate(change.GetPublicId());
789676a8c96a Refactoring and improvements to the cache of DICOM files in ServerContext Sebastien Jodogne <s.jodogne@gmail.com> parents: 4437 diff changeset	1384 PublishDicomCacheMetrics();
789676a8c96a Refactoring and improvements to the cache of DICOM files in ServerContext Sebastien Jodogne <s.jodogne@gmail.com> parents: 4437 diff changeset	1385 }
789676a8c96a Refactoring and improvements to the cache of DICOM files in ServerContext Sebastien Jodogne <s.jodogne@gmail.com> parents: 4437 diff changeset	1386
1436 0a3e3be59094 uncoupling of SignalChange for Lua scripts Sebastien Jodogne <s.jodogne@gmail.com> parents: 1434 diff changeset	1387 pendingChanges_.Enqueue(change.Clone());
1189 6b9b02a16e99 NewChildInstance change type Sebastien Jodogne <s.jodogne@gmail.com> parents: 1165 diff changeset	1388 }
1232 f1c01451a8ee Introspection of plugins, Plugins can extend Orthanc Explorer with custom JavaScript Sebastien Jodogne <s.jodogne@gmail.com> parents: 1198 diff changeset	1389
f1c01451a8ee Introspection of plugins, Plugins can extend Orthanc Explorer with custom JavaScript Sebastien Jodogne <s.jodogne@gmail.com> parents: 1198 diff changeset	1390
2136 dd609a99d39a uniformization of the macro naming Sebastien Jodogne <s.jodogne@gmail.com> parents: 2135 diff changeset	1391 #if ORTHANC_ENABLE_PLUGINS == 1
1434 f9cd40166269 refactoring of OrthancPlugins, improvement in ServeFolders Sebastien Jodogne <s.jodogne@gmail.com> parents: 1433 diff changeset	1392 void ServerContext::SetPlugins(OrthancPlugins& plugins)
1232 f1c01451a8ee Introspection of plugins, Plugins can extend Orthanc Explorer with custom JavaScript Sebastien Jodogne <s.jodogne@gmail.com> parents: 1198 diff changeset	1393 {
3947 cf6eb4fc6841 fix issue 179: use a shared mutex to avoid deadlock in python plugins Alain Mazy <alain@mazy.be> parents: 3945 diff changeset	1394 boost::unique_lock<boost::shared_mutex> lock(listenersMutex_);
1459 040d58493998 security Sebastien Jodogne <s.jodogne@gmail.com> parents: 1456 diff changeset	1395
1434 f9cd40166269 refactoring of OrthancPlugins, improvement in ServeFolders Sebastien Jodogne <s.jodogne@gmail.com> parents: 1433 diff changeset	1396 plugins_ = &plugins;
f9cd40166269 refactoring of OrthancPlugins, improvement in ServeFolders Sebastien Jodogne <s.jodogne@gmail.com> parents: 1433 diff changeset	1397
f9cd40166269 refactoring of OrthancPlugins, improvement in ServeFolders Sebastien Jodogne <s.jodogne@gmail.com> parents: 1433 diff changeset	1398 // TODO REFACTOR THIS
f9cd40166269 refactoring of OrthancPlugins, improvement in ServeFolders Sebastien Jodogne <s.jodogne@gmail.com> parents: 1433 diff changeset	1399 listeners_.clear();
2738 3a55b77339ff fix deadlock in Lua scripts Sebastien Jodogne <s.jodogne@gmail.com> parents: 2716 diff changeset	1400 listeners_.push_back(ServerListener(luaListener_, "Lua"));
1434 f9cd40166269 refactoring of OrthancPlugins, improvement in ServeFolders Sebastien Jodogne <s.jodogne@gmail.com> parents: 1433 diff changeset	1401 listeners_.push_back(ServerListener(plugins, "plugin"));
1232 f1c01451a8ee Introspection of plugins, Plugins can extend Orthanc Explorer with custom JavaScript Sebastien Jodogne <s.jodogne@gmail.com> parents: 1198 diff changeset	1402 }
f1c01451a8ee Introspection of plugins, Plugins can extend Orthanc Explorer with custom JavaScript Sebastien Jodogne <s.jodogne@gmail.com> parents: 1198 diff changeset	1403
f1c01451a8ee Introspection of plugins, Plugins can extend Orthanc Explorer with custom JavaScript Sebastien Jodogne <s.jodogne@gmail.com> parents: 1198 diff changeset	1404
1434 f9cd40166269 refactoring of OrthancPlugins, improvement in ServeFolders Sebastien Jodogne <s.jodogne@gmail.com> parents: 1433 diff changeset	1405 void ServerContext::ResetPlugins()
1232 f1c01451a8ee Introspection of plugins, Plugins can extend Orthanc Explorer with custom JavaScript Sebastien Jodogne <s.jodogne@gmail.com> parents: 1198 diff changeset	1406 {
3947 cf6eb4fc6841 fix issue 179: use a shared mutex to avoid deadlock in python plugins Alain Mazy <alain@mazy.be> parents: 3945 diff changeset	1407 boost::unique_lock<boost::shared_mutex> lock(listenersMutex_);
1459 040d58493998 security Sebastien Jodogne <s.jodogne@gmail.com> parents: 1456 diff changeset	1408
1434 f9cd40166269 refactoring of OrthancPlugins, improvement in ServeFolders Sebastien Jodogne <s.jodogne@gmail.com> parents: 1433 diff changeset	1409 plugins_ = NULL;
f9cd40166269 refactoring of OrthancPlugins, improvement in ServeFolders Sebastien Jodogne <s.jodogne@gmail.com> parents: 1433 diff changeset	1410
f9cd40166269 refactoring of OrthancPlugins, improvement in ServeFolders Sebastien Jodogne <s.jodogne@gmail.com> parents: 1433 diff changeset	1411 // TODO REFACTOR THIS
f9cd40166269 refactoring of OrthancPlugins, improvement in ServeFolders Sebastien Jodogne <s.jodogne@gmail.com> parents: 1433 diff changeset	1412 listeners_.clear();
2738 3a55b77339ff fix deadlock in Lua scripts Sebastien Jodogne <s.jodogne@gmail.com> parents: 2716 diff changeset	1413 listeners_.push_back(ServerListener(luaListener_, "Lua"));
1232 f1c01451a8ee Introspection of plugins, Plugins can extend Orthanc Explorer with custom JavaScript Sebastien Jodogne <s.jodogne@gmail.com> parents: 1198 diff changeset	1414 }
f1c01451a8ee Introspection of plugins, Plugins can extend Orthanc Explorer with custom JavaScript Sebastien Jodogne <s.jodogne@gmail.com> parents: 1198 diff changeset	1415
f1c01451a8ee Introspection of plugins, Plugins can extend Orthanc Explorer with custom JavaScript Sebastien Jodogne <s.jodogne@gmail.com> parents: 1198 diff changeset	1416
1434 f9cd40166269 refactoring of OrthancPlugins, improvement in ServeFolders Sebastien Jodogne <s.jodogne@gmail.com> parents: 1433 diff changeset	1417 const OrthancPlugins& ServerContext::GetPlugins() const
1232 f1c01451a8ee Introspection of plugins, Plugins can extend Orthanc Explorer with custom JavaScript Sebastien Jodogne <s.jodogne@gmail.com> parents: 1198 diff changeset	1418 {
f1c01451a8ee Introspection of plugins, Plugins can extend Orthanc Explorer with custom JavaScript Sebastien Jodogne <s.jodogne@gmail.com> parents: 1198 diff changeset	1419 if (HasPlugins())
f1c01451a8ee Introspection of plugins, Plugins can extend Orthanc Explorer with custom JavaScript Sebastien Jodogne <s.jodogne@gmail.com> parents: 1198 diff changeset	1420 {
f1c01451a8ee Introspection of plugins, Plugins can extend Orthanc Explorer with custom JavaScript Sebastien Jodogne <s.jodogne@gmail.com> parents: 1198 diff changeset	1421 return *plugins_;
f1c01451a8ee Introspection of plugins, Plugins can extend Orthanc Explorer with custom JavaScript Sebastien Jodogne <s.jodogne@gmail.com> parents: 1198 diff changeset	1422 }
f1c01451a8ee Introspection of plugins, Plugins can extend Orthanc Explorer with custom JavaScript Sebastien Jodogne <s.jodogne@gmail.com> parents: 1198 diff changeset	1423 else
f1c01451a8ee Introspection of plugins, Plugins can extend Orthanc Explorer with custom JavaScript Sebastien Jodogne <s.jodogne@gmail.com> parents: 1198 diff changeset	1424 {
f1c01451a8ee Introspection of plugins, Plugins can extend Orthanc Explorer with custom JavaScript Sebastien Jodogne <s.jodogne@gmail.com> parents: 1198 diff changeset	1425 throw OrthancException(ErrorCode_InternalError);
f1c01451a8ee Introspection of plugins, Plugins can extend Orthanc Explorer with custom JavaScript Sebastien Jodogne <s.jodogne@gmail.com> parents: 1198 diff changeset	1426 }
f1c01451a8ee Introspection of plugins, Plugins can extend Orthanc Explorer with custom JavaScript Sebastien Jodogne <s.jodogne@gmail.com> parents: 1198 diff changeset	1427 }
1632 eb8fbcf008b5 fix build with plugins disabled Sebastien Jodogne <s.jodogne@gmail.com> parents: 1582 diff changeset	1428
1741 06addfcd1d4c OrthancStarted and OrthancStopped events in plugins Sebastien Jodogne <s.jodogne@gmail.com> parents: 1701 diff changeset	1429 OrthancPlugins& ServerContext::GetPlugins()
06addfcd1d4c OrthancStarted and OrthancStopped events in plugins Sebastien Jodogne <s.jodogne@gmail.com> parents: 1701 diff changeset	1430 {
06addfcd1d4c OrthancStarted and OrthancStopped events in plugins Sebastien Jodogne <s.jodogne@gmail.com> parents: 1701 diff changeset	1431 if (HasPlugins())
06addfcd1d4c OrthancStarted and OrthancStopped events in plugins Sebastien Jodogne <s.jodogne@gmail.com> parents: 1701 diff changeset	1432 {
06addfcd1d4c OrthancStarted and OrthancStopped events in plugins Sebastien Jodogne <s.jodogne@gmail.com> parents: 1701 diff changeset	1433 return *plugins_;
06addfcd1d4c OrthancStarted and OrthancStopped events in plugins Sebastien Jodogne <s.jodogne@gmail.com> parents: 1701 diff changeset	1434 }
06addfcd1d4c OrthancStarted and OrthancStopped events in plugins Sebastien Jodogne <s.jodogne@gmail.com> parents: 1701 diff changeset	1435 else
06addfcd1d4c OrthancStarted and OrthancStopped events in plugins Sebastien Jodogne <s.jodogne@gmail.com> parents: 1701 diff changeset	1436 {
06addfcd1d4c OrthancStarted and OrthancStopped events in plugins Sebastien Jodogne <s.jodogne@gmail.com> parents: 1701 diff changeset	1437 throw OrthancException(ErrorCode_InternalError);
06addfcd1d4c OrthancStarted and OrthancStopped events in plugins Sebastien Jodogne <s.jodogne@gmail.com> parents: 1701 diff changeset	1438 }
06addfcd1d4c OrthancStarted and OrthancStopped events in plugins Sebastien Jodogne <s.jodogne@gmail.com> parents: 1701 diff changeset	1439 }
06addfcd1d4c OrthancStarted and OrthancStopped events in plugins Sebastien Jodogne <s.jodogne@gmail.com> parents: 1701 diff changeset	1440
1632 eb8fbcf008b5 fix build with plugins disabled Sebastien Jodogne <s.jodogne@gmail.com> parents: 1582 diff changeset	1441 #endif
eb8fbcf008b5 fix build with plugins disabled Sebastien Jodogne <s.jodogne@gmail.com> parents: 1582 diff changeset	1442
eb8fbcf008b5 fix build with plugins disabled Sebastien Jodogne <s.jodogne@gmail.com> parents: 1582 diff changeset	1443
eb8fbcf008b5 fix build with plugins disabled Sebastien Jodogne <s.jodogne@gmail.com> parents: 1582 diff changeset	1444 bool ServerContext::HasPlugins() const
eb8fbcf008b5 fix build with plugins disabled Sebastien Jodogne <s.jodogne@gmail.com> parents: 1582 diff changeset	1445 {
2136 dd609a99d39a uniformization of the macro naming Sebastien Jodogne <s.jodogne@gmail.com> parents: 2135 diff changeset	1446 #if ORTHANC_ENABLE_PLUGINS == 1
1632 eb8fbcf008b5 fix build with plugins disabled Sebastien Jodogne <s.jodogne@gmail.com> parents: 1582 diff changeset	1447 return (plugins_ != NULL);
eb8fbcf008b5 fix build with plugins disabled Sebastien Jodogne <s.jodogne@gmail.com> parents: 1582 diff changeset	1448 #else
eb8fbcf008b5 fix build with plugins disabled Sebastien Jodogne <s.jodogne@gmail.com> parents: 1582 diff changeset	1449 return false;
eb8fbcf008b5 fix build with plugins disabled Sebastien Jodogne <s.jodogne@gmail.com> parents: 1582 diff changeset	1450 #endif
eb8fbcf008b5 fix build with plugins disabled Sebastien Jodogne <s.jodogne@gmail.com> parents: 1582 diff changeset	1451 }
1757 98abb8d7f905 ServerContext::Apply lookup Sebastien Jodogne <s.jodogne@gmail.com> parents: 1741 diff changeset	1452
98abb8d7f905 ServerContext::Apply lookup Sebastien Jodogne <s.jodogne@gmail.com> parents: 1741 diff changeset	1453
4978 2cfa50d8eb60 Speed-up handling of DicomModalitiesInStudy in C-Find and tools/find queries Alain Mazy <am@osimis.io> parents: 4977 diff changeset	1454 void ServerContext::Apply(ILookupVisitor& visitor,
2cfa50d8eb60 Speed-up handling of DicomModalitiesInStudy in C-Find and tools/find queries Alain Mazy <am@osimis.io> parents: 4977 diff changeset	1455 const DatabaseLookup& lookup,
2cfa50d8eb60 Speed-up handling of DicomModalitiesInStudy in C-Find and tools/find queries Alain Mazy <am@osimis.io> parents: 4977 diff changeset	1456 ResourceType queryLevel,
2cfa50d8eb60 Speed-up handling of DicomModalitiesInStudy in C-Find and tools/find queries Alain Mazy <am@osimis.io> parents: 4977 diff changeset	1457 size_t since,
2cfa50d8eb60 Speed-up handling of DicomModalitiesInStudy in C-Find and tools/find queries Alain Mazy <am@osimis.io> parents: 4977 diff changeset	1458 size_t limit)
4196 37310bb1cd30 Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find" Sebastien Jodogne <s.jodogne@gmail.com> parents: 4143 diff changeset	1459 {
3679 6358923d3ced C-FIND: forbid wildcard matching on some VRs, ignore main tags below the queried level Sebastien Jodogne <s.jodogne@gmail.com> parents: 3677 diff changeset	1460 unsigned int databaseLimit = (queryLevel == ResourceType_Instance ?
6358923d3ced C-FIND: forbid wildcard matching on some VRs, ignore main tags below the queried level Sebastien Jodogne <s.jodogne@gmail.com> parents: 3677 diff changeset	1461 limitFindInstances_ : limitFindResults_);
3015 abe49ca61cd5 On C-FIND, avoid accessing the storage area whenever possible Sebastien Jodogne <s.jodogne@gmail.com> parents: 3012 diff changeset	1462
1757 98abb8d7f905 ServerContext::Apply lookup Sebastien Jodogne <s.jodogne@gmail.com> parents: 1741 diff changeset	1463 std::vector<std::string> resources, instances;
4978 2cfa50d8eb60 Speed-up handling of DicomModalitiesInStudy in C-Find and tools/find queries Alain Mazy <am@osimis.io> parents: 4977 diff changeset	1464 const DicomTagConstraint* dicomModalitiesConstraint = NULL;
2cfa50d8eb60 Speed-up handling of DicomModalitiesInStudy in C-Find and tools/find queries Alain Mazy <am@osimis.io> parents: 4977 diff changeset	1465
2cfa50d8eb60 Speed-up handling of DicomModalitiesInStudy in C-Find and tools/find queries Alain Mazy <am@osimis.io> parents: 4977 diff changeset	1466 bool hasModalitiesInStudyLookup = (queryLevel == ResourceType_Study &&
2cfa50d8eb60 Speed-up handling of DicomModalitiesInStudy in C-Find and tools/find queries Alain Mazy <am@osimis.io> parents: 4977 diff changeset	1467 lookup.GetConstraint(dicomModalitiesConstraint, DICOM_TAG_MODALITIES_IN_STUDY) &&
2cfa50d8eb60 Speed-up handling of DicomModalitiesInStudy in C-Find and tools/find queries Alain Mazy <am@osimis.io> parents: 4977 diff changeset	1468 ((dicomModalitiesConstraint->GetConstraintType() == ConstraintType_Equal && !dicomModalitiesConstraint->GetValue().empty()) \|\|
2cfa50d8eb60 Speed-up handling of DicomModalitiesInStudy in C-Find and tools/find queries Alain Mazy <am@osimis.io> parents: 4977 diff changeset	1469 (dicomModalitiesConstraint->GetConstraintType() == ConstraintType_List && !dicomModalitiesConstraint->GetValues().empty())));
2cfa50d8eb60 Speed-up handling of DicomModalitiesInStudy in C-Find and tools/find queries Alain Mazy <am@osimis.io> parents: 4977 diff changeset	1470
2cfa50d8eb60 Speed-up handling of DicomModalitiesInStudy in C-Find and tools/find queries Alain Mazy <am@osimis.io> parents: 4977 diff changeset	1471 std::unique_ptr<DatabaseLookup> fastLookup(lookup.Clone());
2cfa50d8eb60 Speed-up handling of DicomModalitiesInStudy in C-Find and tools/find queries Alain Mazy <am@osimis.io> parents: 4977 diff changeset	1472
2cfa50d8eb60 Speed-up handling of DicomModalitiesInStudy in C-Find and tools/find queries Alain Mazy <am@osimis.io> parents: 4977 diff changeset	1473 if (hasModalitiesInStudyLookup)
2cfa50d8eb60 Speed-up handling of DicomModalitiesInStudy in C-Find and tools/find queries Alain Mazy <am@osimis.io> parents: 4977 diff changeset	1474 {
2cfa50d8eb60 Speed-up handling of DicomModalitiesInStudy in C-Find and tools/find queries Alain Mazy <am@osimis.io> parents: 4977 diff changeset	1475 fastLookup->RemoveConstraint(DICOM_TAG_MODALITIES_IN_STUDY);
2cfa50d8eb60 Speed-up handling of DicomModalitiesInStudy in C-Find and tools/find queries Alain Mazy <am@osimis.io> parents: 4977 diff changeset	1476 }
3015 abe49ca61cd5 On C-FIND, avoid accessing the storage area whenever possible Sebastien Jodogne <s.jodogne@gmail.com> parents: 3012 diff changeset	1477
3204 8792867b739a fix incorrect "too many results" Sebastien Jodogne <s.jodogne@gmail.com> parents: 3175 diff changeset	1478 {
5220 df39c7583a49 preparing virtual methods for labels Sebastien Jodogne <s.jodogne@gmail.com> parents: 5200 diff changeset	1479 const size_t lookupLimit = (databaseLimit == 0 ? 0 : databaseLimit + 1);
df39c7583a49 preparing virtual methods for labels Sebastien Jodogne <s.jodogne@gmail.com> parents: 5200 diff changeset	1480 GetIndex().ApplyLookupResources(resources, &instances, *fastLookup, queryLevel,
5248 a7d95f951f8a replaced "WithLabels" and "WithoutLabels", by "Labels" and "LabelsConstraint" Sebastien Jodogne <s.jodogne@gmail.com> parents: 5222 diff changeset	1481 lookup.GetLabels(), lookup.GetLabelsConstraint(), lookupLimit);
3204 8792867b739a fix incorrect "too many results" Sebastien Jodogne <s.jodogne@gmail.com> parents: 3175 diff changeset	1482 }
3025 039a9d262d64 preparing to speed up find in databases Sebastien Jodogne <s.jodogne@gmail.com> parents: 3021 diff changeset	1483
3033 5da6d1063d8f effectively replacing LookupResource by DatabaseLookup in searches Sebastien Jodogne <s.jodogne@gmail.com> parents: 3031 diff changeset	1484 bool complete = (databaseLimit == 0 \|\|
3204 8792867b739a fix incorrect "too many results" Sebastien Jodogne <s.jodogne@gmail.com> parents: 3175 diff changeset	1485 resources.size() <= databaseLimit);
1757 98abb8d7f905 ServerContext::Apply lookup Sebastien Jodogne <s.jodogne@gmail.com> parents: 1741 diff changeset	1486
3005 8265a6b56100 DicomMap::FromDicomAsJson Sebastien Jodogne <s.jodogne@gmail.com> parents: 3003 diff changeset	1487 LOG(INFO) << "Number of candidate resources after fast DB filtering on main DICOM tags: " << resources.size();
3003 5ae3ff2398e9 refactoring OrthancFindRequestHandler using LookupResource::IVisitor Sebastien Jodogne <s.jodogne@gmail.com> parents: 3001 diff changeset	1488
3679 6358923d3ced C-FIND: forbid wildcard matching on some VRs, ignore main tags below the queried level Sebastien Jodogne <s.jodogne@gmail.com> parents: 3677 diff changeset	1489 /**
6358923d3ced C-FIND: forbid wildcard matching on some VRs, ignore main tags below the queried level Sebastien Jodogne <s.jodogne@gmail.com> parents: 3677 diff changeset	1490 * "resources" contains the Orthanc ID of the resource at level
6358923d3ced C-FIND: forbid wildcard matching on some VRs, ignore main tags below the queried level Sebastien Jodogne <s.jodogne@gmail.com> parents: 3677 diff changeset	1491 * "queryLevel", "instances" contains one the Orthanc ID of one
6358923d3ced C-FIND: forbid wildcard matching on some VRs, ignore main tags below the queried level Sebastien Jodogne <s.jodogne@gmail.com> parents: 3677 diff changeset	1492 * sample instance from this resource.
6358923d3ced C-FIND: forbid wildcard matching on some VRs, ignore main tags below the queried level Sebastien Jodogne <s.jodogne@gmail.com> parents: 3677 diff changeset	1493 **/
1757 98abb8d7f905 ServerContext::Apply lookup Sebastien Jodogne <s.jodogne@gmail.com> parents: 1741 diff changeset	1494 assert(resources.size() == instances.size());
98abb8d7f905 ServerContext::Apply lookup Sebastien Jodogne <s.jodogne@gmail.com> parents: 1741 diff changeset	1495
3001 7695a9c81099 refactoring /tools/find using LookupResource::IVisitor Sebastien Jodogne <s.jodogne@gmail.com> parents: 2965 diff changeset	1496 size_t countResults = 0;
2304 563bf878407a Argument "Since" in URI "/tools/find" (related to issue 53) Sebastien Jodogne <s.jodogne@gmail.com> parents: 2244 diff changeset	1497 size_t skipped = 0;
3015 abe49ca61cd5 On C-FIND, avoid accessing the storage area whenever possible Sebastien Jodogne <s.jodogne@gmail.com> parents: 3012 diff changeset	1498
abe49ca61cd5 On C-FIND, avoid accessing the storage area whenever possible Sebastien Jodogne <s.jodogne@gmail.com> parents: 3012 diff changeset	1499 const bool isDicomAsJsonNeeded = visitor.IsDicomAsJsonNeeded();
3012 af1530b45290 Optimization: On finds, do not read JSON (disk) if main DICOM tags (DB) are sufficient Sebastien Jodogne <s.jodogne@gmail.com> parents: 3005 diff changeset	1500
1757 98abb8d7f905 ServerContext::Apply lookup Sebastien Jodogne <s.jodogne@gmail.com> parents: 1741 diff changeset	1501 for (size_t i = 0; i < instances.size(); i++)
98abb8d7f905 ServerContext::Apply lookup Sebastien Jodogne <s.jodogne@gmail.com> parents: 1741 diff changeset	1502 {
3012 af1530b45290 Optimization: On finds, do not read JSON (disk) if main DICOM tags (DB) are sufficient Sebastien Jodogne <s.jodogne@gmail.com> parents: 3005 diff changeset	1503 // Optimization in Orthanc 1.5.1 - Don't read the full JSON from
af1530b45290 Optimization: On finds, do not read JSON (disk) if main DICOM tags (DB) are sufficient Sebastien Jodogne <s.jodogne@gmail.com> parents: 3005 diff changeset	1504 // the disk if only "main DICOM tags" are to be returned
af1530b45290 Optimization: On finds, do not read JSON (disk) if main DICOM tags (DB) are sufficient Sebastien Jodogne <s.jodogne@gmail.com> parents: 3005 diff changeset	1505
5058 d4e5ca0c9307 Fix the "Never" option of the "StorageAccessOnFind" that was sill accessing files (bug introduced in 1.11.0) Alain Mazy <am@osimis.io> parents: 5048 diff changeset	1506 boost::shared_ptr<Json::Value> dicomAsJson;
3012 af1530b45290 Optimization: On finds, do not read JSON (disk) if main DICOM tags (DB) are sufficient Sebastien Jodogne <s.jodogne@gmail.com> parents: 3005 diff changeset	1507
af1530b45290 Optimization: On finds, do not read JSON (disk) if main DICOM tags (DB) are sufficient Sebastien Jodogne <s.jodogne@gmail.com> parents: 3005 diff changeset	1508 bool hasOnlyMainDicomTags;
af1530b45290 Optimization: On finds, do not read JSON (disk) if main DICOM tags (DB) are sufficient Sebastien Jodogne <s.jodogne@gmail.com> parents: 3005 diff changeset	1509 DicomMap dicom;
4937 3f9b9865c8cc include requested tags from storage if needed Alain Mazy <am@osimis.io> parents: 4936 diff changeset	1510 DicomMap allMainDicomTagsFromDB;
3012 af1530b45290 Optimization: On finds, do not read JSON (disk) if main DICOM tags (DB) are sufficient Sebastien Jodogne <s.jodogne@gmail.com> parents: 3005 diff changeset	1511
5058 d4e5ca0c9307 Fix the "Never" option of the "StorageAccessOnFind" that was sill accessing files (bug introduced in 1.11.0) Alain Mazy <am@osimis.io> parents: 5048 diff changeset	1512 if (!IsStorageAccessAllowedForAnswers(findStorageAccessMode_)
d4e5ca0c9307 Fix the "Never" option of the "StorageAccessOnFind" that was sill accessing files (bug introduced in 1.11.0) Alain Mazy <am@osimis.io> parents: 5048 diff changeset	1513 \|\| fastLookup->HasOnlyMainDicomTags())
3012 af1530b45290 Optimization: On finds, do not read JSON (disk) if main DICOM tags (DB) are sufficient Sebastien Jodogne <s.jodogne@gmail.com> parents: 3005 diff changeset	1514 {
af1530b45290 Optimization: On finds, do not read JSON (disk) if main DICOM tags (DB) are sufficient Sebastien Jodogne <s.jodogne@gmail.com> parents: 3005 diff changeset	1515 // Case (1): The main DICOM tags, as stored in the database,
af1530b45290 Optimization: On finds, do not read JSON (disk) if main DICOM tags (DB) are sufficient Sebastien Jodogne <s.jodogne@gmail.com> parents: 3005 diff changeset	1516 // are sufficient to look for match
3015 abe49ca61cd5 On C-FIND, avoid accessing the storage area whenever possible Sebastien Jodogne <s.jodogne@gmail.com> parents: 3012 diff changeset	1517
4944 f377d5643538 new Warnings configuration + InstanceAvailability tag Alain Mazy <am@osimis.io> parents: 4941 diff changeset	1518 if (!GetIndex().GetAllMainDicomTags(allMainDicomTagsFromDB, instances[i]))
3015 abe49ca61cd5 On C-FIND, avoid accessing the storage area whenever possible Sebastien Jodogne <s.jodogne@gmail.com> parents: 3012 diff changeset	1519 {
abe49ca61cd5 On C-FIND, avoid accessing the storage area whenever possible Sebastien Jodogne <s.jodogne@gmail.com> parents: 3012 diff changeset	1520 // The instance has been removed during the execution of the
abe49ca61cd5 On C-FIND, avoid accessing the storage area whenever possible Sebastien Jodogne <s.jodogne@gmail.com> parents: 3012 diff changeset	1521 // lookup, ignore it
abe49ca61cd5 On C-FIND, avoid accessing the storage area whenever possible Sebastien Jodogne <s.jodogne@gmail.com> parents: 3012 diff changeset	1522 continue;
abe49ca61cd5 On C-FIND, avoid accessing the storage area whenever possible Sebastien Jodogne <s.jodogne@gmail.com> parents: 3012 diff changeset	1523 }
3679 6358923d3ced C-FIND: forbid wildcard matching on some VRs, ignore main tags below the queried level Sebastien Jodogne <s.jodogne@gmail.com> parents: 3677 diff changeset	1524
6358923d3ced C-FIND: forbid wildcard matching on some VRs, ignore main tags below the queried level Sebastien Jodogne <s.jodogne@gmail.com> parents: 3677 diff changeset	1525 // New in Orthanc 1.6.0: Only keep the main DICOM tags at the
6358923d3ced C-FIND: forbid wildcard matching on some VRs, ignore main tags below the queried level Sebastien Jodogne <s.jodogne@gmail.com> parents: 3677 diff changeset	1526 // level of interest for the query
6358923d3ced C-FIND: forbid wildcard matching on some VRs, ignore main tags below the queried level Sebastien Jodogne <s.jodogne@gmail.com> parents: 3677 diff changeset	1527 switch (queryLevel)
6358923d3ced C-FIND: forbid wildcard matching on some VRs, ignore main tags below the queried level Sebastien Jodogne <s.jodogne@gmail.com> parents: 3677 diff changeset	1528 {
6358923d3ced C-FIND: forbid wildcard matching on some VRs, ignore main tags below the queried level Sebastien Jodogne <s.jodogne@gmail.com> parents: 3677 diff changeset	1529 // WARNING: Don't reorder cases below, and don't add "break"
6358923d3ced C-FIND: forbid wildcard matching on some VRs, ignore main tags below the queried level Sebastien Jodogne <s.jodogne@gmail.com> parents: 3677 diff changeset	1530 case ResourceType_Instance:
4937 3f9b9865c8cc include requested tags from storage if needed Alain Mazy <am@osimis.io> parents: 4936 diff changeset	1531 dicom.MergeMainDicomTags(allMainDicomTagsFromDB, ResourceType_Instance);
3679 6358923d3ced C-FIND: forbid wildcard matching on some VRs, ignore main tags below the queried level Sebastien Jodogne <s.jodogne@gmail.com> parents: 3677 diff changeset	1532
6358923d3ced C-FIND: forbid wildcard matching on some VRs, ignore main tags below the queried level Sebastien Jodogne <s.jodogne@gmail.com> parents: 3677 diff changeset	1533 case ResourceType_Series:
4937 3f9b9865c8cc include requested tags from storage if needed Alain Mazy <am@osimis.io> parents: 4936 diff changeset	1534 dicom.MergeMainDicomTags(allMainDicomTagsFromDB, ResourceType_Series);
3679 6358923d3ced C-FIND: forbid wildcard matching on some VRs, ignore main tags below the queried level Sebastien Jodogne <s.jodogne@gmail.com> parents: 3677 diff changeset	1535
6358923d3ced C-FIND: forbid wildcard matching on some VRs, ignore main tags below the queried level Sebastien Jodogne <s.jodogne@gmail.com> parents: 3677 diff changeset	1536 case ResourceType_Study:
4937 3f9b9865c8cc include requested tags from storage if needed Alain Mazy <am@osimis.io> parents: 4936 diff changeset	1537 dicom.MergeMainDicomTags(allMainDicomTagsFromDB, ResourceType_Study);
3679 6358923d3ced C-FIND: forbid wildcard matching on some VRs, ignore main tags below the queried level Sebastien Jodogne <s.jodogne@gmail.com> parents: 3677 diff changeset	1538
6358923d3ced C-FIND: forbid wildcard matching on some VRs, ignore main tags below the queried level Sebastien Jodogne <s.jodogne@gmail.com> parents: 3677 diff changeset	1539 case ResourceType_Patient:
4937 3f9b9865c8cc include requested tags from storage if needed Alain Mazy <am@osimis.io> parents: 4936 diff changeset	1540 dicom.MergeMainDicomTags(allMainDicomTagsFromDB, ResourceType_Patient);
3679 6358923d3ced C-FIND: forbid wildcard matching on some VRs, ignore main tags below the queried level Sebastien Jodogne <s.jodogne@gmail.com> parents: 3677 diff changeset	1541 break;
6358923d3ced C-FIND: forbid wildcard matching on some VRs, ignore main tags below the queried level Sebastien Jodogne <s.jodogne@gmail.com> parents: 3677 diff changeset	1542
6358923d3ced C-FIND: forbid wildcard matching on some VRs, ignore main tags below the queried level Sebastien Jodogne <s.jodogne@gmail.com> parents: 3677 diff changeset	1543 default:
6358923d3ced C-FIND: forbid wildcard matching on some VRs, ignore main tags below the queried level Sebastien Jodogne <s.jodogne@gmail.com> parents: 3677 diff changeset	1544 throw OrthancException(ErrorCode_InternalError);
6358923d3ced C-FIND: forbid wildcard matching on some VRs, ignore main tags below the queried level Sebastien Jodogne <s.jodogne@gmail.com> parents: 3677 diff changeset	1545 }
3015 abe49ca61cd5 On C-FIND, avoid accessing the storage area whenever possible Sebastien Jodogne <s.jodogne@gmail.com> parents: 3012 diff changeset	1546
3012 af1530b45290 Optimization: On finds, do not read JSON (disk) if main DICOM tags (DB) are sufficient Sebastien Jodogne <s.jodogne@gmail.com> parents: 3005 diff changeset	1547 hasOnlyMainDicomTags = true;
af1530b45290 Optimization: On finds, do not read JSON (disk) if main DICOM tags (DB) are sufficient Sebastien Jodogne <s.jodogne@gmail.com> parents: 3005 diff changeset	1548 }
af1530b45290 Optimization: On finds, do not read JSON (disk) if main DICOM tags (DB) are sufficient Sebastien Jodogne <s.jodogne@gmail.com> parents: 3005 diff changeset	1549 else
af1530b45290 Optimization: On finds, do not read JSON (disk) if main DICOM tags (DB) are sufficient Sebastien Jodogne <s.jodogne@gmail.com> parents: 3005 diff changeset	1550 {
af1530b45290 Optimization: On finds, do not read JSON (disk) if main DICOM tags (DB) are sufficient Sebastien Jodogne <s.jodogne@gmail.com> parents: 3005 diff changeset	1551 // Case (2): Need to read the "DICOM-as-JSON" attachment from
af1530b45290 Optimization: On finds, do not read JSON (disk) if main DICOM tags (DB) are sufficient Sebastien Jodogne <s.jodogne@gmail.com> parents: 3005 diff changeset	1552 // the storage area
af1530b45290 Optimization: On finds, do not read JSON (disk) if main DICOM tags (DB) are sufficient Sebastien Jodogne <s.jodogne@gmail.com> parents: 3005 diff changeset	1553 dicomAsJson.reset(new Json::Value);
af1530b45290 Optimization: On finds, do not read JSON (disk) if main DICOM tags (DB) are sufficient Sebastien Jodogne <s.jodogne@gmail.com> parents: 3005 diff changeset	1554 ReadDicomAsJson(*dicomAsJson, instances[i]);
af1530b45290 Optimization: On finds, do not read JSON (disk) if main DICOM tags (DB) are sufficient Sebastien Jodogne <s.jodogne@gmail.com> parents: 3005 diff changeset	1555
af1530b45290 Optimization: On finds, do not read JSON (disk) if main DICOM tags (DB) are sufficient Sebastien Jodogne <s.jodogne@gmail.com> parents: 3005 diff changeset	1556 dicom.FromDicomAsJson(*dicomAsJson);
af1530b45290 Optimization: On finds, do not read JSON (disk) if main DICOM tags (DB) are sufficient Sebastien Jodogne <s.jodogne@gmail.com> parents: 3005 diff changeset	1557
af1530b45290 Optimization: On finds, do not read JSON (disk) if main DICOM tags (DB) are sufficient Sebastien Jodogne <s.jodogne@gmail.com> parents: 3005 diff changeset	1558 // This map contains the entire JSON, i.e. more than the main DICOM tags
af1530b45290 Optimization: On finds, do not read JSON (disk) if main DICOM tags (DB) are sufficient Sebastien Jodogne <s.jodogne@gmail.com> parents: 3005 diff changeset	1559 hasOnlyMainDicomTags = false;
af1530b45290 Optimization: On finds, do not read JSON (disk) if main DICOM tags (DB) are sufficient Sebastien Jodogne <s.jodogne@gmail.com> parents: 3005 diff changeset	1560 }
1757 98abb8d7f905 ServerContext::Apply lookup Sebastien Jodogne <s.jodogne@gmail.com> parents: 1741 diff changeset	1561
4978 2cfa50d8eb60 Speed-up handling of DicomModalitiesInStudy in C-Find and tools/find queries Alain Mazy <am@osimis.io> parents: 4977 diff changeset	1562 if (fastLookup->IsMatch(dicom))
1757 98abb8d7f905 ServerContext::Apply lookup Sebastien Jodogne <s.jodogne@gmail.com> parents: 1741 diff changeset	1563 {
4978 2cfa50d8eb60 Speed-up handling of DicomModalitiesInStudy in C-Find and tools/find queries Alain Mazy <am@osimis.io> parents: 4977 diff changeset	1564 bool isMatch = true;
2cfa50d8eb60 Speed-up handling of DicomModalitiesInStudy in C-Find and tools/find queries Alain Mazy <am@osimis.io> parents: 4977 diff changeset	1565
2cfa50d8eb60 Speed-up handling of DicomModalitiesInStudy in C-Find and tools/find queries Alain Mazy <am@osimis.io> parents: 4977 diff changeset	1566 if (hasModalitiesInStudyLookup)
2304 563bf878407a Argument "Since" in URI "/tools/find" (related to issue 53) Sebastien Jodogne <s.jodogne@gmail.com> parents: 2244 diff changeset	1567 {
4978 2cfa50d8eb60 Speed-up handling of DicomModalitiesInStudy in C-Find and tools/find queries Alain Mazy <am@osimis.io> parents: 4977 diff changeset	1568 std::set<DicomTag> requestedTags;
2cfa50d8eb60 Speed-up handling of DicomModalitiesInStudy in C-Find and tools/find queries Alain Mazy <am@osimis.io> parents: 4977 diff changeset	1569 requestedTags.insert(DICOM_TAG_MODALITIES_IN_STUDY);
2cfa50d8eb60 Speed-up handling of DicomModalitiesInStudy in C-Find and tools/find queries Alain Mazy <am@osimis.io> parents: 4977 diff changeset	1570 ExpandedResource resource;
2cfa50d8eb60 Speed-up handling of DicomModalitiesInStudy in C-Find and tools/find queries Alain Mazy <am@osimis.io> parents: 4977 diff changeset	1571 ComputeStudyTags(resource, *this, resources[i], requestedTags);
2cfa50d8eb60 Speed-up handling of DicomModalitiesInStudy in C-Find and tools/find queries Alain Mazy <am@osimis.io> parents: 4977 diff changeset	1572
2cfa50d8eb60 Speed-up handling of DicomModalitiesInStudy in C-Find and tools/find queries Alain Mazy <am@osimis.io> parents: 4977 diff changeset	1573 std::vector<std::string> modalities;
5222 3a61fd50f804 starting refactoring ExpandedResource Sebastien Jodogne <s.jodogne@gmail.com> parents: 5221 diff changeset	1574 Toolbox::TokenizeString(modalities, resource.GetMainDicomTags().GetValue(DICOM_TAG_MODALITIES_IN_STUDY).GetContent(), '\\');
4978 2cfa50d8eb60 Speed-up handling of DicomModalitiesInStudy in C-Find and tools/find queries Alain Mazy <am@osimis.io> parents: 4977 diff changeset	1575 bool hasAtLeastOneModalityMatching = false;
2cfa50d8eb60 Speed-up handling of DicomModalitiesInStudy in C-Find and tools/find queries Alain Mazy <am@osimis.io> parents: 4977 diff changeset	1576 for (size_t m = 0; m < modalities.size(); m++)
3012 af1530b45290 Optimization: On finds, do not read JSON (disk) if main DICOM tags (DB) are sufficient Sebastien Jodogne <s.jodogne@gmail.com> parents: 3005 diff changeset	1577 {
4978 2cfa50d8eb60 Speed-up handling of DicomModalitiesInStudy in C-Find and tools/find queries Alain Mazy <am@osimis.io> parents: 4977 diff changeset	1578 hasAtLeastOneModalityMatching \|= dicomModalitiesConstraint->IsMatch(modalities[m]);
3012 af1530b45290 Optimization: On finds, do not read JSON (disk) if main DICOM tags (DB) are sufficient Sebastien Jodogne <s.jodogne@gmail.com> parents: 3005 diff changeset	1579 }
af1530b45290 Optimization: On finds, do not read JSON (disk) if main DICOM tags (DB) are sufficient Sebastien Jodogne <s.jodogne@gmail.com> parents: 3005 diff changeset	1580
4978 2cfa50d8eb60 Speed-up handling of DicomModalitiesInStudy in C-Find and tools/find queries Alain Mazy <am@osimis.io> parents: 4977 diff changeset	1581 isMatch = isMatch && hasAtLeastOneModalityMatching;
2cfa50d8eb60 Speed-up handling of DicomModalitiesInStudy in C-Find and tools/find queries Alain Mazy <am@osimis.io> parents: 4977 diff changeset	1582 // copy the value of ModalitiesInStudy such that it can be reused to build the answer
5222 3a61fd50f804 starting refactoring ExpandedResource Sebastien Jodogne <s.jodogne@gmail.com> parents: 5221 diff changeset	1583 allMainDicomTagsFromDB.SetValue(DICOM_TAG_MODALITIES_IN_STUDY, resource.GetMainDicomTags().GetValue(DICOM_TAG_MODALITIES_IN_STUDY));
4978 2cfa50d8eb60 Speed-up handling of DicomModalitiesInStudy in C-Find and tools/find queries Alain Mazy <am@osimis.io> parents: 4977 diff changeset	1584 }
2cfa50d8eb60 Speed-up handling of DicomModalitiesInStudy in C-Find and tools/find queries Alain Mazy <am@osimis.io> parents: 4977 diff changeset	1585
2cfa50d8eb60 Speed-up handling of DicomModalitiesInStudy in C-Find and tools/find queries Alain Mazy <am@osimis.io> parents: 4977 diff changeset	1586 if (isMatch)
2cfa50d8eb60 Speed-up handling of DicomModalitiesInStudy in C-Find and tools/find queries Alain Mazy <am@osimis.io> parents: 4977 diff changeset	1587 {
2cfa50d8eb60 Speed-up handling of DicomModalitiesInStudy in C-Find and tools/find queries Alain Mazy <am@osimis.io> parents: 4977 diff changeset	1588 if (skipped < since)
3012 af1530b45290 Optimization: On finds, do not read JSON (disk) if main DICOM tags (DB) are sufficient Sebastien Jodogne <s.jodogne@gmail.com> parents: 3005 diff changeset	1589 {
4978 2cfa50d8eb60 Speed-up handling of DicomModalitiesInStudy in C-Find and tools/find queries Alain Mazy <am@osimis.io> parents: 4977 diff changeset	1590 skipped++;
2cfa50d8eb60 Speed-up handling of DicomModalitiesInStudy in C-Find and tools/find queries Alain Mazy <am@osimis.io> parents: 4977 diff changeset	1591 }
2cfa50d8eb60 Speed-up handling of DicomModalitiesInStudy in C-Find and tools/find queries Alain Mazy <am@osimis.io> parents: 4977 diff changeset	1592 else if (limit != 0 &&
2cfa50d8eb60 Speed-up handling of DicomModalitiesInStudy in C-Find and tools/find queries Alain Mazy <am@osimis.io> parents: 4977 diff changeset	1593 countResults >= limit)
2cfa50d8eb60 Speed-up handling of DicomModalitiesInStudy in C-Find and tools/find queries Alain Mazy <am@osimis.io> parents: 4977 diff changeset	1594 {
2cfa50d8eb60 Speed-up handling of DicomModalitiesInStudy in C-Find and tools/find queries Alain Mazy <am@osimis.io> parents: 4977 diff changeset	1595 // Too many results, don't mark as complete
2cfa50d8eb60 Speed-up handling of DicomModalitiesInStudy in C-Find and tools/find queries Alain Mazy <am@osimis.io> parents: 4977 diff changeset	1596 complete = false;
2cfa50d8eb60 Speed-up handling of DicomModalitiesInStudy in C-Find and tools/find queries Alain Mazy <am@osimis.io> parents: 4977 diff changeset	1597 break;
3012 af1530b45290 Optimization: On finds, do not read JSON (disk) if main DICOM tags (DB) are sufficient Sebastien Jodogne <s.jodogne@gmail.com> parents: 3005 diff changeset	1598 }
af1530b45290 Optimization: On finds, do not read JSON (disk) if main DICOM tags (DB) are sufficient Sebastien Jodogne <s.jodogne@gmail.com> parents: 3005 diff changeset	1599 else
af1530b45290 Optimization: On finds, do not read JSON (disk) if main DICOM tags (DB) are sufficient Sebastien Jodogne <s.jodogne@gmail.com> parents: 3005 diff changeset	1600 {
5058 d4e5ca0c9307 Fix the "Never" option of the "StorageAccessOnFind" that was sill accessing files (bug introduced in 1.11.0) Alain Mazy <am@osimis.io> parents: 5048 diff changeset	1601 if (IsStorageAccessAllowedForAnswers(findStorageAccessMode_) &&
4978 2cfa50d8eb60 Speed-up handling of DicomModalitiesInStudy in C-Find and tools/find queries Alain Mazy <am@osimis.io> parents: 4977 diff changeset	1602 dicomAsJson.get() == NULL &&
2cfa50d8eb60 Speed-up handling of DicomModalitiesInStudy in C-Find and tools/find queries Alain Mazy <am@osimis.io> parents: 4977 diff changeset	1603 isDicomAsJsonNeeded)
2cfa50d8eb60 Speed-up handling of DicomModalitiesInStudy in C-Find and tools/find queries Alain Mazy <am@osimis.io> parents: 4977 diff changeset	1604 {
2cfa50d8eb60 Speed-up handling of DicomModalitiesInStudy in C-Find and tools/find queries Alain Mazy <am@osimis.io> parents: 4977 diff changeset	1605 dicomAsJson.reset(new Json::Value);
2cfa50d8eb60 Speed-up handling of DicomModalitiesInStudy in C-Find and tools/find queries Alain Mazy <am@osimis.io> parents: 4977 diff changeset	1606 ReadDicomAsJson(*dicomAsJson, instances[i]);
2cfa50d8eb60 Speed-up handling of DicomModalitiesInStudy in C-Find and tools/find queries Alain Mazy <am@osimis.io> parents: 4977 diff changeset	1607 }
3012 af1530b45290 Optimization: On finds, do not read JSON (disk) if main DICOM tags (DB) are sufficient Sebastien Jodogne <s.jodogne@gmail.com> parents: 3005 diff changeset	1608
4978 2cfa50d8eb60 Speed-up handling of DicomModalitiesInStudy in C-Find and tools/find queries Alain Mazy <am@osimis.io> parents: 4977 diff changeset	1609 if (hasOnlyMainDicomTags)
2cfa50d8eb60 Speed-up handling of DicomModalitiesInStudy in C-Find and tools/find queries Alain Mazy <am@osimis.io> parents: 4977 diff changeset	1610 {
2cfa50d8eb60 Speed-up handling of DicomModalitiesInStudy in C-Find and tools/find queries Alain Mazy <am@osimis.io> parents: 4977 diff changeset	1611 // This is Case (1): The variable "dicom" only contains the main DICOM tags
2cfa50d8eb60 Speed-up handling of DicomModalitiesInStudy in C-Find and tools/find queries Alain Mazy <am@osimis.io> parents: 4977 diff changeset	1612 visitor.Visit(resources[i], instances[i], allMainDicomTagsFromDB, dicomAsJson.get());
2cfa50d8eb60 Speed-up handling of DicomModalitiesInStudy in C-Find and tools/find queries Alain Mazy <am@osimis.io> parents: 4977 diff changeset	1613 }
2cfa50d8eb60 Speed-up handling of DicomModalitiesInStudy in C-Find and tools/find queries Alain Mazy <am@osimis.io> parents: 4977 diff changeset	1614 else
2cfa50d8eb60 Speed-up handling of DicomModalitiesInStudy in C-Find and tools/find queries Alain Mazy <am@osimis.io> parents: 4977 diff changeset	1615 {
2cfa50d8eb60 Speed-up handling of DicomModalitiesInStudy in C-Find and tools/find queries Alain Mazy <am@osimis.io> parents: 4977 diff changeset	1616 // Remove the non-main DICOM tags from "dicom" if Case (2)
2cfa50d8eb60 Speed-up handling of DicomModalitiesInStudy in C-Find and tools/find queries Alain Mazy <am@osimis.io> parents: 4977 diff changeset	1617 // was used, for consistency with Case (1)
2cfa50d8eb60 Speed-up handling of DicomModalitiesInStudy in C-Find and tools/find queries Alain Mazy <am@osimis.io> parents: 4977 diff changeset	1618
2cfa50d8eb60 Speed-up handling of DicomModalitiesInStudy in C-Find and tools/find queries Alain Mazy <am@osimis.io> parents: 4977 diff changeset	1619 DicomMap mainDicomTags;
2cfa50d8eb60 Speed-up handling of DicomModalitiesInStudy in C-Find and tools/find queries Alain Mazy <am@osimis.io> parents: 4977 diff changeset	1620 mainDicomTags.ExtractMainDicomTags(dicom);
2cfa50d8eb60 Speed-up handling of DicomModalitiesInStudy in C-Find and tools/find queries Alain Mazy <am@osimis.io> parents: 4977 diff changeset	1621 visitor.Visit(resources[i], instances[i], mainDicomTags, dicomAsJson.get());
2cfa50d8eb60 Speed-up handling of DicomModalitiesInStudy in C-Find and tools/find queries Alain Mazy <am@osimis.io> parents: 4977 diff changeset	1622 }
2cfa50d8eb60 Speed-up handling of DicomModalitiesInStudy in C-Find and tools/find queries Alain Mazy <am@osimis.io> parents: 4977 diff changeset	1623
2cfa50d8eb60 Speed-up handling of DicomModalitiesInStudy in C-Find and tools/find queries Alain Mazy <am@osimis.io> parents: 4977 diff changeset	1624 countResults ++;
3012 af1530b45290 Optimization: On finds, do not read JSON (disk) if main DICOM tags (DB) are sufficient Sebastien Jodogne <s.jodogne@gmail.com> parents: 3005 diff changeset	1625 }
1757 98abb8d7f905 ServerContext::Apply lookup Sebastien Jodogne <s.jodogne@gmail.com> parents: 1741 diff changeset	1626 }
98abb8d7f905 ServerContext::Apply lookup Sebastien Jodogne <s.jodogne@gmail.com> parents: 1741 diff changeset	1627 }
98abb8d7f905 ServerContext::Apply lookup Sebastien Jodogne <s.jodogne@gmail.com> parents: 1741 diff changeset	1628 }
3001 7695a9c81099 refactoring /tools/find using LookupResource::IVisitor Sebastien Jodogne <s.jodogne@gmail.com> parents: 2965 diff changeset	1629
3003 5ae3ff2398e9 refactoring OrthancFindRequestHandler using LookupResource::IVisitor Sebastien Jodogne <s.jodogne@gmail.com> parents: 3001 diff changeset	1630 if (complete)
5ae3ff2398e9 refactoring OrthancFindRequestHandler using LookupResource::IVisitor Sebastien Jodogne <s.jodogne@gmail.com> parents: 3001 diff changeset	1631 {
5ae3ff2398e9 refactoring OrthancFindRequestHandler using LookupResource::IVisitor Sebastien Jodogne <s.jodogne@gmail.com> parents: 3001 diff changeset	1632 visitor.MarkAsComplete();
5ae3ff2398e9 refactoring OrthancFindRequestHandler using LookupResource::IVisitor Sebastien Jodogne <s.jodogne@gmail.com> parents: 3001 diff changeset	1633 }
5ae3ff2398e9 refactoring OrthancFindRequestHandler using LookupResource::IVisitor Sebastien Jodogne <s.jodogne@gmail.com> parents: 3001 diff changeset	1634
5ae3ff2398e9 refactoring OrthancFindRequestHandler using LookupResource::IVisitor Sebastien Jodogne <s.jodogne@gmail.com> parents: 3001 diff changeset	1635 LOG(INFO) << "Number of matching resources: " << countResults;
1757 98abb8d7f905 ServerContext::Apply lookup Sebastien Jodogne <s.jodogne@gmail.com> parents: 1741 diff changeset	1636 }
98abb8d7f905 ServerContext::Apply lookup Sebastien Jodogne <s.jodogne@gmail.com> parents: 1741 diff changeset	1637
3015 abe49ca61cd5 On C-FIND, avoid accessing the storage area whenever possible Sebastien Jodogne <s.jodogne@gmail.com> parents: 3012 diff changeset	1638 bool ServerContext::LookupOrReconstructMetadata(std::string& target,
abe49ca61cd5 On C-FIND, avoid accessing the storage area whenever possible Sebastien Jodogne <s.jodogne@gmail.com> parents: 3012 diff changeset	1639 const std::string& publicId,
4460 6831de40acd9 New metadata automatically computed at the series level: "RemoteAET" Sebastien Jodogne <s.jodogne@gmail.com> parents: 4457 diff changeset	1640 ResourceType level,
3015 abe49ca61cd5 On C-FIND, avoid accessing the storage area whenever possible Sebastien Jodogne <s.jodogne@gmail.com> parents: 3012 diff changeset	1641 MetadataType metadata)
abe49ca61cd5 On C-FIND, avoid accessing the storage area whenever possible Sebastien Jodogne <s.jodogne@gmail.com> parents: 3012 diff changeset	1642 {
abe49ca61cd5 On C-FIND, avoid accessing the storage area whenever possible Sebastien Jodogne <s.jodogne@gmail.com> parents: 3012 diff changeset	1643 // This is a backwards-compatibility function, that can
abe49ca61cd5 On C-FIND, avoid accessing the storage area whenever possible Sebastien Jodogne <s.jodogne@gmail.com> parents: 3012 diff changeset	1644 // reconstruct metadata that were not generated by an older
abe49ca61cd5 On C-FIND, avoid accessing the storage area whenever possible Sebastien Jodogne <s.jodogne@gmail.com> parents: 3012 diff changeset	1645 // release of Orthanc
abe49ca61cd5 On C-FIND, avoid accessing the storage area whenever possible Sebastien Jodogne <s.jodogne@gmail.com> parents: 3012 diff changeset	1646
abe49ca61cd5 On C-FIND, avoid accessing the storage area whenever possible Sebastien Jodogne <s.jodogne@gmail.com> parents: 3012 diff changeset	1647 if (metadata == MetadataType_Instance_SopClassUid \|\|
abe49ca61cd5 On C-FIND, avoid accessing the storage area whenever possible Sebastien Jodogne <s.jodogne@gmail.com> parents: 3012 diff changeset	1648 metadata == MetadataType_Instance_TransferSyntax)
abe49ca61cd5 On C-FIND, avoid accessing the storage area whenever possible Sebastien Jodogne <s.jodogne@gmail.com> parents: 3012 diff changeset	1649 {
4623 95ffe3b6ef7c handling of revisions for metadata Sebastien Jodogne <s.jodogne@gmail.com> parents: 4607 diff changeset	1650 int64_t revision; // Ignored
95ffe3b6ef7c handling of revisions for metadata Sebastien Jodogne <s.jodogne@gmail.com> parents: 4607 diff changeset	1651 if (index_.LookupMetadata(target, revision, publicId, level, metadata))
3015 abe49ca61cd5 On C-FIND, avoid accessing the storage area whenever possible Sebastien Jodogne <s.jodogne@gmail.com> parents: 3012 diff changeset	1652 {
abe49ca61cd5 On C-FIND, avoid accessing the storage area whenever possible Sebastien Jodogne <s.jodogne@gmail.com> parents: 3012 diff changeset	1653 return true;
abe49ca61cd5 On C-FIND, avoid accessing the storage area whenever possible Sebastien Jodogne <s.jodogne@gmail.com> parents: 3012 diff changeset	1654 }
abe49ca61cd5 On C-FIND, avoid accessing the storage area whenever possible Sebastien Jodogne <s.jodogne@gmail.com> parents: 3012 diff changeset	1655 else
abe49ca61cd5 On C-FIND, avoid accessing the storage area whenever possible Sebastien Jodogne <s.jodogne@gmail.com> parents: 3012 diff changeset	1656 {
abe49ca61cd5 On C-FIND, avoid accessing the storage area whenever possible Sebastien Jodogne <s.jodogne@gmail.com> parents: 3012 diff changeset	1657 // These metadata are mandatory in DICOM instances, and were
abe49ca61cd5 On C-FIND, avoid accessing the storage area whenever possible Sebastien Jodogne <s.jodogne@gmail.com> parents: 3012 diff changeset	1658 // introduced in Orthanc 1.2.0. The fact that
abe49ca61cd5 On C-FIND, avoid accessing the storage area whenever possible Sebastien Jodogne <s.jodogne@gmail.com> parents: 3012 diff changeset	1659 // "LookupMetadata()" has failed indicates that this database
abe49ca61cd5 On C-FIND, avoid accessing the storage area whenever possible Sebastien Jodogne <s.jodogne@gmail.com> parents: 3012 diff changeset	1660 // comes from an older release of Orthanc.
abe49ca61cd5 On C-FIND, avoid accessing the storage area whenever possible Sebastien Jodogne <s.jodogne@gmail.com> parents: 3012 diff changeset	1661
abe49ca61cd5 On C-FIND, avoid accessing the storage area whenever possible Sebastien Jodogne <s.jodogne@gmail.com> parents: 3012 diff changeset	1662 DicomTag tag(0, 0);
abe49ca61cd5 On C-FIND, avoid accessing the storage area whenever possible Sebastien Jodogne <s.jodogne@gmail.com> parents: 3012 diff changeset	1663
abe49ca61cd5 On C-FIND, avoid accessing the storage area whenever possible Sebastien Jodogne <s.jodogne@gmail.com> parents: 3012 diff changeset	1664 switch (metadata)
abe49ca61cd5 On C-FIND, avoid accessing the storage area whenever possible Sebastien Jodogne <s.jodogne@gmail.com> parents: 3012 diff changeset	1665 {
abe49ca61cd5 On C-FIND, avoid accessing the storage area whenever possible Sebastien Jodogne <s.jodogne@gmail.com> parents: 3012 diff changeset	1666 case MetadataType_Instance_SopClassUid:
abe49ca61cd5 On C-FIND, avoid accessing the storage area whenever possible Sebastien Jodogne <s.jodogne@gmail.com> parents: 3012 diff changeset	1667 tag = DICOM_TAG_SOP_CLASS_UID;
abe49ca61cd5 On C-FIND, avoid accessing the storage area whenever possible Sebastien Jodogne <s.jodogne@gmail.com> parents: 3012 diff changeset	1668 break;
abe49ca61cd5 On C-FIND, avoid accessing the storage area whenever possible Sebastien Jodogne <s.jodogne@gmail.com> parents: 3012 diff changeset	1669
abe49ca61cd5 On C-FIND, avoid accessing the storage area whenever possible Sebastien Jodogne <s.jodogne@gmail.com> parents: 3012 diff changeset	1670 case MetadataType_Instance_TransferSyntax:
abe49ca61cd5 On C-FIND, avoid accessing the storage area whenever possible Sebastien Jodogne <s.jodogne@gmail.com> parents: 3012 diff changeset	1671 tag = DICOM_TAG_TRANSFER_SYNTAX_UID;
abe49ca61cd5 On C-FIND, avoid accessing the storage area whenever possible Sebastien Jodogne <s.jodogne@gmail.com> parents: 3012 diff changeset	1672 break;
abe49ca61cd5 On C-FIND, avoid accessing the storage area whenever possible Sebastien Jodogne <s.jodogne@gmail.com> parents: 3012 diff changeset	1673
abe49ca61cd5 On C-FIND, avoid accessing the storage area whenever possible Sebastien Jodogne <s.jodogne@gmail.com> parents: 3012 diff changeset	1674 default:
abe49ca61cd5 On C-FIND, avoid accessing the storage area whenever possible Sebastien Jodogne <s.jodogne@gmail.com> parents: 3012 diff changeset	1675 throw OrthancException(ErrorCode_InternalError);
abe49ca61cd5 On C-FIND, avoid accessing the storage area whenever possible Sebastien Jodogne <s.jodogne@gmail.com> parents: 3012 diff changeset	1676 }
abe49ca61cd5 On C-FIND, avoid accessing the storage area whenever possible Sebastien Jodogne <s.jodogne@gmail.com> parents: 3012 diff changeset	1677
abe49ca61cd5 On C-FIND, avoid accessing the storage area whenever possible Sebastien Jodogne <s.jodogne@gmail.com> parents: 3012 diff changeset	1678 Json::Value dicomAsJson;
abe49ca61cd5 On C-FIND, avoid accessing the storage area whenever possible Sebastien Jodogne <s.jodogne@gmail.com> parents: 3012 diff changeset	1679 ReadDicomAsJson(dicomAsJson, publicId);
abe49ca61cd5 On C-FIND, avoid accessing the storage area whenever possible Sebastien Jodogne <s.jodogne@gmail.com> parents: 3012 diff changeset	1680
abe49ca61cd5 On C-FIND, avoid accessing the storage area whenever possible Sebastien Jodogne <s.jodogne@gmail.com> parents: 3012 diff changeset	1681 DicomMap tags;
abe49ca61cd5 On C-FIND, avoid accessing the storage area whenever possible Sebastien Jodogne <s.jodogne@gmail.com> parents: 3012 diff changeset	1682 tags.FromDicomAsJson(dicomAsJson);
abe49ca61cd5 On C-FIND, avoid accessing the storage area whenever possible Sebastien Jodogne <s.jodogne@gmail.com> parents: 3012 diff changeset	1683
abe49ca61cd5 On C-FIND, avoid accessing the storage area whenever possible Sebastien Jodogne <s.jodogne@gmail.com> parents: 3012 diff changeset	1684 const DicomValue* value = tags.TestAndGetValue(tag);
abe49ca61cd5 On C-FIND, avoid accessing the storage area whenever possible Sebastien Jodogne <s.jodogne@gmail.com> parents: 3012 diff changeset	1685
abe49ca61cd5 On C-FIND, avoid accessing the storage area whenever possible Sebastien Jodogne <s.jodogne@gmail.com> parents: 3012 diff changeset	1686 if (value != NULL &&
abe49ca61cd5 On C-FIND, avoid accessing the storage area whenever possible Sebastien Jodogne <s.jodogne@gmail.com> parents: 3012 diff changeset	1687 !value->IsNull() &&
abe49ca61cd5 On C-FIND, avoid accessing the storage area whenever possible Sebastien Jodogne <s.jodogne@gmail.com> parents: 3012 diff changeset	1688 !value->IsBinary())
abe49ca61cd5 On C-FIND, avoid accessing the storage area whenever possible Sebastien Jodogne <s.jodogne@gmail.com> parents: 3012 diff changeset	1689 {
abe49ca61cd5 On C-FIND, avoid accessing the storage area whenever possible Sebastien Jodogne <s.jodogne@gmail.com> parents: 3012 diff changeset	1690 target = value->GetContent();
abe49ca61cd5 On C-FIND, avoid accessing the storage area whenever possible Sebastien Jodogne <s.jodogne@gmail.com> parents: 3012 diff changeset	1691
abe49ca61cd5 On C-FIND, avoid accessing the storage area whenever possible Sebastien Jodogne <s.jodogne@gmail.com> parents: 3012 diff changeset	1692 // Store for reuse
4623 95ffe3b6ef7c handling of revisions for metadata Sebastien Jodogne <s.jodogne@gmail.com> parents: 4607 diff changeset	1693 index_.OverwriteMetadata(publicId, metadata, target);
3015 abe49ca61cd5 On C-FIND, avoid accessing the storage area whenever possible Sebastien Jodogne <s.jodogne@gmail.com> parents: 3012 diff changeset	1694 return true;
abe49ca61cd5 On C-FIND, avoid accessing the storage area whenever possible Sebastien Jodogne <s.jodogne@gmail.com> parents: 3012 diff changeset	1695 }
abe49ca61cd5 On C-FIND, avoid accessing the storage area whenever possible Sebastien Jodogne <s.jodogne@gmail.com> parents: 3012 diff changeset	1696 else
abe49ca61cd5 On C-FIND, avoid accessing the storage area whenever possible Sebastien Jodogne <s.jodogne@gmail.com> parents: 3012 diff changeset	1697 {
abe49ca61cd5 On C-FIND, avoid accessing the storage area whenever possible Sebastien Jodogne <s.jodogne@gmail.com> parents: 3012 diff changeset	1698 // Should never happen
abe49ca61cd5 On C-FIND, avoid accessing the storage area whenever possible Sebastien Jodogne <s.jodogne@gmail.com> parents: 3012 diff changeset	1699 return false;
abe49ca61cd5 On C-FIND, avoid accessing the storage area whenever possible Sebastien Jodogne <s.jodogne@gmail.com> parents: 3012 diff changeset	1700 }
abe49ca61cd5 On C-FIND, avoid accessing the storage area whenever possible Sebastien Jodogne <s.jodogne@gmail.com> parents: 3012 diff changeset	1701 }
abe49ca61cd5 On C-FIND, avoid accessing the storage area whenever possible Sebastien Jodogne <s.jodogne@gmail.com> parents: 3012 diff changeset	1702 }
abe49ca61cd5 On C-FIND, avoid accessing the storage area whenever possible Sebastien Jodogne <s.jodogne@gmail.com> parents: 3012 diff changeset	1703 else
abe49ca61cd5 On C-FIND, avoid accessing the storage area whenever possible Sebastien Jodogne <s.jodogne@gmail.com> parents: 3012 diff changeset	1704 {
abe49ca61cd5 On C-FIND, avoid accessing the storage area whenever possible Sebastien Jodogne <s.jodogne@gmail.com> parents: 3012 diff changeset	1705 // No backward
4623 95ffe3b6ef7c handling of revisions for metadata Sebastien Jodogne <s.jodogne@gmail.com> parents: 4607 diff changeset	1706 int64_t revision; // Ignored
95ffe3b6ef7c handling of revisions for metadata Sebastien Jodogne <s.jodogne@gmail.com> parents: 4607 diff changeset	1707 return index_.LookupMetadata(target, revision, publicId, level, metadata);
3015 abe49ca61cd5 On C-FIND, avoid accessing the storage area whenever possible Sebastien Jodogne <s.jodogne@gmail.com> parents: 3012 diff changeset	1708 }
abe49ca61cd5 On C-FIND, avoid accessing the storage area whenever possible Sebastien Jodogne <s.jodogne@gmail.com> parents: 3012 diff changeset	1709 }
abe49ca61cd5 On C-FIND, avoid accessing the storage area whenever possible Sebastien Jodogne <s.jodogne@gmail.com> parents: 3012 diff changeset	1710
abe49ca61cd5 On C-FIND, avoid accessing the storage area whenever possible Sebastien Jodogne <s.jodogne@gmail.com> parents: 3012 diff changeset	1711
2626 e09021ddc00d cleanup Sebastien Jodogne <s.jodogne@gmail.com> parents: 2617 diff changeset	1712 void ServerContext::AddChildInstances(SetOfInstancesJob& job,
e09021ddc00d cleanup Sebastien Jodogne <s.jodogne@gmail.com> parents: 2617 diff changeset	1713 const std::string& publicId)
e09021ddc00d cleanup Sebastien Jodogne <s.jodogne@gmail.com> parents: 2617 diff changeset	1714 {
e09021ddc00d cleanup Sebastien Jodogne <s.jodogne@gmail.com> parents: 2617 diff changeset	1715 std::list<std::string> instances;
e09021ddc00d cleanup Sebastien Jodogne <s.jodogne@gmail.com> parents: 2617 diff changeset	1716 GetIndex().GetChildInstances(instances, publicId);
e09021ddc00d cleanup Sebastien Jodogne <s.jodogne@gmail.com> parents: 2617 diff changeset	1717
e09021ddc00d cleanup Sebastien Jodogne <s.jodogne@gmail.com> parents: 2617 diff changeset	1718 job.Reserve(job.GetInstancesCount() + instances.size());
e09021ddc00d cleanup Sebastien Jodogne <s.jodogne@gmail.com> parents: 2617 diff changeset	1719
e09021ddc00d cleanup Sebastien Jodogne <s.jodogne@gmail.com> parents: 2617 diff changeset	1720 for (std::list<std::string>::const_iterator
e09021ddc00d cleanup Sebastien Jodogne <s.jodogne@gmail.com> parents: 2617 diff changeset	1721 it = instances.begin(); it != instances.end(); ++it)
e09021ddc00d cleanup Sebastien Jodogne <s.jodogne@gmail.com> parents: 2617 diff changeset	1722 {
e09021ddc00d cleanup Sebastien Jodogne <s.jodogne@gmail.com> parents: 2617 diff changeset	1723 job.AddInstance(*it);
e09021ddc00d cleanup Sebastien Jodogne <s.jodogne@gmail.com> parents: 2617 diff changeset	1724 }
e09021ddc00d cleanup Sebastien Jodogne <s.jodogne@gmail.com> parents: 2617 diff changeset	1725 }
2940 4767d36679ed refactoring access to Orthanc configuration Sebastien Jodogne <s.jodogne@gmail.com> parents: 2925 diff changeset	1726
4767d36679ed refactoring access to Orthanc configuration Sebastien Jodogne <s.jodogne@gmail.com> parents: 2925 diff changeset	1727
4767d36679ed refactoring access to Orthanc configuration Sebastien Jodogne <s.jodogne@gmail.com> parents: 2925 diff changeset	1728 void ServerContext::SignalUpdatedModalities()
4767d36679ed refactoring access to Orthanc configuration Sebastien Jodogne <s.jodogne@gmail.com> parents: 2925 diff changeset	1729 {
4767d36679ed refactoring access to Orthanc configuration Sebastien Jodogne <s.jodogne@gmail.com> parents: 2925 diff changeset	1730 #if ORTHANC_ENABLE_PLUGINS == 1
4767d36679ed refactoring access to Orthanc configuration Sebastien Jodogne <s.jodogne@gmail.com> parents: 2925 diff changeset	1731 if (HasPlugins())
4767d36679ed refactoring access to Orthanc configuration Sebastien Jodogne <s.jodogne@gmail.com> parents: 2925 diff changeset	1732 {
4767d36679ed refactoring access to Orthanc configuration Sebastien Jodogne <s.jodogne@gmail.com> parents: 2925 diff changeset	1733 GetPlugins().SignalUpdatedModalities();
4767d36679ed refactoring access to Orthanc configuration Sebastien Jodogne <s.jodogne@gmail.com> parents: 2925 diff changeset	1734 }
4767d36679ed refactoring access to Orthanc configuration Sebastien Jodogne <s.jodogne@gmail.com> parents: 2925 diff changeset	1735 #endif
4767d36679ed refactoring access to Orthanc configuration Sebastien Jodogne <s.jodogne@gmail.com> parents: 2925 diff changeset	1736 }
4767d36679ed refactoring access to Orthanc configuration Sebastien Jodogne <s.jodogne@gmail.com> parents: 2925 diff changeset	1737
4767d36679ed refactoring access to Orthanc configuration Sebastien Jodogne <s.jodogne@gmail.com> parents: 2925 diff changeset	1738
4767d36679ed refactoring access to Orthanc configuration Sebastien Jodogne <s.jodogne@gmail.com> parents: 2925 diff changeset	1739 void ServerContext::SignalUpdatedPeers()
4767d36679ed refactoring access to Orthanc configuration Sebastien Jodogne <s.jodogne@gmail.com> parents: 2925 diff changeset	1740 {
4767d36679ed refactoring access to Orthanc configuration Sebastien Jodogne <s.jodogne@gmail.com> parents: 2925 diff changeset	1741 #if ORTHANC_ENABLE_PLUGINS == 1
4767d36679ed refactoring access to Orthanc configuration Sebastien Jodogne <s.jodogne@gmail.com> parents: 2925 diff changeset	1742 if (HasPlugins())
4767d36679ed refactoring access to Orthanc configuration Sebastien Jodogne <s.jodogne@gmail.com> parents: 2925 diff changeset	1743 {
4767d36679ed refactoring access to Orthanc configuration Sebastien Jodogne <s.jodogne@gmail.com> parents: 2925 diff changeset	1744 GetPlugins().SignalUpdatedPeers();
4767d36679ed refactoring access to Orthanc configuration Sebastien Jodogne <s.jodogne@gmail.com> parents: 2925 diff changeset	1745 }
4767d36679ed refactoring access to Orthanc configuration Sebastien Jodogne <s.jodogne@gmail.com> parents: 2925 diff changeset	1746 #endif
4767d36679ed refactoring access to Orthanc configuration Sebastien Jodogne <s.jodogne@gmail.com> parents: 2925 diff changeset	1747 }
3660 f159b731c47d IStorageCommitmentFactory Sebastien Jodogne <s.jodogne@gmail.com> parents: 3640 diff changeset	1748
f159b731c47d IStorageCommitmentFactory Sebastien Jodogne <s.jodogne@gmail.com> parents: 3640 diff changeset	1749
f159b731c47d IStorageCommitmentFactory Sebastien Jodogne <s.jodogne@gmail.com> parents: 3640 diff changeset	1750 IStorageCommitmentFactory::ILookupHandler*
f159b731c47d IStorageCommitmentFactory Sebastien Jodogne <s.jodogne@gmail.com> parents: 3640 diff changeset	1751 ServerContext::CreateStorageCommitment(const std::string& jobId,
f159b731c47d IStorageCommitmentFactory Sebastien Jodogne <s.jodogne@gmail.com> parents: 3640 diff changeset	1752 const std::string& transactionUid,
f159b731c47d IStorageCommitmentFactory Sebastien Jodogne <s.jodogne@gmail.com> parents: 3640 diff changeset	1753 const std::vector<std::string>& sopClassUids,
3662 d8371b4302ff OrthancPluginRegisterStorageCommitmentScpCallback() Sebastien Jodogne <s.jodogne@gmail.com> parents: 3660 diff changeset	1754 const std::vector<std::string>& sopInstanceUids,
d8371b4302ff OrthancPluginRegisterStorageCommitmentScpCallback() Sebastien Jodogne <s.jodogne@gmail.com> parents: 3660 diff changeset	1755 const std::string& remoteAet,
d8371b4302ff OrthancPluginRegisterStorageCommitmentScpCallback() Sebastien Jodogne <s.jodogne@gmail.com> parents: 3660 diff changeset	1756 const std::string& calledAet)
3660 f159b731c47d IStorageCommitmentFactory Sebastien Jodogne <s.jodogne@gmail.com> parents: 3640 diff changeset	1757 {
f159b731c47d IStorageCommitmentFactory Sebastien Jodogne <s.jodogne@gmail.com> parents: 3640 diff changeset	1758 #if ORTHANC_ENABLE_PLUGINS == 1
f159b731c47d IStorageCommitmentFactory Sebastien Jodogne <s.jodogne@gmail.com> parents: 3640 diff changeset	1759 if (HasPlugins())
f159b731c47d IStorageCommitmentFactory Sebastien Jodogne <s.jodogne@gmail.com> parents: 3640 diff changeset	1760 {
3662 d8371b4302ff OrthancPluginRegisterStorageCommitmentScpCallback() Sebastien Jodogne <s.jodogne@gmail.com> parents: 3660 diff changeset	1761 return GetPlugins().CreateStorageCommitment(
d8371b4302ff OrthancPluginRegisterStorageCommitmentScpCallback() Sebastien Jodogne <s.jodogne@gmail.com> parents: 3660 diff changeset	1762 jobId, transactionUid, sopClassUids, sopInstanceUids, remoteAet, calledAet);
3660 f159b731c47d IStorageCommitmentFactory Sebastien Jodogne <s.jodogne@gmail.com> parents: 3640 diff changeset	1763 }
f159b731c47d IStorageCommitmentFactory Sebastien Jodogne <s.jodogne@gmail.com> parents: 3640 diff changeset	1764 #endif
f159b731c47d IStorageCommitmentFactory Sebastien Jodogne <s.jodogne@gmail.com> parents: 3640 diff changeset	1765
f159b731c47d IStorageCommitmentFactory Sebastien Jodogne <s.jodogne@gmail.com> parents: 3640 diff changeset	1766 return NULL;
f159b731c47d IStorageCommitmentFactory Sebastien Jodogne <s.jodogne@gmail.com> parents: 3640 diff changeset	1767 }
3894 8f7ad4989fec transcoding to uncompressed transfer syntaxes over DICOM protocol is implemented Sebastien Jodogne <s.jodogne@gmail.com> parents: 3839 diff changeset	1768
8f7ad4989fec transcoding to uncompressed transfer syntaxes over DICOM protocol is implemented Sebastien Jodogne <s.jodogne@gmail.com> parents: 3839 diff changeset	1769
3928 4cdc875510d1 ServerContext::DecodeDicomFrame() Sebastien Jodogne <s.jodogne@gmail.com> parents: 3913 diff changeset	1770 ImageAccessor* ServerContext::DecodeDicomFrame(const std::string& publicId,
4cdc875510d1 ServerContext::DecodeDicomFrame() Sebastien Jodogne <s.jodogne@gmail.com> parents: 3913 diff changeset	1771 unsigned int frameIndex)
4cdc875510d1 ServerContext::DecodeDicomFrame() Sebastien Jodogne <s.jodogne@gmail.com> parents: 3913 diff changeset	1772 {
3931 e6606d3ec892 new configuration option: BuiltinDecoderTranscoderOrder Sebastien Jodogne <s.jodogne@gmail.com> parents: 3930 diff changeset	1773 if (builtinDecoderTranscoderOrder_ == BuiltinDecoderTranscoderOrder_Before)
e6606d3ec892 new configuration option: BuiltinDecoderTranscoderOrder Sebastien Jodogne <s.jodogne@gmail.com> parents: 3930 diff changeset	1774 {
e6606d3ec892 new configuration option: BuiltinDecoderTranscoderOrder Sebastien Jodogne <s.jodogne@gmail.com> parents: 3930 diff changeset	1775 // Use Orthanc's built-in decoder, using the cache to speed-up
e6606d3ec892 new configuration option: BuiltinDecoderTranscoderOrder Sebastien Jodogne <s.jodogne@gmail.com> parents: 3930 diff changeset	1776 // things on multi-frame images
4265 f9eaf14d3d19 Fix decoding sequence if "BuiltinDecoderTranscoderOrder" is "Before" Sebastien Jodogne <s.jodogne@gmail.com> parents: 4218 diff changeset	1777
f9eaf14d3d19 Fix decoding sequence if "BuiltinDecoderTranscoderOrder" is "Before" Sebastien Jodogne <s.jodogne@gmail.com> parents: 4218 diff changeset	1778 std::unique_ptr<ImageAccessor> decoded;
f9eaf14d3d19 Fix decoding sequence if "BuiltinDecoderTranscoderOrder" is "Before" Sebastien Jodogne <s.jodogne@gmail.com> parents: 4218 diff changeset	1779 try
f9eaf14d3d19 Fix decoding sequence if "BuiltinDecoderTranscoderOrder" is "Before" Sebastien Jodogne <s.jodogne@gmail.com> parents: 4218 diff changeset	1780 {
4274 09ed936fd381 cppcheck Sebastien Jodogne <s.jodogne@gmail.com> parents: 4268 diff changeset	1781 ServerContext::DicomCacheLocker locker(*this, publicId);
4265 f9eaf14d3d19 Fix decoding sequence if "BuiltinDecoderTranscoderOrder" is "Before" Sebastien Jodogne <s.jodogne@gmail.com> parents: 4218 diff changeset	1782 decoded.reset(locker.GetDicom().DecodeFrame(frameIndex));
f9eaf14d3d19 Fix decoding sequence if "BuiltinDecoderTranscoderOrder" is "Before" Sebastien Jodogne <s.jodogne@gmail.com> parents: 4218 diff changeset	1783 }
f9eaf14d3d19 Fix decoding sequence if "BuiltinDecoderTranscoderOrder" is "Before" Sebastien Jodogne <s.jodogne@gmail.com> parents: 4218 diff changeset	1784 catch (OrthancException& e)
f9eaf14d3d19 Fix decoding sequence if "BuiltinDecoderTranscoderOrder" is "Before" Sebastien Jodogne <s.jodogne@gmail.com> parents: 4218 diff changeset	1785 {
f9eaf14d3d19 Fix decoding sequence if "BuiltinDecoderTranscoderOrder" is "Before" Sebastien Jodogne <s.jodogne@gmail.com> parents: 4218 diff changeset	1786 }
f9eaf14d3d19 Fix decoding sequence if "BuiltinDecoderTranscoderOrder" is "Before" Sebastien Jodogne <s.jodogne@gmail.com> parents: 4218 diff changeset	1787
3931 e6606d3ec892 new configuration option: BuiltinDecoderTranscoderOrder Sebastien Jodogne <s.jodogne@gmail.com> parents: 3930 diff changeset	1788 if (decoded.get() != NULL)
e6606d3ec892 new configuration option: BuiltinDecoderTranscoderOrder Sebastien Jodogne <s.jodogne@gmail.com> parents: 3930 diff changeset	1789 {
e6606d3ec892 new configuration option: BuiltinDecoderTranscoderOrder Sebastien Jodogne <s.jodogne@gmail.com> parents: 3930 diff changeset	1790 return decoded.release();
e6606d3ec892 new configuration option: BuiltinDecoderTranscoderOrder Sebastien Jodogne <s.jodogne@gmail.com> parents: 3930 diff changeset	1791 }
e6606d3ec892 new configuration option: BuiltinDecoderTranscoderOrder Sebastien Jodogne <s.jodogne@gmail.com> parents: 3930 diff changeset	1792 }
3928 4cdc875510d1 ServerContext::DecodeDicomFrame() Sebastien Jodogne <s.jodogne@gmail.com> parents: 3913 diff changeset	1793
4cdc875510d1 ServerContext::DecodeDicomFrame() Sebastien Jodogne <s.jodogne@gmail.com> parents: 3913 diff changeset	1794 #if ORTHANC_ENABLE_PLUGINS == 1
4cdc875510d1 ServerContext::DecodeDicomFrame() Sebastien Jodogne <s.jodogne@gmail.com> parents: 3913 diff changeset	1795 if (HasPlugins() &&
4cdc875510d1 ServerContext::DecodeDicomFrame() Sebastien Jodogne <s.jodogne@gmail.com> parents: 3913 diff changeset	1796 GetPlugins().HasCustomImageDecoder())
4cdc875510d1 ServerContext::DecodeDicomFrame() Sebastien Jodogne <s.jodogne@gmail.com> parents: 3913 diff changeset	1797 {
4cdc875510d1 ServerContext::DecodeDicomFrame() Sebastien Jodogne <s.jodogne@gmail.com> parents: 3913 diff changeset	1798 // TODO: Store the raw buffer in the DicomCacheLocker
4cdc875510d1 ServerContext::DecodeDicomFrame() Sebastien Jodogne <s.jodogne@gmail.com> parents: 3913 diff changeset	1799 std::string dicomContent;
4cdc875510d1 ServerContext::DecodeDicomFrame() Sebastien Jodogne <s.jodogne@gmail.com> parents: 3913 diff changeset	1800 ReadDicom(dicomContent, publicId);
4265 f9eaf14d3d19 Fix decoding sequence if "BuiltinDecoderTranscoderOrder" is "Before" Sebastien Jodogne <s.jodogne@gmail.com> parents: 4218 diff changeset	1801
f9eaf14d3d19 Fix decoding sequence if "BuiltinDecoderTranscoderOrder" is "Before" Sebastien Jodogne <s.jodogne@gmail.com> parents: 4218 diff changeset	1802 std::unique_ptr<ImageAccessor> decoded;
f9eaf14d3d19 Fix decoding sequence if "BuiltinDecoderTranscoderOrder" is "Before" Sebastien Jodogne <s.jodogne@gmail.com> parents: 4218 diff changeset	1803 try
f9eaf14d3d19 Fix decoding sequence if "BuiltinDecoderTranscoderOrder" is "Before" Sebastien Jodogne <s.jodogne@gmail.com> parents: 4218 diff changeset	1804 {
f9eaf14d3d19 Fix decoding sequence if "BuiltinDecoderTranscoderOrder" is "Before" Sebastien Jodogne <s.jodogne@gmail.com> parents: 4218 diff changeset	1805 decoded.reset(GetPlugins().Decode(dicomContent.c_str(), dicomContent.size(), frameIndex));
f9eaf14d3d19 Fix decoding sequence if "BuiltinDecoderTranscoderOrder" is "Before" Sebastien Jodogne <s.jodogne@gmail.com> parents: 4218 diff changeset	1806 }
f9eaf14d3d19 Fix decoding sequence if "BuiltinDecoderTranscoderOrder" is "Before" Sebastien Jodogne <s.jodogne@gmail.com> parents: 4218 diff changeset	1807 catch (OrthancException& e)
f9eaf14d3d19 Fix decoding sequence if "BuiltinDecoderTranscoderOrder" is "Before" Sebastien Jodogne <s.jodogne@gmail.com> parents: 4218 diff changeset	1808 {
f9eaf14d3d19 Fix decoding sequence if "BuiltinDecoderTranscoderOrder" is "Before" Sebastien Jodogne <s.jodogne@gmail.com> parents: 4218 diff changeset	1809 }
f9eaf14d3d19 Fix decoding sequence if "BuiltinDecoderTranscoderOrder" is "Before" Sebastien Jodogne <s.jodogne@gmail.com> parents: 4218 diff changeset	1810
3928 4cdc875510d1 ServerContext::DecodeDicomFrame() Sebastien Jodogne <s.jodogne@gmail.com> parents: 3913 diff changeset	1811 if (decoded.get() != NULL)
4cdc875510d1 ServerContext::DecodeDicomFrame() Sebastien Jodogne <s.jodogne@gmail.com> parents: 3913 diff changeset	1812 {
4cdc875510d1 ServerContext::DecodeDicomFrame() Sebastien Jodogne <s.jodogne@gmail.com> parents: 3913 diff changeset	1813 return decoded.release();
4cdc875510d1 ServerContext::DecodeDicomFrame() Sebastien Jodogne <s.jodogne@gmail.com> parents: 3913 diff changeset	1814 }
3931 e6606d3ec892 new configuration option: BuiltinDecoderTranscoderOrder Sebastien Jodogne <s.jodogne@gmail.com> parents: 3930 diff changeset	1815 else if (builtinDecoderTranscoderOrder_ == BuiltinDecoderTranscoderOrder_After)
3928 4cdc875510d1 ServerContext::DecodeDicomFrame() Sebastien Jodogne <s.jodogne@gmail.com> parents: 3913 diff changeset	1816 {
4cdc875510d1 ServerContext::DecodeDicomFrame() Sebastien Jodogne <s.jodogne@gmail.com> parents: 3913 diff changeset	1817 LOG(INFO) << "The installed image decoding plugins cannot handle an image, "
3930 b99acc213937 transcoder plugins and GDCM transcoding are working Sebastien Jodogne <s.jodogne@gmail.com> parents: 3928 diff changeset	1818 << "fallback to the built-in DCMTK decoder";
3928 4cdc875510d1 ServerContext::DecodeDicomFrame() Sebastien Jodogne <s.jodogne@gmail.com> parents: 3913 diff changeset	1819 }
4cdc875510d1 ServerContext::DecodeDicomFrame() Sebastien Jodogne <s.jodogne@gmail.com> parents: 3913 diff changeset	1820 }
4cdc875510d1 ServerContext::DecodeDicomFrame() Sebastien Jodogne <s.jodogne@gmail.com> parents: 3913 diff changeset	1821 #endif
4cdc875510d1 ServerContext::DecodeDicomFrame() Sebastien Jodogne <s.jodogne@gmail.com> parents: 3913 diff changeset	1822
3931 e6606d3ec892 new configuration option: BuiltinDecoderTranscoderOrder Sebastien Jodogne <s.jodogne@gmail.com> parents: 3930 diff changeset	1823 if (builtinDecoderTranscoderOrder_ == BuiltinDecoderTranscoderOrder_After)
3928 4cdc875510d1 ServerContext::DecodeDicomFrame() Sebastien Jodogne <s.jodogne@gmail.com> parents: 3913 diff changeset	1824 {
4cdc875510d1 ServerContext::DecodeDicomFrame() Sebastien Jodogne <s.jodogne@gmail.com> parents: 3913 diff changeset	1825 ServerContext::DicomCacheLocker locker(*this, publicId);
4203 4d42408da117 improving const-correctness in ParsedDicomFile Sebastien Jodogne <s.jodogne@gmail.com> parents: 4196 diff changeset	1826 return locker.GetDicom().DecodeFrame(frameIndex);
3928 4cdc875510d1 ServerContext::DecodeDicomFrame() Sebastien Jodogne <s.jodogne@gmail.com> parents: 3913 diff changeset	1827 }
3931 e6606d3ec892 new configuration option: BuiltinDecoderTranscoderOrder Sebastien Jodogne <s.jodogne@gmail.com> parents: 3930 diff changeset	1828 else
e6606d3ec892 new configuration option: BuiltinDecoderTranscoderOrder Sebastien Jodogne <s.jodogne@gmail.com> parents: 3930 diff changeset	1829 {
e6606d3ec892 new configuration option: BuiltinDecoderTranscoderOrder Sebastien Jodogne <s.jodogne@gmail.com> parents: 3930 diff changeset	1830 return NULL; // Built-in decoder is disabled
e6606d3ec892 new configuration option: BuiltinDecoderTranscoderOrder Sebastien Jodogne <s.jodogne@gmail.com> parents: 3930 diff changeset	1831 }
3928 4cdc875510d1 ServerContext::DecodeDicomFrame() Sebastien Jodogne <s.jodogne@gmail.com> parents: 3913 diff changeset	1832 }
4cdc875510d1 ServerContext::DecodeDicomFrame() Sebastien Jodogne <s.jodogne@gmail.com> parents: 3913 diff changeset	1833
4cdc875510d1 ServerContext::DecodeDicomFrame() Sebastien Jodogne <s.jodogne@gmail.com> parents: 3913 diff changeset	1834
4cdc875510d1 ServerContext::DecodeDicomFrame() Sebastien Jodogne <s.jodogne@gmail.com> parents: 3913 diff changeset	1835 ImageAccessor* ServerContext::DecodeDicomFrame(const DicomInstanceToStore& dicom,
4cdc875510d1 ServerContext::DecodeDicomFrame() Sebastien Jodogne <s.jodogne@gmail.com> parents: 3913 diff changeset	1836 unsigned int frameIndex)
4cdc875510d1 ServerContext::DecodeDicomFrame() Sebastien Jodogne <s.jodogne@gmail.com> parents: 3913 diff changeset	1837 {
3931 e6606d3ec892 new configuration option: BuiltinDecoderTranscoderOrder Sebastien Jodogne <s.jodogne@gmail.com> parents: 3930 diff changeset	1838 if (builtinDecoderTranscoderOrder_ == BuiltinDecoderTranscoderOrder_Before)
e6606d3ec892 new configuration option: BuiltinDecoderTranscoderOrder Sebastien Jodogne <s.jodogne@gmail.com> parents: 3930 diff changeset	1839 {
4265 f9eaf14d3d19 Fix decoding sequence if "BuiltinDecoderTranscoderOrder" is "Before" Sebastien Jodogne <s.jodogne@gmail.com> parents: 4218 diff changeset	1840 std::unique_ptr<ImageAccessor> decoded;
f9eaf14d3d19 Fix decoding sequence if "BuiltinDecoderTranscoderOrder" is "Before" Sebastien Jodogne <s.jodogne@gmail.com> parents: 4218 diff changeset	1841 try
f9eaf14d3d19 Fix decoding sequence if "BuiltinDecoderTranscoderOrder" is "Before" Sebastien Jodogne <s.jodogne@gmail.com> parents: 4218 diff changeset	1842 {
4507 b4c58795f3a8 widening the use of DicomTransferSyntax enum Sebastien Jodogne <s.jodogne@gmail.com> parents: 4506 diff changeset	1843 decoded.reset(dicom.DecodeFrame(frameIndex));
4265 f9eaf14d3d19 Fix decoding sequence if "BuiltinDecoderTranscoderOrder" is "Before" Sebastien Jodogne <s.jodogne@gmail.com> parents: 4218 diff changeset	1844 }
f9eaf14d3d19 Fix decoding sequence if "BuiltinDecoderTranscoderOrder" is "Before" Sebastien Jodogne <s.jodogne@gmail.com> parents: 4218 diff changeset	1845 catch (OrthancException& e)
f9eaf14d3d19 Fix decoding sequence if "BuiltinDecoderTranscoderOrder" is "Before" Sebastien Jodogne <s.jodogne@gmail.com> parents: 4218 diff changeset	1846 {
f9eaf14d3d19 Fix decoding sequence if "BuiltinDecoderTranscoderOrder" is "Before" Sebastien Jodogne <s.jodogne@gmail.com> parents: 4218 diff changeset	1847 }
f9eaf14d3d19 Fix decoding sequence if "BuiltinDecoderTranscoderOrder" is "Before" Sebastien Jodogne <s.jodogne@gmail.com> parents: 4218 diff changeset	1848
3931 e6606d3ec892 new configuration option: BuiltinDecoderTranscoderOrder Sebastien Jodogne <s.jodogne@gmail.com> parents: 3930 diff changeset	1849 if (decoded.get() != NULL)
e6606d3ec892 new configuration option: BuiltinDecoderTranscoderOrder Sebastien Jodogne <s.jodogne@gmail.com> parents: 3930 diff changeset	1850 {
e6606d3ec892 new configuration option: BuiltinDecoderTranscoderOrder Sebastien Jodogne <s.jodogne@gmail.com> parents: 3930 diff changeset	1851 return decoded.release();
e6606d3ec892 new configuration option: BuiltinDecoderTranscoderOrder Sebastien Jodogne <s.jodogne@gmail.com> parents: 3930 diff changeset	1852 }
e6606d3ec892 new configuration option: BuiltinDecoderTranscoderOrder Sebastien Jodogne <s.jodogne@gmail.com> parents: 3930 diff changeset	1853 }
3928 4cdc875510d1 ServerContext::DecodeDicomFrame() Sebastien Jodogne <s.jodogne@gmail.com> parents: 3913 diff changeset	1854
4cdc875510d1 ServerContext::DecodeDicomFrame() Sebastien Jodogne <s.jodogne@gmail.com> parents: 3913 diff changeset	1855 #if ORTHANC_ENABLE_PLUGINS == 1
4cdc875510d1 ServerContext::DecodeDicomFrame() Sebastien Jodogne <s.jodogne@gmail.com> parents: 3913 diff changeset	1856 if (HasPlugins() &&
4cdc875510d1 ServerContext::DecodeDicomFrame() Sebastien Jodogne <s.jodogne@gmail.com> parents: 3913 diff changeset	1857 GetPlugins().HasCustomImageDecoder())
4cdc875510d1 ServerContext::DecodeDicomFrame() Sebastien Jodogne <s.jodogne@gmail.com> parents: 3913 diff changeset	1858 {
4265 f9eaf14d3d19 Fix decoding sequence if "BuiltinDecoderTranscoderOrder" is "Before" Sebastien Jodogne <s.jodogne@gmail.com> parents: 4218 diff changeset	1859 std::unique_ptr<ImageAccessor> decoded;
f9eaf14d3d19 Fix decoding sequence if "BuiltinDecoderTranscoderOrder" is "Before" Sebastien Jodogne <s.jodogne@gmail.com> parents: 4218 diff changeset	1860 try
f9eaf14d3d19 Fix decoding sequence if "BuiltinDecoderTranscoderOrder" is "Before" Sebastien Jodogne <s.jodogne@gmail.com> parents: 4218 diff changeset	1861 {
f9eaf14d3d19 Fix decoding sequence if "BuiltinDecoderTranscoderOrder" is "Before" Sebastien Jodogne <s.jodogne@gmail.com> parents: 4218 diff changeset	1862 decoded.reset(GetPlugins().Decode(dicom.GetBufferData(), dicom.GetBufferSize(), frameIndex));
f9eaf14d3d19 Fix decoding sequence if "BuiltinDecoderTranscoderOrder" is "Before" Sebastien Jodogne <s.jodogne@gmail.com> parents: 4218 diff changeset	1863 }
f9eaf14d3d19 Fix decoding sequence if "BuiltinDecoderTranscoderOrder" is "Before" Sebastien Jodogne <s.jodogne@gmail.com> parents: 4218 diff changeset	1864 catch (OrthancException& e)
f9eaf14d3d19 Fix decoding sequence if "BuiltinDecoderTranscoderOrder" is "Before" Sebastien Jodogne <s.jodogne@gmail.com> parents: 4218 diff changeset	1865 {
f9eaf14d3d19 Fix decoding sequence if "BuiltinDecoderTranscoderOrder" is "Before" Sebastien Jodogne <s.jodogne@gmail.com> parents: 4218 diff changeset	1866 }
f9eaf14d3d19 Fix decoding sequence if "BuiltinDecoderTranscoderOrder" is "Before" Sebastien Jodogne <s.jodogne@gmail.com> parents: 4218 diff changeset	1867
3928 4cdc875510d1 ServerContext::DecodeDicomFrame() Sebastien Jodogne <s.jodogne@gmail.com> parents: 3913 diff changeset	1868 if (decoded.get() != NULL)
4cdc875510d1 ServerContext::DecodeDicomFrame() Sebastien Jodogne <s.jodogne@gmail.com> parents: 3913 diff changeset	1869 {
4cdc875510d1 ServerContext::DecodeDicomFrame() Sebastien Jodogne <s.jodogne@gmail.com> parents: 3913 diff changeset	1870 return decoded.release();
4cdc875510d1 ServerContext::DecodeDicomFrame() Sebastien Jodogne <s.jodogne@gmail.com> parents: 3913 diff changeset	1871 }
3931 e6606d3ec892 new configuration option: BuiltinDecoderTranscoderOrder Sebastien Jodogne <s.jodogne@gmail.com> parents: 3930 diff changeset	1872 else if (builtinDecoderTranscoderOrder_ == BuiltinDecoderTranscoderOrder_After)
3928 4cdc875510d1 ServerContext::DecodeDicomFrame() Sebastien Jodogne <s.jodogne@gmail.com> parents: 3913 diff changeset	1873 {
4cdc875510d1 ServerContext::DecodeDicomFrame() Sebastien Jodogne <s.jodogne@gmail.com> parents: 3913 diff changeset	1874 LOG(INFO) << "The installed image decoding plugins cannot handle an image, "
3930 b99acc213937 transcoder plugins and GDCM transcoding are working Sebastien Jodogne <s.jodogne@gmail.com> parents: 3928 diff changeset	1875 << "fallback to the built-in DCMTK decoder";
3928 4cdc875510d1 ServerContext::DecodeDicomFrame() Sebastien Jodogne <s.jodogne@gmail.com> parents: 3913 diff changeset	1876 }
4cdc875510d1 ServerContext::DecodeDicomFrame() Sebastien Jodogne <s.jodogne@gmail.com> parents: 3913 diff changeset	1877 }
4cdc875510d1 ServerContext::DecodeDicomFrame() Sebastien Jodogne <s.jodogne@gmail.com> parents: 3913 diff changeset	1878 #endif
4cdc875510d1 ServerContext::DecodeDicomFrame() Sebastien Jodogne <s.jodogne@gmail.com> parents: 3913 diff changeset	1879
3931 e6606d3ec892 new configuration option: BuiltinDecoderTranscoderOrder Sebastien Jodogne <s.jodogne@gmail.com> parents: 3930 diff changeset	1880 if (builtinDecoderTranscoderOrder_ == BuiltinDecoderTranscoderOrder_After)
e6606d3ec892 new configuration option: BuiltinDecoderTranscoderOrder Sebastien Jodogne <s.jodogne@gmail.com> parents: 3930 diff changeset	1881 {
4507 b4c58795f3a8 widening the use of DicomTransferSyntax enum Sebastien Jodogne <s.jodogne@gmail.com> parents: 4506 diff changeset	1882 return dicom.DecodeFrame(frameIndex);
3931 e6606d3ec892 new configuration option: BuiltinDecoderTranscoderOrder Sebastien Jodogne <s.jodogne@gmail.com> parents: 3930 diff changeset	1883 }
e6606d3ec892 new configuration option: BuiltinDecoderTranscoderOrder Sebastien Jodogne <s.jodogne@gmail.com> parents: 3930 diff changeset	1884 else
e6606d3ec892 new configuration option: BuiltinDecoderTranscoderOrder Sebastien Jodogne <s.jodogne@gmail.com> parents: 3930 diff changeset	1885 {
e6606d3ec892 new configuration option: BuiltinDecoderTranscoderOrder Sebastien Jodogne <s.jodogne@gmail.com> parents: 3930 diff changeset	1886 return NULL;
e6606d3ec892 new configuration option: BuiltinDecoderTranscoderOrder Sebastien Jodogne <s.jodogne@gmail.com> parents: 3930 diff changeset	1887 }
3928 4cdc875510d1 ServerContext::DecodeDicomFrame() Sebastien Jodogne <s.jodogne@gmail.com> parents: 3913 diff changeset	1888 }
4cdc875510d1 ServerContext::DecodeDicomFrame() Sebastien Jodogne <s.jodogne@gmail.com> parents: 3913 diff changeset	1889
4cdc875510d1 ServerContext::DecodeDicomFrame() Sebastien Jodogne <s.jodogne@gmail.com> parents: 3913 diff changeset	1890
3980 e42f5445d20d Fix decoding of DICOM images for plugins Sebastien Jodogne <s.jodogne@gmail.com> parents: 3951 diff changeset	1891 ImageAccessor* ServerContext::DecodeDicomFrame(const void* dicom,
e42f5445d20d Fix decoding of DICOM images for plugins Sebastien Jodogne <s.jodogne@gmail.com> parents: 3951 diff changeset	1892 size_t size,
e42f5445d20d Fix decoding of DICOM images for plugins Sebastien Jodogne <s.jodogne@gmail.com> parents: 3951 diff changeset	1893 unsigned int frameIndex)
e42f5445d20d Fix decoding of DICOM images for plugins Sebastien Jodogne <s.jodogne@gmail.com> parents: 3951 diff changeset	1894 {
4508 8f9090b137f1 Optimization in C-STORE SCP by avoiding an unnecessary DICOM parsing Sebastien Jodogne <s.jodogne@gmail.com> parents: 4507 diff changeset	1895 std::unique_ptr<DicomInstanceToStore> instance(DicomInstanceToStore::CreateFromBuffer(dicom, size));
8f9090b137f1 Optimization in C-STORE SCP by avoiding an unnecessary DICOM parsing Sebastien Jodogne <s.jodogne@gmail.com> parents: 4507 diff changeset	1896 return DecodeDicomFrame(*instance, frameIndex);
3980 e42f5445d20d Fix decoding of DICOM images for plugins Sebastien Jodogne <s.jodogne@gmail.com> parents: 3951 diff changeset	1897 }
e42f5445d20d Fix decoding of DICOM images for plugins Sebastien Jodogne <s.jodogne@gmail.com> parents: 3951 diff changeset	1898
e42f5445d20d Fix decoding of DICOM images for plugins Sebastien Jodogne <s.jodogne@gmail.com> parents: 3951 diff changeset	1899
3894 8f7ad4989fec transcoding to uncompressed transfer syntaxes over DICOM protocol is implemented Sebastien Jodogne <s.jodogne@gmail.com> parents: 3839 diff changeset	1900 void ServerContext::StoreWithTranscoding(std::string& sopClassUid,
8f7ad4989fec transcoding to uncompressed transfer syntaxes over DICOM protocol is implemented Sebastien Jodogne <s.jodogne@gmail.com> parents: 3839 diff changeset	1901 std::string& sopInstanceUid,
8f7ad4989fec transcoding to uncompressed transfer syntaxes over DICOM protocol is implemented Sebastien Jodogne <s.jodogne@gmail.com> parents: 3839 diff changeset	1902 DicomStoreUserConnection& connection,
8f7ad4989fec transcoding to uncompressed transfer syntaxes over DICOM protocol is implemented Sebastien Jodogne <s.jodogne@gmail.com> parents: 3839 diff changeset	1903 const std::string& dicom,
8f7ad4989fec transcoding to uncompressed transfer syntaxes over DICOM protocol is implemented Sebastien Jodogne <s.jodogne@gmail.com> parents: 3839 diff changeset	1904 bool hasMoveOriginator,
8f7ad4989fec transcoding to uncompressed transfer syntaxes over DICOM protocol is implemented Sebastien Jodogne <s.jodogne@gmail.com> parents: 3839 diff changeset	1905 const std::string& moveOriginatorAet,
8f7ad4989fec transcoding to uncompressed transfer syntaxes over DICOM protocol is implemented Sebastien Jodogne <s.jodogne@gmail.com> parents: 3839 diff changeset	1906 uint16_t moveOriginatorId)
8f7ad4989fec transcoding to uncompressed transfer syntaxes over DICOM protocol is implemented Sebastien Jodogne <s.jodogne@gmail.com> parents: 3839 diff changeset	1907 {
8f7ad4989fec transcoding to uncompressed transfer syntaxes over DICOM protocol is implemented Sebastien Jodogne <s.jodogne@gmail.com> parents: 3839 diff changeset	1908 const void* data = dicom.empty() ? NULL : dicom.c_str();
8f7ad4989fec transcoding to uncompressed transfer syntaxes over DICOM protocol is implemented Sebastien Jodogne <s.jodogne@gmail.com> parents: 3839 diff changeset	1909
3911 0ef7f4528be2 renamed option TranscodingEnabled to TranscodeDicomProtocol Sebastien Jodogne <s.jodogne@gmail.com> parents: 3910 diff changeset	1910 if (!transcodeDicomProtocol_ \|\|
3894 8f7ad4989fec transcoding to uncompressed transfer syntaxes over DICOM protocol is implemented Sebastien Jodogne <s.jodogne@gmail.com> parents: 3839 diff changeset	1911 !connection.GetParameters().GetRemoteModality().IsTranscodingAllowed())
8f7ad4989fec transcoding to uncompressed transfer syntaxes over DICOM protocol is implemented Sebastien Jodogne <s.jodogne@gmail.com> parents: 3839 diff changeset	1912 {
8f7ad4989fec transcoding to uncompressed transfer syntaxes over DICOM protocol is implemented Sebastien Jodogne <s.jodogne@gmail.com> parents: 3839 diff changeset	1913 connection.Store(sopClassUid, sopInstanceUid, data, dicom.size(),
8f7ad4989fec transcoding to uncompressed transfer syntaxes over DICOM protocol is implemented Sebastien Jodogne <s.jodogne@gmail.com> parents: 3839 diff changeset	1914 hasMoveOriginator, moveOriginatorAet, moveOriginatorId);
8f7ad4989fec transcoding to uncompressed transfer syntaxes over DICOM protocol is implemented Sebastien Jodogne <s.jodogne@gmail.com> parents: 3839 diff changeset	1915 }
8f7ad4989fec transcoding to uncompressed transfer syntaxes over DICOM protocol is implemented Sebastien Jodogne <s.jodogne@gmail.com> parents: 3839 diff changeset	1916 else
8f7ad4989fec transcoding to uncompressed transfer syntaxes over DICOM protocol is implemented Sebastien Jodogne <s.jodogne@gmail.com> parents: 3839 diff changeset	1917 {
4465 fe774d8e904b New configuration option: "DicomScuPreferredTransferSyntax" to control transcoding in C-STORE SCU Sebastien Jodogne <s.jodogne@gmail.com> parents: 4460 diff changeset	1918 connection.Transcode(sopClassUid, sopInstanceUid, *this, data, dicom.size(), preferredTransferSyntax_,
3912 7610af1532c3 prototyping automated transcoding of incoming DICOM files Sebastien Jodogne <s.jodogne@gmail.com> parents: 3911 diff changeset	1919 hasMoveOriginator, moveOriginatorAet, moveOriginatorId);
3894 8f7ad4989fec transcoding to uncompressed transfer syntaxes over DICOM protocol is implemented Sebastien Jodogne <s.jodogne@gmail.com> parents: 3839 diff changeset	1920 }
8f7ad4989fec transcoding to uncompressed transfer syntaxes over DICOM protocol is implemented Sebastien Jodogne <s.jodogne@gmail.com> parents: 3839 diff changeset	1921 }
3930 b99acc213937 transcoder plugins and GDCM transcoding are working Sebastien Jodogne <s.jodogne@gmail.com> parents: 3928 diff changeset	1922
b99acc213937 transcoder plugins and GDCM transcoding are working Sebastien Jodogne <s.jodogne@gmail.com> parents: 3928 diff changeset	1923
3944 aae045f802f4 preparing simplified interface for IDicomTranscoder Sebastien Jodogne <s.jodogne@gmail.com> parents: 3941 diff changeset	1924 bool ServerContext::Transcode(DicomImage& target,
aae045f802f4 preparing simplified interface for IDicomTranscoder Sebastien Jodogne <s.jodogne@gmail.com> parents: 3941 diff changeset	1925 DicomImage& source /* in, "GetParsed()" possibly modified */,
aae045f802f4 preparing simplified interface for IDicomTranscoder Sebastien Jodogne <s.jodogne@gmail.com> parents: 3941 diff changeset	1926 const std::set<DicomTransferSyntax>& allowedSyntaxes,
aae045f802f4 preparing simplified interface for IDicomTranscoder Sebastien Jodogne <s.jodogne@gmail.com> parents: 3941 diff changeset	1927 bool allowNewSopInstanceUid)
aae045f802f4 preparing simplified interface for IDicomTranscoder Sebastien Jodogne <s.jodogne@gmail.com> parents: 3941 diff changeset	1928 {
aae045f802f4 preparing simplified interface for IDicomTranscoder Sebastien Jodogne <s.jodogne@gmail.com> parents: 3941 diff changeset	1929 if (builtinDecoderTranscoderOrder_ == BuiltinDecoderTranscoderOrder_Before)
aae045f802f4 preparing simplified interface for IDicomTranscoder Sebastien Jodogne <s.jodogne@gmail.com> parents: 3941 diff changeset	1930 {
3951 5fe8c6d3212e removed useless information "hasSopInstanceUidChanged" Sebastien Jodogne <s.jodogne@gmail.com> parents: 3947 diff changeset	1931 if (dcmtkTranscoder_->Transcode(target, source, allowedSyntaxes, allowNewSopInstanceUid))
3944 aae045f802f4 preparing simplified interface for IDicomTranscoder Sebastien Jodogne <s.jodogne@gmail.com> parents: 3941 diff changeset	1932 {
aae045f802f4 preparing simplified interface for IDicomTranscoder Sebastien Jodogne <s.jodogne@gmail.com> parents: 3941 diff changeset	1933 return true;
aae045f802f4 preparing simplified interface for IDicomTranscoder Sebastien Jodogne <s.jodogne@gmail.com> parents: 3941 diff changeset	1934 }
aae045f802f4 preparing simplified interface for IDicomTranscoder Sebastien Jodogne <s.jodogne@gmail.com> parents: 3941 diff changeset	1935 }
aae045f802f4 preparing simplified interface for IDicomTranscoder Sebastien Jodogne <s.jodogne@gmail.com> parents: 3941 diff changeset	1936
aae045f802f4 preparing simplified interface for IDicomTranscoder Sebastien Jodogne <s.jodogne@gmail.com> parents: 3941 diff changeset	1937 #if ORTHANC_ENABLE_PLUGINS == 1
aae045f802f4 preparing simplified interface for IDicomTranscoder Sebastien Jodogne <s.jodogne@gmail.com> parents: 3941 diff changeset	1938 if (HasPlugins() &&
aae045f802f4 preparing simplified interface for IDicomTranscoder Sebastien Jodogne <s.jodogne@gmail.com> parents: 3941 diff changeset	1939 GetPlugins().HasCustomTranscoder())
aae045f802f4 preparing simplified interface for IDicomTranscoder Sebastien Jodogne <s.jodogne@gmail.com> parents: 3941 diff changeset	1940 {
3951 5fe8c6d3212e removed useless information "hasSopInstanceUidChanged" Sebastien Jodogne <s.jodogne@gmail.com> parents: 3947 diff changeset	1941 if (GetPlugins().Transcode(target, source, allowedSyntaxes, allowNewSopInstanceUid))
3944 aae045f802f4 preparing simplified interface for IDicomTranscoder Sebastien Jodogne <s.jodogne@gmail.com> parents: 3941 diff changeset	1942 {
aae045f802f4 preparing simplified interface for IDicomTranscoder Sebastien Jodogne <s.jodogne@gmail.com> parents: 3941 diff changeset	1943 return true;
aae045f802f4 preparing simplified interface for IDicomTranscoder Sebastien Jodogne <s.jodogne@gmail.com> parents: 3941 diff changeset	1944 }
aae045f802f4 preparing simplified interface for IDicomTranscoder Sebastien Jodogne <s.jodogne@gmail.com> parents: 3941 diff changeset	1945 else if (builtinDecoderTranscoderOrder_ == BuiltinDecoderTranscoderOrder_After)
aae045f802f4 preparing simplified interface for IDicomTranscoder Sebastien Jodogne <s.jodogne@gmail.com> parents: 3941 diff changeset	1946 {
aae045f802f4 preparing simplified interface for IDicomTranscoder Sebastien Jodogne <s.jodogne@gmail.com> parents: 3941 diff changeset	1947 LOG(INFO) << "The installed transcoding plugins cannot handle an image, "
aae045f802f4 preparing simplified interface for IDicomTranscoder Sebastien Jodogne <s.jodogne@gmail.com> parents: 3941 diff changeset	1948 << "fallback to the built-in DCMTK transcoder";
aae045f802f4 preparing simplified interface for IDicomTranscoder Sebastien Jodogne <s.jodogne@gmail.com> parents: 3941 diff changeset	1949 }
aae045f802f4 preparing simplified interface for IDicomTranscoder Sebastien Jodogne <s.jodogne@gmail.com> parents: 3941 diff changeset	1950 }
aae045f802f4 preparing simplified interface for IDicomTranscoder Sebastien Jodogne <s.jodogne@gmail.com> parents: 3941 diff changeset	1951 #endif
aae045f802f4 preparing simplified interface for IDicomTranscoder Sebastien Jodogne <s.jodogne@gmail.com> parents: 3941 diff changeset	1952
aae045f802f4 preparing simplified interface for IDicomTranscoder Sebastien Jodogne <s.jodogne@gmail.com> parents: 3941 diff changeset	1953 if (builtinDecoderTranscoderOrder_ == BuiltinDecoderTranscoderOrder_After)
aae045f802f4 preparing simplified interface for IDicomTranscoder Sebastien Jodogne <s.jodogne@gmail.com> parents: 3941 diff changeset	1954 {
3951 5fe8c6d3212e removed useless information "hasSopInstanceUidChanged" Sebastien Jodogne <s.jodogne@gmail.com> parents: 3947 diff changeset	1955 return dcmtkTranscoder_->Transcode(target, source, allowedSyntaxes, allowNewSopInstanceUid);
3944 aae045f802f4 preparing simplified interface for IDicomTranscoder Sebastien Jodogne <s.jodogne@gmail.com> parents: 3941 diff changeset	1956 }
aae045f802f4 preparing simplified interface for IDicomTranscoder Sebastien Jodogne <s.jodogne@gmail.com> parents: 3941 diff changeset	1957 else
aae045f802f4 preparing simplified interface for IDicomTranscoder Sebastien Jodogne <s.jodogne@gmail.com> parents: 3941 diff changeset	1958 {
aae045f802f4 preparing simplified interface for IDicomTranscoder Sebastien Jodogne <s.jodogne@gmail.com> parents: 3941 diff changeset	1959 return false;
aae045f802f4 preparing simplified interface for IDicomTranscoder Sebastien Jodogne <s.jodogne@gmail.com> parents: 3941 diff changeset	1960 }
aae045f802f4 preparing simplified interface for IDicomTranscoder Sebastien Jodogne <s.jodogne@gmail.com> parents: 3941 diff changeset	1961 }
4375 208029732d51 New config option "DeidentifyDimseQueryLogs" Mark Poscablo <Mark.Poscablo@varian.com> parents: 4274 diff changeset	1962
4376 b002f9abe802 review of changeset 4375:208029732d51 Sebastien Jodogne <s.jodogne@gmail.com> parents: 4375 diff changeset	1963 const std::string& ServerContext::GetDeidentifiedContent(const DicomElement &element) const
4375 208029732d51 New config option "DeidentifyDimseQueryLogs" Mark Poscablo <Mark.Poscablo@varian.com> parents: 4274 diff changeset	1964 {
208029732d51 New config option "DeidentifyDimseQueryLogs" Mark Poscablo <Mark.Poscablo@varian.com> parents: 4274 diff changeset	1965 static const std::string redactedContent = "* POTENTIAL PHI *";
5044 6fed78e13233 Refactored DicomMap to handle sequences when needed Alain Mazy <am@osimis.io> parents: 5043 diff changeset	1966 static const std::string emptyContent = "";
4375 208029732d51 New config option "DeidentifyDimseQueryLogs" Mark Poscablo <Mark.Poscablo@varian.com> parents: 4274 diff changeset	1967
208029732d51 New config option "DeidentifyDimseQueryLogs" Mark Poscablo <Mark.Poscablo@varian.com> parents: 4274 diff changeset	1968 const DicomTag& tag = element.GetTag();
5044 6fed78e13233 Refactored DicomMap to handle sequences when needed Alain Mazy <am@osimis.io> parents: 5043 diff changeset	1969 if (element.GetValue().IsSequence())
6fed78e13233 Refactored DicomMap to handle sequences when needed Alain Mazy <am@osimis.io> parents: 5043 diff changeset	1970 {
6fed78e13233 Refactored DicomMap to handle sequences when needed Alain Mazy <am@osimis.io> parents: 5043 diff changeset	1971 return emptyContent;
6fed78e13233 Refactored DicomMap to handle sequences when needed Alain Mazy <am@osimis.io> parents: 5043 diff changeset	1972 }
6fed78e13233 Refactored DicomMap to handle sequences when needed Alain Mazy <am@osimis.io> parents: 5043 diff changeset	1973
4789 51ec061516c9 Fix handling of option "DeidentifyLogs", notably for tags (0010,0010) and (0010,0020) Sebastien Jodogne <s.jodogne@gmail.com> parents: 4752 diff changeset	1974 if (deidentifyLogs_ &&
51ec061516c9 Fix handling of option "DeidentifyLogs", notably for tags (0010,0010) and (0010,0020) Sebastien Jodogne <s.jodogne@gmail.com> parents: 4752 diff changeset	1975 !element.GetValue().GetContent().empty() &&
51ec061516c9 Fix handling of option "DeidentifyLogs", notably for tags (0010,0010) and (0010,0020) Sebastien Jodogne <s.jodogne@gmail.com> parents: 4752 diff changeset	1976 logsDeidentifierRules_.IsAlteredTag(tag))
4375 208029732d51 New config option "DeidentifyDimseQueryLogs" Mark Poscablo <Mark.Poscablo@varian.com> parents: 4274 diff changeset	1977 {
208029732d51 New config option "DeidentifyDimseQueryLogs" Mark Poscablo <Mark.Poscablo@varian.com> parents: 4274 diff changeset	1978 return redactedContent;
208029732d51 New config option "DeidentifyDimseQueryLogs" Mark Poscablo <Mark.Poscablo@varian.com> parents: 4274 diff changeset	1979 }
208029732d51 New config option "DeidentifyDimseQueryLogs" Mark Poscablo <Mark.Poscablo@varian.com> parents: 4274 diff changeset	1980 else
208029732d51 New config option "DeidentifyDimseQueryLogs" Mark Poscablo <Mark.Poscablo@varian.com> parents: 4274 diff changeset	1981 {
208029732d51 New config option "DeidentifyDimseQueryLogs" Mark Poscablo <Mark.Poscablo@varian.com> parents: 4274 diff changeset	1982 return element.GetValue().GetContent();
208029732d51 New config option "DeidentifyDimseQueryLogs" Mark Poscablo <Mark.Poscablo@varian.com> parents: 4274 diff changeset	1983 }
208029732d51 New config option "DeidentifyDimseQueryLogs" Mark Poscablo <Mark.Poscablo@varian.com> parents: 4274 diff changeset	1984 }
4473 68f52897c119 new URIs: /tools/accepted-transfer-syntaxes and /tools/unknown-sop-class-accepted to replace Lua callbacks for transfer syntaxes Sebastien Jodogne <s.jodogne@gmail.com> parents: 4465 diff changeset	1985
68f52897c119 new URIs: /tools/accepted-transfer-syntaxes and /tools/unknown-sop-class-accepted to replace Lua callbacks for transfer syntaxes Sebastien Jodogne <s.jodogne@gmail.com> parents: 4465 diff changeset	1986
68f52897c119 new URIs: /tools/accepted-transfer-syntaxes and /tools/unknown-sop-class-accepted to replace Lua callbacks for transfer syntaxes Sebastien Jodogne <s.jodogne@gmail.com> parents: 4465 diff changeset	1987 void ServerContext::GetAcceptedTransferSyntaxes(std::set<DicomTransferSyntax>& syntaxes)
68f52897c119 new URIs: /tools/accepted-transfer-syntaxes and /tools/unknown-sop-class-accepted to replace Lua callbacks for transfer syntaxes Sebastien Jodogne <s.jodogne@gmail.com> parents: 4465 diff changeset	1988 {
68f52897c119 new URIs: /tools/accepted-transfer-syntaxes and /tools/unknown-sop-class-accepted to replace Lua callbacks for transfer syntaxes Sebastien Jodogne <s.jodogne@gmail.com> parents: 4465 diff changeset	1989 boost::mutex::scoped_lock lock(dynamicOptionsMutex_);
68f52897c119 new URIs: /tools/accepted-transfer-syntaxes and /tools/unknown-sop-class-accepted to replace Lua callbacks for transfer syntaxes Sebastien Jodogne <s.jodogne@gmail.com> parents: 4465 diff changeset	1990 syntaxes = acceptedTransferSyntaxes_;
68f52897c119 new URIs: /tools/accepted-transfer-syntaxes and /tools/unknown-sop-class-accepted to replace Lua callbacks for transfer syntaxes Sebastien Jodogne <s.jodogne@gmail.com> parents: 4465 diff changeset	1991 }
68f52897c119 new URIs: /tools/accepted-transfer-syntaxes and /tools/unknown-sop-class-accepted to replace Lua callbacks for transfer syntaxes Sebastien Jodogne <s.jodogne@gmail.com> parents: 4465 diff changeset	1992
68f52897c119 new URIs: /tools/accepted-transfer-syntaxes and /tools/unknown-sop-class-accepted to replace Lua callbacks for transfer syntaxes Sebastien Jodogne <s.jodogne@gmail.com> parents: 4465 diff changeset	1993
68f52897c119 new URIs: /tools/accepted-transfer-syntaxes and /tools/unknown-sop-class-accepted to replace Lua callbacks for transfer syntaxes Sebastien Jodogne <s.jodogne@gmail.com> parents: 4465 diff changeset	1994 void ServerContext::SetAcceptedTransferSyntaxes(const std::set<DicomTransferSyntax>& syntaxes)
68f52897c119 new URIs: /tools/accepted-transfer-syntaxes and /tools/unknown-sop-class-accepted to replace Lua callbacks for transfer syntaxes Sebastien Jodogne <s.jodogne@gmail.com> parents: 4465 diff changeset	1995 {
68f52897c119 new URIs: /tools/accepted-transfer-syntaxes and /tools/unknown-sop-class-accepted to replace Lua callbacks for transfer syntaxes Sebastien Jodogne <s.jodogne@gmail.com> parents: 4465 diff changeset	1996 boost::mutex::scoped_lock lock(dynamicOptionsMutex_);
68f52897c119 new URIs: /tools/accepted-transfer-syntaxes and /tools/unknown-sop-class-accepted to replace Lua callbacks for transfer syntaxes Sebastien Jodogne <s.jodogne@gmail.com> parents: 4465 diff changeset	1997 acceptedTransferSyntaxes_ = syntaxes;
68f52897c119 new URIs: /tools/accepted-transfer-syntaxes and /tools/unknown-sop-class-accepted to replace Lua callbacks for transfer syntaxes Sebastien Jodogne <s.jodogne@gmail.com> parents: 4465 diff changeset	1998 }
68f52897c119 new URIs: /tools/accepted-transfer-syntaxes and /tools/unknown-sop-class-accepted to replace Lua callbacks for transfer syntaxes Sebastien Jodogne <s.jodogne@gmail.com> parents: 4465 diff changeset	1999
68f52897c119 new URIs: /tools/accepted-transfer-syntaxes and /tools/unknown-sop-class-accepted to replace Lua callbacks for transfer syntaxes Sebastien Jodogne <s.jodogne@gmail.com> parents: 4465 diff changeset	2000
68f52897c119 new URIs: /tools/accepted-transfer-syntaxes and /tools/unknown-sop-class-accepted to replace Lua callbacks for transfer syntaxes Sebastien Jodogne <s.jodogne@gmail.com> parents: 4465 diff changeset	2001 bool ServerContext::IsUnknownSopClassAccepted()
68f52897c119 new URIs: /tools/accepted-transfer-syntaxes and /tools/unknown-sop-class-accepted to replace Lua callbacks for transfer syntaxes Sebastien Jodogne <s.jodogne@gmail.com> parents: 4465 diff changeset	2002 {
68f52897c119 new URIs: /tools/accepted-transfer-syntaxes and /tools/unknown-sop-class-accepted to replace Lua callbacks for transfer syntaxes Sebastien Jodogne <s.jodogne@gmail.com> parents: 4465 diff changeset	2003 boost::mutex::scoped_lock lock(dynamicOptionsMutex_);
68f52897c119 new URIs: /tools/accepted-transfer-syntaxes and /tools/unknown-sop-class-accepted to replace Lua callbacks for transfer syntaxes Sebastien Jodogne <s.jodogne@gmail.com> parents: 4465 diff changeset	2004 return isUnknownSopClassAccepted_;
68f52897c119 new URIs: /tools/accepted-transfer-syntaxes and /tools/unknown-sop-class-accepted to replace Lua callbacks for transfer syntaxes Sebastien Jodogne <s.jodogne@gmail.com> parents: 4465 diff changeset	2005 }
68f52897c119 new URIs: /tools/accepted-transfer-syntaxes and /tools/unknown-sop-class-accepted to replace Lua callbacks for transfer syntaxes Sebastien Jodogne <s.jodogne@gmail.com> parents: 4465 diff changeset	2006
68f52897c119 new URIs: /tools/accepted-transfer-syntaxes and /tools/unknown-sop-class-accepted to replace Lua callbacks for transfer syntaxes Sebastien Jodogne <s.jodogne@gmail.com> parents: 4465 diff changeset	2007
68f52897c119 new URIs: /tools/accepted-transfer-syntaxes and /tools/unknown-sop-class-accepted to replace Lua callbacks for transfer syntaxes Sebastien Jodogne <s.jodogne@gmail.com> parents: 4465 diff changeset	2008 void ServerContext::SetUnknownSopClassAccepted(bool accepted)
68f52897c119 new URIs: /tools/accepted-transfer-syntaxes and /tools/unknown-sop-class-accepted to replace Lua callbacks for transfer syntaxes Sebastien Jodogne <s.jodogne@gmail.com> parents: 4465 diff changeset	2009 {
68f52897c119 new URIs: /tools/accepted-transfer-syntaxes and /tools/unknown-sop-class-accepted to replace Lua callbacks for transfer syntaxes Sebastien Jodogne <s.jodogne@gmail.com> parents: 4465 diff changeset	2010 boost::mutex::scoped_lock lock(dynamicOptionsMutex_);
68f52897c119 new URIs: /tools/accepted-transfer-syntaxes and /tools/unknown-sop-class-accepted to replace Lua callbacks for transfer syntaxes Sebastien Jodogne <s.jodogne@gmail.com> parents: 4465 diff changeset	2011 isUnknownSopClassAccepted_ = accepted;
68f52897c119 new URIs: /tools/accepted-transfer-syntaxes and /tools/unknown-sop-class-accepted to replace Lua callbacks for transfer syntaxes Sebastien Jodogne <s.jodogne@gmail.com> parents: 4465 diff changeset	2012 }
4935 acd3f72e2a21 split ExpandResource in 2: read from DB and serialize to json. This will allow us to merge requested tags from both the DB and the file system Alain Mazy <am@osimis.io> parents: 4921 diff changeset	2013
acd3f72e2a21 split ExpandResource in 2: read from DB and serialize to json. This will allow us to merge requested tags from both the DB and the file system Alain Mazy <am@osimis.io> parents: 4921 diff changeset	2014
acd3f72e2a21 split ExpandResource in 2: read from DB and serialize to json. This will allow us to merge requested tags from both the DB and the file system Alain Mazy <am@osimis.io> parents: 4921 diff changeset	2015 static void SerializeExpandedResource(Json::Value& target,
acd3f72e2a21 split ExpandResource in 2: read from DB and serialize to json. This will allow us to merge requested tags from both the DB and the file system Alain Mazy <am@osimis.io> parents: 4921 diff changeset	2016 const ExpandedResource& resource,
4936 8422e4f99a18 Handling RequestedTags in ExpandResource -> read parent main dicom tags if required. Not yet getting missing tags from file. Integration tests ok Alain Mazy <am@osimis.io> parents: 4935 diff changeset	2017 DicomToJsonFormat format,
8422e4f99a18 Handling RequestedTags in ExpandResource -> read parent main dicom tags if required. Not yet getting missing tags from file. Integration tests ok Alain Mazy <am@osimis.io> parents: 4935 diff changeset	2018 const std::set<DicomTag>& requestedTags)
4935 acd3f72e2a21 split ExpandResource in 2: read from DB and serialize to json. This will allow us to merge requested tags from both the DB and the file system Alain Mazy <am@osimis.io> parents: 4921 diff changeset	2019 {
acd3f72e2a21 split ExpandResource in 2: read from DB and serialize to json. This will allow us to merge requested tags from both the DB and the file system Alain Mazy <am@osimis.io> parents: 4921 diff changeset	2020 target = Json::objectValue;
acd3f72e2a21 split ExpandResource in 2: read from DB and serialize to json. This will allow us to merge requested tags from both the DB and the file system Alain Mazy <am@osimis.io> parents: 4921 diff changeset	2021
5222 3a61fd50f804 starting refactoring ExpandedResource Sebastien Jodogne <s.jodogne@gmail.com> parents: 5221 diff changeset	2022 target["Type"] = GetResourceTypeText(resource.GetLevel(), false, true);
3a61fd50f804 starting refactoring ExpandedResource Sebastien Jodogne <s.jodogne@gmail.com> parents: 5221 diff changeset	2023 target["ID"] = resource.GetPublicId();
4935 acd3f72e2a21 split ExpandResource in 2: read from DB and serialize to json. This will allow us to merge requested tags from both the DB and the file system Alain Mazy <am@osimis.io> parents: 4921 diff changeset	2024
5222 3a61fd50f804 starting refactoring ExpandedResource Sebastien Jodogne <s.jodogne@gmail.com> parents: 5221 diff changeset	2025 switch (resource.GetLevel())
4935 acd3f72e2a21 split ExpandResource in 2: read from DB and serialize to json. This will allow us to merge requested tags from both the DB and the file system Alain Mazy <am@osimis.io> parents: 4921 diff changeset	2026 {
acd3f72e2a21 split ExpandResource in 2: read from DB and serialize to json. This will allow us to merge requested tags from both the DB and the file system Alain Mazy <am@osimis.io> parents: 4921 diff changeset	2027 case ResourceType_Patient:
acd3f72e2a21 split ExpandResource in 2: read from DB and serialize to json. This will allow us to merge requested tags from both the DB and the file system Alain Mazy <am@osimis.io> parents: 4921 diff changeset	2028 break;
acd3f72e2a21 split ExpandResource in 2: read from DB and serialize to json. This will allow us to merge requested tags from both the DB and the file system Alain Mazy <am@osimis.io> parents: 4921 diff changeset	2029
acd3f72e2a21 split ExpandResource in 2: read from DB and serialize to json. This will allow us to merge requested tags from both the DB and the file system Alain Mazy <am@osimis.io> parents: 4921 diff changeset	2030 case ResourceType_Study:
acd3f72e2a21 split ExpandResource in 2: read from DB and serialize to json. This will allow us to merge requested tags from both the DB and the file system Alain Mazy <am@osimis.io> parents: 4921 diff changeset	2031 target["ParentPatient"] = resource.parentId_;
acd3f72e2a21 split ExpandResource in 2: read from DB and serialize to json. This will allow us to merge requested tags from both the DB and the file system Alain Mazy <am@osimis.io> parents: 4921 diff changeset	2032 break;
acd3f72e2a21 split ExpandResource in 2: read from DB and serialize to json. This will allow us to merge requested tags from both the DB and the file system Alain Mazy <am@osimis.io> parents: 4921 diff changeset	2033
acd3f72e2a21 split ExpandResource in 2: read from DB and serialize to json. This will allow us to merge requested tags from both the DB and the file system Alain Mazy <am@osimis.io> parents: 4921 diff changeset	2034 case ResourceType_Series:
acd3f72e2a21 split ExpandResource in 2: read from DB and serialize to json. This will allow us to merge requested tags from both the DB and the file system Alain Mazy <am@osimis.io> parents: 4921 diff changeset	2035 target["ParentStudy"] = resource.parentId_;
acd3f72e2a21 split ExpandResource in 2: read from DB and serialize to json. This will allow us to merge requested tags from both the DB and the file system Alain Mazy <am@osimis.io> parents: 4921 diff changeset	2036 break;
acd3f72e2a21 split ExpandResource in 2: read from DB and serialize to json. This will allow us to merge requested tags from both the DB and the file system Alain Mazy <am@osimis.io> parents: 4921 diff changeset	2037
acd3f72e2a21 split ExpandResource in 2: read from DB and serialize to json. This will allow us to merge requested tags from both the DB and the file system Alain Mazy <am@osimis.io> parents: 4921 diff changeset	2038 case ResourceType_Instance:
acd3f72e2a21 split ExpandResource in 2: read from DB and serialize to json. This will allow us to merge requested tags from both the DB and the file system Alain Mazy <am@osimis.io> parents: 4921 diff changeset	2039 target["ParentSeries"] = resource.parentId_;
acd3f72e2a21 split ExpandResource in 2: read from DB and serialize to json. This will allow us to merge requested tags from both the DB and the file system Alain Mazy <am@osimis.io> parents: 4921 diff changeset	2040 break;
acd3f72e2a21 split ExpandResource in 2: read from DB and serialize to json. This will allow us to merge requested tags from both the DB and the file system Alain Mazy <am@osimis.io> parents: 4921 diff changeset	2041
acd3f72e2a21 split ExpandResource in 2: read from DB and serialize to json. This will allow us to merge requested tags from both the DB and the file system Alain Mazy <am@osimis.io> parents: 4921 diff changeset	2042 default:
acd3f72e2a21 split ExpandResource in 2: read from DB and serialize to json. This will allow us to merge requested tags from both the DB and the file system Alain Mazy <am@osimis.io> parents: 4921 diff changeset	2043 throw OrthancException(ErrorCode_InternalError);
acd3f72e2a21 split ExpandResource in 2: read from DB and serialize to json. This will allow us to merge requested tags from both the DB and the file system Alain Mazy <am@osimis.io> parents: 4921 diff changeset	2044 }
acd3f72e2a21 split ExpandResource in 2: read from DB and serialize to json. This will allow us to merge requested tags from both the DB and the file system Alain Mazy <am@osimis.io> parents: 4921 diff changeset	2045
5222 3a61fd50f804 starting refactoring ExpandedResource Sebastien Jodogne <s.jodogne@gmail.com> parents: 5221 diff changeset	2046 switch (resource.GetLevel())
4935 acd3f72e2a21 split ExpandResource in 2: read from DB and serialize to json. This will allow us to merge requested tags from both the DB and the file system Alain Mazy <am@osimis.io> parents: 4921 diff changeset	2047 {
acd3f72e2a21 split ExpandResource in 2: read from DB and serialize to json. This will allow us to merge requested tags from both the DB and the file system Alain Mazy <am@osimis.io> parents: 4921 diff changeset	2048 case ResourceType_Patient:
acd3f72e2a21 split ExpandResource in 2: read from DB and serialize to json. This will allow us to merge requested tags from both the DB and the file system Alain Mazy <am@osimis.io> parents: 4921 diff changeset	2049 case ResourceType_Study:
acd3f72e2a21 split ExpandResource in 2: read from DB and serialize to json. This will allow us to merge requested tags from both the DB and the file system Alain Mazy <am@osimis.io> parents: 4921 diff changeset	2050 case ResourceType_Series:
acd3f72e2a21 split ExpandResource in 2: read from DB and serialize to json. This will allow us to merge requested tags from both the DB and the file system Alain Mazy <am@osimis.io> parents: 4921 diff changeset	2051 {
acd3f72e2a21 split ExpandResource in 2: read from DB and serialize to json. This will allow us to merge requested tags from both the DB and the file system Alain Mazy <am@osimis.io> parents: 4921 diff changeset	2052 Json::Value c = Json::arrayValue;
acd3f72e2a21 split ExpandResource in 2: read from DB and serialize to json. This will allow us to merge requested tags from both the DB and the file system Alain Mazy <am@osimis.io> parents: 4921 diff changeset	2053
acd3f72e2a21 split ExpandResource in 2: read from DB and serialize to json. This will allow us to merge requested tags from both the DB and the file system Alain Mazy <am@osimis.io> parents: 4921 diff changeset	2054 for (std::list<std::string>::const_iterator
acd3f72e2a21 split ExpandResource in 2: read from DB and serialize to json. This will allow us to merge requested tags from both the DB and the file system Alain Mazy <am@osimis.io> parents: 4921 diff changeset	2055 it = resource.childrenIds_.begin(); it != resource.childrenIds_.end(); ++it)
acd3f72e2a21 split ExpandResource in 2: read from DB and serialize to json. This will allow us to merge requested tags from both the DB and the file system Alain Mazy <am@osimis.io> parents: 4921 diff changeset	2056 {
acd3f72e2a21 split ExpandResource in 2: read from DB and serialize to json. This will allow us to merge requested tags from both the DB and the file system Alain Mazy <am@osimis.io> parents: 4921 diff changeset	2057 c.append(*it);
acd3f72e2a21 split ExpandResource in 2: read from DB and serialize to json. This will allow us to merge requested tags from both the DB and the file system Alain Mazy <am@osimis.io> parents: 4921 diff changeset	2058 }
acd3f72e2a21 split ExpandResource in 2: read from DB and serialize to json. This will allow us to merge requested tags from both the DB and the file system Alain Mazy <am@osimis.io> parents: 4921 diff changeset	2059
5222 3a61fd50f804 starting refactoring ExpandedResource Sebastien Jodogne <s.jodogne@gmail.com> parents: 5221 diff changeset	2060 if (resource.GetLevel() == ResourceType_Patient)
4935 acd3f72e2a21 split ExpandResource in 2: read from DB and serialize to json. This will allow us to merge requested tags from both the DB and the file system Alain Mazy <am@osimis.io> parents: 4921 diff changeset	2061 {
acd3f72e2a21 split ExpandResource in 2: read from DB and serialize to json. This will allow us to merge requested tags from both the DB and the file system Alain Mazy <am@osimis.io> parents: 4921 diff changeset	2062 target["Studies"] = c;
acd3f72e2a21 split ExpandResource in 2: read from DB and serialize to json. This will allow us to merge requested tags from both the DB and the file system Alain Mazy <am@osimis.io> parents: 4921 diff changeset	2063 }
5222 3a61fd50f804 starting refactoring ExpandedResource Sebastien Jodogne <s.jodogne@gmail.com> parents: 5221 diff changeset	2064 else if (resource.GetLevel() == ResourceType_Study)
4935 acd3f72e2a21 split ExpandResource in 2: read from DB and serialize to json. This will allow us to merge requested tags from both the DB and the file system Alain Mazy <am@osimis.io> parents: 4921 diff changeset	2065 {
acd3f72e2a21 split ExpandResource in 2: read from DB and serialize to json. This will allow us to merge requested tags from both the DB and the file system Alain Mazy <am@osimis.io> parents: 4921 diff changeset	2066 target["Series"] = c;
acd3f72e2a21 split ExpandResource in 2: read from DB and serialize to json. This will allow us to merge requested tags from both the DB and the file system Alain Mazy <am@osimis.io> parents: 4921 diff changeset	2067 }
acd3f72e2a21 split ExpandResource in 2: read from DB and serialize to json. This will allow us to merge requested tags from both the DB and the file system Alain Mazy <am@osimis.io> parents: 4921 diff changeset	2068 else
acd3f72e2a21 split ExpandResource in 2: read from DB and serialize to json. This will allow us to merge requested tags from both the DB and the file system Alain Mazy <am@osimis.io> parents: 4921 diff changeset	2069 {
acd3f72e2a21 split ExpandResource in 2: read from DB and serialize to json. This will allow us to merge requested tags from both the DB and the file system Alain Mazy <am@osimis.io> parents: 4921 diff changeset	2070 target["Instances"] = c;
acd3f72e2a21 split ExpandResource in 2: read from DB and serialize to json. This will allow us to merge requested tags from both the DB and the file system Alain Mazy <am@osimis.io> parents: 4921 diff changeset	2071 }
acd3f72e2a21 split ExpandResource in 2: read from DB and serialize to json. This will allow us to merge requested tags from both the DB and the file system Alain Mazy <am@osimis.io> parents: 4921 diff changeset	2072 break;
acd3f72e2a21 split ExpandResource in 2: read from DB and serialize to json. This will allow us to merge requested tags from both the DB and the file system Alain Mazy <am@osimis.io> parents: 4921 diff changeset	2073 }
acd3f72e2a21 split ExpandResource in 2: read from DB and serialize to json. This will allow us to merge requested tags from both the DB and the file system Alain Mazy <am@osimis.io> parents: 4921 diff changeset	2074
acd3f72e2a21 split ExpandResource in 2: read from DB and serialize to json. This will allow us to merge requested tags from both the DB and the file system Alain Mazy <am@osimis.io> parents: 4921 diff changeset	2075 case ResourceType_Instance:
acd3f72e2a21 split ExpandResource in 2: read from DB and serialize to json. This will allow us to merge requested tags from both the DB and the file system Alain Mazy <am@osimis.io> parents: 4921 diff changeset	2076 break;
acd3f72e2a21 split ExpandResource in 2: read from DB and serialize to json. This will allow us to merge requested tags from both the DB and the file system Alain Mazy <am@osimis.io> parents: 4921 diff changeset	2077
acd3f72e2a21 split ExpandResource in 2: read from DB and serialize to json. This will allow us to merge requested tags from both the DB and the file system Alain Mazy <am@osimis.io> parents: 4921 diff changeset	2078 default:
acd3f72e2a21 split ExpandResource in 2: read from DB and serialize to json. This will allow us to merge requested tags from both the DB and the file system Alain Mazy <am@osimis.io> parents: 4921 diff changeset	2079 throw OrthancException(ErrorCode_InternalError);
acd3f72e2a21 split ExpandResource in 2: read from DB and serialize to json. This will allow us to merge requested tags from both the DB and the file system Alain Mazy <am@osimis.io> parents: 4921 diff changeset	2080 }
acd3f72e2a21 split ExpandResource in 2: read from DB and serialize to json. This will allow us to merge requested tags from both the DB and the file system Alain Mazy <am@osimis.io> parents: 4921 diff changeset	2081
5222 3a61fd50f804 starting refactoring ExpandedResource Sebastien Jodogne <s.jodogne@gmail.com> parents: 5221 diff changeset	2082 switch (resource.GetLevel())
4935 acd3f72e2a21 split ExpandResource in 2: read from DB and serialize to json. This will allow us to merge requested tags from both the DB and the file system Alain Mazy <am@osimis.io> parents: 4921 diff changeset	2083 {
acd3f72e2a21 split ExpandResource in 2: read from DB and serialize to json. This will allow us to merge requested tags from both the DB and the file system Alain Mazy <am@osimis.io> parents: 4921 diff changeset	2084 case ResourceType_Patient:
acd3f72e2a21 split ExpandResource in 2: read from DB and serialize to json. This will allow us to merge requested tags from both the DB and the file system Alain Mazy <am@osimis.io> parents: 4921 diff changeset	2085 case ResourceType_Study:
acd3f72e2a21 split ExpandResource in 2: read from DB and serialize to json. This will allow us to merge requested tags from both the DB and the file system Alain Mazy <am@osimis.io> parents: 4921 diff changeset	2086 break;
acd3f72e2a21 split ExpandResource in 2: read from DB and serialize to json. This will allow us to merge requested tags from both the DB and the file system Alain Mazy <am@osimis.io> parents: 4921 diff changeset	2087
acd3f72e2a21 split ExpandResource in 2: read from DB and serialize to json. This will allow us to merge requested tags from both the DB and the file system Alain Mazy <am@osimis.io> parents: 4921 diff changeset	2088 case ResourceType_Series:
acd3f72e2a21 split ExpandResource in 2: read from DB and serialize to json. This will allow us to merge requested tags from both the DB and the file system Alain Mazy <am@osimis.io> parents: 4921 diff changeset	2089 if (resource.expectedNumberOfInstances_ < 0)
acd3f72e2a21 split ExpandResource in 2: read from DB and serialize to json. This will allow us to merge requested tags from both the DB and the file system Alain Mazy <am@osimis.io> parents: 4921 diff changeset	2090 {
acd3f72e2a21 split ExpandResource in 2: read from DB and serialize to json. This will allow us to merge requested tags from both the DB and the file system Alain Mazy <am@osimis.io> parents: 4921 diff changeset	2091 target["ExpectedNumberOfInstances"] = Json::nullValue;
acd3f72e2a21 split ExpandResource in 2: read from DB and serialize to json. This will allow us to merge requested tags from both the DB and the file system Alain Mazy <am@osimis.io> parents: 4921 diff changeset	2092 }
acd3f72e2a21 split ExpandResource in 2: read from DB and serialize to json. This will allow us to merge requested tags from both the DB and the file system Alain Mazy <am@osimis.io> parents: 4921 diff changeset	2093 else
acd3f72e2a21 split ExpandResource in 2: read from DB and serialize to json. This will allow us to merge requested tags from both the DB and the file system Alain Mazy <am@osimis.io> parents: 4921 diff changeset	2094 {
acd3f72e2a21 split ExpandResource in 2: read from DB and serialize to json. This will allow us to merge requested tags from both the DB and the file system Alain Mazy <am@osimis.io> parents: 4921 diff changeset	2095 target["ExpectedNumberOfInstances"] = resource.expectedNumberOfInstances_;
acd3f72e2a21 split ExpandResource in 2: read from DB and serialize to json. This will allow us to merge requested tags from both the DB and the file system Alain Mazy <am@osimis.io> parents: 4921 diff changeset	2096 }
acd3f72e2a21 split ExpandResource in 2: read from DB and serialize to json. This will allow us to merge requested tags from both the DB and the file system Alain Mazy <am@osimis.io> parents: 4921 diff changeset	2097 target["Status"] = resource.status_;
acd3f72e2a21 split ExpandResource in 2: read from DB and serialize to json. This will allow us to merge requested tags from both the DB and the file system Alain Mazy <am@osimis.io> parents: 4921 diff changeset	2098 break;
acd3f72e2a21 split ExpandResource in 2: read from DB and serialize to json. This will allow us to merge requested tags from both the DB and the file system Alain Mazy <am@osimis.io> parents: 4921 diff changeset	2099
acd3f72e2a21 split ExpandResource in 2: read from DB and serialize to json. This will allow us to merge requested tags from both the DB and the file system Alain Mazy <am@osimis.io> parents: 4921 diff changeset	2100 case ResourceType_Instance:
acd3f72e2a21 split ExpandResource in 2: read from DB and serialize to json. This will allow us to merge requested tags from both the DB and the file system Alain Mazy <am@osimis.io> parents: 4921 diff changeset	2101 {
acd3f72e2a21 split ExpandResource in 2: read from DB and serialize to json. This will allow us to merge requested tags from both the DB and the file system Alain Mazy <am@osimis.io> parents: 4921 diff changeset	2102 target["FileSize"] = static_cast<unsigned int>(resource.fileSize_);
acd3f72e2a21 split ExpandResource in 2: read from DB and serialize to json. This will allow us to merge requested tags from both the DB and the file system Alain Mazy <am@osimis.io> parents: 4921 diff changeset	2103 target["FileUuid"] = resource.fileUuid_;
acd3f72e2a21 split ExpandResource in 2: read from DB and serialize to json. This will allow us to merge requested tags from both the DB and the file system Alain Mazy <am@osimis.io> parents: 4921 diff changeset	2104
acd3f72e2a21 split ExpandResource in 2: read from DB and serialize to json. This will allow us to merge requested tags from both the DB and the file system Alain Mazy <am@osimis.io> parents: 4921 diff changeset	2105 if (resource.indexInSeries_ < 0)
acd3f72e2a21 split ExpandResource in 2: read from DB and serialize to json. This will allow us to merge requested tags from both the DB and the file system Alain Mazy <am@osimis.io> parents: 4921 diff changeset	2106 {
acd3f72e2a21 split ExpandResource in 2: read from DB and serialize to json. This will allow us to merge requested tags from both the DB and the file system Alain Mazy <am@osimis.io> parents: 4921 diff changeset	2107 target["IndexInSeries"] = Json::nullValue;
acd3f72e2a21 split ExpandResource in 2: read from DB and serialize to json. This will allow us to merge requested tags from both the DB and the file system Alain Mazy <am@osimis.io> parents: 4921 diff changeset	2108 }
acd3f72e2a21 split ExpandResource in 2: read from DB and serialize to json. This will allow us to merge requested tags from both the DB and the file system Alain Mazy <am@osimis.io> parents: 4921 diff changeset	2109 else
acd3f72e2a21 split ExpandResource in 2: read from DB and serialize to json. This will allow us to merge requested tags from both the DB and the file system Alain Mazy <am@osimis.io> parents: 4921 diff changeset	2110 {
acd3f72e2a21 split ExpandResource in 2: read from DB and serialize to json. This will allow us to merge requested tags from both the DB and the file system Alain Mazy <am@osimis.io> parents: 4921 diff changeset	2111 target["IndexInSeries"] = resource.indexInSeries_;
acd3f72e2a21 split ExpandResource in 2: read from DB and serialize to json. This will allow us to merge requested tags from both the DB and the file system Alain Mazy <am@osimis.io> parents: 4921 diff changeset	2112 }
acd3f72e2a21 split ExpandResource in 2: read from DB and serialize to json. This will allow us to merge requested tags from both the DB and the file system Alain Mazy <am@osimis.io> parents: 4921 diff changeset	2113
acd3f72e2a21 split ExpandResource in 2: read from DB and serialize to json. This will allow us to merge requested tags from both the DB and the file system Alain Mazy <am@osimis.io> parents: 4921 diff changeset	2114 break;
acd3f72e2a21 split ExpandResource in 2: read from DB and serialize to json. This will allow us to merge requested tags from both the DB and the file system Alain Mazy <am@osimis.io> parents: 4921 diff changeset	2115 }
acd3f72e2a21 split ExpandResource in 2: read from DB and serialize to json. This will allow us to merge requested tags from both the DB and the file system Alain Mazy <am@osimis.io> parents: 4921 diff changeset	2116
acd3f72e2a21 split ExpandResource in 2: read from DB and serialize to json. This will allow us to merge requested tags from both the DB and the file system Alain Mazy <am@osimis.io> parents: 4921 diff changeset	2117 default:
acd3f72e2a21 split ExpandResource in 2: read from DB and serialize to json. This will allow us to merge requested tags from both the DB and the file system Alain Mazy <am@osimis.io> parents: 4921 diff changeset	2118 throw OrthancException(ErrorCode_InternalError);
acd3f72e2a21 split ExpandResource in 2: read from DB and serialize to json. This will allow us to merge requested tags from both the DB and the file system Alain Mazy <am@osimis.io> parents: 4921 diff changeset	2119 }
acd3f72e2a21 split ExpandResource in 2: read from DB and serialize to json. This will allow us to merge requested tags from both the DB and the file system Alain Mazy <am@osimis.io> parents: 4921 diff changeset	2120
acd3f72e2a21 split ExpandResource in 2: read from DB and serialize to json. This will allow us to merge requested tags from both the DB and the file system Alain Mazy <am@osimis.io> parents: 4921 diff changeset	2121 if (!resource.anonymizedFrom_.empty())
acd3f72e2a21 split ExpandResource in 2: read from DB and serialize to json. This will allow us to merge requested tags from both the DB and the file system Alain Mazy <am@osimis.io> parents: 4921 diff changeset	2122 {
acd3f72e2a21 split ExpandResource in 2: read from DB and serialize to json. This will allow us to merge requested tags from both the DB and the file system Alain Mazy <am@osimis.io> parents: 4921 diff changeset	2123 target["AnonymizedFrom"] = resource.anonymizedFrom_;
acd3f72e2a21 split ExpandResource in 2: read from DB and serialize to json. This will allow us to merge requested tags from both the DB and the file system Alain Mazy <am@osimis.io> parents: 4921 diff changeset	2124 }
acd3f72e2a21 split ExpandResource in 2: read from DB and serialize to json. This will allow us to merge requested tags from both the DB and the file system Alain Mazy <am@osimis.io> parents: 4921 diff changeset	2125
acd3f72e2a21 split ExpandResource in 2: read from DB and serialize to json. This will allow us to merge requested tags from both the DB and the file system Alain Mazy <am@osimis.io> parents: 4921 diff changeset	2126 if (!resource.modifiedFrom_.empty())
acd3f72e2a21 split ExpandResource in 2: read from DB and serialize to json. This will allow us to merge requested tags from both the DB and the file system Alain Mazy <am@osimis.io> parents: 4921 diff changeset	2127 {
acd3f72e2a21 split ExpandResource in 2: read from DB and serialize to json. This will allow us to merge requested tags from both the DB and the file system Alain Mazy <am@osimis.io> parents: 4921 diff changeset	2128 target["ModifiedFrom"] = resource.modifiedFrom_;
acd3f72e2a21 split ExpandResource in 2: read from DB and serialize to json. This will allow us to merge requested tags from both the DB and the file system Alain Mazy <am@osimis.io> parents: 4921 diff changeset	2129 }
acd3f72e2a21 split ExpandResource in 2: read from DB and serialize to json. This will allow us to merge requested tags from both the DB and the file system Alain Mazy <am@osimis.io> parents: 4921 diff changeset	2130
5222 3a61fd50f804 starting refactoring ExpandedResource Sebastien Jodogne <s.jodogne@gmail.com> parents: 5221 diff changeset	2131 if (resource.GetLevel() == ResourceType_Patient \|\|
3a61fd50f804 starting refactoring ExpandedResource Sebastien Jodogne <s.jodogne@gmail.com> parents: 5221 diff changeset	2132 resource.GetLevel() == ResourceType_Study \|\|
3a61fd50f804 starting refactoring ExpandedResource Sebastien Jodogne <s.jodogne@gmail.com> parents: 5221 diff changeset	2133 resource.GetLevel() == ResourceType_Series)
4935 acd3f72e2a21 split ExpandResource in 2: read from DB and serialize to json. This will allow us to merge requested tags from both the DB and the file system Alain Mazy <am@osimis.io> parents: 4921 diff changeset	2134 {
acd3f72e2a21 split ExpandResource in 2: read from DB and serialize to json. This will allow us to merge requested tags from both the DB and the file system Alain Mazy <am@osimis.io> parents: 4921 diff changeset	2135 target["IsStable"] = resource.isStable_;
acd3f72e2a21 split ExpandResource in 2: read from DB and serialize to json. This will allow us to merge requested tags from both the DB and the file system Alain Mazy <am@osimis.io> parents: 4921 diff changeset	2136
acd3f72e2a21 split ExpandResource in 2: read from DB and serialize to json. This will allow us to merge requested tags from both the DB and the file system Alain Mazy <am@osimis.io> parents: 4921 diff changeset	2137 if (!resource.lastUpdate_.empty())
acd3f72e2a21 split ExpandResource in 2: read from DB and serialize to json. This will allow us to merge requested tags from both the DB and the file system Alain Mazy <am@osimis.io> parents: 4921 diff changeset	2138 {
acd3f72e2a21 split ExpandResource in 2: read from DB and serialize to json. This will allow us to merge requested tags from both the DB and the file system Alain Mazy <am@osimis.io> parents: 4921 diff changeset	2139 target["LastUpdate"] = resource.lastUpdate_;
acd3f72e2a21 split ExpandResource in 2: read from DB and serialize to json. This will allow us to merge requested tags from both the DB and the file system Alain Mazy <am@osimis.io> parents: 4921 diff changeset	2140 }
acd3f72e2a21 split ExpandResource in 2: read from DB and serialize to json. This will allow us to merge requested tags from both the DB and the file system Alain Mazy <am@osimis.io> parents: 4921 diff changeset	2141 }
acd3f72e2a21 split ExpandResource in 2: read from DB and serialize to json. This will allow us to merge requested tags from both the DB and the file system Alain Mazy <am@osimis.io> parents: 4921 diff changeset	2142
acd3f72e2a21 split ExpandResource in 2: read from DB and serialize to json. This will allow us to merge requested tags from both the DB and the file system Alain Mazy <am@osimis.io> parents: 4921 diff changeset	2143 // serialize tags
acd3f72e2a21 split ExpandResource in 2: read from DB and serialize to json. This will allow us to merge requested tags from both the DB and the file system Alain Mazy <am@osimis.io> parents: 4921 diff changeset	2144
acd3f72e2a21 split ExpandResource in 2: read from DB and serialize to json. This will allow us to merge requested tags from both the DB and the file system Alain Mazy <am@osimis.io> parents: 4921 diff changeset	2145 static const char* const MAIN_DICOM_TAGS = "MainDicomTags";
acd3f72e2a21 split ExpandResource in 2: read from DB and serialize to json. This will allow us to merge requested tags from both the DB and the file system Alain Mazy <am@osimis.io> parents: 4921 diff changeset	2146 static const char* const PATIENT_MAIN_DICOM_TAGS = "PatientMainDicomTags";
acd3f72e2a21 split ExpandResource in 2: read from DB and serialize to json. This will allow us to merge requested tags from both the DB and the file system Alain Mazy <am@osimis.io> parents: 4921 diff changeset	2147
acd3f72e2a21 split ExpandResource in 2: read from DB and serialize to json. This will allow us to merge requested tags from both the DB and the file system Alain Mazy <am@osimis.io> parents: 4921 diff changeset	2148 DicomMap mainDicomTags;
5222 3a61fd50f804 starting refactoring ExpandedResource Sebastien Jodogne <s.jodogne@gmail.com> parents: 5221 diff changeset	2149 resource.GetMainDicomTags().ExtractResourceInformation(mainDicomTags, resource.GetLevel());
4935 acd3f72e2a21 split ExpandResource in 2: read from DB and serialize to json. This will allow us to merge requested tags from both the DB and the file system Alain Mazy <am@osimis.io> parents: 4921 diff changeset	2150
acd3f72e2a21 split ExpandResource in 2: read from DB and serialize to json. This will allow us to merge requested tags from both the DB and the file system Alain Mazy <am@osimis.io> parents: 4921 diff changeset	2151 target[MAIN_DICOM_TAGS] = Json::objectValue;
acd3f72e2a21 split ExpandResource in 2: read from DB and serialize to json. This will allow us to merge requested tags from both the DB and the file system Alain Mazy <am@osimis.io> parents: 4921 diff changeset	2152 FromDcmtkBridge::ToJson(target[MAIN_DICOM_TAGS], mainDicomTags, format);
acd3f72e2a21 split ExpandResource in 2: read from DB and serialize to json. This will allow us to merge requested tags from both the DB and the file system Alain Mazy <am@osimis.io> parents: 4921 diff changeset	2153
5222 3a61fd50f804 starting refactoring ExpandedResource Sebastien Jodogne <s.jodogne@gmail.com> parents: 5221 diff changeset	2154 if (resource.GetLevel() == ResourceType_Study)
4935 acd3f72e2a21 split ExpandResource in 2: read from DB and serialize to json. This will allow us to merge requested tags from both the DB and the file system Alain Mazy <am@osimis.io> parents: 4921 diff changeset	2155 {
acd3f72e2a21 split ExpandResource in 2: read from DB and serialize to json. This will allow us to merge requested tags from both the DB and the file system Alain Mazy <am@osimis.io> parents: 4921 diff changeset	2156 DicomMap patientMainDicomTags;
5222 3a61fd50f804 starting refactoring ExpandedResource Sebastien Jodogne <s.jodogne@gmail.com> parents: 5221 diff changeset	2157 resource.GetMainDicomTags().ExtractPatientInformation(patientMainDicomTags);
4935 acd3f72e2a21 split ExpandResource in 2: read from DB and serialize to json. This will allow us to merge requested tags from both the DB and the file system Alain Mazy <am@osimis.io> parents: 4921 diff changeset	2158
acd3f72e2a21 split ExpandResource in 2: read from DB and serialize to json. This will allow us to merge requested tags from both the DB and the file system Alain Mazy <am@osimis.io> parents: 4921 diff changeset	2159 target[PATIENT_MAIN_DICOM_TAGS] = Json::objectValue;
acd3f72e2a21 split ExpandResource in 2: read from DB and serialize to json. This will allow us to merge requested tags from both the DB and the file system Alain Mazy <am@osimis.io> parents: 4921 diff changeset	2160 FromDcmtkBridge::ToJson(target[PATIENT_MAIN_DICOM_TAGS], patientMainDicomTags, format);
acd3f72e2a21 split ExpandResource in 2: read from DB and serialize to json. This will allow us to merge requested tags from both the DB and the file system Alain Mazy <am@osimis.io> parents: 4921 diff changeset	2161 }
acd3f72e2a21 split ExpandResource in 2: read from DB and serialize to json. This will allow us to merge requested tags from both the DB and the file system Alain Mazy <am@osimis.io> parents: 4921 diff changeset	2162
4936 8422e4f99a18 Handling RequestedTags in ExpandResource -> read parent main dicom tags if required. Not yet getting missing tags from file. Integration tests ok Alain Mazy <am@osimis.io> parents: 4935 diff changeset	2163 if (requestedTags.size() > 0)
8422e4f99a18 Handling RequestedTags in ExpandResource -> read parent main dicom tags if required. Not yet getting missing tags from file. Integration tests ok Alain Mazy <am@osimis.io> parents: 4935 diff changeset	2164 {
8422e4f99a18 Handling RequestedTags in ExpandResource -> read parent main dicom tags if required. Not yet getting missing tags from file. Integration tests ok Alain Mazy <am@osimis.io> parents: 4935 diff changeset	2165 static const char* const REQUESTED_TAGS = "RequestedTags";
8422e4f99a18 Handling RequestedTags in ExpandResource -> read parent main dicom tags if required. Not yet getting missing tags from file. Integration tests ok Alain Mazy <am@osimis.io> parents: 4935 diff changeset	2166
8422e4f99a18 Handling RequestedTags in ExpandResource -> read parent main dicom tags if required. Not yet getting missing tags from file. Integration tests ok Alain Mazy <am@osimis.io> parents: 4935 diff changeset	2167 DicomMap tags;
5222 3a61fd50f804 starting refactoring ExpandedResource Sebastien Jodogne <s.jodogne@gmail.com> parents: 5221 diff changeset	2168 resource.GetMainDicomTags().ExtractTags(tags, requestedTags);
4936 8422e4f99a18 Handling RequestedTags in ExpandResource -> read parent main dicom tags if required. Not yet getting missing tags from file. Integration tests ok Alain Mazy <am@osimis.io> parents: 4935 diff changeset	2169
8422e4f99a18 Handling RequestedTags in ExpandResource -> read parent main dicom tags if required. Not yet getting missing tags from file. Integration tests ok Alain Mazy <am@osimis.io> parents: 4935 diff changeset	2170 target[REQUESTED_TAGS] = Json::objectValue;
8422e4f99a18 Handling RequestedTags in ExpandResource -> read parent main dicom tags if required. Not yet getting missing tags from file. Integration tests ok Alain Mazy <am@osimis.io> parents: 4935 diff changeset	2171 FromDcmtkBridge::ToJson(target[REQUESTED_TAGS], tags, format);
5036 877bc3b96476 Handle Dicom sequences in ExtraMainDicomTags and save them in the 'MainDicomSequences' metadata Alain Mazy <am@osimis.io> parents: 4994 diff changeset	2172
4936 8422e4f99a18 Handling RequestedTags in ExpandResource -> read parent main dicom tags if required. Not yet getting missing tags from file. Integration tests ok Alain Mazy <am@osimis.io> parents: 4935 diff changeset	2173 }
8422e4f99a18 Handling RequestedTags in ExpandResource -> read parent main dicom tags if required. Not yet getting missing tags from file. Integration tests ok Alain Mazy <am@osimis.io> parents: 4935 diff changeset	2174
5221 d0f7c742d397 started implementation of labels Sebastien Jodogne <s.jodogne@gmail.com> parents: 5220 diff changeset	2175 {
d0f7c742d397 started implementation of labels Sebastien Jodogne <s.jodogne@gmail.com> parents: 5220 diff changeset	2176 Json::Value labels = Json::arrayValue;
d0f7c742d397 started implementation of labels Sebastien Jodogne <s.jodogne@gmail.com> parents: 5220 diff changeset	2177
d0f7c742d397 started implementation of labels Sebastien Jodogne <s.jodogne@gmail.com> parents: 5220 diff changeset	2178 for (std::set<std::string>::const_iterator it = resource.labels_.begin(); it != resource.labels_.end(); ++it)
d0f7c742d397 started implementation of labels Sebastien Jodogne <s.jodogne@gmail.com> parents: 5220 diff changeset	2179 {
d0f7c742d397 started implementation of labels Sebastien Jodogne <s.jodogne@gmail.com> parents: 5220 diff changeset	2180 labels.append(*it);
d0f7c742d397 started implementation of labels Sebastien Jodogne <s.jodogne@gmail.com> parents: 5220 diff changeset	2181 }
d0f7c742d397 started implementation of labels Sebastien Jodogne <s.jodogne@gmail.com> parents: 5220 diff changeset	2182
d0f7c742d397 started implementation of labels Sebastien Jodogne <s.jodogne@gmail.com> parents: 5220 diff changeset	2183 target["Labels"] = labels;
d0f7c742d397 started implementation of labels Sebastien Jodogne <s.jodogne@gmail.com> parents: 5220 diff changeset	2184 }
4935 acd3f72e2a21 split ExpandResource in 2: read from DB and serialize to json. This will allow us to merge requested tags from both the DB and the file system Alain Mazy <am@osimis.io> parents: 4921 diff changeset	2185 }
acd3f72e2a21 split ExpandResource in 2: read from DB and serialize to json. This will allow us to merge requested tags from both the DB and the file system Alain Mazy <am@osimis.io> parents: 4921 diff changeset	2186
acd3f72e2a21 split ExpandResource in 2: read from DB and serialize to json. This will allow us to merge requested tags from both the DB and the file system Alain Mazy <am@osimis.io> parents: 4921 diff changeset	2187
4944 f377d5643538 new Warnings configuration + InstanceAvailability tag Alain Mazy <am@osimis.io> parents: 4941 diff changeset	2188 static void ComputeInstanceTags(ExpandedResource& resource,
f377d5643538 new Warnings configuration + InstanceAvailability tag Alain Mazy <am@osimis.io> parents: 4941 diff changeset	2189 ServerContext& context,
f377d5643538 new Warnings configuration + InstanceAvailability tag Alain Mazy <am@osimis.io> parents: 4941 diff changeset	2190 const std::string& instancePublicId,
f377d5643538 new Warnings configuration + InstanceAvailability tag Alain Mazy <am@osimis.io> parents: 4941 diff changeset	2191 const std::set<DicomTag>& requestedTags)
f377d5643538 new Warnings configuration + InstanceAvailability tag Alain Mazy <am@osimis.io> parents: 4941 diff changeset	2192 {
f377d5643538 new Warnings configuration + InstanceAvailability tag Alain Mazy <am@osimis.io> parents: 4941 diff changeset	2193 if (requestedTags.count(DICOM_TAG_INSTANCE_AVAILABILITY) > 0)
f377d5643538 new Warnings configuration + InstanceAvailability tag Alain Mazy <am@osimis.io> parents: 4941 diff changeset	2194 {
5222 3a61fd50f804 starting refactoring ExpandedResource Sebastien Jodogne <s.jodogne@gmail.com> parents: 5221 diff changeset	2195 resource.GetMainDicomTags().SetValue(DICOM_TAG_INSTANCE_AVAILABILITY, "ONLINE", false);
4944 f377d5643538 new Warnings configuration + InstanceAvailability tag Alain Mazy <am@osimis.io> parents: 4941 diff changeset	2196 resource.missingRequestedTags_.erase(DICOM_TAG_INSTANCE_AVAILABILITY);
f377d5643538 new Warnings configuration + InstanceAvailability tag Alain Mazy <am@osimis.io> parents: 4941 diff changeset	2197 }
f377d5643538 new Warnings configuration + InstanceAvailability tag Alain Mazy <am@osimis.io> parents: 4941 diff changeset	2198 }
f377d5643538 new Warnings configuration + InstanceAvailability tag Alain Mazy <am@osimis.io> parents: 4941 diff changeset	2199
f377d5643538 new Warnings configuration + InstanceAvailability tag Alain Mazy <am@osimis.io> parents: 4941 diff changeset	2200
4940 304514ce84ee tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags' Alain Mazy <am@osimis.io> parents: 4939 diff changeset	2201 static void ComputeSeriesTags(ExpandedResource& resource,
304514ce84ee tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags' Alain Mazy <am@osimis.io> parents: 4939 diff changeset	2202 ServerContext& context,
304514ce84ee tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags' Alain Mazy <am@osimis.io> parents: 4939 diff changeset	2203 const std::string& seriesPublicId,
304514ce84ee tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags' Alain Mazy <am@osimis.io> parents: 4939 diff changeset	2204 const std::set<DicomTag>& requestedTags)
304514ce84ee tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags' Alain Mazy <am@osimis.io> parents: 4939 diff changeset	2205 {
304514ce84ee tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags' Alain Mazy <am@osimis.io> parents: 4939 diff changeset	2206 if (requestedTags.count(DICOM_TAG_NUMBER_OF_SERIES_RELATED_INSTANCES) > 0)
304514ce84ee tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags' Alain Mazy <am@osimis.io> parents: 4939 diff changeset	2207 {
304514ce84ee tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags' Alain Mazy <am@osimis.io> parents: 4939 diff changeset	2208 ServerIndex& index = context.GetIndex();
304514ce84ee tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags' Alain Mazy <am@osimis.io> parents: 4939 diff changeset	2209 std::list<std::string> instances;
304514ce84ee tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags' Alain Mazy <am@osimis.io> parents: 4939 diff changeset	2210
304514ce84ee tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags' Alain Mazy <am@osimis.io> parents: 4939 diff changeset	2211 index.GetChildren(instances, seriesPublicId);
304514ce84ee tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags' Alain Mazy <am@osimis.io> parents: 4939 diff changeset	2212
5222 3a61fd50f804 starting refactoring ExpandedResource Sebastien Jodogne <s.jodogne@gmail.com> parents: 5221 diff changeset	2213 resource.GetMainDicomTags().SetValue(DICOM_TAG_NUMBER_OF_SERIES_RELATED_INSTANCES,
4940 304514ce84ee tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags' Alain Mazy <am@osimis.io> parents: 4939 diff changeset	2214 boost::lexical_cast<std::string>(instances.size()), false);
304514ce84ee tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags' Alain Mazy <am@osimis.io> parents: 4939 diff changeset	2215 resource.missingRequestedTags_.erase(DICOM_TAG_NUMBER_OF_SERIES_RELATED_INSTANCES);
304514ce84ee tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags' Alain Mazy <am@osimis.io> parents: 4939 diff changeset	2216 }
304514ce84ee tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags' Alain Mazy <am@osimis.io> parents: 4939 diff changeset	2217 }
304514ce84ee tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags' Alain Mazy <am@osimis.io> parents: 4939 diff changeset	2218
304514ce84ee tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags' Alain Mazy <am@osimis.io> parents: 4939 diff changeset	2219 static void ComputeStudyTags(ExpandedResource& resource,
304514ce84ee tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags' Alain Mazy <am@osimis.io> parents: 4939 diff changeset	2220 ServerContext& context,
304514ce84ee tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags' Alain Mazy <am@osimis.io> parents: 4939 diff changeset	2221 const std::string& studyPublicId,
304514ce84ee tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags' Alain Mazy <am@osimis.io> parents: 4939 diff changeset	2222 const std::set<DicomTag>& requestedTags)
304514ce84ee tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags' Alain Mazy <am@osimis.io> parents: 4939 diff changeset	2223 {
304514ce84ee tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags' Alain Mazy <am@osimis.io> parents: 4939 diff changeset	2224 ServerIndex& index = context.GetIndex();
304514ce84ee tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags' Alain Mazy <am@osimis.io> parents: 4939 diff changeset	2225 std::list<std::string> series;
304514ce84ee tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags' Alain Mazy <am@osimis.io> parents: 4939 diff changeset	2226 std::list<std::string> instances;
304514ce84ee tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags' Alain Mazy <am@osimis.io> parents: 4939 diff changeset	2227
304514ce84ee tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags' Alain Mazy <am@osimis.io> parents: 4939 diff changeset	2228 bool hasNbRelatedSeries = requestedTags.count(DICOM_TAG_NUMBER_OF_STUDY_RELATED_SERIES) > 0;
304514ce84ee tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags' Alain Mazy <am@osimis.io> parents: 4939 diff changeset	2229 bool hasNbRelatedInstances = requestedTags.count(DICOM_TAG_NUMBER_OF_STUDY_RELATED_INSTANCES) > 0;
304514ce84ee tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags' Alain Mazy <am@osimis.io> parents: 4939 diff changeset	2230 bool hasModalitiesInStudy = requestedTags.count(DICOM_TAG_MODALITIES_IN_STUDY) > 0;
304514ce84ee tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags' Alain Mazy <am@osimis.io> parents: 4939 diff changeset	2231 bool hasSopClassesInStudy = requestedTags.count(DICOM_TAG_SOP_CLASSES_IN_STUDY) > 0;
304514ce84ee tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags' Alain Mazy <am@osimis.io> parents: 4939 diff changeset	2232
304514ce84ee tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags' Alain Mazy <am@osimis.io> parents: 4939 diff changeset	2233 index.GetChildren(series, studyPublicId);
304514ce84ee tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags' Alain Mazy <am@osimis.io> parents: 4939 diff changeset	2234
304514ce84ee tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags' Alain Mazy <am@osimis.io> parents: 4939 diff changeset	2235 if (hasModalitiesInStudy)
304514ce84ee tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags' Alain Mazy <am@osimis.io> parents: 4939 diff changeset	2236 {
304514ce84ee tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags' Alain Mazy <am@osimis.io> parents: 4939 diff changeset	2237 std::set<std::string> values;
304514ce84ee tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags' Alain Mazy <am@osimis.io> parents: 4939 diff changeset	2238
304514ce84ee tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags' Alain Mazy <am@osimis.io> parents: 4939 diff changeset	2239 for (std::list<std::string>::const_iterator
304514ce84ee tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags' Alain Mazy <am@osimis.io> parents: 4939 diff changeset	2240 it = series.begin(); it != series.end(); ++it)
304514ce84ee tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags' Alain Mazy <am@osimis.io> parents: 4939 diff changeset	2241 {
304514ce84ee tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags' Alain Mazy <am@osimis.io> parents: 4939 diff changeset	2242 DicomMap tags;
304514ce84ee tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags' Alain Mazy <am@osimis.io> parents: 4939 diff changeset	2243 index.GetMainDicomTags(tags, *it, ResourceType_Series, ResourceType_Series);
304514ce84ee tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags' Alain Mazy <am@osimis.io> parents: 4939 diff changeset	2244
304514ce84ee tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags' Alain Mazy <am@osimis.io> parents: 4939 diff changeset	2245 const DicomValue* value = tags.TestAndGetValue(DICOM_TAG_MODALITY);
304514ce84ee tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags' Alain Mazy <am@osimis.io> parents: 4939 diff changeset	2246
304514ce84ee tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags' Alain Mazy <am@osimis.io> parents: 4939 diff changeset	2247 if (value != NULL &&
304514ce84ee tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags' Alain Mazy <am@osimis.io> parents: 4939 diff changeset	2248 !value->IsNull() &&
304514ce84ee tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags' Alain Mazy <am@osimis.io> parents: 4939 diff changeset	2249 !value->IsBinary())
304514ce84ee tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags' Alain Mazy <am@osimis.io> parents: 4939 diff changeset	2250 {
304514ce84ee tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags' Alain Mazy <am@osimis.io> parents: 4939 diff changeset	2251 values.insert(value->GetContent());
304514ce84ee tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags' Alain Mazy <am@osimis.io> parents: 4939 diff changeset	2252 }
304514ce84ee tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags' Alain Mazy <am@osimis.io> parents: 4939 diff changeset	2253 }
304514ce84ee tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags' Alain Mazy <am@osimis.io> parents: 4939 diff changeset	2254
304514ce84ee tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags' Alain Mazy <am@osimis.io> parents: 4939 diff changeset	2255 std::string modalities;
304514ce84ee tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags' Alain Mazy <am@osimis.io> parents: 4939 diff changeset	2256 Toolbox::JoinStrings(modalities, values, "\\");
304514ce84ee tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags' Alain Mazy <am@osimis.io> parents: 4939 diff changeset	2257
5222 3a61fd50f804 starting refactoring ExpandedResource Sebastien Jodogne <s.jodogne@gmail.com> parents: 5221 diff changeset	2258 resource.GetMainDicomTags().SetValue(DICOM_TAG_MODALITIES_IN_STUDY, modalities, false);
4940 304514ce84ee tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags' Alain Mazy <am@osimis.io> parents: 4939 diff changeset	2259 resource.missingRequestedTags_.erase(DICOM_TAG_MODALITIES_IN_STUDY);
304514ce84ee tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags' Alain Mazy <am@osimis.io> parents: 4939 diff changeset	2260 }
304514ce84ee tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags' Alain Mazy <am@osimis.io> parents: 4939 diff changeset	2261
304514ce84ee tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags' Alain Mazy <am@osimis.io> parents: 4939 diff changeset	2262 if (hasNbRelatedSeries)
304514ce84ee tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags' Alain Mazy <am@osimis.io> parents: 4939 diff changeset	2263 {
5222 3a61fd50f804 starting refactoring ExpandedResource Sebastien Jodogne <s.jodogne@gmail.com> parents: 5221 diff changeset	2264 resource.GetMainDicomTags().SetValue(DICOM_TAG_NUMBER_OF_STUDY_RELATED_SERIES,
4940 304514ce84ee tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags' Alain Mazy <am@osimis.io> parents: 4939 diff changeset	2265 boost::lexical_cast<std::string>(series.size()), false);
304514ce84ee tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags' Alain Mazy <am@osimis.io> parents: 4939 diff changeset	2266 resource.missingRequestedTags_.erase(DICOM_TAG_NUMBER_OF_STUDY_RELATED_SERIES);
304514ce84ee tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags' Alain Mazy <am@osimis.io> parents: 4939 diff changeset	2267 }
304514ce84ee tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags' Alain Mazy <am@osimis.io> parents: 4939 diff changeset	2268
304514ce84ee tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags' Alain Mazy <am@osimis.io> parents: 4939 diff changeset	2269 if (hasNbRelatedInstances \|\| hasSopClassesInStudy)
304514ce84ee tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags' Alain Mazy <am@osimis.io> parents: 4939 diff changeset	2270 {
304514ce84ee tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags' Alain Mazy <am@osimis.io> parents: 4939 diff changeset	2271 for (std::list<std::string>::const_iterator
304514ce84ee tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags' Alain Mazy <am@osimis.io> parents: 4939 diff changeset	2272 it = series.begin(); it != series.end(); ++it)
304514ce84ee tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags' Alain Mazy <am@osimis.io> parents: 4939 diff changeset	2273 {
304514ce84ee tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags' Alain Mazy <am@osimis.io> parents: 4939 diff changeset	2274 std::list<std::string> seriesInstancesIds;
304514ce84ee tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags' Alain Mazy <am@osimis.io> parents: 4939 diff changeset	2275 index.GetChildren(seriesInstancesIds, *it);
304514ce84ee tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags' Alain Mazy <am@osimis.io> parents: 4939 diff changeset	2276
304514ce84ee tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags' Alain Mazy <am@osimis.io> parents: 4939 diff changeset	2277 instances.splice(instances.end(), seriesInstancesIds);
304514ce84ee tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags' Alain Mazy <am@osimis.io> parents: 4939 diff changeset	2278 }
304514ce84ee tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags' Alain Mazy <am@osimis.io> parents: 4939 diff changeset	2279
304514ce84ee tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags' Alain Mazy <am@osimis.io> parents: 4939 diff changeset	2280 if (hasNbRelatedInstances)
304514ce84ee tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags' Alain Mazy <am@osimis.io> parents: 4939 diff changeset	2281 {
5222 3a61fd50f804 starting refactoring ExpandedResource Sebastien Jodogne <s.jodogne@gmail.com> parents: 5221 diff changeset	2282 resource.GetMainDicomTags().SetValue(DICOM_TAG_NUMBER_OF_STUDY_RELATED_INSTANCES,
4940 304514ce84ee tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags' Alain Mazy <am@osimis.io> parents: 4939 diff changeset	2283 boost::lexical_cast<std::string>(instances.size()), false);
304514ce84ee tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags' Alain Mazy <am@osimis.io> parents: 4939 diff changeset	2284 resource.missingRequestedTags_.erase(DICOM_TAG_NUMBER_OF_STUDY_RELATED_INSTANCES);
304514ce84ee tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags' Alain Mazy <am@osimis.io> parents: 4939 diff changeset	2285 }
304514ce84ee tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags' Alain Mazy <am@osimis.io> parents: 4939 diff changeset	2286
304514ce84ee tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags' Alain Mazy <am@osimis.io> parents: 4939 diff changeset	2287 if (hasSopClassesInStudy)
304514ce84ee tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags' Alain Mazy <am@osimis.io> parents: 4939 diff changeset	2288 {
304514ce84ee tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags' Alain Mazy <am@osimis.io> parents: 4939 diff changeset	2289 std::set<std::string> values;
304514ce84ee tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags' Alain Mazy <am@osimis.io> parents: 4939 diff changeset	2290
304514ce84ee tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags' Alain Mazy <am@osimis.io> parents: 4939 diff changeset	2291 for (std::list<std::string>::const_iterator
304514ce84ee tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags' Alain Mazy <am@osimis.io> parents: 4939 diff changeset	2292 it = instances.begin(); it != instances.end(); ++it)
304514ce84ee tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags' Alain Mazy <am@osimis.io> parents: 4939 diff changeset	2293 {
304514ce84ee tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags' Alain Mazy <am@osimis.io> parents: 4939 diff changeset	2294 std::string value;
304514ce84ee tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags' Alain Mazy <am@osimis.io> parents: 4939 diff changeset	2295
304514ce84ee tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags' Alain Mazy <am@osimis.io> parents: 4939 diff changeset	2296 if (context.LookupOrReconstructMetadata(value, *it, ResourceType_Instance, MetadataType_Instance_SopClassUid))
304514ce84ee tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags' Alain Mazy <am@osimis.io> parents: 4939 diff changeset	2297 {
304514ce84ee tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags' Alain Mazy <am@osimis.io> parents: 4939 diff changeset	2298 values.insert(value);
304514ce84ee tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags' Alain Mazy <am@osimis.io> parents: 4939 diff changeset	2299 }
304514ce84ee tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags' Alain Mazy <am@osimis.io> parents: 4939 diff changeset	2300 }
304514ce84ee tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags' Alain Mazy <am@osimis.io> parents: 4939 diff changeset	2301
304514ce84ee tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags' Alain Mazy <am@osimis.io> parents: 4939 diff changeset	2302 if (values.size() > 0)
304514ce84ee tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags' Alain Mazy <am@osimis.io> parents: 4939 diff changeset	2303 {
304514ce84ee tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags' Alain Mazy <am@osimis.io> parents: 4939 diff changeset	2304 std::string sopClassUids;
304514ce84ee tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags' Alain Mazy <am@osimis.io> parents: 4939 diff changeset	2305 Toolbox::JoinStrings(sopClassUids, values, "\\");
5222 3a61fd50f804 starting refactoring ExpandedResource Sebastien Jodogne <s.jodogne@gmail.com> parents: 5221 diff changeset	2306 resource.GetMainDicomTags().SetValue(DICOM_TAG_SOP_CLASSES_IN_STUDY, sopClassUids, false);
4940 304514ce84ee tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags' Alain Mazy <am@osimis.io> parents: 4939 diff changeset	2307 }
304514ce84ee tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags' Alain Mazy <am@osimis.io> parents: 4939 diff changeset	2308
304514ce84ee tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags' Alain Mazy <am@osimis.io> parents: 4939 diff changeset	2309 resource.missingRequestedTags_.erase(DICOM_TAG_SOP_CLASSES_IN_STUDY);
304514ce84ee tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags' Alain Mazy <am@osimis.io> parents: 4939 diff changeset	2310 }
304514ce84ee tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags' Alain Mazy <am@osimis.io> parents: 4939 diff changeset	2311 }
304514ce84ee tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags' Alain Mazy <am@osimis.io> parents: 4939 diff changeset	2312 }
304514ce84ee tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags' Alain Mazy <am@osimis.io> parents: 4939 diff changeset	2313
304514ce84ee tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags' Alain Mazy <am@osimis.io> parents: 4939 diff changeset	2314 static void ComputePatientTags(ExpandedResource& resource,
304514ce84ee tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags' Alain Mazy <am@osimis.io> parents: 4939 diff changeset	2315 ServerContext& context,
304514ce84ee tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags' Alain Mazy <am@osimis.io> parents: 4939 diff changeset	2316 const std::string& patientPublicId,
304514ce84ee tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags' Alain Mazy <am@osimis.io> parents: 4939 diff changeset	2317 const std::set<DicomTag>& requestedTags)
304514ce84ee tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags' Alain Mazy <am@osimis.io> parents: 4939 diff changeset	2318 {
304514ce84ee tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags' Alain Mazy <am@osimis.io> parents: 4939 diff changeset	2319 ServerIndex& index = context.GetIndex();
304514ce84ee tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags' Alain Mazy <am@osimis.io> parents: 4939 diff changeset	2320
304514ce84ee tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags' Alain Mazy <am@osimis.io> parents: 4939 diff changeset	2321 std::list<std::string> studies;
304514ce84ee tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags' Alain Mazy <am@osimis.io> parents: 4939 diff changeset	2322 std::list<std::string> series;
304514ce84ee tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags' Alain Mazy <am@osimis.io> parents: 4939 diff changeset	2323 std::list<std::string> instances;
304514ce84ee tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags' Alain Mazy <am@osimis.io> parents: 4939 diff changeset	2324
304514ce84ee tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags' Alain Mazy <am@osimis.io> parents: 4939 diff changeset	2325 bool hasNbRelatedStudies = requestedTags.count(DICOM_TAG_NUMBER_OF_PATIENT_RELATED_STUDIES) > 0;
304514ce84ee tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags' Alain Mazy <am@osimis.io> parents: 4939 diff changeset	2326 bool hasNbRelatedSeries = requestedTags.count(DICOM_TAG_NUMBER_OF_PATIENT_RELATED_SERIES) > 0;
304514ce84ee tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags' Alain Mazy <am@osimis.io> parents: 4939 diff changeset	2327 bool hasNbRelatedInstances = requestedTags.count(DICOM_TAG_NUMBER_OF_PATIENT_RELATED_INSTANCES) > 0;
304514ce84ee tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags' Alain Mazy <am@osimis.io> parents: 4939 diff changeset	2328
304514ce84ee tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags' Alain Mazy <am@osimis.io> parents: 4939 diff changeset	2329 index.GetChildren(studies, patientPublicId);
304514ce84ee tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags' Alain Mazy <am@osimis.io> parents: 4939 diff changeset	2330
304514ce84ee tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags' Alain Mazy <am@osimis.io> parents: 4939 diff changeset	2331 if (hasNbRelatedStudies)
304514ce84ee tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags' Alain Mazy <am@osimis.io> parents: 4939 diff changeset	2332 {
5222 3a61fd50f804 starting refactoring ExpandedResource Sebastien Jodogne <s.jodogne@gmail.com> parents: 5221 diff changeset	2333 resource.GetMainDicomTags().SetValue(DICOM_TAG_NUMBER_OF_PATIENT_RELATED_STUDIES,
4940 304514ce84ee tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags' Alain Mazy <am@osimis.io> parents: 4939 diff changeset	2334 boost::lexical_cast<std::string>(studies.size()), false);
304514ce84ee tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags' Alain Mazy <am@osimis.io> parents: 4939 diff changeset	2335 resource.missingRequestedTags_.erase(DICOM_TAG_NUMBER_OF_PATIENT_RELATED_STUDIES);
304514ce84ee tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags' Alain Mazy <am@osimis.io> parents: 4939 diff changeset	2336 }
304514ce84ee tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags' Alain Mazy <am@osimis.io> parents: 4939 diff changeset	2337
304514ce84ee tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags' Alain Mazy <am@osimis.io> parents: 4939 diff changeset	2338 if (hasNbRelatedSeries \|\| hasNbRelatedInstances)
304514ce84ee tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags' Alain Mazy <am@osimis.io> parents: 4939 diff changeset	2339 {
304514ce84ee tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags' Alain Mazy <am@osimis.io> parents: 4939 diff changeset	2340 for (std::list<std::string>::const_iterator
304514ce84ee tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags' Alain Mazy <am@osimis.io> parents: 4939 diff changeset	2341 it = studies.begin(); it != studies.end(); ++it)
304514ce84ee tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags' Alain Mazy <am@osimis.io> parents: 4939 diff changeset	2342 {
304514ce84ee tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags' Alain Mazy <am@osimis.io> parents: 4939 diff changeset	2343 std::list<std::string> thisSeriesIds;
304514ce84ee tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags' Alain Mazy <am@osimis.io> parents: 4939 diff changeset	2344 index.GetChildren(thisSeriesIds, *it);
304514ce84ee tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags' Alain Mazy <am@osimis.io> parents: 4939 diff changeset	2345 series.splice(series.end(), thisSeriesIds);
304514ce84ee tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags' Alain Mazy <am@osimis.io> parents: 4939 diff changeset	2346 }
304514ce84ee tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags' Alain Mazy <am@osimis.io> parents: 4939 diff changeset	2347
304514ce84ee tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags' Alain Mazy <am@osimis.io> parents: 4939 diff changeset	2348 if (hasNbRelatedSeries)
304514ce84ee tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags' Alain Mazy <am@osimis.io> parents: 4939 diff changeset	2349 {
5222 3a61fd50f804 starting refactoring ExpandedResource Sebastien Jodogne <s.jodogne@gmail.com> parents: 5221 diff changeset	2350 resource.GetMainDicomTags().SetValue(DICOM_TAG_NUMBER_OF_PATIENT_RELATED_SERIES,
4940 304514ce84ee tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags' Alain Mazy <am@osimis.io> parents: 4939 diff changeset	2351 boost::lexical_cast<std::string>(series.size()), false);
304514ce84ee tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags' Alain Mazy <am@osimis.io> parents: 4939 diff changeset	2352 resource.missingRequestedTags_.erase(DICOM_TAG_NUMBER_OF_PATIENT_RELATED_SERIES);
304514ce84ee tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags' Alain Mazy <am@osimis.io> parents: 4939 diff changeset	2353 }
304514ce84ee tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags' Alain Mazy <am@osimis.io> parents: 4939 diff changeset	2354 }
304514ce84ee tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags' Alain Mazy <am@osimis.io> parents: 4939 diff changeset	2355
304514ce84ee tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags' Alain Mazy <am@osimis.io> parents: 4939 diff changeset	2356 if (hasNbRelatedInstances)
304514ce84ee tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags' Alain Mazy <am@osimis.io> parents: 4939 diff changeset	2357 {
304514ce84ee tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags' Alain Mazy <am@osimis.io> parents: 4939 diff changeset	2358 for (std::list<std::string>::const_iterator
304514ce84ee tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags' Alain Mazy <am@osimis.io> parents: 4939 diff changeset	2359 it = series.begin(); it != series.end(); ++it)
304514ce84ee tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags' Alain Mazy <am@osimis.io> parents: 4939 diff changeset	2360 {
304514ce84ee tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags' Alain Mazy <am@osimis.io> parents: 4939 diff changeset	2361 std::list<std::string> thisInstancesIds;
304514ce84ee tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags' Alain Mazy <am@osimis.io> parents: 4939 diff changeset	2362 index.GetChildren(thisInstancesIds, *it);
304514ce84ee tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags' Alain Mazy <am@osimis.io> parents: 4939 diff changeset	2363 instances.splice(instances.end(), thisInstancesIds);
304514ce84ee tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags' Alain Mazy <am@osimis.io> parents: 4939 diff changeset	2364 }
304514ce84ee tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags' Alain Mazy <am@osimis.io> parents: 4939 diff changeset	2365
5222 3a61fd50f804 starting refactoring ExpandedResource Sebastien Jodogne <s.jodogne@gmail.com> parents: 5221 diff changeset	2366 resource.GetMainDicomTags().SetValue(DICOM_TAG_NUMBER_OF_PATIENT_RELATED_INSTANCES,
4940 304514ce84ee tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags' Alain Mazy <am@osimis.io> parents: 4939 diff changeset	2367 boost::lexical_cast<std::string>(instances.size()), false);
304514ce84ee tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags' Alain Mazy <am@osimis.io> parents: 4939 diff changeset	2368 resource.missingRequestedTags_.erase(DICOM_TAG_NUMBER_OF_PATIENT_RELATED_INSTANCES);
304514ce84ee tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags' Alain Mazy <am@osimis.io> parents: 4939 diff changeset	2369 }
304514ce84ee tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags' Alain Mazy <am@osimis.io> parents: 4939 diff changeset	2370 }
304514ce84ee tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags' Alain Mazy <am@osimis.io> parents: 4939 diff changeset	2371
304514ce84ee tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags' Alain Mazy <am@osimis.io> parents: 4939 diff changeset	2372
304514ce84ee tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags' Alain Mazy <am@osimis.io> parents: 4939 diff changeset	2373 static void ComputeTags(ExpandedResource& resource,
304514ce84ee tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags' Alain Mazy <am@osimis.io> parents: 4939 diff changeset	2374 ServerContext& context,
304514ce84ee tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags' Alain Mazy <am@osimis.io> parents: 4939 diff changeset	2375 const std::string& resourceId,
304514ce84ee tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags' Alain Mazy <am@osimis.io> parents: 4939 diff changeset	2376 ResourceType level,
304514ce84ee tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags' Alain Mazy <am@osimis.io> parents: 4939 diff changeset	2377 const std::set<DicomTag>& requestedTags)
304514ce84ee tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags' Alain Mazy <am@osimis.io> parents: 4939 diff changeset	2378 {
304514ce84ee tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags' Alain Mazy <am@osimis.io> parents: 4939 diff changeset	2379 if (level == ResourceType_Patient
304514ce84ee tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags' Alain Mazy <am@osimis.io> parents: 4939 diff changeset	2380 && DicomMap::HasComputedTags(resource.missingRequestedTags_, ResourceType_Patient))
304514ce84ee tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags' Alain Mazy <am@osimis.io> parents: 4939 diff changeset	2381 {
304514ce84ee tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags' Alain Mazy <am@osimis.io> parents: 4939 diff changeset	2382 ComputePatientTags(resource, context, resourceId, requestedTags);
304514ce84ee tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags' Alain Mazy <am@osimis.io> parents: 4939 diff changeset	2383 }
304514ce84ee tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags' Alain Mazy <am@osimis.io> parents: 4939 diff changeset	2384
304514ce84ee tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags' Alain Mazy <am@osimis.io> parents: 4939 diff changeset	2385 if (level == ResourceType_Study
304514ce84ee tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags' Alain Mazy <am@osimis.io> parents: 4939 diff changeset	2386 && DicomMap::HasComputedTags(resource.missingRequestedTags_, ResourceType_Study))
304514ce84ee tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags' Alain Mazy <am@osimis.io> parents: 4939 diff changeset	2387 {
304514ce84ee tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags' Alain Mazy <am@osimis.io> parents: 4939 diff changeset	2388 ComputeStudyTags(resource, context, resourceId, requestedTags);
304514ce84ee tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags' Alain Mazy <am@osimis.io> parents: 4939 diff changeset	2389 }
304514ce84ee tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags' Alain Mazy <am@osimis.io> parents: 4939 diff changeset	2390
304514ce84ee tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags' Alain Mazy <am@osimis.io> parents: 4939 diff changeset	2391 if (level == ResourceType_Series
304514ce84ee tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags' Alain Mazy <am@osimis.io> parents: 4939 diff changeset	2392 && DicomMap::HasComputedTags(resource.missingRequestedTags_, ResourceType_Series))
304514ce84ee tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags' Alain Mazy <am@osimis.io> parents: 4939 diff changeset	2393 {
304514ce84ee tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags' Alain Mazy <am@osimis.io> parents: 4939 diff changeset	2394 ComputeSeriesTags(resource, context, resourceId, requestedTags);
304514ce84ee tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags' Alain Mazy <am@osimis.io> parents: 4939 diff changeset	2395 }
4944 f377d5643538 new Warnings configuration + InstanceAvailability tag Alain Mazy <am@osimis.io> parents: 4941 diff changeset	2396
f377d5643538 new Warnings configuration + InstanceAvailability tag Alain Mazy <am@osimis.io> parents: 4941 diff changeset	2397 if (level == ResourceType_Instance
f377d5643538 new Warnings configuration + InstanceAvailability tag Alain Mazy <am@osimis.io> parents: 4941 diff changeset	2398 && DicomMap::HasComputedTags(resource.missingRequestedTags_, ResourceType_Instance))
f377d5643538 new Warnings configuration + InstanceAvailability tag Alain Mazy <am@osimis.io> parents: 4941 diff changeset	2399 {
f377d5643538 new Warnings configuration + InstanceAvailability tag Alain Mazy <am@osimis.io> parents: 4941 diff changeset	2400 ComputeInstanceTags(resource, context, resourceId, requestedTags);
f377d5643538 new Warnings configuration + InstanceAvailability tag Alain Mazy <am@osimis.io> parents: 4941 diff changeset	2401 }
4940 304514ce84ee tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags' Alain Mazy <am@osimis.io> parents: 4939 diff changeset	2402 }
304514ce84ee tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags' Alain Mazy <am@osimis.io> parents: 4939 diff changeset	2403
4935 acd3f72e2a21 split ExpandResource in 2: read from DB and serialize to json. This will allow us to merge requested tags from both the DB and the file system Alain Mazy <am@osimis.io> parents: 4921 diff changeset	2404 bool ServerContext::ExpandResource(Json::Value& target,
acd3f72e2a21 split ExpandResource in 2: read from DB and serialize to json. This will allow us to merge requested tags from both the DB and the file system Alain Mazy <am@osimis.io> parents: 4921 diff changeset	2405 const std::string& publicId,
acd3f72e2a21 split ExpandResource in 2: read from DB and serialize to json. This will allow us to merge requested tags from both the DB and the file system Alain Mazy <am@osimis.io> parents: 4921 diff changeset	2406 ResourceType level,
4936 8422e4f99a18 Handling RequestedTags in ExpandResource -> read parent main dicom tags if required. Not yet getting missing tags from file. Integration tests ok Alain Mazy <am@osimis.io> parents: 4935 diff changeset	2407 DicomToJsonFormat format,
5058 d4e5ca0c9307 Fix the "Never" option of the "StorageAccessOnFind" that was sill accessing files (bug introduced in 1.11.0) Alain Mazy <am@osimis.io> parents: 5048 diff changeset	2408 const std::set<DicomTag>& requestedTags,
d4e5ca0c9307 Fix the "Never" option of the "StorageAccessOnFind" that was sill accessing files (bug introduced in 1.11.0) Alain Mazy <am@osimis.io> parents: 5048 diff changeset	2409 bool allowStorageAccess)
4935 acd3f72e2a21 split ExpandResource in 2: read from DB and serialize to json. This will allow us to merge requested tags from both the DB and the file system Alain Mazy <am@osimis.io> parents: 4921 diff changeset	2410 {
4937 3f9b9865c8cc include requested tags from storage if needed Alain Mazy <am@osimis.io> parents: 4936 diff changeset	2411 std::string unusedInstanceId;
4940 304514ce84ee tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags' Alain Mazy <am@osimis.io> parents: 4939 diff changeset	2412 Json::Value* unusedDicomAsJson = NULL;
304514ce84ee tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags' Alain Mazy <am@osimis.io> parents: 4939 diff changeset	2413 DicomMap unusedMainDicomTags;
4937 3f9b9865c8cc include requested tags from storage if needed Alain Mazy <am@osimis.io> parents: 4936 diff changeset	2414
5058 d4e5ca0c9307 Fix the "Never" option of the "StorageAccessOnFind" that was sill accessing files (bug introduced in 1.11.0) Alain Mazy <am@osimis.io> parents: 5048 diff changeset	2415 return ExpandResource(target, publicId, unusedMainDicomTags, unusedInstanceId, unusedDicomAsJson, level, format, requestedTags, allowStorageAccess);
4937 3f9b9865c8cc include requested tags from storage if needed Alain Mazy <am@osimis.io> parents: 4936 diff changeset	2416 }
3f9b9865c8cc include requested tags from storage if needed Alain Mazy <am@osimis.io> parents: 4936 diff changeset	2417
3f9b9865c8cc include requested tags from storage if needed Alain Mazy <am@osimis.io> parents: 4936 diff changeset	2418 bool ServerContext::ExpandResource(Json::Value& target,
3f9b9865c8cc include requested tags from storage if needed Alain Mazy <am@osimis.io> parents: 4936 diff changeset	2419 const std::string& publicId,
4940 304514ce84ee tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags' Alain Mazy <am@osimis.io> parents: 4939 diff changeset	2420 const DicomMap& mainDicomTags, // optional: the main dicom tags for the resource (if already available)
4939 e8a2e145c80e cleanup Alain Mazy <am@osimis.io> parents: 4937 diff changeset	2421 const std::string& instanceId, // optional: the id of an instance for the resource (if already available)
5060 e69a3ff39bc5 fix reuse of DicomAsJson between lookup and answers Alain Mazy <am@osimis.io> parents: 5058 diff changeset	2422 const Json::Value* dicomAsJson, // optional: the dicom-as-json for the resource (if already available)
4937 3f9b9865c8cc include requested tags from storage if needed Alain Mazy <am@osimis.io> parents: 4936 diff changeset	2423 ResourceType level,
3f9b9865c8cc include requested tags from storage if needed Alain Mazy <am@osimis.io> parents: 4936 diff changeset	2424 DicomToJsonFormat format,
5058 d4e5ca0c9307 Fix the "Never" option of the "StorageAccessOnFind" that was sill accessing files (bug introduced in 1.11.0) Alain Mazy <am@osimis.io> parents: 5048 diff changeset	2425 const std::set<DicomTag>& requestedTags,
d4e5ca0c9307 Fix the "Never" option of the "StorageAccessOnFind" that was sill accessing files (bug introduced in 1.11.0) Alain Mazy <am@osimis.io> parents: 5048 diff changeset	2426 bool allowStorageAccess)
4937 3f9b9865c8cc include requested tags from storage if needed Alain Mazy <am@osimis.io> parents: 4936 diff changeset	2427 {
4935 acd3f72e2a21 split ExpandResource in 2: read from DB and serialize to json. This will allow us to merge requested tags from both the DB and the file system Alain Mazy <am@osimis.io> parents: 4921 diff changeset	2428 ExpandedResource resource;
acd3f72e2a21 split ExpandResource in 2: read from DB and serialize to json. This will allow us to merge requested tags from both the DB and the file system Alain Mazy <am@osimis.io> parents: 4921 diff changeset	2429
5222 3a61fd50f804 starting refactoring ExpandedResource Sebastien Jodogne <s.jodogne@gmail.com> parents: 5221 diff changeset	2430 if (ExpandResource(resource, publicId, mainDicomTags, instanceId, dicomAsJson, level, requestedTags, ExpandResourceFlags_Default, allowStorageAccess))
4939 e8a2e145c80e cleanup Alain Mazy <am@osimis.io> parents: 4937 diff changeset	2431 {
e8a2e145c80e cleanup Alain Mazy <am@osimis.io> parents: 4937 diff changeset	2432 SerializeExpandedResource(target, resource, format, requestedTags);
e8a2e145c80e cleanup Alain Mazy <am@osimis.io> parents: 4937 diff changeset	2433 return true;
e8a2e145c80e cleanup Alain Mazy <am@osimis.io> parents: 4937 diff changeset	2434 }
e8a2e145c80e cleanup Alain Mazy <am@osimis.io> parents: 4937 diff changeset	2435
e8a2e145c80e cleanup Alain Mazy <am@osimis.io> parents: 4937 diff changeset	2436 return false;
e8a2e145c80e cleanup Alain Mazy <am@osimis.io> parents: 4937 diff changeset	2437 }
e8a2e145c80e cleanup Alain Mazy <am@osimis.io> parents: 4937 diff changeset	2438
e8a2e145c80e cleanup Alain Mazy <am@osimis.io> parents: 4937 diff changeset	2439 bool ServerContext::ExpandResource(ExpandedResource& resource,
e8a2e145c80e cleanup Alain Mazy <am@osimis.io> parents: 4937 diff changeset	2440 const std::string& publicId,
4940 304514ce84ee tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags' Alain Mazy <am@osimis.io> parents: 4939 diff changeset	2441 const DicomMap& mainDicomTags, // optional: the main dicom tags for the resource (if already available)
4939 e8a2e145c80e cleanup Alain Mazy <am@osimis.io> parents: 4937 diff changeset	2442 const std::string& instanceId, // optional: the id of an instance for the resource (if already available)
4940 304514ce84ee tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags' Alain Mazy <am@osimis.io> parents: 4939 diff changeset	2443 const Json::Value* dicomAsJson, // optional: the dicom-as-json for the resource (if already available)
4939 e8a2e145c80e cleanup Alain Mazy <am@osimis.io> parents: 4937 diff changeset	2444 ResourceType level,
4940 304514ce84ee tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags' Alain Mazy <am@osimis.io> parents: 4939 diff changeset	2445 const std::set<DicomTag>& requestedTags,
5222 3a61fd50f804 starting refactoring ExpandedResource Sebastien Jodogne <s.jodogne@gmail.com> parents: 5221 diff changeset	2446 ExpandResourceFlags expandFlags,
5058 d4e5ca0c9307 Fix the "Never" option of the "StorageAccessOnFind" that was sill accessing files (bug introduced in 1.11.0) Alain Mazy <am@osimis.io> parents: 5048 diff changeset	2447 bool allowStorageAccess)
4939 e8a2e145c80e cleanup Alain Mazy <am@osimis.io> parents: 4937 diff changeset	2448 {
4940 304514ce84ee tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags' Alain Mazy <am@osimis.io> parents: 4939 diff changeset	2449 // first try to get the tags from what is already available
304514ce84ee tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags' Alain Mazy <am@osimis.io> parents: 4939 diff changeset	2450
5222 3a61fd50f804 starting refactoring ExpandedResource Sebastien Jodogne <s.jodogne@gmail.com> parents: 5221 diff changeset	2451 if ((expandFlags & ExpandResourceFlags_IncludeMainDicomTags) &&
3a61fd50f804 starting refactoring ExpandedResource Sebastien Jodogne <s.jodogne@gmail.com> parents: 5221 diff changeset	2452 mainDicomTags.GetSize() > 0 &&
3a61fd50f804 starting refactoring ExpandedResource Sebastien Jodogne <s.jodogne@gmail.com> parents: 5221 diff changeset	2453 dicomAsJson != NULL)
4940 304514ce84ee tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags' Alain Mazy <am@osimis.io> parents: 4939 diff changeset	2454 {
304514ce84ee tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags' Alain Mazy <am@osimis.io> parents: 4939 diff changeset	2455
5222 3a61fd50f804 starting refactoring ExpandedResource Sebastien Jodogne <s.jodogne@gmail.com> parents: 5221 diff changeset	2456 resource.GetMainDicomTags().Merge(mainDicomTags);
4940 304514ce84ee tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags' Alain Mazy <am@osimis.io> parents: 4939 diff changeset	2457
4984 c8cdf5163cd2 cppcheck Alain Mazy <am@osimis.io> parents: 4981 diff changeset	2458 if (dicomAsJson->isObject())
4940 304514ce84ee tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags' Alain Mazy <am@osimis.io> parents: 4939 diff changeset	2459 {
5222 3a61fd50f804 starting refactoring ExpandedResource Sebastien Jodogne <s.jodogne@gmail.com> parents: 5221 diff changeset	2460 resource.GetMainDicomTags().FromDicomAsJson(*dicomAsJson);
4940 304514ce84ee tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags' Alain Mazy <am@osimis.io> parents: 4939 diff changeset	2461 }
304514ce84ee tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags' Alain Mazy <am@osimis.io> parents: 4939 diff changeset	2462
304514ce84ee tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags' Alain Mazy <am@osimis.io> parents: 4939 diff changeset	2463 std::set<DicomTag> retrievedTags;
304514ce84ee tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags' Alain Mazy <am@osimis.io> parents: 4939 diff changeset	2464 std::set<DicomTag> missingTags;
5222 3a61fd50f804 starting refactoring ExpandedResource Sebastien Jodogne <s.jodogne@gmail.com> parents: 5221 diff changeset	2465 resource.GetMainDicomTags().GetTags(retrievedTags);
4940 304514ce84ee tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags' Alain Mazy <am@osimis.io> parents: 4939 diff changeset	2466
304514ce84ee tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags' Alain Mazy <am@osimis.io> parents: 4939 diff changeset	2467 Toolbox::GetMissingsFromSet(missingTags, requestedTags, retrievedTags);
304514ce84ee tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags' Alain Mazy <am@osimis.io> parents: 4939 diff changeset	2468
304514ce84ee tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags' Alain Mazy <am@osimis.io> parents: 4939 diff changeset	2469 // if all possible tags have been read, no need to get them from DB anymore
304514ce84ee tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags' Alain Mazy <am@osimis.io> parents: 4939 diff changeset	2470 if (missingTags.size() == 0 \|\| DicomMap::HasOnlyComputedTags(missingTags))
304514ce84ee tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags' Alain Mazy <am@osimis.io> parents: 4939 diff changeset	2471 {
5222 3a61fd50f804 starting refactoring ExpandedResource Sebastien Jodogne <s.jodogne@gmail.com> parents: 5221 diff changeset	2472 expandFlags = static_cast<ExpandResourceFlags>(expandFlags & ~ExpandResourceFlags_IncludeMainDicomTags);
4940 304514ce84ee tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags' Alain Mazy <am@osimis.io> parents: 4939 diff changeset	2473 }
304514ce84ee tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags' Alain Mazy <am@osimis.io> parents: 4939 diff changeset	2474
5222 3a61fd50f804 starting refactoring ExpandedResource Sebastien Jodogne <s.jodogne@gmail.com> parents: 5221 diff changeset	2475 if (missingTags.size() == 0 && expandFlags == ExpandResourceFlags_None) // we have already retrieved anything we need
4940 304514ce84ee tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags' Alain Mazy <am@osimis.io> parents: 4939 diff changeset	2476 {
304514ce84ee tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags' Alain Mazy <am@osimis.io> parents: 4939 diff changeset	2477 return true;
304514ce84ee tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags' Alain Mazy <am@osimis.io> parents: 4939 diff changeset	2478 }
304514ce84ee tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags' Alain Mazy <am@osimis.io> parents: 4939 diff changeset	2479 }
304514ce84ee tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags' Alain Mazy <am@osimis.io> parents: 4939 diff changeset	2480
5222 3a61fd50f804 starting refactoring ExpandedResource Sebastien Jodogne <s.jodogne@gmail.com> parents: 5221 diff changeset	2481 if (expandFlags != ExpandResourceFlags_None &&
3a61fd50f804 starting refactoring ExpandedResource Sebastien Jodogne <s.jodogne@gmail.com> parents: 5221 diff changeset	2482 GetIndex().ExpandResource(resource, publicId, level, requestedTags,
3a61fd50f804 starting refactoring ExpandedResource Sebastien Jodogne <s.jodogne@gmail.com> parents: 5221 diff changeset	2483 static_cast<ExpandResourceFlags>(expandFlags \| ExpandResourceFlags_IncludeMetadata))) // we always need the metadata to get the mainDicomTagsSignature
4935 acd3f72e2a21 split ExpandResource in 2: read from DB and serialize to json. This will allow us to merge requested tags from both the DB and the file system Alain Mazy <am@osimis.io> parents: 4921 diff changeset	2484 {
acd3f72e2a21 split ExpandResource in 2: read from DB and serialize to json. This will allow us to merge requested tags from both the DB and the file system Alain Mazy <am@osimis.io> parents: 4921 diff changeset	2485 // check the main dicom tags list has not changed since the resource was stored
5222 3a61fd50f804 starting refactoring ExpandedResource Sebastien Jodogne <s.jodogne@gmail.com> parents: 5221 diff changeset	2486 if (resource.mainDicomTagsSignature_ != DicomMap::GetMainDicomTagsSignature(resource.GetLevel()))
4935 acd3f72e2a21 split ExpandResource in 2: read from DB and serialize to json. This will allow us to merge requested tags from both the DB and the file system Alain Mazy <am@osimis.io> parents: 4921 diff changeset	2487 {
acd3f72e2a21 split ExpandResource in 2: read from DB and serialize to json. This will allow us to merge requested tags from both the DB and the file system Alain Mazy <am@osimis.io> parents: 4921 diff changeset	2488 OrthancConfiguration::ReaderLock lock;
4944 f377d5643538 new Warnings configuration + InstanceAvailability tag Alain Mazy <am@osimis.io> parents: 4941 diff changeset	2489 if (lock.GetConfiguration().IsWarningEnabled(Warnings_002_InconsistentDicomTagsInDb))
4935 acd3f72e2a21 split ExpandResource in 2: read from DB and serialize to json. This will allow us to merge requested tags from both the DB and the file system Alain Mazy <am@osimis.io> parents: 4921 diff changeset	2490 {
5222 3a61fd50f804 starting refactoring ExpandedResource Sebastien Jodogne <s.jodogne@gmail.com> parents: 5221 diff changeset	2491 LOG(WARNING) << "W002: " << Orthanc::GetResourceTypeText(resource.GetLevel(), false , false)
3a61fd50f804 starting refactoring ExpandedResource Sebastien Jodogne <s.jodogne@gmail.com> parents: 5221 diff changeset	2492 << " has been stored with another version of Main Dicom Tags list, you should POST to /"
3a61fd50f804 starting refactoring ExpandedResource Sebastien Jodogne <s.jodogne@gmail.com> parents: 5221 diff changeset	2493 << Orthanc::GetResourceTypeText(resource.GetLevel(), true, false)
3a61fd50f804 starting refactoring ExpandedResource Sebastien Jodogne <s.jodogne@gmail.com> parents: 5221 diff changeset	2494 << "/" << resource.GetPublicId()
3a61fd50f804 starting refactoring ExpandedResource Sebastien Jodogne <s.jodogne@gmail.com> parents: 5221 diff changeset	2495 << "/reconstruct to update the list of tags saved in DB. Some MainDicomTags might be missing from this answer.";
4935 acd3f72e2a21 split ExpandResource in 2: read from DB and serialize to json. This will allow us to merge requested tags from both the DB and the file system Alain Mazy <am@osimis.io> parents: 4921 diff changeset	2496 }
acd3f72e2a21 split ExpandResource in 2: read from DB and serialize to json. This will allow us to merge requested tags from both the DB and the file system Alain Mazy <am@osimis.io> parents: 4921 diff changeset	2497 }
acd3f72e2a21 split ExpandResource in 2: read from DB and serialize to json. This will allow us to merge requested tags from both the DB and the file system Alain Mazy <am@osimis.io> parents: 4921 diff changeset	2498
4937 3f9b9865c8cc include requested tags from storage if needed Alain Mazy <am@osimis.io> parents: 4936 diff changeset	2499 // possibly merge missing requested tags from dicom-as-json
5222 3a61fd50f804 starting refactoring ExpandedResource Sebastien Jodogne <s.jodogne@gmail.com> parents: 5221 diff changeset	2500 if (allowStorageAccess &&
3a61fd50f804 starting refactoring ExpandedResource Sebastien Jodogne <s.jodogne@gmail.com> parents: 5221 diff changeset	2501 !resource.missingRequestedTags_.empty() &&
3a61fd50f804 starting refactoring ExpandedResource Sebastien Jodogne <s.jodogne@gmail.com> parents: 5221 diff changeset	2502 !DicomMap::HasOnlyComputedTags(resource.missingRequestedTags_))
4937 3f9b9865c8cc include requested tags from storage if needed Alain Mazy <am@osimis.io> parents: 4936 diff changeset	2503 {
4941 96a3e81eba90 performance warning Alain Mazy <am@osimis.io> parents: 4940 diff changeset	2504 OrthancConfiguration::ReaderLock lock;
4944 f377d5643538 new Warnings configuration + InstanceAvailability tag Alain Mazy <am@osimis.io> parents: 4941 diff changeset	2505 if (lock.GetConfiguration().IsWarningEnabled(Warnings_001_TagsBeingReadFromStorage))
4941 96a3e81eba90 performance warning Alain Mazy <am@osimis.io> parents: 4940 diff changeset	2506 {
96a3e81eba90 performance warning Alain Mazy <am@osimis.io> parents: 4940 diff changeset	2507 std::set<DicomTag> missingTags;
96a3e81eba90 performance warning Alain Mazy <am@osimis.io> parents: 4940 diff changeset	2508 Toolbox::AppendSets(missingTags, resource.missingRequestedTags_);
4981 d0c34145320c cppcheck Sebastien Jodogne <s.jodogne@gmail.com> parents: 4978 diff changeset	2509 for (std::set<DicomTag>::const_iterator it = resource.missingRequestedTags_.begin(); it != resource.missingRequestedTags_.end(); ++it)
4941 96a3e81eba90 performance warning Alain Mazy <am@osimis.io> parents: 4940 diff changeset	2510 {
96a3e81eba90 performance warning Alain Mazy <am@osimis.io> parents: 4940 diff changeset	2511 if (DicomMap::IsComputedTag(*it))
96a3e81eba90 performance warning Alain Mazy <am@osimis.io> parents: 4940 diff changeset	2512 {
96a3e81eba90 performance warning Alain Mazy <am@osimis.io> parents: 4940 diff changeset	2513 missingTags.erase(*it);
96a3e81eba90 performance warning Alain Mazy <am@osimis.io> parents: 4940 diff changeset	2514 }
96a3e81eba90 performance warning Alain Mazy <am@osimis.io> parents: 4940 diff changeset	2515 }
96a3e81eba90 performance warning Alain Mazy <am@osimis.io> parents: 4940 diff changeset	2516
96a3e81eba90 performance warning Alain Mazy <am@osimis.io> parents: 4940 diff changeset	2517 std::string missings;
96a3e81eba90 performance warning Alain Mazy <am@osimis.io> parents: 4940 diff changeset	2518 FromDcmtkBridge::FormatListOfTags(missings, missingTags);
96a3e81eba90 performance warning Alain Mazy <am@osimis.io> parents: 4940 diff changeset	2519
5222 3a61fd50f804 starting refactoring ExpandedResource Sebastien Jodogne <s.jodogne@gmail.com> parents: 5221 diff changeset	2520 LOG(WARNING) << "W001: Accessing Dicom tags from storage when accessing "
3a61fd50f804 starting refactoring ExpandedResource Sebastien Jodogne <s.jodogne@gmail.com> parents: 5221 diff changeset	2521 << Orthanc::GetResourceTypeText(resource.GetLevel(), false, false)
3a61fd50f804 starting refactoring ExpandedResource Sebastien Jodogne <s.jodogne@gmail.com> parents: 5221 diff changeset	2522 << " : " << missings;
4941 96a3e81eba90 performance warning Alain Mazy <am@osimis.io> parents: 4940 diff changeset	2523 }
96a3e81eba90 performance warning Alain Mazy <am@osimis.io> parents: 4940 diff changeset	2524
96a3e81eba90 performance warning Alain Mazy <am@osimis.io> parents: 4940 diff changeset	2525
4937 3f9b9865c8cc include requested tags from storage if needed Alain Mazy <am@osimis.io> parents: 4936 diff changeset	2526 std::string instanceId_ = instanceId;
4940 304514ce84ee tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags' Alain Mazy <am@osimis.io> parents: 4939 diff changeset	2527 DicomMap tagsFromJson;
304514ce84ee tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags' Alain Mazy <am@osimis.io> parents: 4939 diff changeset	2528
304514ce84ee tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags' Alain Mazy <am@osimis.io> parents: 4939 diff changeset	2529 if (dicomAsJson == NULL)
4937 3f9b9865c8cc include requested tags from storage if needed Alain Mazy <am@osimis.io> parents: 4936 diff changeset	2530 {
3f9b9865c8cc include requested tags from storage if needed Alain Mazy <am@osimis.io> parents: 4936 diff changeset	2531 if (instanceId_.empty())
3f9b9865c8cc include requested tags from storage if needed Alain Mazy <am@osimis.io> parents: 4936 diff changeset	2532 {
3f9b9865c8cc include requested tags from storage if needed Alain Mazy <am@osimis.io> parents: 4936 diff changeset	2533 if (level == ResourceType_Instance)
3f9b9865c8cc include requested tags from storage if needed Alain Mazy <am@osimis.io> parents: 4936 diff changeset	2534 {
3f9b9865c8cc include requested tags from storage if needed Alain Mazy <am@osimis.io> parents: 4936 diff changeset	2535 instanceId_ = publicId;
3f9b9865c8cc include requested tags from storage if needed Alain Mazy <am@osimis.io> parents: 4936 diff changeset	2536 }
3f9b9865c8cc include requested tags from storage if needed Alain Mazy <am@osimis.io> parents: 4936 diff changeset	2537 else
3f9b9865c8cc include requested tags from storage if needed Alain Mazy <am@osimis.io> parents: 4936 diff changeset	2538 {
3f9b9865c8cc include requested tags from storage if needed Alain Mazy <am@osimis.io> parents: 4936 diff changeset	2539 std::list<std::string> instancesIds;
3f9b9865c8cc include requested tags from storage if needed Alain Mazy <am@osimis.io> parents: 4936 diff changeset	2540 GetIndex().GetChildInstances(instancesIds, publicId);
3f9b9865c8cc include requested tags from storage if needed Alain Mazy <am@osimis.io> parents: 4936 diff changeset	2541 if (instancesIds.size() < 1)
3f9b9865c8cc include requested tags from storage if needed Alain Mazy <am@osimis.io> parents: 4936 diff changeset	2542 {
3f9b9865c8cc include requested tags from storage if needed Alain Mazy <am@osimis.io> parents: 4936 diff changeset	2543 throw OrthancException(ErrorCode_InternalError, "ExpandResource: no instances found");
3f9b9865c8cc include requested tags from storage if needed Alain Mazy <am@osimis.io> parents: 4936 diff changeset	2544 }
3f9b9865c8cc include requested tags from storage if needed Alain Mazy <am@osimis.io> parents: 4936 diff changeset	2545 instanceId_ = instancesIds.front();
3f9b9865c8cc include requested tags from storage if needed Alain Mazy <am@osimis.io> parents: 4936 diff changeset	2546 }
3f9b9865c8cc include requested tags from storage if needed Alain Mazy <am@osimis.io> parents: 4936 diff changeset	2547 }
3f9b9865c8cc include requested tags from storage if needed Alain Mazy <am@osimis.io> parents: 4936 diff changeset	2548
4940 304514ce84ee tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags' Alain Mazy <am@osimis.io> parents: 4939 diff changeset	2549 Json::Value tmpDicomAsJson;
5036 877bc3b96476 Handle Dicom sequences in ExtraMainDicomTags and save them in the 'MainDicomSequences' metadata Alain Mazy <am@osimis.io> parents: 4994 diff changeset	2550 ReadDicomAsJson(tmpDicomAsJson, instanceId_, resource.missingRequestedTags_ /* ignoreTagLength */); // read all tags from DICOM and avoid cropping requested tags
5044 6fed78e13233 Refactored DicomMap to handle sequences when needed Alain Mazy <am@osimis.io> parents: 5043 diff changeset	2551 tagsFromJson.FromDicomAsJson(tmpDicomAsJson, false /* append /, true / parseSequences*/);
4940 304514ce84ee tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags' Alain Mazy <am@osimis.io> parents: 4939 diff changeset	2552 }
304514ce84ee tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags' Alain Mazy <am@osimis.io> parents: 4939 diff changeset	2553 else
304514ce84ee tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags' Alain Mazy <am@osimis.io> parents: 4939 diff changeset	2554 {
5044 6fed78e13233 Refactored DicomMap to handle sequences when needed Alain Mazy <am@osimis.io> parents: 5043 diff changeset	2555 tagsFromJson.FromDicomAsJson(dicomAsJson, false / append /, true / parseSequences*/);
4937 3f9b9865c8cc include requested tags from storage if needed Alain Mazy <am@osimis.io> parents: 4936 diff changeset	2556 }
3f9b9865c8cc include requested tags from storage if needed Alain Mazy <am@osimis.io> parents: 4936 diff changeset	2557
5222 3a61fd50f804 starting refactoring ExpandedResource Sebastien Jodogne <s.jodogne@gmail.com> parents: 5221 diff changeset	2558 resource.GetMainDicomTags().Merge(tagsFromJson);
4937 3f9b9865c8cc include requested tags from storage if needed Alain Mazy <am@osimis.io> parents: 4936 diff changeset	2559 }
4935 acd3f72e2a21 split ExpandResource in 2: read from DB and serialize to json. This will allow us to merge requested tags from both the DB and the file system Alain Mazy <am@osimis.io> parents: 4921 diff changeset	2560
4940 304514ce84ee tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags' Alain Mazy <am@osimis.io> parents: 4939 diff changeset	2561 // compute the requested tags
304514ce84ee tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags' Alain Mazy <am@osimis.io> parents: 4939 diff changeset	2562 ComputeTags(resource, *this, publicId, level, requestedTags);
304514ce84ee tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags' Alain Mazy <am@osimis.io> parents: 4939 diff changeset	2563 }
304514ce84ee tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags' Alain Mazy <am@osimis.io> parents: 4939 diff changeset	2564 else
304514ce84ee tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags' Alain Mazy <am@osimis.io> parents: 4939 diff changeset	2565 {
304514ce84ee tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags' Alain Mazy <am@osimis.io> parents: 4939 diff changeset	2566 return false;
4935 acd3f72e2a21 split ExpandResource in 2: read from DB and serialize to json. This will allow us to merge requested tags from both the DB and the file system Alain Mazy <am@osimis.io> parents: 4921 diff changeset	2567 }
acd3f72e2a21 split ExpandResource in 2: read from DB and serialize to json. This will allow us to merge requested tags from both the DB and the file system Alain Mazy <am@osimis.io> parents: 4921 diff changeset	2568
4940 304514ce84ee tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags' Alain Mazy <am@osimis.io> parents: 4939 diff changeset	2569 return true;
4935 acd3f72e2a21 split ExpandResource in 2: read from DB and serialize to json. This will allow us to merge requested tags from both the DB and the file system Alain Mazy <am@osimis.io> parents: 4921 diff changeset	2570 }
acd3f72e2a21 split ExpandResource in 2: read from DB and serialize to json. This will allow us to merge requested tags from both the DB and the file system Alain Mazy <am@osimis.io> parents: 4921 diff changeset	2571
5111 7547c7dfd017 /tools/metrics-prometheus: added orthanc_last_change and orthanc_up_time_s Alain Mazy <am@osimis.io> parents: 5060 diff changeset	2572 int64_t ServerContext::GetServerUpTime() const
7547c7dfd017 /tools/metrics-prometheus: added orthanc_last_change and orthanc_up_time_s Alain Mazy <am@osimis.io> parents: 5060 diff changeset	2573 {
7547c7dfd017 /tools/metrics-prometheus: added orthanc_last_change and orthanc_up_time_s Alain Mazy <am@osimis.io> parents: 5060 diff changeset	2574 boost::posix_time::ptime nowUtc = boost::posix_time::second_clock::universal_time();
7547c7dfd017 /tools/metrics-prometheus: added orthanc_last_change and orthanc_up_time_s Alain Mazy <am@osimis.io> parents: 5060 diff changeset	2575 boost::posix_time::time_duration elapsed = nowUtc - serverStartTimeUtc_;
7547c7dfd017 /tools/metrics-prometheus: added orthanc_last_change and orthanc_up_time_s Alain Mazy <am@osimis.io> parents: 5060 diff changeset	2576
7547c7dfd017 /tools/metrics-prometheus: added orthanc_last_change and orthanc_up_time_s Alain Mazy <am@osimis.io> parents: 5060 diff changeset	2577 return elapsed.total_seconds();
7547c7dfd017 /tools/metrics-prometheus: added orthanc_last_change and orthanc_up_time_s Alain Mazy <am@osimis.io> parents: 5060 diff changeset	2578 }
7547c7dfd017 /tools/metrics-prometheus: added orthanc_last_change and orthanc_up_time_s Alain Mazy <am@osimis.io> parents: 5060 diff changeset	2579
224 4eb0c7ce86c9 refactoring for store Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	2580 }

Mercurial > hg > orthanc

annotate OrthancServer/Sources/ServerContext.cpp @ 5365:5653527a2b1d