Mercurial > hg > orthanc
annotate OrthancServer/RadiotherapyRestApi.cpp @ 538:505d6deb9947 dicom-rt
access contours by instances
| author | Sebastien Jodogne <s.jodogne@gmail.com> |
|---|---|
| date | Tue, 03 Sep 2013 17:45:26 +0200 |
| parents | da8e064d0d49 |
| children | c8347eef225b |
| rev | line source |
|---|---|
| 526 | 1 /** |
| 2 * Orthanc - A Lightweight, RESTful DICOM Store | |
| 3 * Copyright (C) 2012-2013 Medical Physics Department, CHU of Liege, | |
| 4 * Belgium | |
| 5 * | |
| 6 * This program is free software: you can redistribute it and/or | |
| 7 * modify it under the terms of the GNU General Public License as | |
| 8 * published by the Free Software Foundation, either version 3 of the | |
| 9 * License, or (at your option) any later version. | |
| 10 * | |
| 11 * In addition, as a special exception, the copyright holders of this | |
| 12 * program give permission to link the code of its release with the | |
| 13 * OpenSSL project's "OpenSSL" library (or with modified versions of it | |
| 14 * that use the same license as the "OpenSSL" library), and distribute | |
| 15 * the linked executables. You must obey the GNU General Public License | |
| 16 * in all respects for all of the code used other than "OpenSSL". If you | |
| 17 * modify file(s) with this exception, you may extend this exception to | |
| 18 * your version of the file(s), but you are not obligated to do so. If | |
| 19 * you do not wish to do so, delete this exception statement from your | |
| 20 * version. If you delete this exception statement from all source files | |
| 21 * in the program, then also delete it here. | |
| 22 * | |
| 23 * This program is distributed in the hope that it will be useful, but | |
| 24 * WITHOUT ANY WARRANTY; without even the implied warranty of | |
| 25 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU | |
| 26 * General Public License for more details. | |
| 27 * | |
| 28 * You should have received a copy of the GNU General Public License | |
| 29 * along with this program. If not, see <http://www.gnu.org/licenses/>. | |
| 30 **/ | |
| 31 | |
| 32 | |
| 33 #include "RadiotherapyRestApi.h" | |
| 34 | |
| 35 #include "ServerToolbox.h" | |
| 36 | |
| 37 #define RETRIEVE_CONTEXT(call) \ | |
| 38 OrthancRestApi& contextApi = \ | |
| 39 dynamic_cast<OrthancRestApi&>(call.GetContext()); \ | |
| 40 ServerContext& context = contextApi.GetContext() | |
| 41 | |
| 42 | |
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43 // DICOM tags for RT-STRUCT |
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44 |
| 526 | 45 #define REFERENCED_STUDY_SEQUENCE "0008,1110" |
| 46 #define REFERENCED_SOP_INSTANCE_UID "0008,1155" | |
| 47 #define FRAME_OF_REFERENCE_UID "0020,0052" | |
| 48 #define REFERENCED_FRAME_OF_REFERENCE_SEQUENCE "3006,0010" | |
| 529 | 49 #define STRUCTURE_SET_ROI_SEQUENCE "3006,0020" |
| 50 #define ROI_NUMBER "3006,0022" | |
| 51 #define ROI_NAME "3006,0026" | |
| 52 #define ROI_GENERATION_ALGORITHM "3006,0036" | |
| 53 #define ROI_CONTOUR_SEQUENCE "3006,0039" | |
| 54 #define REFERENCED_ROI_NUMBER "3006,0084" | |
| 55 #define ROI_DISPLAY_COLOR "3006,002a" | |
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56 #define CONTOUR_SEQUENCE "3006,0040" |
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57 #define CONTOUR_IMAGE_SEQUENCE "3006,0016" |
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58 #define CONTOUR_GEOMETRIC_TYPE "3006,0042" |
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59 #define NUMBER_OF_CONTOUR_POINTS "3006,0046" |
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60 #define CONTOUR_DATA "3006,0050" |
| 535 | 61 #define CONTOUR_SLAB_THICKNESS "3006,0044" |
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62 |
| 526 | 63 |
| 64 namespace Orthanc | |
| 65 { | |
| 66 static bool CheckSeriesModality(Json::Value& study, | |
| 67 Json::Value& series, | |
| 68 Json::Value& content, | |
| 69 ServerContext& context, | |
| 70 const std::string& seriesId, | |
| 71 const std::string& modality) | |
| 72 { | |
| 73 if (!context.GetIndex().LookupResource(series, seriesId, ResourceType_Series)) | |
| 74 { | |
| 75 return false; | |
| 76 } | |
| 77 | |
| 78 // Retrieve the parent study | |
| 79 std::string studyId = series["ParentStudy"].asString(); | |
| 80 if (!context.GetIndex().LookupResource(study, studyId, ResourceType_Study)) | |
| 81 { | |
| 82 return false; | |
| 83 } | |
| 84 | |
| 85 // Check the modality and that there is a single instance inside the series | |
| 86 if (!series["MainDicomTags"].isMember("Modality") || | |
| 87 series["MainDicomTags"]["Modality"].asString() != modality || | |
| 88 series["Instances"].size() != 1) | |
| 89 { | |
| 90 return false; | |
| 91 } | |
| 92 | |
| 93 // Retrieve the instance data | |
| 94 std::string instanceId = series["Instances"][0].asString(); | |
| 95 | |
| 96 Json::Value info; | |
| 97 context.ReadJson(content, instanceId); | |
| 98 | |
| 99 return true; | |
| 100 } | |
| 101 | |
| 102 | |
| 535 | 103 static bool ContourToPoints(Json::Value& result, |
| 104 const Json::Value& source) | |
| 105 { | |
| 106 std::vector<std::string> points; | |
| 107 Toolbox::Split(points, source.asString(), '\\'); | |
| 108 | |
| 109 if (points.size() % 3 != 0) | |
| 110 { | |
| 111 return false; | |
| 112 } | |
| 113 | |
| 114 result = Json::arrayValue; | |
| 115 | |
| 116 for (size_t k = 0; k < points.size(); k += 3) | |
| 117 { | |
| 118 Json::Value p = Json::arrayValue; | |
| 119 | |
| 120 try | |
| 121 { | |
| 122 p.append(boost::lexical_cast<float>(points[k])); | |
| 123 p.append(boost::lexical_cast<float>(points[k + 1])); | |
| 124 p.append(boost::lexical_cast<float>(points[k + 2])); | |
| 125 } | |
| 126 catch (boost::bad_lexical_cast) | |
| 127 { | |
| 128 return false; | |
| 129 } | |
| 130 | |
| 131 result.append(p); | |
| 132 } | |
| 133 | |
| 134 return true; | |
| 135 } | |
| 136 | |
| 137 | |
| 526 | 138 static bool GetRtStructuresInfo(Json::Value& study, |
| 139 Json::Value& series, | |
| 140 Json::Value& content, | |
| 141 std::string& frameOfReference, | |
| 142 ServerContext& context, | |
| 143 const std::string& seriesId) | |
| 144 { | |
| 145 if (!CheckSeriesModality(study, series, content, context, seriesId, "RTSTRUCT")) | |
| 146 { | |
| 147 return false; | |
| 148 } | |
| 149 | |
| 150 // Check that the "ReferencedStudySequence" is the same as the parent study. | |
| 151 if (!content.isMember(REFERENCED_STUDY_SEQUENCE) || | |
| 152 content[REFERENCED_STUDY_SEQUENCE]["Value"].size() != 1 || | |
| 153 !content[REFERENCED_STUDY_SEQUENCE]["Value"][0].isMember(REFERENCED_SOP_INSTANCE_UID) || | |
| 154 content[REFERENCED_STUDY_SEQUENCE]["Value"][0][REFERENCED_SOP_INSTANCE_UID]["Value"].asString() != | |
| 155 study["MainDicomTags"]["StudyInstanceUID"].asString()) | |
| 156 { | |
| 157 return false; | |
| 158 } | |
| 159 | |
| 160 // Lookup for the frame of reference. Orthanc does not support | |
| 161 // RTSTRUCT with multiple frames of reference. | |
| 162 if (!content.isMember(REFERENCED_FRAME_OF_REFERENCE_SEQUENCE) || | |
| 163 content[REFERENCED_FRAME_OF_REFERENCE_SEQUENCE]["Value"].size() != 1 || | |
| 164 !content[REFERENCED_FRAME_OF_REFERENCE_SEQUENCE]["Value"][0].isMember(FRAME_OF_REFERENCE_UID)) | |
| 165 { | |
| 166 return false; | |
| 167 } | |
| 168 | |
| 169 frameOfReference = content[REFERENCED_FRAME_OF_REFERENCE_SEQUENCE]["Value"][0][FRAME_OF_REFERENCE_UID]["Value"].asString(); | |
| 170 | |
| 171 return true; | |
| 172 } | |
| 173 | |
| 174 | |
| 535 | 175 static bool GetRtStructuresRoi(Json::Value& result, |
| 176 Json::Value& contourSequence, | |
| 177 std::string& instanceId, | |
| 178 ServerContext& context, | |
| 179 const std::string& seriesId, | |
| 180 const std::string& roiNumber) | |
| 181 { | |
| 182 Json::Value study, series, content; | |
| 183 std::string frameOfReference; | |
| 184 | |
| 185 if (!GetRtStructuresInfo(study, series, content, frameOfReference, context, seriesId)) | |
| 186 { | |
| 187 return false; | |
| 188 } | |
| 189 | |
| 190 if (!content.isMember(STRUCTURE_SET_ROI_SEQUENCE) || | |
| 191 !content.isMember(ROI_CONTOUR_SEQUENCE)) | |
| 192 { | |
| 193 return false; | |
| 194 } | |
| 195 | |
| 196 instanceId = series["Instances"][0].asString(); | |
| 197 | |
| 198 bool found = false; | |
| 199 | |
| 200 for (Json::Value::ArrayIndex i = 0; i < content[STRUCTURE_SET_ROI_SEQUENCE]["Value"].size(); i++) | |
| 201 { | |
| 202 const Json::Value& roi = content[STRUCTURE_SET_ROI_SEQUENCE]["Value"][i]; | |
| 203 | |
| 204 if (roi.isMember(ROI_NUMBER) && | |
| 205 roi.isMember(ROI_NAME) && | |
| 206 roi[ROI_NUMBER]["Value"].asString() == roiNumber) | |
| 207 { | |
| 208 result["InternalIndex"] = i; | |
| 209 result["Number"] = boost::lexical_cast<unsigned int>(roiNumber); | |
| 210 result["Name"] = roi[ROI_NAME]["Value"].asString(); | |
| 211 result["GenerationAlgorithm"] = roi[ROI_GENERATION_ALGORITHM]["Value"].asString(); | |
| 212 found = true; | |
| 213 } | |
| 214 } | |
| 215 | |
| 216 if (!found) | |
| 217 { | |
| 218 return false; | |
| 219 } | |
| 220 | |
| 221 for (Json::Value::ArrayIndex i = 0; i < content[ROI_CONTOUR_SEQUENCE]["Value"].size(); i++) | |
| 222 { | |
| 223 const Json::Value& contour = content[ROI_CONTOUR_SEQUENCE]["Value"][i]; | |
| 224 | |
| 225 if (contour.isMember(REFERENCED_ROI_NUMBER) && | |
| 226 contour.isMember(ROI_DISPLAY_COLOR) && | |
| 227 contour.isMember(CONTOUR_SEQUENCE) && | |
| 228 contour[REFERENCED_ROI_NUMBER]["Value"].asString() == roiNumber) | |
| 229 { | |
| 230 std::vector<std::string> color; | |
| 231 Toolbox::Split(color, contour[ROI_DISPLAY_COLOR]["Value"].asString(), '\\'); | |
| 232 | |
| 233 result["DisplayColor"] = Json::arrayValue; | |
| 234 if (color.size() != 3) | |
| 235 { | |
| 236 return false; | |
| 237 } | |
| 238 | |
| 239 for (size_t k = 0; k < color.size(); k++) | |
| 240 { | |
| 241 try | |
| 242 { | |
| 243 result["DisplayColor"].append(boost::lexical_cast<int>(color[k])); | |
| 244 } | |
| 245 catch (boost::bad_lexical_cast) | |
| 246 { | |
| 247 return false; | |
| 248 } | |
| 249 } | |
| 250 | |
| 251 contourSequence = contour[CONTOUR_SEQUENCE]["Value"]; | |
| 252 | |
| 253 return true; | |
| 254 } | |
| 255 } | |
| 256 | |
| 257 return false; | |
| 258 } | |
| 259 | |
| 260 | |
| 526 | 261 static void GetRtStructuresInfo(RestApi::GetCall& call) |
| 262 { | |
| 263 RETRIEVE_CONTEXT(call); | |
| 264 | |
| 265 Json::Value study, series, content; | |
| 266 std::string frameOfReference; | |
| 267 if (GetRtStructuresInfo(study, series, content, frameOfReference, context, call.GetUriComponent("id", ""))) | |
| 268 { | |
| 269 Json::Value result; | |
| 270 | |
| 271 result["Study"] = study["ID"]; | |
| 272 | |
| 273 | |
| 274 // Lookup the series with the same frame of reference inside this study | |
| 275 result["RelatedSeries"] = Json::arrayValue; | |
| 276 | |
| 277 for (Json::Value::ArrayIndex i = 0; i < study["Series"].size(); i++) | |
| 278 { | |
| 279 Json::Value otherSeries; | |
| 280 if (context.GetIndex().LookupResource(otherSeries, study["Series"][i].asString(), ResourceType_Series) && | |
| 281 otherSeries["Instances"].size() > 0) | |
| 282 { | |
| 283 Json::Value info; | |
| 284 context.ReadJson(info, otherSeries["Instances"][0].asString()); | |
| 285 | |
| 286 if (info.isMember(FRAME_OF_REFERENCE_UID)) | |
| 287 { | |
| 288 result["RelatedSeries"].append(study["Series"][i].asString()); | |
| 289 } | |
| 290 } | |
| 291 } | |
| 292 | |
| 529 | 293 |
| 526 | 294 call.GetOutput().AnswerJson(result); |
| 295 } | |
| 296 } | |
| 297 | |
| 298 | |
| 529 | 299 static void GetRtStructuresListOfROIs(RestApi::GetCall& call) |
| 300 { | |
| 301 RETRIEVE_CONTEXT(call); | |
| 302 | |
| 303 Json::Value study, series, content; | |
| 304 std::string frameOfReference; | |
| 305 if (GetRtStructuresInfo(study, series, content, frameOfReference, context, call.GetUriComponent("id", ""))) | |
| 306 { | |
| 307 Json::Value result(Json::arrayValue); | |
| 308 | |
| 309 if (content.isMember(STRUCTURE_SET_ROI_SEQUENCE)) | |
| 310 { | |
| 311 for (Json::Value::ArrayIndex i = 0; i < content[STRUCTURE_SET_ROI_SEQUENCE]["Value"].size(); i++) | |
| 312 { | |
| 313 if (content[STRUCTURE_SET_ROI_SEQUENCE]["Value"][i].isMember(ROI_NUMBER)) | |
| 314 { | |
| 535 | 315 result.append(boost::lexical_cast<int>(content[STRUCTURE_SET_ROI_SEQUENCE]["Value"][i][ROI_NUMBER]["Value"].asString())); |
| 529 | 316 } |
| 317 } | |
| 318 } | |
| 319 | |
| 320 call.GetOutput().AnswerJson(result); | |
| 321 } | |
| 322 } | |
| 323 | |
| 324 | |
| 325 static void GetRtStructuresROI(RestApi::GetCall& call) | |
| 326 { | |
| 535 | 327 RETRIEVE_CONTEXT(call); |
| 328 | |
| 329 Json::Value roi, contour; | |
| 330 std::string instanceId; | |
| 331 | |
| 332 if (GetRtStructuresRoi(roi, contour, instanceId, context, | |
| 333 call.GetUriComponent("id", ""), | |
| 334 call.GetUriComponent("roi", ""))) | |
| 335 { | |
| 336 roi.removeMember("InternalIndex"); | |
| 337 call.GetOutput().AnswerJson(roi); | |
| 338 } | |
| 339 } | |
| 340 | |
| 341 | |
| 342 static void GetRtStructuresROIPoints(RestApi::GetCall& call) | |
| 343 { | |
| 344 RETRIEVE_CONTEXT(call); | |
| 345 | |
| 346 Json::Value roi, contour; | |
| 347 std::string instanceId; | |
| 348 | |
| 349 if (GetRtStructuresRoi(roi, contour, instanceId, context, | |
| 350 call.GetUriComponent("id", ""), | |
| 351 call.GetUriComponent("roi", ""))) | |
| 352 { | |
| 353 Json::Value result = Json::arrayValue; | |
| 354 | |
| 355 for (Json::Value::ArrayIndex i = 0; i < contour.size(); i++) | |
| 356 { | |
| 357 if (contour[i][CONTOUR_GEOMETRIC_TYPE]["Value"].asString() == "POINT") | |
| 358 { | |
| 359 Json::Value p; | |
| 360 if (ContourToPoints(p, contour[i][CONTOUR_DATA]["Value"].asString()) && | |
| 361 p.size() == 1) | |
| 362 { | |
| 363 result.append(p[0]); | |
| 364 } | |
| 365 } | |
| 366 } | |
| 367 | |
| 368 call.GetOutput().AnswerJson(result); | |
| 369 } | |
| 370 } | |
| 371 | |
| 372 | |
| 373 static void GetRtStructuresListOfClosedPlanars(RestApi::GetCall& call) | |
| 374 { | |
| 375 RETRIEVE_CONTEXT(call); | |
| 376 | |
| 377 Json::Value roi, contour; | |
| 378 std::string instanceId; | |
| 379 | |
| 380 if (GetRtStructuresRoi(roi, contour, instanceId, context, | |
| 381 call.GetUriComponent("id", ""), | |
| 382 call.GetUriComponent("roi", ""))) | |
| 383 { | |
| 384 Json::Value result = Json::arrayValue; | |
| 385 | |
| 386 for (Json::Value::ArrayIndex i = 0; i < contour.size(); i++) | |
| 387 { | |
| 388 if (contour[i].isMember(CONTOUR_IMAGE_SEQUENCE) && | |
| 389 contour[i].isMember(CONTOUR_GEOMETRIC_TYPE) && | |
| 390 contour[i].isMember(NUMBER_OF_CONTOUR_POINTS) && | |
| 391 contour[i].isMember(CONTOUR_DATA) && | |
| 392 contour[i][CONTOUR_IMAGE_SEQUENCE]["Value"].size() == 1 && | |
| 393 contour[i][CONTOUR_IMAGE_SEQUENCE]["Value"][0].isMember(REFERENCED_SOP_INSTANCE_UID) && | |
| 394 contour[i][CONTOUR_GEOMETRIC_TYPE]["Value"].asString() == "CLOSED_PLANAR") | |
| 395 { | |
| 396 result.append(i); | |
| 397 } | |
| 398 } | |
| 399 | |
| 400 call.GetOutput().AnswerJson(result); | |
| 401 } | |
| 402 } | |
| 403 | |
| 404 | |
| 405 static void GetRtStructuresSingleClosedPlanar(RestApi::GetCall& call) | |
| 406 { | |
| 407 RETRIEVE_CONTEXT(call); | |
| 408 | |
| 409 Json::Value roi, contour; | |
| 410 std::string instanceId; | |
| 411 | |
| 412 if (GetRtStructuresRoi(roi, contour, instanceId, context, | |
| 413 call.GetUriComponent("id", ""), | |
| 414 call.GetUriComponent("roi", ""))) | |
| 415 { | |
| 416 unsigned int index = boost::lexical_cast<unsigned int>(call.GetUriComponent("polygon", "")); | |
| 417 | |
| 418 boost::mutex::scoped_lock lock(context.GetDicomFileMutex()); | |
| 419 ParsedDicomFile& dicom = context.GetDicomFile(instanceId); | |
| 420 | |
| 421 ParsedDicomFile::SequencePath path; | |
| 422 path.push_back(std::make_pair(DicomTag(0x3006, 0x0039 /* ROIContourSequence */), roi["InternalIndex"].asInt())); | |
| 423 path.push_back(std::make_pair(DicomTag(0x3006, 0x0040 /* ContourSequence */), index)); | |
| 424 | |
| 425 Json::Value result; | |
| 426 std::string contourData; | |
| 427 std::string numberOfPoints; | |
| 428 | |
| 429 if (dicom.GetTagValue(contourData, path, DicomTag(0x3006, 0x0050 /* ContourData */)) && | |
| 430 dicom.GetTagValue(numberOfPoints, path, DicomTag(0x3006, 0x0046 /* NumberOfContourPoints */)) && | |
| 431 ContourToPoints(result, contourData) && | |
| 432 result.size() == boost::lexical_cast<unsigned int>(numberOfPoints)) | |
| 433 { | |
| 434 call.GetOutput().AnswerJson(result); | |
| 435 } | |
| 436 } | |
| 437 } | |
| 438 | |
| 439 | |
| 440 static void GetRtStructuresClosedPlanarThickness(RestApi::GetCall& call) | |
| 441 { | |
| 442 RETRIEVE_CONTEXT(call); | |
| 443 | |
| 444 Json::Value roi, contour; | |
| 445 std::string instanceId; | |
| 446 | |
| 447 if (GetRtStructuresRoi(roi, contour, instanceId, context, | |
| 448 call.GetUriComponent("id", ""), | |
| 449 call.GetUriComponent("roi", ""))) | |
| 450 { | |
| 451 unsigned int index = boost::lexical_cast<unsigned int>(call.GetUriComponent("polygon", "")); | |
| 452 | |
| 453 if (contour[index].isMember(CONTOUR_SLAB_THICKNESS)) | |
| 454 { | |
| 455 std::cout <<contour[index][CONTOUR_SLAB_THICKNESS] << std::endl; | |
| 456 call.GetOutput().AnswerBuffer(contour[index][CONTOUR_SLAB_THICKNESS]["Value"].asString(), "text/plain"); | |
| 457 } | |
| 458 else | |
| 459 { | |
| 460 // TODO - No slab thickness is explicitely specified: Should we | |
| 461 // fallback to the thickness of the instance? | |
| 462 } | |
| 463 } | |
| 464 } | |
| 465 | |
| 466 | |
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467 static void GetRtStructuresInstanceOfClosedPlanar(RestApi::GetCall& call) |
| 535 | 468 { |
| 529 | 469 RETRIEVE_CONTEXT(call); |
| 470 | |
| 535 | 471 Json::Value roi, contour; |
| 472 std::string instanceId; | |
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473 |
| 535 | 474 if (GetRtStructuresRoi(roi, contour, instanceId, context, |
| 475 call.GetUriComponent("id", ""), | |
| 476 call.GetUriComponent("roi", ""))) | |
| 477 { | |
| 478 unsigned int index = boost::lexical_cast<unsigned int>(call.GetUriComponent("polygon", "")); | |
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479 |
| 535 | 480 if (contour[index].isMember(CONTOUR_IMAGE_SEQUENCE) && |
| 481 contour[index][CONTOUR_IMAGE_SEQUENCE]["Value"].size() == 1 && | |
| 482 contour[index][CONTOUR_IMAGE_SEQUENCE]["Value"][0].isMember(REFERENCED_SOP_INSTANCE_UID)) | |
| 483 { | |
| 484 std::string uid = contour[index][CONTOUR_IMAGE_SEQUENCE]["Value"][0][REFERENCED_SOP_INSTANCE_UID]["Value"].asString(); | |
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485 |
| 535 | 486 std::list<std::string> instance; |
| 487 context.GetIndex().LookupTagValue(instance, DICOM_TAG_SOP_INSTANCE_UID, uid); | |
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488 |
| 535 | 489 Json::Value result; |
| 490 if (instance.size() == 1 && | |
| 491 context.GetIndex().LookupResource(result, instance.front(), ResourceType_Instance)) | |
| 529 | 492 { |
| 493 call.GetOutput().AnswerJson(result); | |
| 494 } | |
| 495 } | |
| 496 } | |
| 497 } | |
| 498 | |
| 499 | |
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500 static void GetRtStructuresListOfInstances(RestApi::GetCall& call) |
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501 { |
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502 RETRIEVE_CONTEXT(call); |
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503 |
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504 Json::Value roi, contour; |
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505 std::string instanceId; |
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506 |
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507 if (GetRtStructuresRoi(roi, contour, instanceId, context, |
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508 call.GetUriComponent("id", ""), |
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509 call.GetUriComponent("roi", ""))) |
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510 { |
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511 Json::Value result = Json::arrayValue; |
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512 |
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513 for (Json::Value::ArrayIndex i = 0; i < contour.size(); i++) |
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514 { |
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515 if (contour[i].isMember(CONTOUR_IMAGE_SEQUENCE) && |
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516 contour[i][CONTOUR_IMAGE_SEQUENCE]["Value"].size() == 1 && |
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517 contour[i][CONTOUR_IMAGE_SEQUENCE]["Value"][0].isMember(REFERENCED_SOP_INSTANCE_UID)) |
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518 { |
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519 std::string uid = contour[i][CONTOUR_IMAGE_SEQUENCE]["Value"][0][REFERENCED_SOP_INSTANCE_UID]["Value"].asString(); |
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520 |
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521 std::list<std::string> instance; |
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522 context.GetIndex().LookupTagValue(instance, DICOM_TAG_SOP_INSTANCE_UID, uid); |
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523 |
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524 if (instance.size() == 1) |
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525 { |
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526 result.append(instance.front()); |
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527 } |
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528 } |
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529 } |
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530 |
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531 call.GetOutput().AnswerJson(result); |
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532 } |
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533 } |
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534 |
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535 |
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536 |
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537 static void GetRtStructuresClosedPlanarsOfInstance(RestApi::GetCall& call) |
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538 { |
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539 RETRIEVE_CONTEXT(call); |
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540 |
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541 Json::Value roi, contour, instance; |
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542 std::string instanceId; |
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543 |
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544 if (context.GetIndex().LookupResource(instance, call.GetUriComponent("instance", ""), ResourceType_Instance) && |
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545 GetRtStructuresRoi(roi, contour, instanceId, context, |
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546 call.GetUriComponent("id", ""), |
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547 call.GetUriComponent("roi", ""))) |
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548 { |
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549 boost::mutex::scoped_lock lock(context.GetDicomFileMutex()); |
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550 ParsedDicomFile& dicom = context.GetDicomFile(instanceId); |
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551 |
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552 Json::Value result = Json::arrayValue; |
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553 |
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554 for (Json::Value::ArrayIndex i = 0; i < contour.size(); i++) |
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555 { |
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556 if (contour[i].isMember(CONTOUR_DATA) && |
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557 contour[i].isMember(CONTOUR_IMAGE_SEQUENCE) && |
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558 contour[i].isMember(NUMBER_OF_CONTOUR_POINTS) && |
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559 contour[i].isMember(CONTOUR_GEOMETRIC_TYPE) && |
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560 contour[i][CONTOUR_IMAGE_SEQUENCE]["Value"].size() == 1 && |
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561 contour[i][CONTOUR_IMAGE_SEQUENCE]["Value"][0].isMember(REFERENCED_SOP_INSTANCE_UID) && |
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562 contour[i][CONTOUR_GEOMETRIC_TYPE]["Value"].asString() == "CLOSED_PLANAR") |
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563 { |
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564 std::string uid = contour[i][CONTOUR_IMAGE_SEQUENCE]["Value"][0][REFERENCED_SOP_INSTANCE_UID]["Value"].asString(); |
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565 |
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566 if (uid == instance["MainDicomTags"]["SOPInstanceUID"].asString()) |
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567 { |
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568 ParsedDicomFile::SequencePath path; |
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569 path.push_back(std::make_pair(DicomTag(0x3006, 0x0039 /* ROIContourSequence */), roi["InternalIndex"].asInt())); |
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570 path.push_back(std::make_pair(DicomTag(0x3006, 0x0040 /* ContourSequence */), i)); |
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571 |
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572 Json::Value points; |
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573 std::string contourData; |
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574 std::string numberOfPoints; |
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575 |
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576 if (dicom.GetTagValue(contourData, path, DicomTag(0x3006, 0x0050 /* ContourData */)) && |
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577 dicom.GetTagValue(numberOfPoints, path, DicomTag(0x3006, 0x0046 /* NumberOfContourPoints */)) && |
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578 ContourToPoints(points, contourData) && |
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579 points.size() == boost::lexical_cast<unsigned int>(numberOfPoints)) |
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580 { |
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581 result.append(points); |
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582 } |
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583 } |
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584 } |
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585 } |
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586 |
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587 call.GetOutput().AnswerJson(result); |
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588 } |
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589 } |
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590 |
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591 |
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592 |
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593 static void GetRtStructuresPointsOfInstance(RestApi::GetCall& call) |
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594 { |
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595 RETRIEVE_CONTEXT(call); |
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596 |
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597 Json::Value roi, contour, instance; |
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598 std::string instanceId; |
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599 |
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600 if (context.GetIndex().LookupResource(instance, call.GetUriComponent("instance", ""), ResourceType_Instance) && |
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601 GetRtStructuresRoi(roi, contour, instanceId, context, |
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602 call.GetUriComponent("id", ""), |
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603 call.GetUriComponent("roi", ""))) |
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604 { |
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605 Json::Value result = Json::arrayValue; |
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606 |
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607 for (Json::Value::ArrayIndex i = 0; i < contour.size(); i++) |
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608 { |
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609 if (contour[i].isMember(CONTOUR_DATA) && |
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610 contour[i].isMember(CONTOUR_IMAGE_SEQUENCE) && |
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611 contour[i].isMember(CONTOUR_GEOMETRIC_TYPE) && |
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612 contour[i][CONTOUR_IMAGE_SEQUENCE]["Value"].size() == 1 && |
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613 contour[i][CONTOUR_IMAGE_SEQUENCE]["Value"][0].isMember(REFERENCED_SOP_INSTANCE_UID) && |
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614 contour[i][CONTOUR_GEOMETRIC_TYPE]["Value"].asString() == "POINT") |
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615 { |
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616 std::string uid = contour[i][CONTOUR_IMAGE_SEQUENCE]["Value"][0][REFERENCED_SOP_INSTANCE_UID]["Value"].asString(); |
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617 |
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618 if (uid == instance["MainDicomTags"]["SOPInstanceUID"].asString()) |
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619 { |
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620 Json::Value p; |
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621 if (ContourToPoints(p, contour[i][CONTOUR_DATA]["Value"].asString()) && |
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622 p.size() == 1) |
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623 { |
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624 result.append(p[0]); |
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625 } |
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626 } |
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627 } |
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628 } |
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629 |
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630 call.GetOutput().AnswerJson(result); |
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631 } |
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632 } |
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633 |
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634 |
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635 |
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636 |
| 526 | 637 RadiotherapyRestApi::RadiotherapyRestApi(ServerContext& context) : OrthancRestApi(context) |
| 638 { | |
| 639 Register("/series/{id}/rt-structures", GetRtStructuresInfo); | |
| 529 | 640 Register("/series/{id}/rt-structures/roi", GetRtStructuresListOfROIs); |
| 535 | 641 Register("/series/{id}/rt-structures/roi/{roi}/info", GetRtStructuresROI); |
| 642 Register("/series/{id}/rt-structures/roi/{roi}/points", GetRtStructuresROIPoints); | |
| 643 Register("/series/{id}/rt-structures/roi/{roi}/closed-planar", GetRtStructuresListOfClosedPlanars); | |
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538
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644 Register("/series/{id}/rt-structures/roi/{roi}/closed-planar/{polygon}/vertices", GetRtStructuresSingleClosedPlanar); |
| 535 | 645 Register("/series/{id}/rt-structures/roi/{roi}/closed-planar/{polygon}/thickness", GetRtStructuresClosedPlanarThickness); |
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538
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646 Register("/series/{id}/rt-structures/roi/{roi}/closed-planar/{polygon}/instance", GetRtStructuresInstanceOfClosedPlanar); |
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647 Register("/series/{id}/rt-structures/roi/{roi}/instances", GetRtStructuresListOfInstances); |
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648 Register("/series/{id}/rt-structures/roi/{roi}/instances/{instance}/closed-planar", GetRtStructuresClosedPlanarsOfInstance); |
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649 Register("/series/{id}/rt-structures/roi/{roi}/instances/{instance}/points", GetRtStructuresPointsOfInstance); |
| 526 | 650 } |
| 529 | 651 |
| 526 | 652 } |
| 653 | |
| 654 | |
| 655 // curl http://localhost:8042/series/0b9e2bb2-605a59aa-f27c0260-9cc4faf6-9d8bf457/rt-structures | |
| 656 // curl http://localhost:8042/series/ef041e6b-c855e775-f7e0f7fe-dc3c17dc-533cb8c5/rt-structures |