Mercurial > hg > orthanc
annotate OrthancServer/ServerContext.cpp @ 3829:4fde7933e504 transcoding
integration mainline->transcoding
author | Sebastien Jodogne <s.jodogne@gmail.com> |
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date | Fri, 10 Apr 2020 16:36:02 +0200 |
parents | 023b2a9f3aa1 |
children | 5bba4d249422 |
rev | line source |
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224 | 1 /** |
2 * Orthanc - A Lightweight, RESTful DICOM Store | |
1900 | 3 * Copyright (C) 2012-2016 Sebastien Jodogne, Medical Physics |
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4 * Department, University Hospital of Liege, Belgium |
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5 * Copyright (C) 2017-2020 Osimis S.A., Belgium |
224 | 6 * |
7 * This program is free software: you can redistribute it and/or | |
8 * modify it under the terms of the GNU General Public License as | |
9 * published by the Free Software Foundation, either version 3 of the | |
10 * License, or (at your option) any later version. | |
11 * | |
12 * In addition, as a special exception, the copyright holders of this | |
13 * program give permission to link the code of its release with the | |
14 * OpenSSL project's "OpenSSL" library (or with modified versions of it | |
15 * that use the same license as the "OpenSSL" library), and distribute | |
16 * the linked executables. You must obey the GNU General Public License | |
17 * in all respects for all of the code used other than "OpenSSL". If you | |
18 * modify file(s) with this exception, you may extend this exception to | |
19 * your version of the file(s), but you are not obligated to do so. If | |
20 * you do not wish to do so, delete this exception statement from your | |
21 * version. If you delete this exception statement from all source files | |
22 * in the program, then also delete it here. | |
23 * | |
24 * This program is distributed in the hope that it will be useful, but | |
25 * WITHOUT ANY WARRANTY; without even the implied warranty of | |
26 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU | |
27 * General Public License for more details. | |
28 * | |
29 * You should have received a copy of the GNU General Public License | |
30 * along with this program. If not, see <http://www.gnu.org/licenses/>. | |
31 **/ | |
32 | |
33 | |
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34 #include "PrecompiledHeadersServer.h" |
224 | 35 #include "ServerContext.h" |
36 | |
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37 #include "../Core/Cache/SharedArchive.h" |
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38 #include "../Core/DicomParsing/FromDcmtkBridge.h" |
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39 #include "../Core/FileStorage/StorageAccessor.h" |
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40 #include "../Core/HttpServer/FilesystemHttpSender.h" |
1525 | 41 #include "../Core/HttpServer/HttpStreamTranscoder.h" |
3097 | 42 #include "../Core/JobsEngine/SetOfInstancesJob.h" |
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43 #include "../Core/Logging.h" |
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44 #include "../Core/MetricsRegistry.h" |
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45 #include "../Plugins/Engine/OrthancPlugins.h" |
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46 |
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47 #include "OrthancConfiguration.h" |
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48 #include "OrthancRestApi/OrthancRestApi.h" |
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49 #include "Search/DatabaseLookup.h" |
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50 #include "ServerJobs/OrthancJobUnserializer.h" |
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51 #include "ServerToolbox.h" |
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52 #include "StorageCommitmentReports.h" |
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53 |
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54 #include <EmbeddedResources.h> |
794 | 55 #include <dcmtk/dcmdata/dcfilefo.h> |
224 | 56 |
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57 |
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58 |
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59 #define ENABLE_DICOM_CACHE 1 |
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60 |
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61 static const size_t DICOM_CACHE_SIZE = 2; |
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62 |
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63 /** |
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64 * IMPORTANT: We make the assumption that the same instance of |
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65 * FileStorage can be accessed from multiple threads. This seems OK |
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66 * since the filesystem implements the required locking mechanisms, |
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67 * but maybe a read-writer lock on the "FileStorage" could be |
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68 * useful. Conversely, "ServerIndex" already implements mutex-based |
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69 * locking. |
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70 **/ |
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71 |
224 | 72 namespace Orthanc |
73 { | |
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74 void ServerContext::ChangeThread(ServerContext* that, |
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75 unsigned int sleepDelay) |
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76 { |
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77 while (!that->done_) |
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78 { |
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79 std::unique_ptr<IDynamicObject> obj(that->pendingChanges_.Dequeue(sleepDelay)); |
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80 |
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81 if (obj.get() != NULL) |
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82 { |
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83 const ServerIndexChange& change = dynamic_cast<const ServerIndexChange&>(*obj.get()); |
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84 |
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85 boost::recursive_mutex::scoped_lock lock(that->listenersMutex_); |
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86 for (ServerListeners::iterator it = that->listeners_.begin(); |
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87 it != that->listeners_.end(); ++it) |
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88 { |
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89 try |
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90 { |
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91 try |
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92 { |
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93 it->GetListener().SignalChange(change); |
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94 } |
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95 catch (std::bad_alloc&) |
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96 { |
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97 LOG(ERROR) << "Not enough memory while signaling a change"; |
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98 } |
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99 catch (...) |
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100 { |
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101 throw OrthancException(ErrorCode_InternalError); |
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102 } |
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103 } |
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104 catch (OrthancException& e) |
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105 { |
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106 LOG(ERROR) << "Error in the " << it->GetDescription() |
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107 << " callback while signaling a change: " << e.What() |
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108 << " (code " << e.GetErrorCode() << ")"; |
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109 } |
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110 } |
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111 } |
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112 } |
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113 } |
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114 |
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115 |
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116 void ServerContext::SaveJobsThread(ServerContext* that, |
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117 unsigned int sleepDelay) |
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118 { |
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119 static const boost::posix_time::time_duration PERIODICITY = |
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120 boost::posix_time::seconds(10); |
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121 |
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122 boost::posix_time::ptime next = |
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123 boost::posix_time::microsec_clock::universal_time() + PERIODICITY; |
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124 |
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125 while (!that->done_) |
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126 { |
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127 boost::this_thread::sleep(boost::posix_time::milliseconds(sleepDelay)); |
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128 |
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129 if (that->haveJobsChanged_ || |
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130 boost::posix_time::microsec_clock::universal_time() >= next) |
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131 { |
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132 that->haveJobsChanged_ = false; |
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133 that->SaveJobsEngine(); |
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134 next = boost::posix_time::microsec_clock::universal_time() + PERIODICITY; |
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135 } |
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136 } |
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137 } |
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138 |
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139 |
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140 void ServerContext::SignalJobSubmitted(const std::string& jobId) |
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141 { |
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142 haveJobsChanged_ = true; |
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143 mainLua_.SignalJobSubmitted(jobId); |
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144 } |
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145 |
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146 |
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147 void ServerContext::SignalJobSuccess(const std::string& jobId) |
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148 { |
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149 haveJobsChanged_ = true; |
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150 mainLua_.SignalJobSuccess(jobId); |
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151 } |
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152 |
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153 |
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154 void ServerContext::SignalJobFailure(const std::string& jobId) |
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155 { |
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156 haveJobsChanged_ = true; |
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157 mainLua_.SignalJobFailure(jobId); |
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158 } |
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159 |
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160 |
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161 void ServerContext::SetupJobsEngine(bool unitTesting, |
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162 bool loadJobsFromDatabase) |
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163 { |
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164 if (loadJobsFromDatabase) |
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165 { |
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166 std::string serialized; |
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167 if (index_.LookupGlobalProperty(serialized, GlobalProperty_JobsRegistry)) |
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168 { |
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169 LOG(WARNING) << "Reloading the jobs from the last execution of Orthanc"; |
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170 OrthancJobUnserializer unserializer(*this); |
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171 |
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172 try |
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173 { |
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174 jobsEngine_.LoadRegistryFromString(unserializer, serialized); |
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175 } |
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176 catch (OrthancException& e) |
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177 { |
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178 LOG(WARNING) << "Cannot unserialize the jobs engine, starting anyway: " << e.What(); |
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179 } |
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180 } |
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181 else |
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182 { |
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183 LOG(INFO) << "The last execution of Orthanc has archived no job"; |
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184 } |
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185 } |
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186 else |
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187 { |
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188 LOG(INFO) << "Not reloading the jobs from the last execution of Orthanc"; |
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189 } |
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190 |
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191 jobsEngine_.GetRegistry().SetObserver(*this); |
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192 jobsEngine_.Start(); |
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193 isJobsEngineUnserialized_ = true; |
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194 |
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195 saveJobsThread_ = boost::thread(SaveJobsThread, this, (unitTesting ? 20 : 100)); |
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196 } |
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197 |
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198 |
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199 void ServerContext::SaveJobsEngine() |
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200 { |
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201 if (saveJobs_) |
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202 { |
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203 VLOG(1) << "Serializing the content of the jobs engine"; |
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204 |
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205 try |
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206 { |
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207 Json::Value value; |
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208 jobsEngine_.GetRegistry().Serialize(value); |
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209 |
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210 Json::FastWriter writer; |
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211 std::string serialized = writer.write(value); |
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212 |
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213 index_.SetGlobalProperty(GlobalProperty_JobsRegistry, serialized); |
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214 } |
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215 catch (OrthancException& e) |
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216 { |
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217 LOG(ERROR) << "Cannot serialize the jobs engine: " << e.What(); |
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218 } |
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219 } |
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220 } |
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221 |
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222 |
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223 ServerContext::ServerContext(IDatabaseWrapper& database, |
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224 IStorageArea& area, |
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225 bool unitTesting, |
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226 size_t maxCompletedJobs) : |
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227 index_(*this, database, (unitTesting ? 20 : 500)), |
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228 area_(area), |
656 | 229 compressionEnabled_(false), |
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230 storeMD5_(true), |
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231 provider_(*this), |
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232 dicomCache_(provider_, DICOM_CACHE_SIZE), |
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233 mainLua_(*this), |
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234 filterLua_(*this), |
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235 luaListener_(*this), |
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236 jobsEngine_(maxCompletedJobs), |
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237 #if ORTHANC_ENABLE_PLUGINS == 1 |
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238 plugins_(NULL), |
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239 #endif |
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240 done_(false), |
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241 haveJobsChanged_(false), |
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242 isJobsEngineUnserialized_(false), |
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243 metricsRegistry_(new MetricsRegistry), |
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244 isHttpServerSecure_(true), |
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245 isExecuteLuaEnabled_(false), |
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246 overwriteInstances_(false) |
224 | 247 { |
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248 { |
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249 OrthancConfiguration::ReaderLock lock; |
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250 |
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251 queryRetrieveArchive_.reset( |
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252 new SharedArchive(lock.GetConfiguration().GetUnsignedIntegerParameter("QueryRetrieveSize", 100))); |
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253 mediaArchive_.reset( |
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254 new SharedArchive(lock.GetConfiguration().GetUnsignedIntegerParameter("MediaArchiveSize", 1))); |
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255 defaultLocalAet_ = lock.GetConfiguration().GetStringParameter("DicomAet", "ORTHANC"); |
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256 jobsEngine_.SetWorkersCount(lock.GetConfiguration().GetUnsignedIntegerParameter("ConcurrentJobs", 2)); |
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257 saveJobs_ = lock.GetConfiguration().GetBooleanParameter("SaveJobs", true); |
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258 metricsRegistry_->SetEnabled(lock.GetConfiguration().GetBooleanParameter("MetricsEnabled", true)); |
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259 |
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260 // New configuration options in Orthanc 1.5.1 |
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261 findStorageAccessMode_ = StringToFindStorageAccessMode(lock.GetConfiguration().GetStringParameter("StorageAccessOnFind", "Always")); |
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262 limitFindInstances_ = lock.GetConfiguration().GetUnsignedIntegerParameter("LimitFindInstances", 0); |
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263 limitFindResults_ = lock.GetConfiguration().GetUnsignedIntegerParameter("LimitFindResults", 0); |
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264 |
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265 // New configuration option in Orthanc 1.6.0 |
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266 storageCommitmentReports_.reset(new StorageCommitmentReports(lock.GetConfiguration().GetUnsignedIntegerParameter("StorageCommitmentReportsSize", 100))); |
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267 } |
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268 |
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269 jobsEngine_.SetThreadSleep(unitTesting ? 20 : 200); |
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270 |
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271 listeners_.push_back(ServerListener(luaListener_, "Lua")); |
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272 changeThread_ = boost::thread(ChangeThread, this, (unitTesting ? 20 : 100)); |
224 | 273 } |
274 | |
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275 |
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276 |
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277 ServerContext::~ServerContext() |
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278 { |
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279 if (!done_) |
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280 { |
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281 LOG(ERROR) << "INTERNAL ERROR: ServerContext::Stop() should be invoked manually to avoid mess in the destruction order!"; |
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282 Stop(); |
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283 } |
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284 } |
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285 |
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286 |
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287 void ServerContext::Stop() |
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288 { |
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289 if (!done_) |
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290 { |
1459 | 291 { |
292 boost::recursive_mutex::scoped_lock lock(listenersMutex_); | |
293 listeners_.clear(); | |
294 } | |
295 | |
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296 done_ = true; |
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297 |
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298 if (changeThread_.joinable()) |
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299 { |
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300 changeThread_.join(); |
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301 } |
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302 |
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303 if (saveJobsThread_.joinable()) |
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304 { |
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305 saveJobsThread_.join(); |
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306 } |
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307 |
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308 jobsEngine_.GetRegistry().ResetObserver(); |
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309 |
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310 if (isJobsEngineUnserialized_) |
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311 { |
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312 // Avoid losing jobs if the JobsRegistry cannot be unserialized |
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313 SaveJobsEngine(); |
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314 } |
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315 |
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316 // Do not change the order below! |
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317 jobsEngine_.Stop(); |
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318 index_.Stop(); |
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319 } |
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320 } |
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321 |
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322 |
236 | 323 void ServerContext::SetCompressionEnabled(bool enabled) |
324 { | |
325 if (enabled) | |
326 LOG(WARNING) << "Disk compression is enabled"; | |
327 else | |
328 LOG(WARNING) << "Disk compression is disabled"; | |
329 | |
330 compressionEnabled_ = enabled; | |
331 } | |
332 | |
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333 |
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334 void ServerContext::RemoveFile(const std::string& fileUuid, |
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335 FileContentType type) |
227
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336 { |
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337 StorageAccessor accessor(area_, GetMetricsRegistry()); |
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338 accessor.Remove(fileUuid, type); |
227
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339 } |
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340 |
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341 |
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342 StoreStatus ServerContext::Store(std::string& resultPublicId, |
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343 DicomInstanceToStore& dicom, |
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344 StoreInstanceMode mode) |
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345 { |
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346 bool overwrite; |
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347 switch (mode) |
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348 { |
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349 case StoreInstanceMode_Default: |
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350 overwrite = overwriteInstances_; |
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351 break; |
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352 |
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353 case StoreInstanceMode_OverwriteDuplicate: |
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354 overwrite = true; |
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355 break; |
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356 |
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357 case StoreInstanceMode_IgnoreDuplicate: |
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358 overwrite = false; |
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359 break; |
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360 |
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361 default: |
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362 throw OrthancException(ErrorCode_ParameterOutOfRange); |
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363 } |
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364 |
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365 try |
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366 { |
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367 MetricsRegistry::Timer timer(GetMetricsRegistry(), "orthanc_store_dicom_duration_ms"); |
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368 StorageAccessor accessor(area_, GetMetricsRegistry()); |
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369 |
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370 resultPublicId = dicom.GetHasher().HashInstance(); |
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371 |
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372 Json::Value simplifiedTags; |
2120 | 373 ServerToolbox::SimplifyTags(simplifiedTags, dicom.GetJson(), DicomToJsonFormat_Human); |
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374 |
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375 // Test if the instance must be filtered out |
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376 bool accepted = true; |
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377 |
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378 { |
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379 boost::recursive_mutex::scoped_lock lock(listenersMutex_); |
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380 |
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381 for (ServerListeners::iterator it = listeners_.begin(); it != listeners_.end(); ++it) |
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382 { |
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383 try |
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384 { |
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385 if (!it->GetListener().FilterIncomingInstance(dicom, simplifiedTags)) |
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386 { |
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387 accepted = false; |
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388 break; |
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389 } |
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390 } |
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391 catch (OrthancException& e) |
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392 { |
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393 LOG(ERROR) << "Error in the " << it->GetDescription() |
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394 << " callback while receiving an instance: " << e.What() |
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395 << " (code " << e.GetErrorCode() << ")"; |
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396 throw; |
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397 } |
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398 } |
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399 } |
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400 |
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401 if (!accepted) |
1004
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DicomInstanceToStore
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|
402 { |
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403 LOG(INFO) << "An incoming instance has been discarded by the filter"; |
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DicomInstanceToStore
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404 return StoreStatus_FilteredOut; |
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|
405 } |
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|
406 |
2825
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New configuration option "OverwriteInstances" to choose how duplicate SOPInstanceUID are handled
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407 { |
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New configuration option "OverwriteInstances" to choose how duplicate SOPInstanceUID are handled
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|
408 // Remove the file from the DicomCache (useful if |
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New configuration option "OverwriteInstances" to choose how duplicate SOPInstanceUID are handled
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409 // "OverwriteInstances" is set to "true") |
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New configuration option "OverwriteInstances" to choose how duplicate SOPInstanceUID are handled
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diff
changeset
|
410 boost::mutex::scoped_lock lock(dicomCacheMutex_); |
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New configuration option "OverwriteInstances" to choose how duplicate SOPInstanceUID are handled
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diff
changeset
|
411 dicomCache_.Invalidate(resultPublicId); |
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New configuration option "OverwriteInstances" to choose how duplicate SOPInstanceUID are handled
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diff
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|
412 } |
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New configuration option "OverwriteInstances" to choose how duplicate SOPInstanceUID are handled
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413 |
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414 // TODO Should we use "gzip" instead? |
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refactoring and simplification of StorageAccessor
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|
415 CompressionType compression = (compressionEnabled_ ? CompressionType_ZlibWithSize : CompressionType_None); |
1004
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DicomInstanceToStore
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|
416 |
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417 FileInfo dicomInfo = accessor.Write(dicom.GetBufferData(), dicom.GetBufferSize(), |
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refactoring and simplification of StorageAccessor
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|
418 FileContentType_Dicom, compression, storeMD5_); |
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419 FileInfo jsonInfo = accessor.Write(dicom.GetJson().toStyledString(), |
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refactoring and simplification of StorageAccessor
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changeset
|
420 FileContentType_DicomAsJson, compression, storeMD5_); |
1004
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DicomInstanceToStore
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|
421 |
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DicomInstanceToStore
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diff
changeset
|
422 ServerIndex::Attachments attachments; |
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DicomInstanceToStore
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|
423 attachments.push_back(dicomInfo); |
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DicomInstanceToStore
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|
424 attachments.push_back(jsonInfo); |
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DicomInstanceToStore
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diff
changeset
|
425 |
1067
ace99e272203
access metadata in plugins
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diff
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426 typedef std::map<MetadataType, std::string> InstanceMetadata; |
ace99e272203
access metadata in plugins
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427 InstanceMetadata instanceMetadata; |
3813
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moving SetOverwriteInstances from ServerIndex to ServerContext
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428 StoreStatus status = index_.Store( |
3814
023b2a9f3aa1
new enum: StoreInstanceMode
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diff
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|
429 instanceMetadata, dicom, attachments, overwrite); |
1004
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DicomInstanceToStore
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|
430 |
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431 // Only keep the metadata for the "instance" level |
1067
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access metadata in plugins
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432 dicom.GetMetadata().clear(); |
ace99e272203
access metadata in plugins
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|
433 |
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access metadata in plugins
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434 for (InstanceMetadata::const_iterator it = instanceMetadata.begin(); |
1304 | 435 it != instanceMetadata.end(); ++it) |
1067
ace99e272203
access metadata in plugins
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|
436 { |
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access metadata in plugins
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diff
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|
437 dicom.GetMetadata().insert(std::make_pair(std::make_pair(ResourceType_Instance, it->first), |
ace99e272203
access metadata in plugins
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changeset
|
438 it->second)); |
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access metadata in plugins
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diff
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|
439 } |
ace99e272203
access metadata in plugins
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diff
changeset
|
440 |
1004
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DicomInstanceToStore
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diff
changeset
|
441 if (status != StoreStatus_Success) |
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DicomInstanceToStore
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diff
changeset
|
442 { |
1549
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refactoring and simplification of StorageAccessor
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443 accessor.Remove(dicomInfo); |
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refactoring and simplification of StorageAccessor
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|
444 accessor.Remove(jsonInfo); |
1004
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DicomInstanceToStore
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1002
diff
changeset
|
445 } |
a226e0959d8b
DicomInstanceToStore
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parents:
1002
diff
changeset
|
446 |
a226e0959d8b
DicomInstanceToStore
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parents:
1002
diff
changeset
|
447 switch (status) |
a226e0959d8b
DicomInstanceToStore
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1002
diff
changeset
|
448 { |
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DicomInstanceToStore
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1002
diff
changeset
|
449 case StoreStatus_Success: |
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DicomInstanceToStore
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1002
diff
changeset
|
450 LOG(INFO) << "New instance stored"; |
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DicomInstanceToStore
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diff
changeset
|
451 break; |
a226e0959d8b
DicomInstanceToStore
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1002
diff
changeset
|
452 |
a226e0959d8b
DicomInstanceToStore
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1002
diff
changeset
|
453 case StoreStatus_AlreadyStored: |
a226e0959d8b
DicomInstanceToStore
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1002
diff
changeset
|
454 LOG(INFO) << "Already stored"; |
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DicomInstanceToStore
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diff
changeset
|
455 break; |
a226e0959d8b
DicomInstanceToStore
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parents:
1002
diff
changeset
|
456 |
a226e0959d8b
DicomInstanceToStore
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parents:
1002
diff
changeset
|
457 case StoreStatus_Failure: |
a226e0959d8b
DicomInstanceToStore
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parents:
1002
diff
changeset
|
458 LOG(ERROR) << "Store failure"; |
a226e0959d8b
DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1002
diff
changeset
|
459 break; |
a226e0959d8b
DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1002
diff
changeset
|
460 |
a226e0959d8b
DicomInstanceToStore
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parents:
1002
diff
changeset
|
461 default: |
a226e0959d8b
DicomInstanceToStore
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parents:
1002
diff
changeset
|
462 // This should never happen |
a226e0959d8b
DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1002
diff
changeset
|
463 break; |
a226e0959d8b
DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1002
diff
changeset
|
464 } |
a226e0959d8b
DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1002
diff
changeset
|
465 |
a226e0959d8b
DicomInstanceToStore
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parents:
1002
diff
changeset
|
466 if (status == StoreStatus_Success || |
a226e0959d8b
DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1002
diff
changeset
|
467 status == StoreStatus_AlreadyStored) |
a226e0959d8b
DicomInstanceToStore
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1002
diff
changeset
|
468 { |
1456
68827c07e683
fix recursive calls with Lua
Sebastien Jodogne <s.jodogne@gmail.com>
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1453
diff
changeset
|
469 boost::recursive_mutex::scoped_lock lock(listenersMutex_); |
1453
c0bdc47165ef
code to warn about possible threading problems
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parents:
1447
diff
changeset
|
470 |
1433
461e7554bff7
refactoring: LuaScripting
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1427
diff
changeset
|
471 for (ServerListeners::iterator it = listeners_.begin(); it != listeners_.end(); ++it) |
1066
bb82e5e818e9
OnStoredInstance callback in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
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1065
diff
changeset
|
472 { |
bb82e5e818e9
OnStoredInstance callback in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
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1065
diff
changeset
|
473 try |
bb82e5e818e9
OnStoredInstance callback in plugins
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1065
diff
changeset
|
474 { |
1574
0c29ebe80ac9
give access to full request origin in ReceivedInstanceFilter (Lua)
Sebastien Jodogne <s.jodogne@gmail.com>
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1550
diff
changeset
|
475 it->GetListener().SignalStoredInstance(resultPublicId, dicom, simplifiedTags); |
1066
bb82e5e818e9
OnStoredInstance callback in plugins
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1065
diff
changeset
|
476 } |
bb82e5e818e9
OnStoredInstance callback in plugins
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parents:
1065
diff
changeset
|
477 catch (OrthancException& e) |
bb82e5e818e9
OnStoredInstance callback in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1065
diff
changeset
|
478 { |
1433
461e7554bff7
refactoring: LuaScripting
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1427
diff
changeset
|
479 LOG(ERROR) << "Error in the " << it->GetDescription() |
2135
cadfe0a2a393
fix in the sample basic plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2134
diff
changeset
|
480 << " callback while receiving an instance: " << e.What() |
cadfe0a2a393
fix in the sample basic plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2134
diff
changeset
|
481 << " (code " << e.GetErrorCode() << ")"; |
1066
bb82e5e818e9
OnStoredInstance callback in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1065
diff
changeset
|
482 } |
bb82e5e818e9
OnStoredInstance callback in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1065
diff
changeset
|
483 } |
1004
a226e0959d8b
DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1002
diff
changeset
|
484 } |
a226e0959d8b
DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1002
diff
changeset
|
485 |
a226e0959d8b
DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1002
diff
changeset
|
486 return status; |
a226e0959d8b
DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1002
diff
changeset
|
487 } |
a226e0959d8b
DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1002
diff
changeset
|
488 catch (OrthancException& e) |
a226e0959d8b
DicomInstanceToStore
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parents:
1002
diff
changeset
|
489 { |
a226e0959d8b
DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1002
diff
changeset
|
490 if (e.GetErrorCode() == ErrorCode_InexistentTag) |
a226e0959d8b
DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1002
diff
changeset
|
491 { |
2380
96b3ec054b69
reorganization in macros
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2304
diff
changeset
|
492 dicom.GetSummary().LogMissingTagsForStore(); |
1004
a226e0959d8b
DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1002
diff
changeset
|
493 } |
a226e0959d8b
DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1002
diff
changeset
|
494 |
a226e0959d8b
DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1002
diff
changeset
|
495 throw; |
a226e0959d8b
DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1002
diff
changeset
|
496 } |
a226e0959d8b
DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1002
diff
changeset
|
497 } |
a226e0959d8b
DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1002
diff
changeset
|
498 |
a226e0959d8b
DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1002
diff
changeset
|
499 |
1146
200fcac0deb4
optimization for access to attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1145
diff
changeset
|
500 void ServerContext::AnswerAttachment(RestApiOutput& output, |
1700
f5ddbd9239dd
New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1632
diff
changeset
|
501 const std::string& resourceId, |
1146
200fcac0deb4
optimization for access to attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1145
diff
changeset
|
502 FileContentType content) |
226
8a26a8e85edf
refactoring to read files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
224
diff
changeset
|
503 { |
232
5368bbe813cf
refactoring of attachments
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504 FileInfo attachment; |
1700
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505 if (!index_.LookupAttachment(attachment, resourceId, content)) |
232
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refactoring of attachments
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506 { |
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507 throw OrthancException(ErrorCode_UnknownResource); |
236 | 508 } |
226
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509 |
3175
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new metrics: orthanc_store_dicom_duration_ms, orthanc_storage_[create|read|remove]_duration_ms
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510 StorageAccessor accessor(area_, GetMetricsRegistry()); |
1772
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MIME content type can be associated to custom attachments (cf. "UserContentType")
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511 accessor.AnswerFile(output, attachment, GetFileContentMime(content)); |
226
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512 } |
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diff
changeset
|
513 |
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514 |
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515 void ServerContext::ChangeAttachmentCompression(const std::string& resourceId, |
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516 FileContentType attachmentType, |
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517 CompressionType compression) |
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518 { |
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519 LOG(INFO) << "Changing compression type for attachment " |
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520 << EnumerationToString(attachmentType) |
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New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
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|
521 << " of resource " << resourceId << " to " |
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522 << compression; |
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New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
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|
523 |
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524 FileInfo attachment; |
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525 if (!index_.LookupAttachment(attachment, resourceId, attachmentType)) |
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New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
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526 { |
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527 throw OrthancException(ErrorCode_UnknownResource); |
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|
528 } |
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529 |
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|
530 if (attachment.GetCompressionType() == compression) |
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diff
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531 { |
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New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
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532 // Nothing to do |
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New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
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|
533 return; |
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New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
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534 } |
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|
535 |
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New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
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|
536 std::string content; |
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|
537 |
3175
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new metrics: orthanc_store_dicom_duration_ms, orthanc_storage_[create|read|remove]_duration_ms
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|
538 StorageAccessor accessor(area_, GetMetricsRegistry()); |
1700
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539 accessor.Read(content, attachment); |
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New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
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540 |
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diff
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541 FileInfo modified = accessor.Write(content.empty() ? NULL : content.c_str(), |
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New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
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|
542 content.size(), attachmentType, compression, storeMD5_); |
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543 |
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544 try |
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New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
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diff
changeset
|
545 { |
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546 StoreStatus status = index_.AddAttachment(modified, resourceId); |
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New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
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diff
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|
547 if (status != StoreStatus_Success) |
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548 { |
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549 accessor.Remove(modified); |
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550 throw OrthancException(ErrorCode_Database); |
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551 } |
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New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
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552 } |
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New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
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553 catch (OrthancException&) |
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New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
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|
554 { |
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555 accessor.Remove(modified); |
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New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
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|
556 throw; |
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|
557 } |
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New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
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diff
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|
558 } |
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New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
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diff
changeset
|
559 |
f5ddbd9239dd
New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
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diff
changeset
|
560 |
2409
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diff
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561 void ServerContext::ReadDicomAsJsonInternal(std::string& result, |
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ignore-length argument if retrieving DICOM tags
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diff
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|
562 const std::string& instancePublicId) |
2127 | 563 { |
2128
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Possibility to DELETE "dicom-as-json" attachments to reconstruct them
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diff
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|
564 FileInfo attachment; |
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Possibility to DELETE "dicom-as-json" attachments to reconstruct them
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2127
diff
changeset
|
565 if (index_.LookupAttachment(attachment, instancePublicId, FileContentType_DicomAsJson)) |
9329ba17a069
Possibility to DELETE "dicom-as-json" attachments to reconstruct them
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diff
changeset
|
566 { |
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Possibility to DELETE "dicom-as-json" attachments to reconstruct them
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diff
changeset
|
567 ReadAttachment(result, attachment); |
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Possibility to DELETE "dicom-as-json" attachments to reconstruct them
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2127
diff
changeset
|
568 } |
2409
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ignore-length argument if retrieving DICOM tags
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diff
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|
569 else |
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diff
changeset
|
570 { |
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ignore-length argument if retrieving DICOM tags
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changeset
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571 // The "DICOM as JSON" summary is not available from the Orthanc |
e4045b3c9772
ignore-length argument if retrieving DICOM tags
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572 // store (most probably deleted), reconstruct it from the DICOM file |
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ignore-length argument if retrieving DICOM tags
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diff
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|
573 std::string dicom; |
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diff
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574 ReadDicom(dicom, instancePublicId); |
2128
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diff
changeset
|
575 |
2409
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ignore-length argument if retrieving DICOM tags
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diff
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576 LOG(INFO) << "Reconstructing the missing DICOM-as-JSON summary for instance: " |
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ignore-length argument if retrieving DICOM tags
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577 << instancePublicId; |
2128
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diff
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|
578 |
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ignore-length argument if retrieving DICOM tags
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changeset
|
579 ParsedDicomFile parsed(dicom); |
2128
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diff
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|
580 |
2409
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ignore-length argument if retrieving DICOM tags
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diff
changeset
|
581 Json::Value summary; |
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ignore-length argument if retrieving DICOM tags
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diff
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|
582 parsed.DatasetToJson(summary); |
e4045b3c9772
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diff
changeset
|
583 |
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|
584 result = summary.toStyledString(); |
2128
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diff
changeset
|
585 |
2409
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diff
changeset
|
586 if (!AddAttachment(instancePublicId, FileContentType_DicomAsJson, |
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|
587 result.c_str(), result.size())) |
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ignore-length argument if retrieving DICOM tags
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diff
changeset
|
588 { |
2956 | 589 throw OrthancException(ErrorCode_InternalError, |
590 "Cannot associate the DICOM-as-JSON summary to instance: " + instancePublicId); | |
2409
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ignore-length argument if retrieving DICOM tags
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diff
changeset
|
591 } |
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ignore-length argument if retrieving DICOM tags
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diff
changeset
|
592 } |
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diff
changeset
|
593 } |
e4045b3c9772
ignore-length argument if retrieving DICOM tags
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diff
changeset
|
594 |
2128
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diff
changeset
|
595 |
2409
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ignore-length argument if retrieving DICOM tags
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diff
changeset
|
596 void ServerContext::ReadDicomAsJson(std::string& result, |
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ignore-length argument if retrieving DICOM tags
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diff
changeset
|
597 const std::string& instancePublicId, |
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diff
changeset
|
598 const std::set<DicomTag>& ignoreTagLength) |
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ignore-length argument if retrieving DICOM tags
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diff
changeset
|
599 { |
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ignore-length argument if retrieving DICOM tags
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diff
changeset
|
600 if (ignoreTagLength.empty()) |
2128
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2127
diff
changeset
|
601 { |
2409
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ignore-length argument if retrieving DICOM tags
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diff
changeset
|
602 ReadDicomAsJsonInternal(result, instancePublicId); |
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ignore-length argument if retrieving DICOM tags
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diff
changeset
|
603 } |
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ignore-length argument if retrieving DICOM tags
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diff
changeset
|
604 else |
e4045b3c9772
ignore-length argument if retrieving DICOM tags
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diff
changeset
|
605 { |
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ignore-length argument if retrieving DICOM tags
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diff
changeset
|
606 Json::Value tmp; |
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ignore-length argument if retrieving DICOM tags
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diff
changeset
|
607 ReadDicomAsJson(tmp, instancePublicId, ignoreTagLength); |
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ignore-length argument if retrieving DICOM tags
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diff
changeset
|
608 result = tmp.toStyledString(); |
2128
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diff
changeset
|
609 } |
2127 | 610 } |
611 | |
612 | |
2124 | 613 void ServerContext::ReadDicomAsJson(Json::Value& result, |
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614 const std::string& instancePublicId, |
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615 const std::set<DicomTag>& ignoreTagLength) |
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616 { |
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617 if (ignoreTagLength.empty()) |
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618 { |
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619 std::string tmp; |
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620 ReadDicomAsJsonInternal(tmp, instancePublicId); |
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621 |
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622 Json::Reader reader; |
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623 if (!reader.parse(tmp, result)) |
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624 { |
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625 throw OrthancException(ErrorCode_CorruptedFile); |
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626 } |
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627 } |
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628 else |
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629 { |
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630 // The "DicomAsJson" attachment might have stored some tags as |
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631 // "too long". We are forced to re-parse the DICOM file. |
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632 std::string dicom; |
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633 ReadDicom(dicom, instancePublicId); |
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634 |
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635 ParsedDicomFile parsed(dicom); |
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636 parsed.DatasetToJson(result, ignoreTagLength); |
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637 } |
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638 } |
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639 |
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640 |
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641 void ServerContext::ReadAttachment(std::string& result, |
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642 const std::string& instancePublicId, |
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643 FileContentType content, |
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644 bool uncompressIfNeeded) |
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645 { |
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646 FileInfo attachment; |
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647 if (!index_.LookupAttachment(attachment, instancePublicId, content)) |
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648 { |
2956 | 649 throw OrthancException(ErrorCode_InternalError, |
650 "Unable to read attachment " + EnumerationToString(content) + | |
651 " of instance " + instancePublicId); | |
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652 } |
1550 | 653 |
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654 assert(attachment.GetContentType() == content); |
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655 |
1550 | 656 if (uncompressIfNeeded) |
657 { | |
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658 ReadAttachment(result, attachment); |
1550 | 659 } |
660 else | |
661 { | |
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662 // Do not uncompress the content of the storage area, return the |
1550 | 663 // raw data |
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664 StorageAccessor accessor(area_, GetMetricsRegistry()); |
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665 accessor.ReadRaw(result, attachment); |
1550 | 666 } |
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667 } |
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668 |
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669 |
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670 void ServerContext::ReadAttachment(std::string& result, |
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671 const FileInfo& attachment) |
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672 { |
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673 // This will decompress the attachment |
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674 StorageAccessor accessor(area_, GetMetricsRegistry()); |
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675 accessor.Read(result, attachment); |
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676 } |
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677 |
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678 |
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679 IDynamicObject* ServerContext::DicomCacheProvider::Provide(const std::string& instancePublicId) |
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680 { |
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681 std::string content; |
2124 | 682 context_.ReadDicom(content, instancePublicId); |
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683 return new ParsedDicomFile(content); |
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684 } |
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685 |
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686 |
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687 ServerContext::DicomCacheLocker::DicomCacheLocker(ServerContext& that, |
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688 const std::string& instancePublicId) : |
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689 that_(that), |
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690 lock_(that_.dicomCacheMutex_) |
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691 { |
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692 #if ENABLE_DICOM_CACHE == 0 |
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693 static std::unique_ptr<IDynamicObject> p; |
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694 p.reset(provider_.Provide(instancePublicId)); |
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695 dicom_ = dynamic_cast<ParsedDicomFile*>(p.get()); |
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696 #else |
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697 dicom_ = &dynamic_cast<ParsedDicomFile&>(that_.dicomCache_.Access(instancePublicId)); |
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698 #endif |
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699 } |
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700 |
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701 |
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702 ServerContext::DicomCacheLocker::~DicomCacheLocker() |
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703 { |
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704 } |
304 | 705 |
706 | |
695
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707 void ServerContext::SetStoreMD5ForAttachments(bool storeMD5) |
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708 { |
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709 LOG(INFO) << "Storing MD5 for attachments: " << (storeMD5 ? "yes" : "no"); |
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710 storeMD5_ = storeMD5; |
695
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711 } |
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712 |
699
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713 |
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714 bool ServerContext::AddAttachment(const std::string& resourceId, |
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715 FileContentType attachmentType, |
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716 const void* data, |
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717 size_t size) |
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718 { |
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719 LOG(INFO) << "Adding attachment " << EnumerationToString(attachmentType) << " to resource " << resourceId; |
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720 |
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721 // TODO Should we use "gzip" instead? |
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722 CompressionType compression = (compressionEnabled_ ? CompressionType_ZlibWithSize : CompressionType_None); |
699
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723 |
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724 StorageAccessor accessor(area_, GetMetricsRegistry()); |
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725 FileInfo attachment = accessor.Write(data, size, attachmentType, compression, storeMD5_); |
699
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726 |
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727 StoreStatus status = index_.AddAttachment(attachment, resourceId); |
699
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728 if (status != StoreStatus_Success) |
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729 { |
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730 accessor.Remove(attachment); |
699
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731 return false; |
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732 } |
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733 else |
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734 { |
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735 return true; |
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add attachments to resources
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parents:
697
diff
changeset
|
736 } |
2929e17f8447
add attachments to resources
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
697
diff
changeset
|
737 } |
1145
0479d02c6778
Plugins can retrieve the path to Orthanc and to its configuration file
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1134
diff
changeset
|
738 |
0479d02c6778
Plugins can retrieve the path to Orthanc and to its configuration file
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1134
diff
changeset
|
739 |
0479d02c6778
Plugins can retrieve the path to Orthanc and to its configuration file
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1134
diff
changeset
|
740 bool ServerContext::DeleteResource(Json::Value& target, |
0479d02c6778
Plugins can retrieve the path to Orthanc and to its configuration file
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1134
diff
changeset
|
741 const std::string& uuid, |
0479d02c6778
Plugins can retrieve the path to Orthanc and to its configuration file
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1134
diff
changeset
|
742 ResourceType expectedType) |
0479d02c6778
Plugins can retrieve the path to Orthanc and to its configuration file
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1134
diff
changeset
|
743 { |
2507 | 744 if (expectedType == ResourceType_Instance) |
745 { | |
746 // remove the file from the DicomCache | |
747 boost::mutex::scoped_lock lock(dicomCacheMutex_); | |
748 dicomCache_.Invalidate(uuid); | |
749 } | |
750 | |
1145
0479d02c6778
Plugins can retrieve the path to Orthanc and to its configuration file
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1134
diff
changeset
|
751 return index_.DeleteResource(target, uuid, expectedType); |
0479d02c6778
Plugins can retrieve the path to Orthanc and to its configuration file
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1134
diff
changeset
|
752 } |
1189
6b9b02a16e99
NewChildInstance change type
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1165
diff
changeset
|
753 |
6b9b02a16e99
NewChildInstance change type
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1165
diff
changeset
|
754 |
1198 | 755 void ServerContext::SignalChange(const ServerIndexChange& change) |
1189
6b9b02a16e99
NewChildInstance change type
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1165
diff
changeset
|
756 { |
1436
0a3e3be59094
uncoupling of SignalChange for Lua scripts
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1434
diff
changeset
|
757 pendingChanges_.Enqueue(change.Clone()); |
1189
6b9b02a16e99
NewChildInstance change type
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1165
diff
changeset
|
758 } |
1232
f1c01451a8ee
Introspection of plugins, Plugins can extend Orthanc Explorer with custom JavaScript
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1198
diff
changeset
|
759 |
f1c01451a8ee
Introspection of plugins, Plugins can extend Orthanc Explorer with custom JavaScript
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1198
diff
changeset
|
760 |
2136
dd609a99d39a
uniformization of the macro naming
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2135
diff
changeset
|
761 #if ORTHANC_ENABLE_PLUGINS == 1 |
1434
f9cd40166269
refactoring of OrthancPlugins, improvement in ServeFolders
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1433
diff
changeset
|
762 void ServerContext::SetPlugins(OrthancPlugins& plugins) |
1232
f1c01451a8ee
Introspection of plugins, Plugins can extend Orthanc Explorer with custom JavaScript
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1198
diff
changeset
|
763 { |
1459 | 764 boost::recursive_mutex::scoped_lock lock(listenersMutex_); |
765 | |
1434
f9cd40166269
refactoring of OrthancPlugins, improvement in ServeFolders
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1433
diff
changeset
|
766 plugins_ = &plugins; |
f9cd40166269
refactoring of OrthancPlugins, improvement in ServeFolders
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1433
diff
changeset
|
767 |
f9cd40166269
refactoring of OrthancPlugins, improvement in ServeFolders
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1433
diff
changeset
|
768 // TODO REFACTOR THIS |
f9cd40166269
refactoring of OrthancPlugins, improvement in ServeFolders
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1433
diff
changeset
|
769 listeners_.clear(); |
2738
3a55b77339ff
fix deadlock in Lua scripts
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2716
diff
changeset
|
770 listeners_.push_back(ServerListener(luaListener_, "Lua")); |
1434
f9cd40166269
refactoring of OrthancPlugins, improvement in ServeFolders
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1433
diff
changeset
|
771 listeners_.push_back(ServerListener(plugins, "plugin")); |
1232
f1c01451a8ee
Introspection of plugins, Plugins can extend Orthanc Explorer with custom JavaScript
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1198
diff
changeset
|
772 } |
f1c01451a8ee
Introspection of plugins, Plugins can extend Orthanc Explorer with custom JavaScript
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1198
diff
changeset
|
773 |
f1c01451a8ee
Introspection of plugins, Plugins can extend Orthanc Explorer with custom JavaScript
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1198
diff
changeset
|
774 |
1434
f9cd40166269
refactoring of OrthancPlugins, improvement in ServeFolders
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1433
diff
changeset
|
775 void ServerContext::ResetPlugins() |
1232
f1c01451a8ee
Introspection of plugins, Plugins can extend Orthanc Explorer with custom JavaScript
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1198
diff
changeset
|
776 { |
1459 | 777 boost::recursive_mutex::scoped_lock lock(listenersMutex_); |
778 | |
1434
f9cd40166269
refactoring of OrthancPlugins, improvement in ServeFolders
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1433
diff
changeset
|
779 plugins_ = NULL; |
f9cd40166269
refactoring of OrthancPlugins, improvement in ServeFolders
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1433
diff
changeset
|
780 |
f9cd40166269
refactoring of OrthancPlugins, improvement in ServeFolders
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1433
diff
changeset
|
781 // TODO REFACTOR THIS |
f9cd40166269
refactoring of OrthancPlugins, improvement in ServeFolders
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1433
diff
changeset
|
782 listeners_.clear(); |
2738
3a55b77339ff
fix deadlock in Lua scripts
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2716
diff
changeset
|
783 listeners_.push_back(ServerListener(luaListener_, "Lua")); |
1232
f1c01451a8ee
Introspection of plugins, Plugins can extend Orthanc Explorer with custom JavaScript
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1198
diff
changeset
|
784 } |
f1c01451a8ee
Introspection of plugins, Plugins can extend Orthanc Explorer with custom JavaScript
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1198
diff
changeset
|
785 |
f1c01451a8ee
Introspection of plugins, Plugins can extend Orthanc Explorer with custom JavaScript
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1198
diff
changeset
|
786 |
1434
f9cd40166269
refactoring of OrthancPlugins, improvement in ServeFolders
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1433
diff
changeset
|
787 const OrthancPlugins& ServerContext::GetPlugins() const |
1232
f1c01451a8ee
Introspection of plugins, Plugins can extend Orthanc Explorer with custom JavaScript
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1198
diff
changeset
|
788 { |
f1c01451a8ee
Introspection of plugins, Plugins can extend Orthanc Explorer with custom JavaScript
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1198
diff
changeset
|
789 if (HasPlugins()) |
f1c01451a8ee
Introspection of plugins, Plugins can extend Orthanc Explorer with custom JavaScript
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1198
diff
changeset
|
790 { |
f1c01451a8ee
Introspection of plugins, Plugins can extend Orthanc Explorer with custom JavaScript
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1198
diff
changeset
|
791 return *plugins_; |
f1c01451a8ee
Introspection of plugins, Plugins can extend Orthanc Explorer with custom JavaScript
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1198
diff
changeset
|
792 } |
f1c01451a8ee
Introspection of plugins, Plugins can extend Orthanc Explorer with custom JavaScript
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1198
diff
changeset
|
793 else |
f1c01451a8ee
Introspection of plugins, Plugins can extend Orthanc Explorer with custom JavaScript
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1198
diff
changeset
|
794 { |
f1c01451a8ee
Introspection of plugins, Plugins can extend Orthanc Explorer with custom JavaScript
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1198
diff
changeset
|
795 throw OrthancException(ErrorCode_InternalError); |
f1c01451a8ee
Introspection of plugins, Plugins can extend Orthanc Explorer with custom JavaScript
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1198
diff
changeset
|
796 } |
f1c01451a8ee
Introspection of plugins, Plugins can extend Orthanc Explorer with custom JavaScript
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1198
diff
changeset
|
797 } |
1632
eb8fbcf008b5
fix build with plugins disabled
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1582
diff
changeset
|
798 |
1741
06addfcd1d4c
OrthancStarted and OrthancStopped events in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1701
diff
changeset
|
799 OrthancPlugins& ServerContext::GetPlugins() |
06addfcd1d4c
OrthancStarted and OrthancStopped events in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1701
diff
changeset
|
800 { |
06addfcd1d4c
OrthancStarted and OrthancStopped events in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1701
diff
changeset
|
801 if (HasPlugins()) |
06addfcd1d4c
OrthancStarted and OrthancStopped events in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1701
diff
changeset
|
802 { |
06addfcd1d4c
OrthancStarted and OrthancStopped events in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1701
diff
changeset
|
803 return *plugins_; |
06addfcd1d4c
OrthancStarted and OrthancStopped events in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1701
diff
changeset
|
804 } |
06addfcd1d4c
OrthancStarted and OrthancStopped events in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1701
diff
changeset
|
805 else |
06addfcd1d4c
OrthancStarted and OrthancStopped events in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1701
diff
changeset
|
806 { |
06addfcd1d4c
OrthancStarted and OrthancStopped events in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1701
diff
changeset
|
807 throw OrthancException(ErrorCode_InternalError); |
06addfcd1d4c
OrthancStarted and OrthancStopped events in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1701
diff
changeset
|
808 } |
06addfcd1d4c
OrthancStarted and OrthancStopped events in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1701
diff
changeset
|
809 } |
06addfcd1d4c
OrthancStarted and OrthancStopped events in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1701
diff
changeset
|
810 |
1632
eb8fbcf008b5
fix build with plugins disabled
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1582
diff
changeset
|
811 #endif |
eb8fbcf008b5
fix build with plugins disabled
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1582
diff
changeset
|
812 |
eb8fbcf008b5
fix build with plugins disabled
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1582
diff
changeset
|
813 |
eb8fbcf008b5
fix build with plugins disabled
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1582
diff
changeset
|
814 bool ServerContext::HasPlugins() const |
eb8fbcf008b5
fix build with plugins disabled
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1582
diff
changeset
|
815 { |
2136
dd609a99d39a
uniformization of the macro naming
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2135
diff
changeset
|
816 #if ORTHANC_ENABLE_PLUGINS == 1 |
1632
eb8fbcf008b5
fix build with plugins disabled
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1582
diff
changeset
|
817 return (plugins_ != NULL); |
eb8fbcf008b5
fix build with plugins disabled
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1582
diff
changeset
|
818 #else |
eb8fbcf008b5
fix build with plugins disabled
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1582
diff
changeset
|
819 return false; |
eb8fbcf008b5
fix build with plugins disabled
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1582
diff
changeset
|
820 #endif |
eb8fbcf008b5
fix build with plugins disabled
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1582
diff
changeset
|
821 } |
1757
98abb8d7f905
ServerContext::Apply lookup
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1741
diff
changeset
|
822 |
98abb8d7f905
ServerContext::Apply lookup
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1741
diff
changeset
|
823 |
3021
2cbafb5d5a62
renamed LookupResource::IVisitor as ServerContext::ILookupVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3015
diff
changeset
|
824 void ServerContext::Apply(ILookupVisitor& visitor, |
3033
5da6d1063d8f
effectively replacing LookupResource by DatabaseLookup in searches
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3031
diff
changeset
|
825 const DatabaseLookup& lookup, |
5da6d1063d8f
effectively replacing LookupResource by DatabaseLookup in searches
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3031
diff
changeset
|
826 ResourceType queryLevel, |
2304
563bf878407a
Argument "Since" in URI "/tools/find" (related to issue 53)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2244
diff
changeset
|
827 size_t since, |
563bf878407a
Argument "Since" in URI "/tools/find" (related to issue 53)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2244
diff
changeset
|
828 size_t limit) |
1757
98abb8d7f905
ServerContext::Apply lookup
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1741
diff
changeset
|
829 { |
3679
6358923d3ced
C-FIND: forbid wildcard matching on some VRs, ignore main tags below the queried level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3677
diff
changeset
|
830 unsigned int databaseLimit = (queryLevel == ResourceType_Instance ? |
6358923d3ced
C-FIND: forbid wildcard matching on some VRs, ignore main tags below the queried level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
831 limitFindInstances_ : limitFindResults_); |
3015
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
832 |
1757
98abb8d7f905
ServerContext::Apply lookup
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1741
diff
changeset
|
833 std::vector<std::string> resources, instances; |
3015
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
834 |
3204
8792867b739a
fix incorrect "too many results"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3175
diff
changeset
|
835 { |
8792867b739a
fix incorrect "too many results"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3175
diff
changeset
|
836 const size_t lookupLimit = (databaseLimit == 0 ? 0 : databaseLimit + 1); |
8792867b739a
fix incorrect "too many results"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3175
diff
changeset
|
837 GetIndex().ApplyLookupResources(resources, &instances, lookup, queryLevel, lookupLimit); |
8792867b739a
fix incorrect "too many results"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3175
diff
changeset
|
838 } |
3025
039a9d262d64
preparing to speed up find in databases
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3021
diff
changeset
|
839 |
3033
5da6d1063d8f
effectively replacing LookupResource by DatabaseLookup in searches
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3031
diff
changeset
|
840 bool complete = (databaseLimit == 0 || |
3204
8792867b739a
fix incorrect "too many results"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3175
diff
changeset
|
841 resources.size() <= databaseLimit); |
1757
98abb8d7f905
ServerContext::Apply lookup
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
842 |
3005
8265a6b56100
DicomMap::FromDicomAsJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3003
diff
changeset
|
843 LOG(INFO) << "Number of candidate resources after fast DB filtering on main DICOM tags: " << resources.size(); |
3003
5ae3ff2398e9
refactoring OrthancFindRequestHandler using LookupResource::IVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3001
diff
changeset
|
844 |
3679
6358923d3ced
C-FIND: forbid wildcard matching on some VRs, ignore main tags below the queried level
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parents:
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diff
changeset
|
845 /** |
6358923d3ced
C-FIND: forbid wildcard matching on some VRs, ignore main tags below the queried level
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parents:
3677
diff
changeset
|
846 * "resources" contains the Orthanc ID of the resource at level |
6358923d3ced
C-FIND: forbid wildcard matching on some VRs, ignore main tags below the queried level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
847 * "queryLevel", "instances" contains one the Orthanc ID of one |
6358923d3ced
C-FIND: forbid wildcard matching on some VRs, ignore main tags below the queried level
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parents:
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diff
changeset
|
848 * sample instance from this resource. |
6358923d3ced
C-FIND: forbid wildcard matching on some VRs, ignore main tags below the queried level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
849 **/ |
1757
98abb8d7f905
ServerContext::Apply lookup
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1741
diff
changeset
|
850 assert(resources.size() == instances.size()); |
98abb8d7f905
ServerContext::Apply lookup
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1741
diff
changeset
|
851 |
3001
7695a9c81099
refactoring /tools/find using LookupResource::IVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2965
diff
changeset
|
852 size_t countResults = 0; |
2304
563bf878407a
Argument "Since" in URI "/tools/find" (related to issue 53)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2244
diff
changeset
|
853 size_t skipped = 0; |
3015
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
854 |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
855 const bool isDicomAsJsonNeeded = visitor.IsDicomAsJsonNeeded(); |
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856 |
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|
857 for (size_t i = 0; i < instances.size(); i++) |
98abb8d7f905
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|
858 { |
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diff
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|
859 // Optimization in Orthanc 1.5.1 - Don't read the full JSON from |
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Optimization: On finds, do not read JSON (disk) if main DICOM tags (DB) are sufficient
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diff
changeset
|
860 // the disk if only "main DICOM tags" are to be returned |
af1530b45290
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861 |
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862 std::unique_ptr<Json::Value> dicomAsJson; |
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863 |
af1530b45290
Optimization: On finds, do not read JSON (disk) if main DICOM tags (DB) are sufficient
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864 bool hasOnlyMainDicomTags; |
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865 DicomMap dicom; |
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|
866 |
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867 if (findStorageAccessMode_ == FindStorageAccessMode_DatabaseOnly || |
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refactoring FindStorageAccessMode
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|
868 findStorageAccessMode_ == FindStorageAccessMode_DiskOnAnswer || |
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869 lookup.HasOnlyMainDicomTags()) |
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Optimization: On finds, do not read JSON (disk) if main DICOM tags (DB) are sufficient
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diff
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870 { |
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changeset
|
871 // Case (1): The main DICOM tags, as stored in the database, |
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Optimization: On finds, do not read JSON (disk) if main DICOM tags (DB) are sufficient
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872 // are sufficient to look for match |
3015
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|
873 |
3679
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|
874 DicomMap tmp; |
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875 if (!GetIndex().GetAllMainDicomTags(tmp, instances[i])) |
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|
876 { |
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diff
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|
877 // The instance has been removed during the execution of the |
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
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|
878 // lookup, ignore it |
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On C-FIND, avoid accessing the storage area whenever possible
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|
879 continue; |
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diff
changeset
|
880 } |
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diff
changeset
|
881 |
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diff
changeset
|
882 #if 1 |
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883 // New in Orthanc 1.6.0: Only keep the main DICOM tags at the |
6358923d3ced
C-FIND: forbid wildcard matching on some VRs, ignore main tags below the queried level
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
884 // level of interest for the query |
6358923d3ced
C-FIND: forbid wildcard matching on some VRs, ignore main tags below the queried level
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diff
changeset
|
885 switch (queryLevel) |
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C-FIND: forbid wildcard matching on some VRs, ignore main tags below the queried level
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diff
changeset
|
886 { |
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diff
changeset
|
887 // WARNING: Don't reorder cases below, and don't add "break" |
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changeset
|
888 case ResourceType_Instance: |
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|
889 dicom.MergeMainDicomTags(tmp, ResourceType_Instance); |
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890 |
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891 case ResourceType_Series: |
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892 dicom.MergeMainDicomTags(tmp, ResourceType_Series); |
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|
893 |
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|
894 case ResourceType_Study: |
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|
895 dicom.MergeMainDicomTags(tmp, ResourceType_Study); |
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|
896 |
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changeset
|
897 case ResourceType_Patient: |
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|
898 dicom.MergeMainDicomTags(tmp, ResourceType_Patient); |
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|
899 break; |
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|
900 |
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|
901 default: |
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902 throw OrthancException(ErrorCode_InternalError); |
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diff
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|
903 } |
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|
904 |
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diff
changeset
|
905 // Special case of the "Modality" at the study level, in order |
6358923d3ced
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
906 // to deal with C-FIND on "ModalitiesInStudy" (0008,0061). |
6358923d3ced
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diff
changeset
|
907 // Check out integration test "test_rest_modalities_in_study". |
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diff
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|
908 if (queryLevel == ResourceType_Study) |
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diff
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|
909 { |
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diff
changeset
|
910 dicom.CopyTagIfExists(tmp, DICOM_TAG_MODALITY); |
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C-FIND: forbid wildcard matching on some VRs, ignore main tags below the queried level
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diff
changeset
|
911 } |
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diff
changeset
|
912 #else |
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diff
changeset
|
913 dicom.Assign(tmp); // This emulates Orthanc <= 1.5.8 |
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
914 #endif |
3015
abe49ca61cd5
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diff
changeset
|
915 |
3012
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Optimization: On finds, do not read JSON (disk) if main DICOM tags (DB) are sufficient
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diff
changeset
|
916 hasOnlyMainDicomTags = true; |
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Optimization: On finds, do not read JSON (disk) if main DICOM tags (DB) are sufficient
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diff
changeset
|
917 } |
af1530b45290
Optimization: On finds, do not read JSON (disk) if main DICOM tags (DB) are sufficient
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diff
changeset
|
918 else |
af1530b45290
Optimization: On finds, do not read JSON (disk) if main DICOM tags (DB) are sufficient
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diff
changeset
|
919 { |
af1530b45290
Optimization: On finds, do not read JSON (disk) if main DICOM tags (DB) are sufficient
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
920 // Case (2): Need to read the "DICOM-as-JSON" attachment from |
af1530b45290
Optimization: On finds, do not read JSON (disk) if main DICOM tags (DB) are sufficient
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parents:
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diff
changeset
|
921 // the storage area |
af1530b45290
Optimization: On finds, do not read JSON (disk) if main DICOM tags (DB) are sufficient
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diff
changeset
|
922 dicomAsJson.reset(new Json::Value); |
af1530b45290
Optimization: On finds, do not read JSON (disk) if main DICOM tags (DB) are sufficient
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diff
changeset
|
923 ReadDicomAsJson(*dicomAsJson, instances[i]); |
af1530b45290
Optimization: On finds, do not read JSON (disk) if main DICOM tags (DB) are sufficient
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parents:
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diff
changeset
|
924 |
af1530b45290
Optimization: On finds, do not read JSON (disk) if main DICOM tags (DB) are sufficient
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diff
changeset
|
925 dicom.FromDicomAsJson(*dicomAsJson); |
af1530b45290
Optimization: On finds, do not read JSON (disk) if main DICOM tags (DB) are sufficient
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parents:
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diff
changeset
|
926 |
af1530b45290
Optimization: On finds, do not read JSON (disk) if main DICOM tags (DB) are sufficient
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diff
changeset
|
927 // This map contains the entire JSON, i.e. more than the main DICOM tags |
af1530b45290
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diff
changeset
|
928 hasOnlyMainDicomTags = false; |
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Optimization: On finds, do not read JSON (disk) if main DICOM tags (DB) are sufficient
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diff
changeset
|
929 } |
1757
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ServerContext::Apply lookup
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diff
changeset
|
930 |
98abb8d7f905
ServerContext::Apply lookup
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changeset
|
931 if (lookup.IsMatch(dicom)) |
98abb8d7f905
ServerContext::Apply lookup
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diff
changeset
|
932 { |
2304
563bf878407a
Argument "Since" in URI "/tools/find" (related to issue 53)
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
933 if (skipped < since) |
1757
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ServerContext::Apply lookup
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diff
changeset
|
934 { |
2304
563bf878407a
Argument "Since" in URI "/tools/find" (related to issue 53)
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
935 skipped++; |
563bf878407a
Argument "Since" in URI "/tools/find" (related to issue 53)
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
936 } |
563bf878407a
Argument "Since" in URI "/tools/find" (related to issue 53)
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
937 else if (limit != 0 && |
3001
7695a9c81099
refactoring /tools/find using LookupResource::IVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
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2965
diff
changeset
|
938 countResults >= limit) |
2304
563bf878407a
Argument "Since" in URI "/tools/find" (related to issue 53)
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
939 { |
3003
5ae3ff2398e9
refactoring OrthancFindRequestHandler using LookupResource::IVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
940 // Too many results, don't mark as complete |
5ae3ff2398e9
refactoring OrthancFindRequestHandler using LookupResource::IVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
941 complete = false; |
5ae3ff2398e9
refactoring OrthancFindRequestHandler using LookupResource::IVisitor
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diff
changeset
|
942 break; |
1757
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ServerContext::Apply lookup
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diff
changeset
|
943 } |
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ServerContext::Apply lookup
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diff
changeset
|
944 else |
98abb8d7f905
ServerContext::Apply lookup
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diff
changeset
|
945 { |
3677
4182cde57afb
refactoring FindStorageAccessMode
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
946 if ((findStorageAccessMode_ == FindStorageAccessMode_DiskOnLookupAndAnswer || |
4182cde57afb
refactoring FindStorageAccessMode
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diff
changeset
|
947 findStorageAccessMode_ == FindStorageAccessMode_DiskOnAnswer) && |
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changeset
|
948 dicomAsJson.get() == NULL && |
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On C-FIND, avoid accessing the storage area whenever possible
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diff
changeset
|
949 isDicomAsJsonNeeded) |
3012
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diff
changeset
|
950 { |
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Optimization: On finds, do not read JSON (disk) if main DICOM tags (DB) are sufficient
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diff
changeset
|
951 dicomAsJson.reset(new Json::Value); |
af1530b45290
Optimization: On finds, do not read JSON (disk) if main DICOM tags (DB) are sufficient
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diff
changeset
|
952 ReadDicomAsJson(*dicomAsJson, instances[i]); |
af1530b45290
Optimization: On finds, do not read JSON (disk) if main DICOM tags (DB) are sufficient
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diff
changeset
|
953 } |
af1530b45290
Optimization: On finds, do not read JSON (disk) if main DICOM tags (DB) are sufficient
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diff
changeset
|
954 |
af1530b45290
Optimization: On finds, do not read JSON (disk) if main DICOM tags (DB) are sufficient
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3005
diff
changeset
|
955 if (hasOnlyMainDicomTags) |
af1530b45290
Optimization: On finds, do not read JSON (disk) if main DICOM tags (DB) are sufficient
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3005
diff
changeset
|
956 { |
af1530b45290
Optimization: On finds, do not read JSON (disk) if main DICOM tags (DB) are sufficient
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3005
diff
changeset
|
957 // This is Case (1): The variable "dicom" only contains the main DICOM tags |
af1530b45290
Optimization: On finds, do not read JSON (disk) if main DICOM tags (DB) are sufficient
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3005
diff
changeset
|
958 visitor.Visit(resources[i], instances[i], dicom, dicomAsJson.get()); |
af1530b45290
Optimization: On finds, do not read JSON (disk) if main DICOM tags (DB) are sufficient
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3005
diff
changeset
|
959 } |
af1530b45290
Optimization: On finds, do not read JSON (disk) if main DICOM tags (DB) are sufficient
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3005
diff
changeset
|
960 else |
af1530b45290
Optimization: On finds, do not read JSON (disk) if main DICOM tags (DB) are sufficient
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3005
diff
changeset
|
961 { |
af1530b45290
Optimization: On finds, do not read JSON (disk) if main DICOM tags (DB) are sufficient
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3005
diff
changeset
|
962 // Remove the non-main DICOM tags from "dicom" if Case (2) |
af1530b45290
Optimization: On finds, do not read JSON (disk) if main DICOM tags (DB) are sufficient
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3005
diff
changeset
|
963 // was used, for consistency with Case (1) |
af1530b45290
Optimization: On finds, do not read JSON (disk) if main DICOM tags (DB) are sufficient
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3005
diff
changeset
|
964 |
af1530b45290
Optimization: On finds, do not read JSON (disk) if main DICOM tags (DB) are sufficient
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3005
diff
changeset
|
965 DicomMap mainDicomTags; |
af1530b45290
Optimization: On finds, do not read JSON (disk) if main DICOM tags (DB) are sufficient
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3005
diff
changeset
|
966 mainDicomTags.ExtractMainDicomTags(dicom); |
af1530b45290
Optimization: On finds, do not read JSON (disk) if main DICOM tags (DB) are sufficient
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3005
diff
changeset
|
967 visitor.Visit(resources[i], instances[i], mainDicomTags, dicomAsJson.get()); |
af1530b45290
Optimization: On finds, do not read JSON (disk) if main DICOM tags (DB) are sufficient
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3005
diff
changeset
|
968 } |
af1530b45290
Optimization: On finds, do not read JSON (disk) if main DICOM tags (DB) are sufficient
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3005
diff
changeset
|
969 |
3001
7695a9c81099
refactoring /tools/find using LookupResource::IVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2965
diff
changeset
|
970 countResults ++; |
1757
98abb8d7f905
ServerContext::Apply lookup
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1741
diff
changeset
|
971 } |
98abb8d7f905
ServerContext::Apply lookup
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1741
diff
changeset
|
972 } |
98abb8d7f905
ServerContext::Apply lookup
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1741
diff
changeset
|
973 } |
3001
7695a9c81099
refactoring /tools/find using LookupResource::IVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2965
diff
changeset
|
974 |
3003
5ae3ff2398e9
refactoring OrthancFindRequestHandler using LookupResource::IVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3001
diff
changeset
|
975 if (complete) |
5ae3ff2398e9
refactoring OrthancFindRequestHandler using LookupResource::IVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3001
diff
changeset
|
976 { |
5ae3ff2398e9
refactoring OrthancFindRequestHandler using LookupResource::IVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3001
diff
changeset
|
977 visitor.MarkAsComplete(); |
5ae3ff2398e9
refactoring OrthancFindRequestHandler using LookupResource::IVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3001
diff
changeset
|
978 } |
5ae3ff2398e9
refactoring OrthancFindRequestHandler using LookupResource::IVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3001
diff
changeset
|
979 |
5ae3ff2398e9
refactoring OrthancFindRequestHandler using LookupResource::IVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3001
diff
changeset
|
980 LOG(INFO) << "Number of matching resources: " << countResults; |
1757
98abb8d7f905
ServerContext::Apply lookup
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1741
diff
changeset
|
981 } |
98abb8d7f905
ServerContext::Apply lookup
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1741
diff
changeset
|
982 |
2626 | 983 |
3015
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
984 bool ServerContext::LookupOrReconstructMetadata(std::string& target, |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
985 const std::string& publicId, |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
986 MetadataType metadata) |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
987 { |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
988 // This is a backwards-compatibility function, that can |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
989 // reconstruct metadata that were not generated by an older |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
990 // release of Orthanc |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
991 |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
992 if (metadata == MetadataType_Instance_SopClassUid || |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
993 metadata == MetadataType_Instance_TransferSyntax) |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
994 { |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
995 if (index_.LookupMetadata(target, publicId, metadata)) |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
996 { |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
997 return true; |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
998 } |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
999 else |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1000 { |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1001 // These metadata are mandatory in DICOM instances, and were |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1002 // introduced in Orthanc 1.2.0. The fact that |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1003 // "LookupMetadata()" has failed indicates that this database |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1004 // comes from an older release of Orthanc. |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1005 |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1006 DicomTag tag(0, 0); |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1007 |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1008 switch (metadata) |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1009 { |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1010 case MetadataType_Instance_SopClassUid: |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1011 tag = DICOM_TAG_SOP_CLASS_UID; |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1012 break; |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1013 |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1014 case MetadataType_Instance_TransferSyntax: |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1015 tag = DICOM_TAG_TRANSFER_SYNTAX_UID; |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1016 break; |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1017 |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1018 default: |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1019 throw OrthancException(ErrorCode_InternalError); |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1020 } |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1021 |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1022 Json::Value dicomAsJson; |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1023 ReadDicomAsJson(dicomAsJson, publicId); |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1024 |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1025 DicomMap tags; |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1026 tags.FromDicomAsJson(dicomAsJson); |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1027 |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1028 const DicomValue* value = tags.TestAndGetValue(tag); |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1029 |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1030 if (value != NULL && |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1031 !value->IsNull() && |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1032 !value->IsBinary()) |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1033 { |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1034 target = value->GetContent(); |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1035 |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1036 // Store for reuse |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1037 index_.SetMetadata(publicId, metadata, target); |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1038 return true; |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1039 } |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1040 else |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1041 { |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1042 // Should never happen |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1043 return false; |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1044 } |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1045 } |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1046 } |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1047 else |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1048 { |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1049 // No backward |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1050 return index_.LookupMetadata(target, publicId, metadata); |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1051 } |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1052 } |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1053 |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1054 |
2626 | 1055 void ServerContext::AddChildInstances(SetOfInstancesJob& job, |
1056 const std::string& publicId) | |
1057 { | |
1058 std::list<std::string> instances; | |
1059 GetIndex().GetChildInstances(instances, publicId); | |
1060 | |
1061 job.Reserve(job.GetInstancesCount() + instances.size()); | |
1062 | |
1063 for (std::list<std::string>::const_iterator | |
1064 it = instances.begin(); it != instances.end(); ++it) | |
1065 { | |
1066 job.AddInstance(*it); | |
1067 } | |
1068 } | |
2940
4767d36679ed
refactoring access to Orthanc configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2925
diff
changeset
|
1069 |
4767d36679ed
refactoring access to Orthanc configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2925
diff
changeset
|
1070 |
4767d36679ed
refactoring access to Orthanc configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2925
diff
changeset
|
1071 void ServerContext::SignalUpdatedModalities() |
4767d36679ed
refactoring access to Orthanc configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2925
diff
changeset
|
1072 { |
4767d36679ed
refactoring access to Orthanc configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2925
diff
changeset
|
1073 #if ORTHANC_ENABLE_PLUGINS == 1 |
4767d36679ed
refactoring access to Orthanc configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2925
diff
changeset
|
1074 if (HasPlugins()) |
4767d36679ed
refactoring access to Orthanc configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2925
diff
changeset
|
1075 { |
4767d36679ed
refactoring access to Orthanc configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2925
diff
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1076 GetPlugins().SignalUpdatedModalities(); |
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1077 } |
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1078 #endif |
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1079 } |
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1080 |
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1081 |
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1082 void ServerContext::SignalUpdatedPeers() |
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1083 { |
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1084 #if ORTHANC_ENABLE_PLUGINS == 1 |
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1085 if (HasPlugins()) |
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1086 { |
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1087 GetPlugins().SignalUpdatedPeers(); |
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1088 } |
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1089 #endif |
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1090 } |
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1091 |
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1092 |
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1093 IStorageCommitmentFactory::ILookupHandler* |
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1094 ServerContext::CreateStorageCommitment(const std::string& jobId, |
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1095 const std::string& transactionUid, |
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1096 const std::vector<std::string>& sopClassUids, |
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1097 const std::vector<std::string>& sopInstanceUids, |
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1098 const std::string& remoteAet, |
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1099 const std::string& calledAet) |
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1100 { |
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1101 #if ORTHANC_ENABLE_PLUGINS == 1 |
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1102 if (HasPlugins()) |
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1103 { |
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1104 return GetPlugins().CreateStorageCommitment( |
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1105 jobId, transactionUid, sopClassUids, sopInstanceUids, remoteAet, calledAet); |
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1106 } |
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1107 #endif |
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1108 |
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1109 return NULL; |
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1110 } |
224 | 1111 } |