Mercurial > hg > orthanc
annotate Core/DicomParsing/ParsedDicomFile.cpp @ 2471:51ea632f0c55
removed 'in Lua script' in error messages that is misleading since these commands can also be called from the API
| author | amazy |
|---|---|
| date | Wed, 17 Jan 2018 21:33:56 +0100 |
| parents | 878b59270859 |
| children | 83b8b6743531 |
| rev | line source |
|---|---|
| 790 | 1 /** |
| 2 * Orthanc - A Lightweight, RESTful DICOM Store | |
| 1900 | 3 * Copyright (C) 2012-2016 Sebastien Jodogne, Medical Physics |
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4 * Department, University Hospital of Liege, Belgium |
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5 * Copyright (C) 2017-2018 Osimis S.A., Belgium |
| 790 | 6 * |
| 7 * This program is free software: you can redistribute it and/or | |
| 8 * modify it under the terms of the GNU General Public License as | |
| 9 * published by the Free Software Foundation, either version 3 of the | |
| 10 * License, or (at your option) any later version. | |
| 11 * | |
| 12 * In addition, as a special exception, the copyright holders of this | |
| 13 * program give permission to link the code of its release with the | |
| 14 * OpenSSL project's "OpenSSL" library (or with modified versions of it | |
| 15 * that use the same license as the "OpenSSL" library), and distribute | |
| 16 * the linked executables. You must obey the GNU General Public License | |
| 17 * in all respects for all of the code used other than "OpenSSL". If you | |
| 18 * modify file(s) with this exception, you may extend this exception to | |
| 19 * your version of the file(s), but you are not obligated to do so. If | |
| 20 * you do not wish to do so, delete this exception statement from your | |
| 21 * version. If you delete this exception statement from all source files | |
| 22 * in the program, then also delete it here. | |
| 23 * | |
| 24 * This program is distributed in the hope that it will be useful, but | |
| 25 * WITHOUT ANY WARRANTY; without even the implied warranty of | |
| 26 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU | |
| 27 * General Public License for more details. | |
| 28 * | |
| 29 * You should have received a copy of the GNU General Public License | |
| 30 * along with this program. If not, see <http://www.gnu.org/licenses/>. | |
| 31 **/ | |
| 32 | |
| 33 | |
| 34 | |
| 35 /*========================================================================= | |
| 36 | |
| 37 This file is based on portions of the following project: | |
| 38 | |
| 39 Program: GDCM (Grassroots DICOM). A DICOM library | |
| 40 Module: http://gdcm.sourceforge.net/Copyright.html | |
| 41 | |
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42 Copyright (c) 2006-2011 Mathieu Malaterre |
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43 Copyright (c) 1993-2005 CREATIS |
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44 (CREATIS = Centre de Recherche et d'Applications en Traitement de l'Image) |
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45 All rights reserved. |
| 790 | 46 |
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47 Redistribution and use in source and binary forms, with or without |
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48 modification, are permitted provided that the following conditions are met: |
| 790 | 49 |
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50 * Redistributions of source code must retain the above copyright notice, |
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51 this list of conditions and the following disclaimer. |
| 790 | 52 |
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53 * Redistributions in binary form must reproduce the above copyright notice, |
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54 this list of conditions and the following disclaimer in the documentation |
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55 and/or other materials provided with the distribution. |
| 790 | 56 |
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57 * Neither name of Mathieu Malaterre, or CREATIS, nor the names of any |
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58 contributors (CNRS, INSERM, UCB, Universite Lyon I), may be used to |
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59 endorse or promote products derived from this software without specific |
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60 prior written permission. |
| 790 | 61 |
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62 THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS ``AS IS'' |
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63 AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE |
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64 IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE |
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65 ARE DISCLAIMED. IN NO EVENT SHALL THE AUTHORS OR CONTRIBUTORS BE LIABLE FOR |
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66 ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL |
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67 DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR |
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68 SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER |
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69 CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, |
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70 OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE |
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71 OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE. |
| 790 | 72 |
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73 =========================================================================*/ |
| 790 | 74 |
| 75 | |
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76 #include "../PrecompiledHeaders.h" |
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77 |
| 790 | 78 #ifndef NOMINMAX |
| 79 #define NOMINMAX | |
| 80 #endif | |
| 81 | |
| 82 #include "ParsedDicomFile.h" | |
| 83 | |
| 84 #include "FromDcmtkBridge.h" | |
| 85 #include "ToDcmtkBridge.h" | |
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86 #include "Internals/DicomFrameIndex.h" |
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87 #include "../Logging.h" |
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88 #include "../OrthancException.h" |
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89 #include "../Toolbox.h" |
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90 #include "../SystemToolbox.h" |
| 790 | 91 |
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92 #if ORTHANC_ENABLE_JPEG == 1 |
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93 # include "../Images/JpegReader.h" |
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94 #endif |
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95 |
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96 #if ORTHANC_ENABLE_PNG == 1 |
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97 # include "../Images/PngReader.h" |
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98 #endif |
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99 |
| 790 | 100 #include <list> |
| 101 #include <limits> | |
| 102 | |
| 103 #include <boost/lexical_cast.hpp> | |
| 104 | |
| 105 #include <dcmtk/dcmdata/dcchrstr.h> | |
| 106 #include <dcmtk/dcmdata/dcdicent.h> | |
| 107 #include <dcmtk/dcmdata/dcdict.h> | |
| 108 #include <dcmtk/dcmdata/dcfilefo.h> | |
| 109 #include <dcmtk/dcmdata/dcuid.h> | |
| 110 #include <dcmtk/dcmdata/dcmetinf.h> | |
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111 #include <dcmtk/dcmdata/dcdeftag.h> |
| 790 | 112 |
| 113 #include <dcmtk/dcmdata/dcvrae.h> | |
| 114 #include <dcmtk/dcmdata/dcvras.h> | |
| 115 #include <dcmtk/dcmdata/dcvrcs.h> | |
| 116 #include <dcmtk/dcmdata/dcvrda.h> | |
| 117 #include <dcmtk/dcmdata/dcvrds.h> | |
| 118 #include <dcmtk/dcmdata/dcvrdt.h> | |
| 119 #include <dcmtk/dcmdata/dcvrfd.h> | |
| 120 #include <dcmtk/dcmdata/dcvrfl.h> | |
| 121 #include <dcmtk/dcmdata/dcvris.h> | |
| 122 #include <dcmtk/dcmdata/dcvrlo.h> | |
| 123 #include <dcmtk/dcmdata/dcvrlt.h> | |
| 124 #include <dcmtk/dcmdata/dcvrpn.h> | |
| 125 #include <dcmtk/dcmdata/dcvrsh.h> | |
| 126 #include <dcmtk/dcmdata/dcvrsl.h> | |
| 127 #include <dcmtk/dcmdata/dcvrss.h> | |
| 128 #include <dcmtk/dcmdata/dcvrst.h> | |
| 129 #include <dcmtk/dcmdata/dcvrtm.h> | |
| 130 #include <dcmtk/dcmdata/dcvrui.h> | |
| 131 #include <dcmtk/dcmdata/dcvrul.h> | |
| 132 #include <dcmtk/dcmdata/dcvrus.h> | |
| 133 #include <dcmtk/dcmdata/dcvrut.h> | |
| 134 #include <dcmtk/dcmdata/dcpixel.h> | |
| 135 #include <dcmtk/dcmdata/dcpixseq.h> | |
| 136 #include <dcmtk/dcmdata/dcpxitem.h> | |
| 137 | |
| 138 | |
| 139 #include <boost/math/special_functions/round.hpp> | |
| 140 #include <dcmtk/dcmdata/dcostrmb.h> | |
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141 #include <boost/algorithm/string/predicate.hpp> |
| 790 | 142 |
| 143 | |
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144 #if DCMTK_VERSION_NUMBER <= 360 |
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145 # define EXS_JPEGProcess1 EXS_JPEGProcess1TransferSyntax |
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146 #endif |
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147 |
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148 |
| 790 | 149 |
| 150 namespace Orthanc | |
| 151 { | |
| 794 | 152 struct ParsedDicomFile::PImpl |
| 153 { | |
| 154 std::auto_ptr<DcmFileFormat> file_; | |
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155 std::auto_ptr<DicomFrameIndex> frameIndex_; |
| 794 | 156 }; |
| 157 | |
| 158 | |
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159 #if ORTHANC_ENABLE_CIVETWEB == 1 || ORTHANC_ENABLE_MONGOOSE == 1 |
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160 static const char* CONTENT_TYPE_OCTET_STREAM = "application/octet-stream"; |
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161 |
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162 static void ParseTagAndGroup(DcmTagKey& key, |
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163 const std::string& tag) |
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164 { |
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165 DicomTag t = FromDcmtkBridge::ParseTag(tag); |
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166 key = DcmTagKey(t.GetGroup(), t.GetElement()); |
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167 } |
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168 |
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169 |
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170 static unsigned int GetPixelDataBlockCount(DcmPixelData& pixelData, |
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171 E_TransferSyntax transferSyntax) |
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172 { |
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173 DcmPixelSequence* pixelSequence = NULL; |
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174 if (pixelData.getEncapsulatedRepresentation |
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175 (transferSyntax, NULL, pixelSequence).good() && pixelSequence) |
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176 { |
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177 return pixelSequence->card(); |
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178 } |
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179 else |
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180 { |
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181 return 1; |
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182 } |
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183 } |
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184 |
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185 |
| 790 | 186 static void SendPathValueForDictionary(RestApiOutput& output, |
| 187 DcmItem& dicom) | |
| 188 { | |
| 189 Json::Value v = Json::arrayValue; | |
| 190 | |
| 191 for (unsigned long i = 0; i < dicom.card(); i++) | |
| 192 { | |
| 193 DcmElement* element = dicom.getElement(i); | |
| 194 if (element) | |
| 195 { | |
| 196 char buf[16]; | |
| 197 sprintf(buf, "%04x-%04x", element->getTag().getGTag(), element->getTag().getETag()); | |
| 198 v.append(buf); | |
| 199 } | |
| 200 } | |
| 201 | |
| 202 output.AnswerJson(v); | |
| 203 } | |
| 204 | |
| 205 | |
| 206 static void SendSequence(RestApiOutput& output, | |
| 207 DcmSequenceOfItems& sequence) | |
| 208 { | |
| 209 // This element is a sequence | |
| 210 Json::Value v = Json::arrayValue; | |
| 211 | |
| 212 for (unsigned long i = 0; i < sequence.card(); i++) | |
| 213 { | |
| 214 v.append(boost::lexical_cast<std::string>(i)); | |
| 215 } | |
| 216 | |
| 217 output.AnswerJson(v); | |
| 218 } | |
| 219 | |
| 220 | |
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221 namespace |
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223 class DicomFieldStream : public IHttpStreamAnswer |
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224 { |
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225 private: |
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226 DcmElement& element_; |
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227 uint32_t length_; |
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228 uint32_t offset_; |
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229 std::string chunk_; |
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230 size_t chunkSize_; |
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231 |
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232 public: |
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233 DicomFieldStream(DcmElement& element, |
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234 E_TransferSyntax transferSyntax) : |
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235 element_(element), |
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236 length_(element.getLength(transferSyntax)), |
| 1616 | 237 offset_(0), |
| 238 chunkSize_(0) | |
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239 { |
| 1521 | 240 static const size_t CHUNK_SIZE = 64 * 1024; // Use chunks of max 64KB |
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241 chunk_.resize(CHUNK_SIZE); |
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242 } |
| 790 | 243 |
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244 virtual HttpCompression SetupHttpCompression(bool /*gzipAllowed*/, |
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245 bool /*deflateAllowed*/) |
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246 { |
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247 // No support for compression |
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248 return HttpCompression_None; |
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249 } |
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251 virtual bool HasContentFilename(std::string& filename) |
| 790 | 252 { |
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253 return false; |
| 790 | 254 } |
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255 |
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256 virtual std::string GetContentType() |
| 790 | 257 { |
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258 return ""; |
| 790 | 259 } |
| 260 | |
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261 virtual uint64_t GetContentLength() |
| 790 | 262 { |
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263 return length_; |
| 790 | 264 } |
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265 |
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266 virtual bool ReadNextChunk() |
| 790 | 267 { |
| 1520 | 268 assert(offset_ <= length_); |
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269 |
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270 if (offset_ == length_) |
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271 { |
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272 return false; |
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273 } |
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274 else |
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275 { |
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276 if (length_ - offset_ < chunk_.size()) |
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277 { |
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278 chunkSize_ = length_ - offset_; |
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279 } |
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280 else |
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281 { |
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282 chunkSize_ = chunk_.size(); |
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283 } |
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284 |
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285 OFCondition cond = element_.getPartialValue(&chunk_[0], offset_, chunkSize_); |
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286 |
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287 offset_ += chunkSize_; |
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288 |
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289 if (!cond.good()) |
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290 { |
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291 LOG(ERROR) << "Error while sending a DICOM field: " << cond.text(); |
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292 throw OrthancException(ErrorCode_InternalError); |
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293 } |
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294 |
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295 return true; |
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296 } |
| 790 | 297 } |
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298 |
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299 virtual const char *GetChunkContent() |
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300 { |
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301 return chunk_.c_str(); |
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302 } |
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303 |
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304 virtual size_t GetChunkSize() |
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305 { |
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306 return chunkSize_; |
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307 } |
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308 }; |
| 790 | 309 } |
| 310 | |
| 311 | |
| 312 static bool AnswerPixelData(RestApiOutput& output, | |
| 313 DcmItem& dicom, | |
| 314 E_TransferSyntax transferSyntax, | |
| 315 const std::string* blockUri) | |
| 316 { | |
| 317 DcmTag k(DICOM_TAG_PIXEL_DATA.GetGroup(), | |
| 318 DICOM_TAG_PIXEL_DATA.GetElement()); | |
| 319 | |
| 320 DcmElement *element = NULL; | |
| 321 if (!dicom.findAndGetElement(k, element).good() || | |
| 322 element == NULL) | |
| 323 { | |
| 324 return false; | |
| 325 } | |
| 326 | |
| 327 try | |
| 328 { | |
| 329 DcmPixelData& pixelData = dynamic_cast<DcmPixelData&>(*element); | |
| 330 if (blockUri == NULL) | |
| 331 { | |
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332 // The user asks how many blocks are present in this pixel data |
| 790 | 333 unsigned int blocks = GetPixelDataBlockCount(pixelData, transferSyntax); |
| 334 | |
| 335 Json::Value result(Json::arrayValue); | |
| 336 for (unsigned int i = 0; i < blocks; i++) | |
| 337 { | |
| 338 result.append(boost::lexical_cast<std::string>(i)); | |
| 339 } | |
| 340 | |
| 341 output.AnswerJson(result); | |
| 342 return true; | |
| 343 } | |
| 344 | |
| 345 | |
| 346 unsigned int block = boost::lexical_cast<unsigned int>(*blockUri); | |
| 347 | |
| 348 if (block < GetPixelDataBlockCount(pixelData, transferSyntax)) | |
| 349 { | |
| 350 DcmPixelSequence* pixelSequence = NULL; | |
| 351 if (pixelData.getEncapsulatedRepresentation | |
| 352 (transferSyntax, NULL, pixelSequence).good() && pixelSequence) | |
| 353 { | |
| 354 // This is the case for JPEG transfer syntaxes | |
| 355 if (block < pixelSequence->card()) | |
| 356 { | |
| 357 DcmPixelItem* pixelItem = NULL; | |
| 358 if (pixelSequence->getItem(pixelItem, block).good() && pixelItem) | |
| 359 { | |
| 360 if (pixelItem->getLength() == 0) | |
| 361 { | |
| 362 output.AnswerBuffer(NULL, 0, CONTENT_TYPE_OCTET_STREAM); | |
| 363 return true; | |
| 364 } | |
| 365 | |
| 366 Uint8* buffer = NULL; | |
| 367 if (pixelItem->getUint8Array(buffer).good() && buffer) | |
| 368 { | |
| 369 output.AnswerBuffer(buffer, pixelItem->getLength(), CONTENT_TYPE_OCTET_STREAM); | |
| 370 return true; | |
| 371 } | |
| 372 } | |
| 373 } | |
| 374 } | |
| 375 else | |
| 376 { | |
| 377 // This is the case for raw, uncompressed image buffers | |
| 378 assert(*blockUri == "0"); | |
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379 DicomFieldStream stream(*element, transferSyntax); |
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380 output.AnswerStream(stream); |
| 790 | 381 } |
| 382 } | |
| 383 } | |
| 384 catch (boost::bad_lexical_cast&) | |
| 385 { | |
| 386 // The URI entered by the user is not a number | |
| 387 } | |
| 388 catch (std::bad_cast&) | |
| 389 { | |
| 390 // This should never happen | |
| 391 } | |
| 392 | |
| 393 return false; | |
| 394 } | |
| 395 | |
| 396 | |
| 397 static void SendPathValueForLeaf(RestApiOutput& output, | |
| 398 const std::string& tag, | |
| 399 DcmItem& dicom, | |
| 400 E_TransferSyntax transferSyntax) | |
| 401 { | |
| 402 DcmTagKey k; | |
| 403 ParseTagAndGroup(k, tag); | |
| 404 | |
| 405 DcmSequenceOfItems* sequence = NULL; | |
| 406 if (dicom.findAndGetSequence(k, sequence).good() && | |
| 407 sequence != NULL && | |
| 408 sequence->getVR() == EVR_SQ) | |
| 409 { | |
| 410 SendSequence(output, *sequence); | |
| 411 return; | |
| 412 } | |
| 413 | |
| 414 DcmElement* element = NULL; | |
| 415 if (dicom.findAndGetElement(k, element).good() && | |
| 416 element != NULL && | |
| 417 //element->getVR() != EVR_UNKNOWN && // This would forbid private tags | |
| 418 element->getVR() != EVR_SQ) | |
| 419 { | |
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420 DicomFieldStream stream(*element, transferSyntax); |
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421 output.AnswerStream(stream); |
| 790 | 422 } |
| 423 } | |
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424 #endif |
| 790 | 425 |
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426 |
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427 static inline uint16_t GetCharValue(char c) |
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428 { |
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429 if (c >= '0' && c <= '9') |
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430 return c - '0'; |
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431 else if (c >= 'a' && c <= 'f') |
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432 return c - 'a' + 10; |
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433 else if (c >= 'A' && c <= 'F') |
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434 return c - 'A' + 10; |
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435 else |
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436 return 0; |
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437 } |
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438 |
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439 |
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440 static inline uint16_t GetTagValue(const char* c) |
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441 { |
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442 return ((GetCharValue(c[0]) << 12) + |
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443 (GetCharValue(c[1]) << 8) + |
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444 (GetCharValue(c[2]) << 4) + |
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445 GetCharValue(c[3])); |
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446 } |
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447 |
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448 |
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449 #if ORTHANC_ENABLE_CIVETWEB == 1 || ORTHANC_ENABLE_MONGOOSE == 1 |
| 790 | 450 void ParsedDicomFile::SendPathValue(RestApiOutput& output, |
| 451 const UriComponents& uri) | |
| 452 { | |
| 794 | 453 DcmItem* dicom = pimpl_->file_->getDataset(); |
| 454 E_TransferSyntax transferSyntax = pimpl_->file_->getDataset()->getOriginalXfer(); | |
| 790 | 455 |
| 456 // Special case: Accessing the pixel data | |
| 457 if (uri.size() == 1 || | |
| 458 uri.size() == 2) | |
| 459 { | |
| 460 DcmTagKey tag; | |
| 461 ParseTagAndGroup(tag, uri[0]); | |
| 462 | |
| 463 if (tag.getGroup() == DICOM_TAG_PIXEL_DATA.GetGroup() && | |
| 464 tag.getElement() == DICOM_TAG_PIXEL_DATA.GetElement()) | |
| 465 { | |
| 466 AnswerPixelData(output, *dicom, transferSyntax, uri.size() == 1 ? NULL : &uri[1]); | |
| 467 return; | |
| 468 } | |
| 469 } | |
| 470 | |
| 471 // Go down in the tag hierarchy according to the URI | |
| 472 for (size_t pos = 0; pos < uri.size() / 2; pos++) | |
| 473 { | |
| 474 size_t index; | |
| 475 try | |
| 476 { | |
| 477 index = boost::lexical_cast<size_t>(uri[2 * pos + 1]); | |
| 478 } | |
| 479 catch (boost::bad_lexical_cast&) | |
| 480 { | |
| 481 return; | |
| 482 } | |
| 483 | |
| 484 DcmTagKey k; | |
| 485 DcmItem *child = NULL; | |
| 486 ParseTagAndGroup(k, uri[2 * pos]); | |
| 487 if (!dicom->findAndGetSequenceItem(k, child, index).good() || | |
| 488 child == NULL) | |
| 489 { | |
| 490 return; | |
| 491 } | |
| 492 | |
| 493 dicom = child; | |
| 494 } | |
| 495 | |
| 496 // We have reached the end of the URI | |
| 497 if (uri.size() % 2 == 0) | |
| 498 { | |
| 499 SendPathValueForDictionary(output, *dicom); | |
| 500 } | |
| 501 else | |
| 502 { | |
| 503 SendPathValueForLeaf(output, uri.back(), *dicom, transferSyntax); | |
| 504 } | |
| 505 } | |
|
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506 #endif |
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507 |
| 790 | 508 |
| 509 void ParsedDicomFile::Remove(const DicomTag& tag) | |
| 510 { | |
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511 InvalidateCache(); |
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512 |
| 790 | 513 DcmTagKey key(tag.GetGroup(), tag.GetElement()); |
| 794 | 514 DcmElement* element = pimpl_->file_->getDataset()->remove(key); |
| 790 | 515 if (element != NULL) |
| 516 { | |
| 517 delete element; | |
| 518 } | |
| 519 } | |
| 520 | |
| 521 | |
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522 void ParsedDicomFile::Clear(const DicomTag& tag, |
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523 bool onlyIfExists) |
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524 { |
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525 InvalidateCache(); |
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526 |
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527 DcmItem* dicom = pimpl_->file_->getDataset(); |
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528 DcmTagKey key(tag.GetGroup(), tag.GetElement()); |
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529 |
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530 if (onlyIfExists && |
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531 !dicom->tagExists(key)) |
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532 { |
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533 // The tag is non-existing, do not clear it |
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534 } |
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535 else |
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536 { |
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537 if (!dicom->insertEmptyElement(key, OFTrue /* replace old value */).good()) |
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538 { |
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539 throw OrthancException(ErrorCode_InternalError); |
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540 } |
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541 } |
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542 } |
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543 |
| 790 | 544 |
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545 void ParsedDicomFile::RemovePrivateTagsInternal(const std::set<DicomTag>* toKeep) |
| 790 | 546 { |
|
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547 InvalidateCache(); |
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548 |
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549 DcmDataset& dataset = *pimpl_->file_->getDataset(); |
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550 |
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551 // Loop over the dataset to detect its private tags |
| 790 | 552 typedef std::list<DcmElement*> Tags; |
| 553 Tags privateTags; | |
| 554 | |
| 555 for (unsigned long i = 0; i < dataset.card(); i++) | |
| 556 { | |
| 557 DcmElement* element = dataset.getElement(i); | |
| 558 DcmTag tag(element->getTag()); | |
|
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559 |
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560 // Is this a private tag? |
| 1694 | 561 if (tag.isPrivate()) |
| 790 | 562 { |
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563 bool remove = true; |
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564 |
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565 // Check whether this private tag is to be kept |
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566 if (toKeep != NULL) |
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567 { |
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568 DicomTag tmp = FromDcmtkBridge::Convert(tag); |
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569 if (toKeep->find(tmp) != toKeep->end()) |
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570 { |
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571 remove = false; // Keep it |
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572 } |
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573 } |
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574 |
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575 if (remove) |
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576 { |
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577 privateTags.push_back(element); |
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578 } |
| 790 | 579 } |
| 580 } | |
| 581 | |
|
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582 // Loop over the detected private tags to remove them |
| 790 | 583 for (Tags::iterator it = privateTags.begin(); |
| 584 it != privateTags.end(); ++it) | |
| 585 { | |
| 586 DcmElement* tmp = dataset.remove(*it); | |
| 587 if (tmp != NULL) | |
| 588 { | |
| 589 delete tmp; | |
| 590 } | |
| 591 } | |
| 592 } | |
| 593 | |
| 594 | |
|
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595 static void InsertInternal(DcmDataset& dicom, |
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596 DcmElement* element) |
| 790 | 597 { |
|
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598 OFCondition cond = dicom.insert(element, false, false); |
|
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599 if (!cond.good()) |
| 790 | 600 { |
| 601 // This field already exists | |
|
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602 delete element; |
| 790 | 603 throw OrthancException(ErrorCode_InternalError); |
| 604 } | |
| 605 } | |
| 606 | |
| 607 | |
|
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608 void ParsedDicomFile::Insert(const DicomTag& tag, |
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609 const Json::Value& value, |
|
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610 bool decodeDataUriScheme) |
| 790 | 611 { |
|
1980
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612 if (pimpl_->file_->getDataset()->tagExists(ToDcmtkBridge::Convert(tag))) |
|
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613 { |
|
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614 throw OrthancException(ErrorCode_AlreadyExistingTag); |
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615 } |
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616 |
|
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617 if (decodeDataUriScheme && |
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618 value.type() == Json::stringValue && |
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619 (tag == DICOM_TAG_ENCAPSULATED_DOCUMENT || |
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620 tag == DICOM_TAG_PIXEL_DATA)) |
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621 { |
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622 if (EmbedContentInternal(value.asString())) |
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623 { |
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624 return; |
|
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625 } |
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626 } |
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627 |
|
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628 InvalidateCache(); |
|
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629 std::auto_ptr<DcmElement> element(FromDcmtkBridge::FromJson(tag, value, decodeDataUriScheme, GetEncoding())); |
|
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630 InsertInternal(*pimpl_->file_->getDataset(), element.release()); |
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631 } |
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632 |
| 790 | 633 |
|
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634 static bool CanReplaceProceed(DcmDataset& dicom, |
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635 const DcmTagKey& tag, |
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636 DicomReplaceMode mode) |
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637 { |
| 1979 | 638 if (dicom.findAndDeleteElement(tag).good()) |
| 790 | 639 { |
| 1979 | 640 // This tag was existing, it has been deleted |
| 641 return true; | |
| 642 } | |
| 643 else | |
| 644 { | |
| 645 // This tag was absent, act wrt. the specified "mode" | |
| 790 | 646 switch (mode) |
| 647 { | |
| 648 case DicomReplaceMode_InsertIfAbsent: | |
| 1979 | 649 return true; |
| 790 | 650 |
| 651 case DicomReplaceMode_ThrowIfAbsent: | |
| 652 throw OrthancException(ErrorCode_InexistentItem); | |
| 653 | |
| 654 case DicomReplaceMode_IgnoreIfAbsent: | |
| 1979 | 655 return false; |
| 656 | |
| 657 default: | |
| 658 throw OrthancException(ErrorCode_ParameterOutOfRange); | |
| 790 | 659 } |
| 660 } | |
|
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661 } |
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662 |
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663 |
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664 void ParsedDicomFile::UpdateStorageUid(const DicomTag& tag, |
| 1695 | 665 const std::string& utf8Value, |
|
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666 bool decodeDataUriScheme) |
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667 { |
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668 if (tag != DICOM_TAG_SOP_CLASS_UID && |
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669 tag != DICOM_TAG_SOP_INSTANCE_UID) |
| 790 | 670 { |
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671 return; |
| 790 | 672 } |
| 673 | |
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674 std::string binary; |
| 1695 | 675 const std::string* decoded = &utf8Value; |
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676 |
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677 if (decodeDataUriScheme && |
| 1695 | 678 boost::starts_with(utf8Value, "data:application/octet-stream;base64,")) |
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679 { |
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680 std::string mime; |
|
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return code in Toolbox::DecodeDataUriScheme
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681 if (!Toolbox::DecodeDataUriScheme(mime, binary, utf8Value)) |
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682 { |
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return code in Toolbox::DecodeDataUriScheme
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683 throw OrthancException(ErrorCode_BadFileFormat); |
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684 } |
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685 |
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686 decoded = &binary; |
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687 } |
| 1695 | 688 else |
| 689 { | |
| 690 Encoding encoding = GetEncoding(); | |
| 691 if (GetEncoding() != Encoding_Utf8) | |
| 692 { | |
| 693 binary = Toolbox::ConvertFromUtf8(utf8Value, encoding); | |
| 694 decoded = &binary; | |
| 695 } | |
| 696 } | |
| 790 | 697 |
| 698 /** | |
| 699 * dcmodify will automatically correct 'Media Storage SOP Class | |
| 700 * UID' and 'Media Storage SOP Instance UID' in the metaheader, if | |
| 701 * you make changes to the related tags in the dataset ('SOP Class | |
| 702 * UID' and 'SOP Instance UID') via insert or modify mode | |
| 703 * options. You can disable this behaviour by using the -nmu | |
| 704 * option. | |
| 705 **/ | |
| 706 | |
| 707 if (tag == DICOM_TAG_SOP_CLASS_UID) | |
| 708 { | |
|
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|
709 ReplacePlainString(DICOM_TAG_MEDIA_STORAGE_SOP_CLASS_UID, *decoded); |
| 790 | 710 } |
| 711 | |
| 712 if (tag == DICOM_TAG_SOP_INSTANCE_UID) | |
| 713 { | |
|
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714 ReplacePlainString(DICOM_TAG_MEDIA_STORAGE_SOP_INSTANCE_UID, *decoded); |
|
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715 } |
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|
716 } |
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|
717 |
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|
718 |
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|
719 void ParsedDicomFile::Replace(const DicomTag& tag, |
| 1695 | 720 const std::string& utf8Value, |
|
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721 bool decodeDataUriScheme, |
|
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722 DicomReplaceMode mode) |
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723 { |
|
1924
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New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
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724 InvalidateCache(); |
|
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|
725 |
|
1982
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1981
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|
726 DcmDataset& dicom = *pimpl_->file_->getDataset(); |
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727 if (CanReplaceProceed(dicom, ToDcmtkBridge::Convert(tag), mode)) |
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1981
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|
728 { |
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1981
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|
729 // Either the tag was previously existing (and now removed), or |
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|
730 // the replace mode was set to "InsertIfAbsent" |
| 1979 | 731 |
|
1982
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|
732 if (decodeDataUriScheme && |
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733 (tag == DICOM_TAG_ENCAPSULATED_DOCUMENT || |
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734 tag == DICOM_TAG_PIXEL_DATA)) |
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735 { |
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|
736 if (EmbedContentInternal(utf8Value)) |
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737 { |
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|
738 return; |
|
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|
739 } |
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|
740 } |
|
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1981
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|
741 |
|
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1981
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changeset
|
742 std::auto_ptr<DcmElement> element(FromDcmtkBridge::CreateElementForTag(tag)); |
|
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parents:
1981
diff
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|
743 FromDcmtkBridge::FillElementWithString(*element, tag, utf8Value, decodeDataUriScheme, GetEncoding()); |
|
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parents:
1981
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|
744 |
| 1979 | 745 InsertInternal(dicom, element.release()); |
| 746 UpdateStorageUid(tag, utf8Value, false); | |
| 747 } | |
|
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748 } |
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|
749 |
|
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|
750 |
|
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|
751 void ParsedDicomFile::Replace(const DicomTag& tag, |
|
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752 const Json::Value& value, |
|
1818
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753 bool decodeDataUriScheme, |
|
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|
754 DicomReplaceMode mode) |
|
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|
755 { |
|
1924
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New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
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|
756 InvalidateCache(); |
|
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New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
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changeset
|
757 |
|
1982
b5d4f9c156ad
Modification of instances can now replace PixelData
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1981
diff
changeset
|
758 DcmDataset& dicom = *pimpl_->file_->getDataset(); |
|
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Modification of instances can now replace PixelData
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1981
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|
759 if (CanReplaceProceed(dicom, ToDcmtkBridge::Convert(tag), mode)) |
|
b5d4f9c156ad
Modification of instances can now replace PixelData
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parents:
1981
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|
760 { |
|
b5d4f9c156ad
Modification of instances can now replace PixelData
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parents:
1981
diff
changeset
|
761 // Either the tag was previously existing (and now removed), or |
|
b5d4f9c156ad
Modification of instances can now replace PixelData
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parents:
1981
diff
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|
762 // the replace mode was set to "InsertIfAbsent" |
|
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|
763 |
|
1982
b5d4f9c156ad
Modification of instances can now replace PixelData
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parents:
1981
diff
changeset
|
764 if (decodeDataUriScheme && |
|
b5d4f9c156ad
Modification of instances can now replace PixelData
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1981
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|
765 value.type() == Json::stringValue && |
|
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Modification of instances can now replace PixelData
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1981
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|
766 (tag == DICOM_TAG_ENCAPSULATED_DOCUMENT || |
|
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Modification of instances can now replace PixelData
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1981
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|
767 tag == DICOM_TAG_PIXEL_DATA)) |
|
b5d4f9c156ad
Modification of instances can now replace PixelData
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parents:
1981
diff
changeset
|
768 { |
|
b5d4f9c156ad
Modification of instances can now replace PixelData
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parents:
1981
diff
changeset
|
769 if (EmbedContentInternal(value.asString())) |
|
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Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
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1981
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changeset
|
770 { |
|
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Modification of instances can now replace PixelData
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1981
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changeset
|
771 return; |
|
b5d4f9c156ad
Modification of instances can now replace PixelData
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1981
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changeset
|
772 } |
|
b5d4f9c156ad
Modification of instances can now replace PixelData
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parents:
1981
diff
changeset
|
773 } |
|
b5d4f9c156ad
Modification of instances can now replace PixelData
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parents:
1981
diff
changeset
|
774 |
|
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Modification of instances can now replace PixelData
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parents:
1981
diff
changeset
|
775 InsertInternal(dicom, FromDcmtkBridge::FromJson(tag, value, decodeDataUriScheme, GetEncoding())); |
| 1979 | 776 |
| 777 if (tag == DICOM_TAG_SOP_CLASS_UID || | |
| 778 tag == DICOM_TAG_SOP_INSTANCE_UID) | |
|
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|
779 { |
| 1979 | 780 if (value.type() != Json::stringValue) |
| 781 { | |
| 782 throw OrthancException(ErrorCode_BadParameterType); | |
| 783 } | |
| 784 | |
| 785 UpdateStorageUid(tag, value.asString(), decodeDataUriScheme); | |
|
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|
786 } |
| 790 | 787 } |
| 788 } | |
| 789 | |
| 790 | |
|
2394
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fix compilation without Web server
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2382
diff
changeset
|
791 #if ORTHANC_ENABLE_CIVETWEB == 1 || ORTHANC_ENABLE_MONGOOSE == 1 |
| 790 | 792 void ParsedDicomFile::Answer(RestApiOutput& output) |
| 793 { | |
| 794 std::string serialized; | |
|
1004
a226e0959d8b
DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
991
diff
changeset
|
795 if (FromDcmtkBridge::SaveToMemoryBuffer(serialized, *pimpl_->file_->getDataset())) |
| 790 | 796 { |
| 797 output.AnswerBuffer(serialized, CONTENT_TYPE_OCTET_STREAM); | |
| 798 } | |
| 799 } | |
|
2394
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fix compilation without Web server
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diff
changeset
|
800 #endif |
| 790 | 801 |
| 802 | |
| 803 bool ParsedDicomFile::GetTagValue(std::string& value, | |
| 804 const DicomTag& tag) | |
| 805 { | |
| 806 DcmTagKey k(tag.GetGroup(), tag.GetElement()); | |
| 794 | 807 DcmDataset& dataset = *pimpl_->file_->getDataset(); |
|
1307
f796207e3df1
Fix replacement and insertion of private DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1288
diff
changeset
|
808 |
|
1818
1065401501fb
ParsedDicomFile::CreateFromJson
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parents:
1805
diff
changeset
|
809 if (tag.IsPrivate() || |
|
1655
e40fd0d925c5
/tools/create-dicom can create tags with unknown VR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1641
diff
changeset
|
810 FromDcmtkBridge::IsUnknownTag(tag) || |
|
1556
b8dc2f855a83
Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1555
diff
changeset
|
811 tag == DICOM_TAG_PIXEL_DATA || |
|
b8dc2f855a83
Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1555
diff
changeset
|
812 tag == DICOM_TAG_ENCAPSULATED_DOCUMENT) |
| 790 | 813 { |
|
1307
f796207e3df1
Fix replacement and insertion of private DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1288
diff
changeset
|
814 const Uint8* data = NULL; // This is freed in the destructor of the dataset |
|
f796207e3df1
Fix replacement and insertion of private DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1288
diff
changeset
|
815 long unsigned int count = 0; |
| 790 | 816 |
|
1307
f796207e3df1
Fix replacement and insertion of private DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1288
diff
changeset
|
817 if (dataset.findAndGetUint8Array(k, data, &count).good()) |
|
f796207e3df1
Fix replacement and insertion of private DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1288
diff
changeset
|
818 { |
|
f796207e3df1
Fix replacement and insertion of private DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1288
diff
changeset
|
819 if (count > 0) |
|
f796207e3df1
Fix replacement and insertion of private DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1288
diff
changeset
|
820 { |
|
f796207e3df1
Fix replacement and insertion of private DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1288
diff
changeset
|
821 assert(data != NULL); |
|
f796207e3df1
Fix replacement and insertion of private DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1288
diff
changeset
|
822 value.assign(reinterpret_cast<const char*>(data), count); |
|
f796207e3df1
Fix replacement and insertion of private DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1288
diff
changeset
|
823 } |
|
f796207e3df1
Fix replacement and insertion of private DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1288
diff
changeset
|
824 else |
|
f796207e3df1
Fix replacement and insertion of private DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1288
diff
changeset
|
825 { |
|
f796207e3df1
Fix replacement and insertion of private DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1288
diff
changeset
|
826 value.clear(); |
|
f796207e3df1
Fix replacement and insertion of private DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1288
diff
changeset
|
827 } |
| 790 | 828 |
|
1307
f796207e3df1
Fix replacement and insertion of private DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1288
diff
changeset
|
829 return true; |
|
f796207e3df1
Fix replacement and insertion of private DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1288
diff
changeset
|
830 } |
|
f796207e3df1
Fix replacement and insertion of private DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1288
diff
changeset
|
831 else |
|
f796207e3df1
Fix replacement and insertion of private DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1288
diff
changeset
|
832 { |
|
f796207e3df1
Fix replacement and insertion of private DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1288
diff
changeset
|
833 return false; |
|
f796207e3df1
Fix replacement and insertion of private DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1288
diff
changeset
|
834 } |
| 790 | 835 } |
| 836 else | |
| 837 { | |
|
1307
f796207e3df1
Fix replacement and insertion of private DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1288
diff
changeset
|
838 DcmElement* element = NULL; |
|
f796207e3df1
Fix replacement and insertion of private DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1288
diff
changeset
|
839 if (!dataset.findAndGetElement(k, element).good() || |
|
f796207e3df1
Fix replacement and insertion of private DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1288
diff
changeset
|
840 element == NULL) |
|
f796207e3df1
Fix replacement and insertion of private DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1288
diff
changeset
|
841 { |
|
f796207e3df1
Fix replacement and insertion of private DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1288
diff
changeset
|
842 return false; |
|
f796207e3df1
Fix replacement and insertion of private DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1288
diff
changeset
|
843 } |
|
f796207e3df1
Fix replacement and insertion of private DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1288
diff
changeset
|
844 |
|
2409
e4045b3c9772
ignore-length argument if retrieving DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2394
diff
changeset
|
845 std::set<DicomTag> tmp; |
|
1736
b953c6eef28d
ToJson: IncludePrivateTags and IncludeUnknownTags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1735
diff
changeset
|
846 std::auto_ptr<DicomValue> v(FromDcmtkBridge::ConvertLeafElement |
|
1929
cda5b0ab4ce5
ORTHANC_MAXIMUM_TAG_LENGTH made explicit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1928
diff
changeset
|
847 (*element, DicomToJsonFlags_Default, |
|
2409
e4045b3c9772
ignore-length argument if retrieving DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2394
diff
changeset
|
848 0, GetEncoding(), tmp)); |
|
1556
b8dc2f855a83
Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1555
diff
changeset
|
849 |
|
1737
ec66a16aa398
removal of DicomStringValue and DicomNullValue
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1736
diff
changeset
|
850 if (v.get() == NULL || |
|
ec66a16aa398
removal of DicomStringValue and DicomNullValue
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1736
diff
changeset
|
851 v->IsNull()) |
|
1307
f796207e3df1
Fix replacement and insertion of private DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1288
diff
changeset
|
852 { |
|
f796207e3df1
Fix replacement and insertion of private DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1288
diff
changeset
|
853 value = ""; |
|
f796207e3df1
Fix replacement and insertion of private DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1288
diff
changeset
|
854 } |
|
f796207e3df1
Fix replacement and insertion of private DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1288
diff
changeset
|
855 else |
|
f796207e3df1
Fix replacement and insertion of private DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1288
diff
changeset
|
856 { |
|
1737
ec66a16aa398
removal of DicomStringValue and DicomNullValue
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1736
diff
changeset
|
857 // TODO v->IsBinary() |
|
ec66a16aa398
removal of DicomStringValue and DicomNullValue
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1736
diff
changeset
|
858 value = v->GetContent(); |
|
1307
f796207e3df1
Fix replacement and insertion of private DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1288
diff
changeset
|
859 } |
|
1556
b8dc2f855a83
Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1555
diff
changeset
|
860 |
|
1307
f796207e3df1
Fix replacement and insertion of private DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1288
diff
changeset
|
861 return true; |
| 790 | 862 } |
| 863 } | |
| 864 | |
| 865 | |
| 866 DicomInstanceHasher ParsedDicomFile::GetHasher() | |
| 867 { | |
| 868 std::string patientId, studyUid, seriesUid, instanceUid; | |
| 869 | |
| 870 if (!GetTagValue(patientId, DICOM_TAG_PATIENT_ID) || | |
| 871 !GetTagValue(studyUid, DICOM_TAG_STUDY_INSTANCE_UID) || | |
| 872 !GetTagValue(seriesUid, DICOM_TAG_SERIES_INSTANCE_UID) || | |
| 873 !GetTagValue(instanceUid, DICOM_TAG_SOP_INSTANCE_UID)) | |
| 874 { | |
| 875 throw OrthancException(ErrorCode_BadFileFormat); | |
| 876 } | |
| 877 | |
| 878 return DicomInstanceHasher(patientId, studyUid, seriesUid, instanceUid); | |
| 879 } | |
| 880 | |
| 881 | |
| 882 void ParsedDicomFile::SaveToMemoryBuffer(std::string& buffer) | |
| 883 { | |
|
1004
a226e0959d8b
DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
991
diff
changeset
|
884 FromDcmtkBridge::SaveToMemoryBuffer(buffer, *pimpl_->file_->getDataset()); |
| 790 | 885 } |
| 886 | |
| 887 | |
| 888 void ParsedDicomFile::SaveToFile(const std::string& path) | |
| 889 { | |
| 890 // TODO Avoid using a temporary memory buffer, write directly on disk | |
| 891 std::string content; | |
| 892 SaveToMemoryBuffer(content); | |
| 2140 | 893 SystemToolbox::WriteFile(content, path); |
| 790 | 894 } |
| 895 | |
| 896 | |
|
1805
f08978b1f45b
c-find scu for modality worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1800
diff
changeset
|
897 ParsedDicomFile::ParsedDicomFile(bool createIdentifiers) : pimpl_(new PImpl) |
| 790 | 898 { |
| 794 | 899 pimpl_->file_.reset(new DcmFileFormat); |
|
1805
f08978b1f45b
c-find scu for modality worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1800
diff
changeset
|
900 |
|
f08978b1f45b
c-find scu for modality worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1800
diff
changeset
|
901 if (createIdentifiers) |
|
f08978b1f45b
c-find scu for modality worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1800
diff
changeset
|
902 { |
|
1982
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
903 ReplacePlainString(DICOM_TAG_PATIENT_ID, FromDcmtkBridge::GenerateUniqueIdentifier(ResourceType_Patient)); |
|
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
904 ReplacePlainString(DICOM_TAG_STUDY_INSTANCE_UID, FromDcmtkBridge::GenerateUniqueIdentifier(ResourceType_Study)); |
|
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
905 ReplacePlainString(DICOM_TAG_SERIES_INSTANCE_UID, FromDcmtkBridge::GenerateUniqueIdentifier(ResourceType_Series)); |
|
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
906 ReplacePlainString(DICOM_TAG_SOP_INSTANCE_UID, FromDcmtkBridge::GenerateUniqueIdentifier(ResourceType_Instance)); |
|
1805
f08978b1f45b
c-find scu for modality worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1800
diff
changeset
|
907 } |
| 790 | 908 } |
| 909 | |
| 791 | 910 |
|
2202
9b373b7d6713
Fix handling of encodings in C-FIND requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2142
diff
changeset
|
911 void ParsedDicomFile::CreateFromDicomMap(const DicomMap& source, |
|
9b373b7d6713
Fix handling of encodings in C-FIND requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2142
diff
changeset
|
912 Encoding defaultEncoding) |
|
1786
164d78911382
primitives to handle dicom worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1781
diff
changeset
|
913 { |
|
2445
6e5bc5c6d1a4
Fix to allow creating DICOM instances with empty Specific Character Set (0008,0005)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2409
diff
changeset
|
914 try |
|
2202
9b373b7d6713
Fix handling of encodings in C-FIND requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2142
diff
changeset
|
915 { |
|
2445
6e5bc5c6d1a4
Fix to allow creating DICOM instances with empty Specific Character Set (0008,0005)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2409
diff
changeset
|
916 pimpl_->file_.reset(new DcmFileFormat); |
|
6e5bc5c6d1a4
Fix to allow creating DICOM instances with empty Specific Character Set (0008,0005)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2409
diff
changeset
|
917 |
|
6e5bc5c6d1a4
Fix to allow creating DICOM instances with empty Specific Character Set (0008,0005)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2409
diff
changeset
|
918 const DicomValue* tmp = source.TestAndGetValue(DICOM_TAG_SPECIFIC_CHARACTER_SET); |
|
6e5bc5c6d1a4
Fix to allow creating DICOM instances with empty Specific Character Set (0008,0005)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2409
diff
changeset
|
919 |
|
6e5bc5c6d1a4
Fix to allow creating DICOM instances with empty Specific Character Set (0008,0005)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2409
diff
changeset
|
920 if (tmp == NULL) |
|
2202
9b373b7d6713
Fix handling of encodings in C-FIND requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2142
diff
changeset
|
921 { |
|
2445
6e5bc5c6d1a4
Fix to allow creating DICOM instances with empty Specific Character Set (0008,0005)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2409
diff
changeset
|
922 SetEncoding(defaultEncoding); |
|
6e5bc5c6d1a4
Fix to allow creating DICOM instances with empty Specific Character Set (0008,0005)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2409
diff
changeset
|
923 } |
|
6e5bc5c6d1a4
Fix to allow creating DICOM instances with empty Specific Character Set (0008,0005)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2409
diff
changeset
|
924 else if (tmp->IsBinary()) |
|
6e5bc5c6d1a4
Fix to allow creating DICOM instances with empty Specific Character Set (0008,0005)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2409
diff
changeset
|
925 { |
|
6e5bc5c6d1a4
Fix to allow creating DICOM instances with empty Specific Character Set (0008,0005)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2409
diff
changeset
|
926 LOG(ERROR) << "Invalid binary string in the SpecificCharacterSet (0008,0005) tag"; |
|
2202
9b373b7d6713
Fix handling of encodings in C-FIND requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2142
diff
changeset
|
927 throw OrthancException(ErrorCode_ParameterOutOfRange); |
|
9b373b7d6713
Fix handling of encodings in C-FIND requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2142
diff
changeset
|
928 } |
|
2445
6e5bc5c6d1a4
Fix to allow creating DICOM instances with empty Specific Character Set (0008,0005)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2409
diff
changeset
|
929 else if (tmp->IsNull() || |
|
6e5bc5c6d1a4
Fix to allow creating DICOM instances with empty Specific Character Set (0008,0005)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2409
diff
changeset
|
930 tmp->GetContent().empty()) |
|
6e5bc5c6d1a4
Fix to allow creating DICOM instances with empty Specific Character Set (0008,0005)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2409
diff
changeset
|
931 { |
|
6e5bc5c6d1a4
Fix to allow creating DICOM instances with empty Specific Character Set (0008,0005)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2409
diff
changeset
|
932 SetEncoding(defaultEncoding); |
|
6e5bc5c6d1a4
Fix to allow creating DICOM instances with empty Specific Character Set (0008,0005)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2409
diff
changeset
|
933 } |
|
2202
9b373b7d6713
Fix handling of encodings in C-FIND requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2142
diff
changeset
|
934 else |
|
9b373b7d6713
Fix handling of encodings in C-FIND requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2142
diff
changeset
|
935 { |
|
2445
6e5bc5c6d1a4
Fix to allow creating DICOM instances with empty Specific Character Set (0008,0005)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2409
diff
changeset
|
936 Encoding encoding; |
|
6e5bc5c6d1a4
Fix to allow creating DICOM instances with empty Specific Character Set (0008,0005)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2409
diff
changeset
|
937 |
|
6e5bc5c6d1a4
Fix to allow creating DICOM instances with empty Specific Character Set (0008,0005)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2409
diff
changeset
|
938 if (GetDicomEncoding(encoding, tmp->GetContent().c_str())) |
|
6e5bc5c6d1a4
Fix to allow creating DICOM instances with empty Specific Character Set (0008,0005)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2409
diff
changeset
|
939 { |
|
6e5bc5c6d1a4
Fix to allow creating DICOM instances with empty Specific Character Set (0008,0005)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2409
diff
changeset
|
940 SetEncoding(encoding); |
|
6e5bc5c6d1a4
Fix to allow creating DICOM instances with empty Specific Character Set (0008,0005)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2409
diff
changeset
|
941 } |
|
6e5bc5c6d1a4
Fix to allow creating DICOM instances with empty Specific Character Set (0008,0005)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2409
diff
changeset
|
942 else |
|
6e5bc5c6d1a4
Fix to allow creating DICOM instances with empty Specific Character Set (0008,0005)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2409
diff
changeset
|
943 { |
|
6e5bc5c6d1a4
Fix to allow creating DICOM instances with empty Specific Character Set (0008,0005)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2409
diff
changeset
|
944 LOG(ERROR) << "Unsupported value for the SpecificCharacterSet (0008,0005) tag: \"" |
|
6e5bc5c6d1a4
Fix to allow creating DICOM instances with empty Specific Character Set (0008,0005)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2409
diff
changeset
|
945 << tmp->GetContent() << "\""; |
|
6e5bc5c6d1a4
Fix to allow creating DICOM instances with empty Specific Character Set (0008,0005)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2409
diff
changeset
|
946 throw OrthancException(ErrorCode_ParameterOutOfRange); |
|
6e5bc5c6d1a4
Fix to allow creating DICOM instances with empty Specific Character Set (0008,0005)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2409
diff
changeset
|
947 } |
|
6e5bc5c6d1a4
Fix to allow creating DICOM instances with empty Specific Character Set (0008,0005)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2409
diff
changeset
|
948 } |
|
6e5bc5c6d1a4
Fix to allow creating DICOM instances with empty Specific Character Set (0008,0005)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2409
diff
changeset
|
949 |
|
6e5bc5c6d1a4
Fix to allow creating DICOM instances with empty Specific Character Set (0008,0005)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2409
diff
changeset
|
950 for (DicomMap::Map::const_iterator |
|
6e5bc5c6d1a4
Fix to allow creating DICOM instances with empty Specific Character Set (0008,0005)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2409
diff
changeset
|
951 it = source.map_.begin(); it != source.map_.end(); ++it) |
|
6e5bc5c6d1a4
Fix to allow creating DICOM instances with empty Specific Character Set (0008,0005)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2409
diff
changeset
|
952 { |
|
6e5bc5c6d1a4
Fix to allow creating DICOM instances with empty Specific Character Set (0008,0005)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2409
diff
changeset
|
953 if (it->first != DICOM_TAG_SPECIFIC_CHARACTER_SET && |
|
6e5bc5c6d1a4
Fix to allow creating DICOM instances with empty Specific Character Set (0008,0005)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2409
diff
changeset
|
954 !it->second->IsNull()) |
|
6e5bc5c6d1a4
Fix to allow creating DICOM instances with empty Specific Character Set (0008,0005)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2409
diff
changeset
|
955 { |
|
6e5bc5c6d1a4
Fix to allow creating DICOM instances with empty Specific Character Set (0008,0005)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2409
diff
changeset
|
956 ReplacePlainString(it->first, it->second->GetContent()); |
|
6e5bc5c6d1a4
Fix to allow creating DICOM instances with empty Specific Character Set (0008,0005)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2409
diff
changeset
|
957 } |
|
2202
9b373b7d6713
Fix handling of encodings in C-FIND requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2142
diff
changeset
|
958 } |
|
9b373b7d6713
Fix handling of encodings in C-FIND requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2142
diff
changeset
|
959 } |
|
2445
6e5bc5c6d1a4
Fix to allow creating DICOM instances with empty Specific Character Set (0008,0005)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2409
diff
changeset
|
960 catch (OrthancException&) |
|
2202
9b373b7d6713
Fix handling of encodings in C-FIND requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2142
diff
changeset
|
961 { |
|
2445
6e5bc5c6d1a4
Fix to allow creating DICOM instances with empty Specific Character Set (0008,0005)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2409
diff
changeset
|
962 // Manually delete the PImpl to avoid a memory leak due to |
|
6e5bc5c6d1a4
Fix to allow creating DICOM instances with empty Specific Character Set (0008,0005)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2409
diff
changeset
|
963 // throwing the exception in the constructor |
|
6e5bc5c6d1a4
Fix to allow creating DICOM instances with empty Specific Character Set (0008,0005)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2409
diff
changeset
|
964 delete pimpl_; |
|
6e5bc5c6d1a4
Fix to allow creating DICOM instances with empty Specific Character Set (0008,0005)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2409
diff
changeset
|
965 pimpl_ = NULL; |
|
6e5bc5c6d1a4
Fix to allow creating DICOM instances with empty Specific Character Set (0008,0005)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2409
diff
changeset
|
966 throw; |
|
2202
9b373b7d6713
Fix handling of encodings in C-FIND requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2142
diff
changeset
|
967 } |
|
9b373b7d6713
Fix handling of encodings in C-FIND requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2142
diff
changeset
|
968 } |
|
9b373b7d6713
Fix handling of encodings in C-FIND requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2142
diff
changeset
|
969 |
|
1787
1b1d5470233f
refactoring of DicomFindAnswers
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1786
diff
changeset
|
970 |
|
2202
9b373b7d6713
Fix handling of encodings in C-FIND requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2142
diff
changeset
|
971 ParsedDicomFile::ParsedDicomFile(const DicomMap& map, |
|
9b373b7d6713
Fix handling of encodings in C-FIND requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2142
diff
changeset
|
972 Encoding defaultEncoding) : |
|
9b373b7d6713
Fix handling of encodings in C-FIND requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2142
diff
changeset
|
973 pimpl_(new PImpl) |
|
9b373b7d6713
Fix handling of encodings in C-FIND requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2142
diff
changeset
|
974 { |
|
9b373b7d6713
Fix handling of encodings in C-FIND requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2142
diff
changeset
|
975 CreateFromDicomMap(map, defaultEncoding); |
|
9b373b7d6713
Fix handling of encodings in C-FIND requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2142
diff
changeset
|
976 } |
|
9b373b7d6713
Fix handling of encodings in C-FIND requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2142
diff
changeset
|
977 |
|
9b373b7d6713
Fix handling of encodings in C-FIND requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2142
diff
changeset
|
978 |
|
9b373b7d6713
Fix handling of encodings in C-FIND requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2142
diff
changeset
|
979 ParsedDicomFile::ParsedDicomFile(const DicomMap& map) : |
|
9b373b7d6713
Fix handling of encodings in C-FIND requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2142
diff
changeset
|
980 pimpl_(new PImpl) |
|
9b373b7d6713
Fix handling of encodings in C-FIND requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2142
diff
changeset
|
981 { |
|
2381
b8969010b534
uncoupling DCMTK primitives from Orthanc::Configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2380
diff
changeset
|
982 CreateFromDicomMap(map, GetDefaultDicomEncoding()); |
|
1786
164d78911382
primitives to handle dicom worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1781
diff
changeset
|
983 } |
|
164d78911382
primitives to handle dicom worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1781
diff
changeset
|
984 |
|
164d78911382
primitives to handle dicom worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1781
diff
changeset
|
985 |
|
1800
30e97a1f4093
callback for handling worklists with plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1788
diff
changeset
|
986 ParsedDicomFile::ParsedDicomFile(const void* content, |
|
30e97a1f4093
callback for handling worklists with plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1788
diff
changeset
|
987 size_t size) : pimpl_(new PImpl) |
| 791 | 988 { |
|
1935
e251606c1433
FromDcmtkBridge::LoadFromMemoryBuffer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1934
diff
changeset
|
989 pimpl_->file_.reset(FromDcmtkBridge::LoadFromMemoryBuffer(content, size)); |
| 791 | 990 } |
| 991 | |
| 794 | 992 ParsedDicomFile::ParsedDicomFile(const std::string& content) : pimpl_(new PImpl) |
| 791 | 993 { |
| 994 if (content.size() == 0) | |
| 995 { | |
|
1935
e251606c1433
FromDcmtkBridge::LoadFromMemoryBuffer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1934
diff
changeset
|
996 pimpl_->file_.reset(FromDcmtkBridge::LoadFromMemoryBuffer(NULL, 0)); |
| 791 | 997 } |
| 998 else | |
| 999 { | |
|
1935
e251606c1433
FromDcmtkBridge::LoadFromMemoryBuffer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1934
diff
changeset
|
1000 pimpl_->file_.reset(FromDcmtkBridge::LoadFromMemoryBuffer(&content[0], content.size())); |
| 791 | 1001 } |
| 1002 } | |
| 792 | 1003 |
| 1004 | |
| 794 | 1005 ParsedDicomFile::ParsedDicomFile(ParsedDicomFile& other) : |
| 1006 pimpl_(new PImpl) | |
| 792 | 1007 { |
| 794 | 1008 pimpl_->file_.reset(dynamic_cast<DcmFileFormat*>(other.pimpl_->file_->clone())); |
|
956
2fd5a163776d
primitives for proper encoding handling
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
874
diff
changeset
|
1009 |
|
1564
1b7def486e62
creation of DICOM series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1562
diff
changeset
|
1010 // Create a new instance-level identifier |
|
1982
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
1011 ReplacePlainString(DICOM_TAG_SOP_INSTANCE_UID, FromDcmtkBridge::GenerateUniqueIdentifier(ResourceType_Instance)); |
| 792 | 1012 } |
| 1013 | |
| 1014 | |
|
1788
6a2d507ef064
getting rid of opaque data structures
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1787
diff
changeset
|
1015 ParsedDicomFile::ParsedDicomFile(DcmDataset& dicom) : pimpl_(new PImpl) |
|
6a2d507ef064
getting rid of opaque data structures
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1787
diff
changeset
|
1016 { |
|
6a2d507ef064
getting rid of opaque data structures
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1787
diff
changeset
|
1017 pimpl_->file_.reset(new DcmFileFormat(&dicom)); |
|
6a2d507ef064
getting rid of opaque data structures
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1787
diff
changeset
|
1018 } |
|
6a2d507ef064
getting rid of opaque data structures
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1787
diff
changeset
|
1019 |
|
6a2d507ef064
getting rid of opaque data structures
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1787
diff
changeset
|
1020 |
|
6a2d507ef064
getting rid of opaque data structures
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1787
diff
changeset
|
1021 ParsedDicomFile::ParsedDicomFile(DcmFileFormat& dicom) : pimpl_(new PImpl) |
|
6a2d507ef064
getting rid of opaque data structures
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1787
diff
changeset
|
1022 { |
|
6a2d507ef064
getting rid of opaque data structures
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1787
diff
changeset
|
1023 pimpl_->file_.reset(new DcmFileFormat(dicom)); |
|
6a2d507ef064
getting rid of opaque data structures
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1787
diff
changeset
|
1024 } |
|
6a2d507ef064
getting rid of opaque data structures
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1787
diff
changeset
|
1025 |
|
6a2d507ef064
getting rid of opaque data structures
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1787
diff
changeset
|
1026 |
| 792 | 1027 ParsedDicomFile::~ParsedDicomFile() |
| 1028 { | |
| 794 | 1029 delete pimpl_; |
| 792 | 1030 } |
| 1031 | |
| 793 | 1032 |
|
1824
b530c3dfe2a6
refactoring image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1818
diff
changeset
|
1033 DcmFileFormat& ParsedDicomFile::GetDcmtkObject() const |
| 793 | 1034 { |
|
1788
6a2d507ef064
getting rid of opaque data structures
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1787
diff
changeset
|
1035 return *pimpl_->file_.get(); |
| 793 | 1036 } |
| 1037 | |
| 1038 | |
| 1039 ParsedDicomFile* ParsedDicomFile::Clone() | |
| 1040 { | |
| 794 | 1041 return new ParsedDicomFile(*this); |
| 793 | 1042 } |
|
800
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1043 |
|
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1044 |
|
1982
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
1045 bool ParsedDicomFile::EmbedContentInternal(const std::string& dataUriScheme) |
|
800
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1046 { |
|
1641
4e56b5a206b7
Support of binary tags encoded using data URI scheme
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1616
diff
changeset
|
1047 std::string mime, content; |
|
1981
4b545a8b1f95
return code in Toolbox::DecodeDataUriScheme
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1980
diff
changeset
|
1048 if (!Toolbox::DecodeDataUriScheme(mime, content, dataUriScheme)) |
|
4b545a8b1f95
return code in Toolbox::DecodeDataUriScheme
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1980
diff
changeset
|
1049 { |
|
1982
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
1050 return false; |
|
1981
4b545a8b1f95
return code in Toolbox::DecodeDataUriScheme
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1980
diff
changeset
|
1051 } |
|
4b545a8b1f95
return code in Toolbox::DecodeDataUriScheme
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1980
diff
changeset
|
1052 |
| 1562 | 1053 Toolbox::ToLowerCase(mime); |
|
1555
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1523
diff
changeset
|
1054 |
|
2380
96b3ec054b69
reorganization in macros
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2310
diff
changeset
|
1055 if (mime == "image/png") |
| 1562 | 1056 { |
|
2380
96b3ec054b69
reorganization in macros
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2310
diff
changeset
|
1057 #if ORTHANC_ENABLE_PNG == 1 |
| 1562 | 1058 EmbedImage(mime, content); |
|
2380
96b3ec054b69
reorganization in macros
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2310
diff
changeset
|
1059 #else |
|
96b3ec054b69
reorganization in macros
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2310
diff
changeset
|
1060 LOG(ERROR) << "Orthanc was compiled without support of PNG"; |
|
96b3ec054b69
reorganization in macros
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2310
diff
changeset
|
1061 throw OrthancException(ErrorCode_NotImplemented); |
|
96b3ec054b69
reorganization in macros
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2310
diff
changeset
|
1062 #endif |
|
96b3ec054b69
reorganization in macros
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2310
diff
changeset
|
1063 } |
|
96b3ec054b69
reorganization in macros
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2310
diff
changeset
|
1064 else if (mime == "image/jpeg") |
|
96b3ec054b69
reorganization in macros
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2310
diff
changeset
|
1065 { |
|
96b3ec054b69
reorganization in macros
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2310
diff
changeset
|
1066 #if ORTHANC_ENABLE_JPEG == 1 |
|
96b3ec054b69
reorganization in macros
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2310
diff
changeset
|
1067 EmbedImage(mime, content); |
|
96b3ec054b69
reorganization in macros
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2310
diff
changeset
|
1068 #else |
|
96b3ec054b69
reorganization in macros
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2310
diff
changeset
|
1069 LOG(ERROR) << "Orthanc was compiled without support of JPEG"; |
|
96b3ec054b69
reorganization in macros
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2310
diff
changeset
|
1070 throw OrthancException(ErrorCode_NotImplemented); |
|
96b3ec054b69
reorganization in macros
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2310
diff
changeset
|
1071 #endif |
| 1562 | 1072 } |
| 1073 else if (mime == "application/pdf") | |
| 1074 { | |
| 1075 EmbedPdf(content); | |
| 1076 } | |
| 1077 else | |
| 1078 { | |
|
1693
558b25228a23
creation of tag hierarchy from json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1689
diff
changeset
|
1079 LOG(ERROR) << "Unsupported MIME type for the content of a new DICOM file: " << mime; |
| 1562 | 1080 throw OrthancException(ErrorCode_NotImplemented); |
| 1081 } | |
|
1982
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
1082 |
|
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
1083 return true; |
|
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
1084 } |
|
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
1085 |
|
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
1086 |
|
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
1087 void ParsedDicomFile::EmbedContent(const std::string& dataUriScheme) |
|
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
1088 { |
|
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
1089 if (!EmbedContentInternal(dataUriScheme)) |
|
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
1090 { |
|
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
1091 throw OrthancException(ErrorCode_BadFileFormat); |
|
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
1092 } |
|
1555
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1523
diff
changeset
|
1093 } |
|
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1523
diff
changeset
|
1094 |
|
800
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1095 |
|
2445
6e5bc5c6d1a4
Fix to allow creating DICOM instances with empty Specific Character Set (0008,0005)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2409
diff
changeset
|
1096 #if (ORTHANC_ENABLE_JPEG == 1 && \ |
|
2380
96b3ec054b69
reorganization in macros
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2310
diff
changeset
|
1097 ORTHANC_ENABLE_PNG == 1) |
|
1555
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1523
diff
changeset
|
1098 void ParsedDicomFile::EmbedImage(const std::string& mime, |
|
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1523
diff
changeset
|
1099 const std::string& content) |
|
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1523
diff
changeset
|
1100 { |
|
800
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1101 if (mime == "image/png") |
|
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1102 { |
|
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1103 PngReader reader; |
|
1555
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1523
diff
changeset
|
1104 reader.ReadFromMemory(content); |
|
800
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1105 EmbedImage(reader); |
|
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1106 } |
|
1781
5ad4e4d92ecb
AcceptMediaDispatcher bootstrap
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1737
diff
changeset
|
1107 else if (mime == "image/jpeg") |
|
5ad4e4d92ecb
AcceptMediaDispatcher bootstrap
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1737
diff
changeset
|
1108 { |
|
5ad4e4d92ecb
AcceptMediaDispatcher bootstrap
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1737
diff
changeset
|
1109 JpegReader reader; |
|
5ad4e4d92ecb
AcceptMediaDispatcher bootstrap
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1737
diff
changeset
|
1110 reader.ReadFromMemory(content); |
|
5ad4e4d92ecb
AcceptMediaDispatcher bootstrap
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1737
diff
changeset
|
1111 EmbedImage(reader); |
|
5ad4e4d92ecb
AcceptMediaDispatcher bootstrap
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1737
diff
changeset
|
1112 } |
|
800
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1113 else |
|
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1114 { |
|
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1115 throw OrthancException(ErrorCode_NotImplemented); |
|
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1116 } |
|
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1117 } |
|
2380
96b3ec054b69
reorganization in macros
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2310
diff
changeset
|
1118 #endif |
|
800
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1119 |
|
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1120 |
|
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1121 void ParsedDicomFile::EmbedImage(const ImageAccessor& accessor) |
|
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1122 { |
|
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1123 if (accessor.GetFormat() != PixelFormat_Grayscale8 && |
|
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1124 accessor.GetFormat() != PixelFormat_Grayscale16 && |
|
1941
d7b176f7dd1b
test dicom patterns
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1935
diff
changeset
|
1125 accessor.GetFormat() != PixelFormat_SignedGrayscale16 && |
|
800
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1126 accessor.GetFormat() != PixelFormat_RGB24 && |
|
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1127 accessor.GetFormat() != PixelFormat_RGBA32) |
|
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1128 { |
|
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1129 throw OrthancException(ErrorCode_NotImplemented); |
|
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1130 } |
|
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1131 |
|
1982
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
1132 InvalidateCache(); |
|
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
1133 |
|
800
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1134 if (accessor.GetFormat() == PixelFormat_RGBA32) |
|
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1135 { |
|
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1136 LOG(WARNING) << "Getting rid of the alpha channel when embedding a RGBA image inside DICOM"; |
|
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1137 } |
|
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1138 |
|
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1139 // http://dicomiseasy.blogspot.be/2012/08/chapter-12-pixel-data.html |
|
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1140 |
|
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1141 Remove(DICOM_TAG_PIXEL_DATA); |
|
1982
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
1142 ReplacePlainString(DICOM_TAG_COLUMNS, boost::lexical_cast<std::string>(accessor.GetWidth())); |
|
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
1143 ReplacePlainString(DICOM_TAG_ROWS, boost::lexical_cast<std::string>(accessor.GetHeight())); |
|
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
1144 ReplacePlainString(DICOM_TAG_SAMPLES_PER_PIXEL, "1"); |
|
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
1145 ReplacePlainString(DICOM_TAG_NUMBER_OF_FRAMES, "1"); |
|
1941
d7b176f7dd1b
test dicom patterns
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1935
diff
changeset
|
1146 |
|
d7b176f7dd1b
test dicom patterns
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1935
diff
changeset
|
1147 if (accessor.GetFormat() == PixelFormat_SignedGrayscale16) |
|
d7b176f7dd1b
test dicom patterns
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1935
diff
changeset
|
1148 { |
|
1982
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
1149 ReplacePlainString(DICOM_TAG_PIXEL_REPRESENTATION, "1"); |
|
1941
d7b176f7dd1b
test dicom patterns
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1935
diff
changeset
|
1150 } |
|
d7b176f7dd1b
test dicom patterns
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1935
diff
changeset
|
1151 else |
|
d7b176f7dd1b
test dicom patterns
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1935
diff
changeset
|
1152 { |
|
1982
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
1153 ReplacePlainString(DICOM_TAG_PIXEL_REPRESENTATION, "0"); // Unsigned pixels |
|
1941
d7b176f7dd1b
test dicom patterns
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1935
diff
changeset
|
1154 } |
|
d7b176f7dd1b
test dicom patterns
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1935
diff
changeset
|
1155 |
|
1982
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
1156 ReplacePlainString(DICOM_TAG_PLANAR_CONFIGURATION, "0"); // Color channels are interleaved |
|
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
1157 ReplacePlainString(DICOM_TAG_PHOTOMETRIC_INTERPRETATION, "MONOCHROME2"); |
|
800
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1158 |
|
1941
d7b176f7dd1b
test dicom patterns
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1935
diff
changeset
|
1159 unsigned int bytesPerPixel = 0; |
|
800
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1160 |
|
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1161 switch (accessor.GetFormat()) |
|
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1162 { |
|
1941
d7b176f7dd1b
test dicom patterns
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1935
diff
changeset
|
1163 case PixelFormat_Grayscale8: |
|
1982
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
1164 ReplacePlainString(DICOM_TAG_BITS_ALLOCATED, "8"); |
|
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
1165 ReplacePlainString(DICOM_TAG_BITS_STORED, "8"); |
|
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
1166 ReplacePlainString(DICOM_TAG_HIGH_BIT, "7"); |
|
1941
d7b176f7dd1b
test dicom patterns
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1935
diff
changeset
|
1167 bytesPerPixel = 1; |
|
d7b176f7dd1b
test dicom patterns
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1935
diff
changeset
|
1168 break; |
|
d7b176f7dd1b
test dicom patterns
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1935
diff
changeset
|
1169 |
|
800
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1170 case PixelFormat_RGB24: |
|
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1171 case PixelFormat_RGBA32: |
|
1982
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
1172 ReplacePlainString(DICOM_TAG_PHOTOMETRIC_INTERPRETATION, "RGB"); |
|
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
1173 ReplacePlainString(DICOM_TAG_SAMPLES_PER_PIXEL, "3"); |
|
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
1174 ReplacePlainString(DICOM_TAG_BITS_ALLOCATED, "8"); |
|
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
1175 ReplacePlainString(DICOM_TAG_BITS_STORED, "8"); |
|
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
1176 ReplacePlainString(DICOM_TAG_HIGH_BIT, "7"); |
|
800
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1177 bytesPerPixel = 3; |
|
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1178 break; |
|
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1179 |
|
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1180 case PixelFormat_Grayscale16: |
|
1941
d7b176f7dd1b
test dicom patterns
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1935
diff
changeset
|
1181 case PixelFormat_SignedGrayscale16: |
|
1982
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
1182 ReplacePlainString(DICOM_TAG_BITS_ALLOCATED, "16"); |
|
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
1183 ReplacePlainString(DICOM_TAG_BITS_STORED, "16"); |
|
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
1184 ReplacePlainString(DICOM_TAG_HIGH_BIT, "15"); |
|
800
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1185 bytesPerPixel = 2; |
|
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1186 break; |
|
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1187 |
|
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1188 default: |
|
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1189 throw OrthancException(ErrorCode_NotImplemented); |
|
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1190 } |
|
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1191 |
|
1941
d7b176f7dd1b
test dicom patterns
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1935
diff
changeset
|
1192 assert(bytesPerPixel != 0); |
|
d7b176f7dd1b
test dicom patterns
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1935
diff
changeset
|
1193 |
|
800
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1194 DcmTag key(DICOM_TAG_PIXEL_DATA.GetGroup(), |
|
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1195 DICOM_TAG_PIXEL_DATA.GetElement()); |
|
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1196 |
|
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1197 std::auto_ptr<DcmPixelData> pixels(new DcmPixelData(key)); |
|
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|
1198 |
|
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|
1199 unsigned int pitch = accessor.GetWidth() * bytesPerPixel; |
|
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|
1200 Uint8* target = NULL; |
|
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|
1201 pixels->createUint8Array(accessor.GetHeight() * pitch, target); |
|
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|
1202 |
|
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
1203 for (unsigned int y = 0; y < accessor.GetHeight(); y++) |
|
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1204 { |
|
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|
1205 switch (accessor.GetFormat()) |
|
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1206 { |
|
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|
1207 case PixelFormat_RGB24: |
|
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|
1208 case PixelFormat_Grayscale8: |
|
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|
1209 case PixelFormat_Grayscale16: |
|
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changeset
|
1210 case PixelFormat_SignedGrayscale16: |
|
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1211 { |
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|
1212 memcpy(target, reinterpret_cast<const Uint8*>(accessor.GetConstRow(y)), pitch); |
|
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1213 target += pitch; |
|
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1214 break; |
|
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|
1215 } |
|
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changeset
|
1216 |
|
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|
1217 case PixelFormat_RGBA32: |
|
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|
1218 { |
|
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1219 // The alpha channel is not supported by the DICOM standard |
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changeset
|
1220 const Uint8* source = reinterpret_cast<const Uint8*>(accessor.GetConstRow(y)); |
|
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changeset
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1221 for (unsigned int x = 0; x < accessor.GetWidth(); x++, target += 3, source += 4) |
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|
1222 { |
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|
1223 target[0] = source[0]; |
|
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|
1224 target[1] = source[1]; |
|
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|
1225 target[2] = source[2]; |
|
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|
1226 } |
|
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|
1227 |
|
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|
1228 break; |
|
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|
1229 } |
|
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|
1230 |
|
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|
1231 default: |
|
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Sebastien Jodogne <s.jodogne@gmail.com>
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|
1232 throw OrthancException(ErrorCode_NotImplemented); |
|
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1233 } |
|
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1234 } |
|
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|
1235 |
|
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|
1236 if (!pimpl_->file_->getDataset()->insert(pixels.release(), false, false).good()) |
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|
1237 { |
|
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|
1238 throw OrthancException(ErrorCode_InternalError); |
|
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|
1239 } |
|
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1240 } |
|
874
87791ebc1f50
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diff
changeset
|
1241 |
|
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diff
changeset
|
1242 |
|
956
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
1243 Encoding ParsedDicomFile::GetEncoding() const |
|
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
1244 { |
|
1928
84c7eaeb5244
Configuration::GetDefaultEncoding
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
1245 return FromDcmtkBridge::DetectEncoding(*pimpl_->file_->getDataset(), |
|
2381
b8969010b534
uncoupling DCMTK primitives from Orthanc::Configuration
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
1246 GetDefaultDicomEncoding()); |
|
956
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|
1247 } |
|
1090
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|
1248 |
|
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|
1249 |
|
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changeset
|
1250 void ParsedDicomFile::SetEncoding(Encoding encoding) |
|
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|
1251 { |
|
1558
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|
1252 if (encoding == Encoding_Windows1251) |
|
1090
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|
1253 { |
|
1558
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|
1254 // This Cyrillic codepage is not officially supported by the |
|
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diff
changeset
|
1255 // DICOM standard. Do not set the SpecificCharacterSet tag. |
|
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|
1256 return; |
|
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|
1257 } |
|
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Sebastien Jodogne <s.jodogne@gmail.com>
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changeset
|
1258 |
|
1565
4b23310eb7e8
add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
1259 std::string s = GetDicomSpecificCharacterSet(encoding); |
|
1982
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
1260 ReplacePlainString(DICOM_TAG_SPECIFIC_CHARACTER_SET, s); |
|
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|
1261 } |
|
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changeset
|
1262 |
|
2128
9329ba17a069
Possibility to DELETE "dicom-as-json" attachments to reconstruct them
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diff
changeset
|
1263 void ParsedDicomFile::DatasetToJson(Json::Value& target, |
|
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Possibility to DELETE "dicom-as-json" attachments to reconstruct them
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
1264 DicomToJsonFormat format, |
|
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changeset
|
1265 DicomToJsonFlags flags, |
|
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Sebastien Jodogne <s.jodogne@gmail.com>
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|
1266 unsigned int maxStringLength) |
|
1160
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diff
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|
1267 { |
|
2409
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diff
changeset
|
1268 std::set<DicomTag> ignoreTagLength; |
| 2126 | 1269 FromDcmtkBridge::ExtractDicomAsJson(target, *pimpl_->file_->getDataset(), |
|
2409
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changeset
|
1270 format, flags, maxStringLength, |
|
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|
1271 GetDefaultDicomEncoding(), ignoreTagLength); |
|
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|
1272 } |
|
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changeset
|
1273 |
|
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changeset
|
1274 |
|
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changeset
|
1275 void ParsedDicomFile::DatasetToJson(Json::Value& target, |
|
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changeset
|
1276 DicomToJsonFormat format, |
|
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changeset
|
1277 DicomToJsonFlags flags, |
|
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|
1278 unsigned int maxStringLength, |
|
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changeset
|
1279 const std::set<DicomTag>& ignoreTagLength) |
|
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changeset
|
1280 { |
|
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changeset
|
1281 FromDcmtkBridge::ExtractDicomAsJson(target, *pimpl_->file_->getDataset(), |
|
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changeset
|
1282 format, flags, maxStringLength, |
|
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changeset
|
1283 GetDefaultDicomEncoding(), ignoreTagLength); |
|
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|
1284 } |
|
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changeset
|
1285 |
|
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changeset
|
1286 |
|
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changeset
|
1287 void ParsedDicomFile::DatasetToJson(Json::Value& target, |
|
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|
1288 const std::set<DicomTag>& ignoreTagLength) |
|
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|
1289 { |
|
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changeset
|
1290 FromDcmtkBridge::ExtractDicomAsJson(target, *pimpl_->file_->getDataset(), ignoreTagLength); |
|
1160
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diff
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|
1291 } |
|
1555
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
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1523
diff
changeset
|
1292 |
|
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Creation of DICOM files with encapsulated PDF
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diff
changeset
|
1293 |
|
2128
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2126
diff
changeset
|
1294 void ParsedDicomFile::DatasetToJson(Json::Value& target) |
|
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changeset
|
1295 { |
|
2409
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diff
changeset
|
1296 const std::set<DicomTag> ignoreTagLength; |
|
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diff
changeset
|
1297 FromDcmtkBridge::ExtractDicomAsJson(target, *pimpl_->file_->getDataset(), ignoreTagLength); |
|
2128
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diff
changeset
|
1298 } |
|
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diff
changeset
|
1299 |
|
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diff
changeset
|
1300 |
|
1831
3ae2ff249675
"/instances/.../header" to get the meta information (header) of the DICOM instance
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diff
changeset
|
1301 void ParsedDicomFile::HeaderToJson(Json::Value& target, |
|
3ae2ff249675
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diff
changeset
|
1302 DicomToJsonFormat format) |
|
3ae2ff249675
"/instances/.../header" to get the meta information (header) of the DICOM instance
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diff
changeset
|
1303 { |
| 2126 | 1304 FromDcmtkBridge::ExtractHeaderAsJson(target, *pimpl_->file_->getMetaInfo(), format, DicomToJsonFlags_None, 0); |
|
1831
3ae2ff249675
"/instances/.../header" to get the meta information (header) of the DICOM instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1827
diff
changeset
|
1305 } |
|
3ae2ff249675
"/instances/.../header" to get the meta information (header) of the DICOM instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1827
diff
changeset
|
1306 |
|
3ae2ff249675
"/instances/.../header" to get the meta information (header) of the DICOM instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1827
diff
changeset
|
1307 |
|
1555
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1523
diff
changeset
|
1308 bool ParsedDicomFile::HasTag(const DicomTag& tag) const |
|
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1523
diff
changeset
|
1309 { |
|
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1523
diff
changeset
|
1310 DcmTag key(tag.GetGroup(), tag.GetElement()); |
|
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1523
diff
changeset
|
1311 return pimpl_->file_->getDataset()->tagExists(key); |
|
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1523
diff
changeset
|
1312 } |
|
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1523
diff
changeset
|
1313 |
|
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1523
diff
changeset
|
1314 |
|
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1523
diff
changeset
|
1315 void ParsedDicomFile::EmbedPdf(const std::string& pdf) |
|
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1523
diff
changeset
|
1316 { |
|
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1523
diff
changeset
|
1317 if (pdf.size() < 5 || // (*) |
|
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1523
diff
changeset
|
1318 strncmp("%PDF-", pdf.c_str(), 5) != 0) |
|
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1523
diff
changeset
|
1319 { |
|
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1523
diff
changeset
|
1320 LOG(ERROR) << "Not a PDF file"; |
|
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1523
diff
changeset
|
1321 throw OrthancException(ErrorCode_BadFileFormat); |
|
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1523
diff
changeset
|
1322 } |
|
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1523
diff
changeset
|
1323 |
|
1982
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
1324 InvalidateCache(); |
|
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
1325 |
|
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
1326 ReplacePlainString(DICOM_TAG_SOP_CLASS_UID, UID_EncapsulatedPDFStorage); |
|
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
1327 ReplacePlainString(FromDcmtkBridge::Convert(DCM_Modality), "OT"); |
|
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
1328 ReplacePlainString(FromDcmtkBridge::Convert(DCM_ConversionType), "WSD"); |
|
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
1329 ReplacePlainString(FromDcmtkBridge::Convert(DCM_MIMETypeOfEncapsulatedDocument), "application/pdf"); |
|
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
1330 //ReplacePlainString(FromDcmtkBridge::Convert(DCM_SeriesNumber), "1"); |
|
1555
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1523
diff
changeset
|
1331 |
|
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1523
diff
changeset
|
1332 std::auto_ptr<DcmPolymorphOBOW> element(new DcmPolymorphOBOW(DCM_EncapsulatedDocument)); |
|
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1523
diff
changeset
|
1333 |
|
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1523
diff
changeset
|
1334 size_t s = pdf.size(); |
|
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1523
diff
changeset
|
1335 if (s & 1) |
|
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1523
diff
changeset
|
1336 { |
|
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1523
diff
changeset
|
1337 // The size of the buffer must be even |
|
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1523
diff
changeset
|
1338 s += 1; |
|
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1523
diff
changeset
|
1339 } |
|
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1523
diff
changeset
|
1340 |
|
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1523
diff
changeset
|
1341 Uint8* bytes = NULL; |
|
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1523
diff
changeset
|
1342 OFCondition result = element->createUint8Array(s, bytes); |
|
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1523
diff
changeset
|
1343 if (!result.good() || bytes == NULL) |
|
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1523
diff
changeset
|
1344 { |
|
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1523
diff
changeset
|
1345 throw OrthancException(ErrorCode_NotEnoughMemory); |
|
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1523
diff
changeset
|
1346 } |
|
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1523
diff
changeset
|
1347 |
|
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1523
diff
changeset
|
1348 // Blank pad byte (no access violation, as "pdf.size() >= 5" because of (*) ) |
|
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1523
diff
changeset
|
1349 bytes[s - 1] = 0; |
|
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1523
diff
changeset
|
1350 |
|
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1523
diff
changeset
|
1351 memcpy(bytes, pdf.c_str(), pdf.size()); |
|
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1523
diff
changeset
|
1352 |
|
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1523
diff
changeset
|
1353 DcmPolymorphOBOW* obj = element.release(); |
|
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1523
diff
changeset
|
1354 result = pimpl_->file_->getDataset()->insert(obj); |
|
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1523
diff
changeset
|
1355 |
|
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1523
diff
changeset
|
1356 if (!result.good()) |
|
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1523
diff
changeset
|
1357 { |
|
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1523
diff
changeset
|
1358 delete obj; |
|
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1523
diff
changeset
|
1359 throw OrthancException(ErrorCode_NotEnoughMemory); |
|
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1523
diff
changeset
|
1360 } |
|
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1523
diff
changeset
|
1361 } |
|
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1523
diff
changeset
|
1362 |
|
1556
b8dc2f855a83
Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1555
diff
changeset
|
1363 |
|
b8dc2f855a83
Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1555
diff
changeset
|
1364 bool ParsedDicomFile::ExtractPdf(std::string& pdf) |
|
b8dc2f855a83
Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1555
diff
changeset
|
1365 { |
|
b8dc2f855a83
Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1555
diff
changeset
|
1366 std::string sop, mime; |
|
b8dc2f855a83
Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1555
diff
changeset
|
1367 |
|
b8dc2f855a83
Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1555
diff
changeset
|
1368 if (!GetTagValue(sop, DICOM_TAG_SOP_CLASS_UID) || |
|
b8dc2f855a83
Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1555
diff
changeset
|
1369 !GetTagValue(mime, FromDcmtkBridge::Convert(DCM_MIMETypeOfEncapsulatedDocument)) || |
|
b8dc2f855a83
Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1555
diff
changeset
|
1370 sop != UID_EncapsulatedPDFStorage || |
|
b8dc2f855a83
Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1555
diff
changeset
|
1371 mime != "application/pdf") |
|
b8dc2f855a83
Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1555
diff
changeset
|
1372 { |
|
b8dc2f855a83
Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1555
diff
changeset
|
1373 return false; |
|
b8dc2f855a83
Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1555
diff
changeset
|
1374 } |
|
b8dc2f855a83
Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1555
diff
changeset
|
1375 |
|
b8dc2f855a83
Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1555
diff
changeset
|
1376 if (!GetTagValue(pdf, DICOM_TAG_ENCAPSULATED_DOCUMENT)) |
|
b8dc2f855a83
Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1555
diff
changeset
|
1377 { |
|
b8dc2f855a83
Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1555
diff
changeset
|
1378 return false; |
|
b8dc2f855a83
Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1555
diff
changeset
|
1379 } |
|
b8dc2f855a83
Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1555
diff
changeset
|
1380 |
|
b8dc2f855a83
Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1555
diff
changeset
|
1381 // Strip the possible pad byte at the end of file, because the |
|
b8dc2f855a83
Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1555
diff
changeset
|
1382 // encapsulated documents must always have an even length. The PDF |
|
b8dc2f855a83
Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1555
diff
changeset
|
1383 // format expects files to end with %%EOF followed by CR/LF. If |
|
b8dc2f855a83
Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1555
diff
changeset
|
1384 // the last character of the file is not a CR or LF, we assume it |
|
b8dc2f855a83
Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1555
diff
changeset
|
1385 // is a pad byte and remove it. |
|
b8dc2f855a83
Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1555
diff
changeset
|
1386 if (pdf.size() > 0) |
|
b8dc2f855a83
Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1555
diff
changeset
|
1387 { |
|
b8dc2f855a83
Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1555
diff
changeset
|
1388 char last = *pdf.rbegin(); |
|
b8dc2f855a83
Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1555
diff
changeset
|
1389 |
|
b8dc2f855a83
Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1555
diff
changeset
|
1390 if (last != 10 && last != 13) |
|
b8dc2f855a83
Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1555
diff
changeset
|
1391 { |
|
b8dc2f855a83
Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1555
diff
changeset
|
1392 pdf.resize(pdf.size() - 1); |
|
b8dc2f855a83
Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1555
diff
changeset
|
1393 } |
|
b8dc2f855a83
Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1555
diff
changeset
|
1394 } |
|
b8dc2f855a83
Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1555
diff
changeset
|
1395 |
|
b8dc2f855a83
Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1555
diff
changeset
|
1396 return true; |
|
b8dc2f855a83
Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1555
diff
changeset
|
1397 } |
|
1662
09be34b2f30e
ParsedDicomFile::Convert()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1655
diff
changeset
|
1398 |
|
09be34b2f30e
ParsedDicomFile::Convert()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1655
diff
changeset
|
1399 |
|
1818
1065401501fb
ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1805
diff
changeset
|
1400 ParsedDicomFile* ParsedDicomFile::CreateFromJson(const Json::Value& json, |
|
1065401501fb
ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1805
diff
changeset
|
1401 DicomFromJsonFlags flags) |
|
1065401501fb
ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1805
diff
changeset
|
1402 { |
|
2445
6e5bc5c6d1a4
Fix to allow creating DICOM instances with empty Specific Character Set (0008,0005)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2409
diff
changeset
|
1403 const bool generateIdentifiers = (flags & DicomFromJsonFlags_GenerateIdentifiers) ? true : false; |
|
6e5bc5c6d1a4
Fix to allow creating DICOM instances with empty Specific Character Set (0008,0005)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2409
diff
changeset
|
1404 const bool decodeDataUriScheme = (flags & DicomFromJsonFlags_DecodeDataUriScheme) ? true : false; |
|
1818
1065401501fb
ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1805
diff
changeset
|
1405 |
|
1065401501fb
ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1805
diff
changeset
|
1406 std::auto_ptr<ParsedDicomFile> result(new ParsedDicomFile(generateIdentifiers)); |
|
2381
b8969010b534
uncoupling DCMTK primitives from Orthanc::Configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2380
diff
changeset
|
1407 result->SetEncoding(FromDcmtkBridge::ExtractEncoding(json, GetDefaultDicomEncoding())); |
|
1818
1065401501fb
ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1805
diff
changeset
|
1408 |
|
1934
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1929
diff
changeset
|
1409 const Json::Value::Members tags = json.getMemberNames(); |
|
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1929
diff
changeset
|
1410 |
|
1818
1065401501fb
ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1805
diff
changeset
|
1411 for (size_t i = 0; i < tags.size(); i++) |
|
1065401501fb
ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1805
diff
changeset
|
1412 { |
|
1065401501fb
ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1805
diff
changeset
|
1413 DicomTag tag = FromDcmtkBridge::ParseTag(tags[i]); |
|
1065401501fb
ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1805
diff
changeset
|
1414 const Json::Value& value = json[tags[i]]; |
|
1065401501fb
ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1805
diff
changeset
|
1415 |
|
1065401501fb
ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1805
diff
changeset
|
1416 if (tag == DICOM_TAG_PIXEL_DATA || |
|
1065401501fb
ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1805
diff
changeset
|
1417 tag == DICOM_TAG_ENCAPSULATED_DOCUMENT) |
|
1065401501fb
ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1805
diff
changeset
|
1418 { |
|
1065401501fb
ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1805
diff
changeset
|
1419 if (value.type() != Json::stringValue) |
|
1065401501fb
ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1805
diff
changeset
|
1420 { |
|
1065401501fb
ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1805
diff
changeset
|
1421 throw OrthancException(ErrorCode_BadRequest); |
|
1065401501fb
ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1805
diff
changeset
|
1422 } |
|
1065401501fb
ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1805
diff
changeset
|
1423 else |
|
1065401501fb
ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1805
diff
changeset
|
1424 { |
|
1065401501fb
ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1805
diff
changeset
|
1425 result->EmbedContent(value.asString()); |
|
1065401501fb
ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1805
diff
changeset
|
1426 } |
|
1065401501fb
ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1805
diff
changeset
|
1427 } |
|
1065401501fb
ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1805
diff
changeset
|
1428 else if (tag != DICOM_TAG_SPECIFIC_CHARACTER_SET) |
|
1065401501fb
ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1805
diff
changeset
|
1429 { |
|
1982
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
1430 result->Replace(tag, value, decodeDataUriScheme, DicomReplaceMode_InsertIfAbsent); |
|
1818
1065401501fb
ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1805
diff
changeset
|
1431 } |
|
1065401501fb
ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1805
diff
changeset
|
1432 } |
|
1065401501fb
ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1805
diff
changeset
|
1433 |
|
1065401501fb
ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1805
diff
changeset
|
1434 return result.release(); |
|
1065401501fb
ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1805
diff
changeset
|
1435 } |
|
1924
6c73df12ca51
New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1913
diff
changeset
|
1436 |
|
6c73df12ca51
New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1913
diff
changeset
|
1437 |
|
6c73df12ca51
New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1913
diff
changeset
|
1438 void ParsedDicomFile::GetRawFrame(std::string& target, |
|
6c73df12ca51
New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1913
diff
changeset
|
1439 std::string& mime, |
|
6c73df12ca51
New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1913
diff
changeset
|
1440 unsigned int frameId) |
|
6c73df12ca51
New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1913
diff
changeset
|
1441 { |
|
6c73df12ca51
New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1913
diff
changeset
|
1442 if (pimpl_->frameIndex_.get() == NULL) |
|
6c73df12ca51
New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1913
diff
changeset
|
1443 { |
| 1956 | 1444 pimpl_->frameIndex_.reset(new DicomFrameIndex(*pimpl_->file_)); |
|
1924
6c73df12ca51
New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1913
diff
changeset
|
1445 } |
|
6c73df12ca51
New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1913
diff
changeset
|
1446 |
|
6c73df12ca51
New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1913
diff
changeset
|
1447 pimpl_->frameIndex_->GetRawFrame(target, frameId); |
|
6c73df12ca51
New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1913
diff
changeset
|
1448 |
|
6c73df12ca51
New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1913
diff
changeset
|
1449 E_TransferSyntax transferSyntax = pimpl_->file_->getDataset()->getOriginalXfer(); |
|
6c73df12ca51
New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1913
diff
changeset
|
1450 switch (transferSyntax) |
|
6c73df12ca51
New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1913
diff
changeset
|
1451 { |
|
1946
40b7a0176305
fix compilation against DCMTK 3.6.1
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1945
diff
changeset
|
1452 case EXS_JPEGProcess1: |
|
1924
6c73df12ca51
New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1913
diff
changeset
|
1453 mime = "image/jpeg"; |
|
6c73df12ca51
New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1913
diff
changeset
|
1454 break; |
|
6c73df12ca51
New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1913
diff
changeset
|
1455 |
|
6c73df12ca51
New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1913
diff
changeset
|
1456 case EXS_JPEG2000LosslessOnly: |
|
6c73df12ca51
New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1913
diff
changeset
|
1457 case EXS_JPEG2000: |
|
6c73df12ca51
New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1913
diff
changeset
|
1458 mime = "image/jp2"; |
| 2016 | 1459 break; |
|
1924
6c73df12ca51
New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1913
diff
changeset
|
1460 |
|
6c73df12ca51
New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1913
diff
changeset
|
1461 default: |
|
6c73df12ca51
New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1913
diff
changeset
|
1462 mime = "application/octet-stream"; |
|
6c73df12ca51
New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1913
diff
changeset
|
1463 break; |
|
6c73df12ca51
New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1913
diff
changeset
|
1464 } |
|
6c73df12ca51
New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1913
diff
changeset
|
1465 } |
|
6c73df12ca51
New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1913
diff
changeset
|
1466 |
|
6c73df12ca51
New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1913
diff
changeset
|
1467 |
|
6c73df12ca51
New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1913
diff
changeset
|
1468 void ParsedDicomFile::InvalidateCache() |
|
6c73df12ca51
New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1913
diff
changeset
|
1469 { |
|
6c73df12ca51
New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1913
diff
changeset
|
1470 pimpl_->frameIndex_.reset(NULL); |
|
6c73df12ca51
New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1913
diff
changeset
|
1471 } |
|
1950
533ff46e944b
return a single raw frame from DICOM videos
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1946
diff
changeset
|
1472 |
|
533ff46e944b
return a single raw frame from DICOM videos
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1946
diff
changeset
|
1473 |
|
533ff46e944b
return a single raw frame from DICOM videos
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1946
diff
changeset
|
1474 unsigned int ParsedDicomFile::GetFramesCount() const |
|
533ff46e944b
return a single raw frame from DICOM videos
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1946
diff
changeset
|
1475 { |
| 1956 | 1476 return DicomFrameIndex::GetFramesCount(*pimpl_->file_); |
|
1950
533ff46e944b
return a single raw frame from DICOM videos
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1946
diff
changeset
|
1477 } |
|
2207
6dc3bdb4088b
Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2202
diff
changeset
|
1478 |
|
6dc3bdb4088b
Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2202
diff
changeset
|
1479 |
|
6dc3bdb4088b
Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2202
diff
changeset
|
1480 void ParsedDicomFile::ChangeEncoding(Encoding target) |
|
6dc3bdb4088b
Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2202
diff
changeset
|
1481 { |
|
6dc3bdb4088b
Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2202
diff
changeset
|
1482 Encoding source = GetEncoding(); |
|
6dc3bdb4088b
Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2202
diff
changeset
|
1483 |
|
6dc3bdb4088b
Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2202
diff
changeset
|
1484 if (source != target) // Avoid unnecessary conversion |
|
6dc3bdb4088b
Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2202
diff
changeset
|
1485 { |
|
6dc3bdb4088b
Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2202
diff
changeset
|
1486 ReplacePlainString(DICOM_TAG_SPECIFIC_CHARACTER_SET, GetDicomSpecificCharacterSet(target)); |
|
6dc3bdb4088b
Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2202
diff
changeset
|
1487 FromDcmtkBridge::ChangeStringEncoding(*pimpl_->file_->getDataset(), source, target); |
|
6dc3bdb4088b
Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2202
diff
changeset
|
1488 } |
|
6dc3bdb4088b
Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2202
diff
changeset
|
1489 } |
|
2209
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2207
diff
changeset
|
1490 |
|
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2207
diff
changeset
|
1491 |
|
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2207
diff
changeset
|
1492 void ParsedDicomFile::ExtractDicomSummary(DicomMap& target) const |
|
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2207
diff
changeset
|
1493 { |
|
2381
b8969010b534
uncoupling DCMTK primitives from Orthanc::Configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2380
diff
changeset
|
1494 FromDcmtkBridge::ExtractDicomSummary(target, *pimpl_->file_->getDataset()); |
|
2209
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2207
diff
changeset
|
1495 } |
|
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2207
diff
changeset
|
1496 |
|
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2207
diff
changeset
|
1497 |
|
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2207
diff
changeset
|
1498 bool ParsedDicomFile::LookupTransferSyntax(std::string& result) |
|
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2207
diff
changeset
|
1499 { |
|
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2207
diff
changeset
|
1500 return FromDcmtkBridge::LookupTransferSyntax(result, *pimpl_->file_); |
|
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2207
diff
changeset
|
1501 } |
|
2281
e002430baa41
Fix issue #44 (Bad interpretation of photometric interpretation MONOCHROME1)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2244
diff
changeset
|
1502 |
|
e002430baa41
Fix issue #44 (Bad interpretation of photometric interpretation MONOCHROME1)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2244
diff
changeset
|
1503 |
|
e002430baa41
Fix issue #44 (Bad interpretation of photometric interpretation MONOCHROME1)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2244
diff
changeset
|
1504 bool ParsedDicomFile::LookupPhotometricInterpretation(PhotometricInterpretation& result) const |
|
e002430baa41
Fix issue #44 (Bad interpretation of photometric interpretation MONOCHROME1)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2244
diff
changeset
|
1505 { |
|
e002430baa41
Fix issue #44 (Bad interpretation of photometric interpretation MONOCHROME1)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2244
diff
changeset
|
1506 DcmTagKey k(DICOM_TAG_PHOTOMETRIC_INTERPRETATION.GetGroup(), |
|
e002430baa41
Fix issue #44 (Bad interpretation of photometric interpretation MONOCHROME1)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2244
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1507 DICOM_TAG_PHOTOMETRIC_INTERPRETATION.GetElement()); |
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e002430baa41
Fix issue #44 (Bad interpretation of photometric interpretation MONOCHROME1)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2244
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1508 |
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e002430baa41
Fix issue #44 (Bad interpretation of photometric interpretation MONOCHROME1)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2244
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1509 DcmDataset& dataset = *pimpl_->file_->getDataset(); |
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e002430baa41
Fix issue #44 (Bad interpretation of photometric interpretation MONOCHROME1)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2244
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1510 |
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e002430baa41
Fix issue #44 (Bad interpretation of photometric interpretation MONOCHROME1)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2244
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1511 const char *c = NULL; |
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e002430baa41
Fix issue #44 (Bad interpretation of photometric interpretation MONOCHROME1)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2244
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1512 if (dataset.findAndGetString(k, c).good() && |
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e002430baa41
Fix issue #44 (Bad interpretation of photometric interpretation MONOCHROME1)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2244
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1513 c != NULL) |
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e002430baa41
Fix issue #44 (Bad interpretation of photometric interpretation MONOCHROME1)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2244
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1514 { |
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e002430baa41
Fix issue #44 (Bad interpretation of photometric interpretation MONOCHROME1)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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1515 result = StringToPhotometricInterpretation(c); |
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e002430baa41
Fix issue #44 (Bad interpretation of photometric interpretation MONOCHROME1)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2244
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1516 return true; |
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e002430baa41
Fix issue #44 (Bad interpretation of photometric interpretation MONOCHROME1)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2244
diff
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1517 } |
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e002430baa41
Fix issue #44 (Bad interpretation of photometric interpretation MONOCHROME1)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2244
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1518 else |
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e002430baa41
Fix issue #44 (Bad interpretation of photometric interpretation MONOCHROME1)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2244
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1519 { |
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e002430baa41
Fix issue #44 (Bad interpretation of photometric interpretation MONOCHROME1)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2244
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1520 return false; |
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e002430baa41
Fix issue #44 (Bad interpretation of photometric interpretation MONOCHROME1)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2244
diff
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1521 } |
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e002430baa41
Fix issue #44 (Bad interpretation of photometric interpretation MONOCHROME1)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2244
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1522 } |
| 790 | 1523 } |