Mercurial > hg > orthanc
annotate OrthancServer/Sources/ResourceFinder.cpp @ 5771:4db9f897df58 find-refactoring
fix for DICOMWeb + PG tests
| author | Alain Mazy <am@orthanc.team> |
|---|---|
| date | Wed, 11 Sep 2024 16:31:11 +0200 |
| parents | db4bd2f9e8d2 |
| children | 093a8693ba16 |
| rev | line source |
|---|---|
| 5608 | 1 /** |
| 2 * Orthanc - A Lightweight, RESTful DICOM Store | |
| 3 * Copyright (C) 2012-2016 Sebastien Jodogne, Medical Physics | |
| 4 * Department, University Hospital of Liege, Belgium | |
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5 * Copyright (C) 2017-2023 Osimis S.A., Belgium |
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6 * Copyright (C) 2024-2024 Orthanc Team SRL, Belgium |
| 5608 | 7 * Copyright (C) 2021-2024 Sebastien Jodogne, ICTEAM UCLouvain, Belgium |
| 8 * | |
| 9 * This program is free software: you can redistribute it and/or | |
| 10 * modify it under the terms of the GNU General Public License as | |
| 11 * published by the Free Software Foundation, either version 3 of the | |
| 12 * License, or (at your option) any later version. | |
| 13 * | |
| 14 * This program is distributed in the hope that it will be useful, but | |
| 15 * WITHOUT ANY WARRANTY; without even the implied warranty of | |
| 16 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU | |
| 17 * General Public License for more details. | |
| 18 * | |
| 19 * You should have received a copy of the GNU General Public License | |
| 20 * along with this program. If not, see <http://www.gnu.org/licenses/>. | |
| 21 **/ | |
| 22 | |
| 23 | |
| 24 #include "PrecompiledHeadersServer.h" | |
| 25 #include "ResourceFinder.h" | |
| 26 | |
| 27 #include "../../OrthancFramework/Sources/DicomParsing/FromDcmtkBridge.h" | |
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28 #include "../../OrthancFramework/Sources/Logging.h" |
| 5608 | 29 #include "../../OrthancFramework/Sources/OrthancException.h" |
| 30 #include "../../OrthancFramework/Sources/SerializationToolbox.h" | |
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31 #include "OrthancConfiguration.h" |
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32 #include "Search/DatabaseLookup.h" |
| 5608 | 33 #include "ServerContext.h" |
| 34 #include "ServerIndex.h" | |
| 35 | |
| 36 | |
| 37 namespace Orthanc | |
| 38 { | |
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39 static bool IsComputedTag(const DicomTag& tag) |
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40 { |
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41 return (tag == DICOM_TAG_NUMBER_OF_PATIENT_RELATED_STUDIES || |
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42 tag == DICOM_TAG_NUMBER_OF_PATIENT_RELATED_SERIES || |
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43 tag == DICOM_TAG_NUMBER_OF_PATIENT_RELATED_INSTANCES || |
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44 tag == DICOM_TAG_NUMBER_OF_STUDY_RELATED_SERIES || |
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45 tag == DICOM_TAG_NUMBER_OF_STUDY_RELATED_INSTANCES || |
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46 tag == DICOM_TAG_NUMBER_OF_SERIES_RELATED_INSTANCES || |
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47 tag == DICOM_TAG_SOP_CLASSES_IN_STUDY || |
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48 tag == DICOM_TAG_MODALITIES_IN_STUDY || |
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49 tag == DICOM_TAG_INSTANCE_AVAILABILITY); |
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50 } |
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51 |
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52 void ResourceFinder::ConfigureChildrenCountComputedTag(DicomTag tag, |
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53 ResourceType parentLevel, |
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54 ResourceType childLevel) |
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55 { |
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56 if (request_.GetLevel() == parentLevel) |
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57 { |
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58 requestedComputedTags_.insert(tag); |
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59 hasRequestedTags_ = true; |
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60 request_.GetChildrenSpecification(childLevel).SetRetrieveIdentifiers(true); |
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61 } |
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62 } |
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63 |
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64 |
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65 void ResourceFinder::InjectChildrenCountComputedTag(DicomMap& requestedTags, |
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66 DicomTag tag, |
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67 const FindResponse::Resource& resource, |
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68 ResourceType level) const |
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69 { |
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70 if (IsRequestedComputedTag(tag)) |
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71 { |
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72 const std::set<std::string>& children = resource.GetChildrenIdentifiers(level); |
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73 requestedTags.SetValue(tag, boost::lexical_cast<std::string>(children.size()), false); |
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74 } |
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75 } |
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76 |
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77 |
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78 void ResourceFinder::InjectComputedTags(DicomMap& requestedTags, |
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79 const FindResponse::Resource& resource) const |
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80 { |
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81 switch (resource.GetLevel()) |
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82 { |
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83 case ResourceType_Patient: |
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84 InjectChildrenCountComputedTag(requestedTags, DICOM_TAG_NUMBER_OF_PATIENT_RELATED_STUDIES, resource, ResourceType_Study); |
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85 InjectChildrenCountComputedTag(requestedTags, DICOM_TAG_NUMBER_OF_PATIENT_RELATED_SERIES, resource, ResourceType_Series); |
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86 InjectChildrenCountComputedTag(requestedTags, DICOM_TAG_NUMBER_OF_PATIENT_RELATED_INSTANCES, resource, ResourceType_Instance); |
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87 break; |
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88 |
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89 case ResourceType_Study: |
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90 InjectChildrenCountComputedTag(requestedTags, DICOM_TAG_NUMBER_OF_STUDY_RELATED_SERIES, resource, ResourceType_Series); |
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91 InjectChildrenCountComputedTag(requestedTags, DICOM_TAG_NUMBER_OF_STUDY_RELATED_INSTANCES, resource, ResourceType_Instance); |
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92 |
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93 if (IsRequestedComputedTag(DICOM_TAG_MODALITIES_IN_STUDY)) |
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94 { |
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95 std::set<std::string> modalities; |
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96 resource.GetChildrenMainDicomTagValues(modalities, ResourceType_Series, DICOM_TAG_MODALITY); |
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97 |
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98 std::string s; |
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99 Toolbox::JoinStrings(s, modalities, "\\"); |
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100 |
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101 requestedTags.SetValue(DICOM_TAG_MODALITIES_IN_STUDY, s, false); |
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102 } |
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103 |
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104 if (IsRequestedComputedTag(DICOM_TAG_SOP_CLASSES_IN_STUDY)) |
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105 { |
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106 std::set<std::string> classes; |
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107 resource.GetChildrenMetadataValues(classes, ResourceType_Instance, MetadataType_Instance_SopClassUid); |
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108 |
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109 std::string s; |
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110 Toolbox::JoinStrings(s, classes, "\\"); |
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111 |
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112 requestedTags.SetValue(DICOM_TAG_SOP_CLASSES_IN_STUDY, s, false); |
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113 } |
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114 |
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115 break; |
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116 |
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117 case ResourceType_Series: |
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118 InjectChildrenCountComputedTag(requestedTags, DICOM_TAG_NUMBER_OF_SERIES_RELATED_INSTANCES, resource, ResourceType_Instance); |
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119 break; |
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120 |
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121 case ResourceType_Instance: |
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122 if (IsRequestedComputedTag(DICOM_TAG_INSTANCE_AVAILABILITY)) |
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123 { |
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124 requestedTags.SetValue(DICOM_TAG_INSTANCE_AVAILABILITY, "ONLINE", false); |
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125 } |
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126 break; |
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127 |
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128 default: |
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129 throw OrthancException(ErrorCode_InternalError); |
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130 } |
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131 } |
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132 |
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133 |
| 5608 | 134 SeriesStatus ResourceFinder::GetSeriesStatus(uint32_t& expectedNumberOfInstances, |
| 5689 | 135 const FindResponse::Resource& resource) |
| 5608 | 136 { |
| 5689 | 137 if (resource.GetLevel() != ResourceType_Series) |
| 5608 | 138 { |
| 139 throw OrthancException(ErrorCode_BadParameterType); | |
| 140 } | |
| 141 | |
| 142 std::string s; | |
| 143 if (!resource.LookupMetadata(s, ResourceType_Series, MetadataType_Series_ExpectedNumberOfInstances) || | |
| 144 !SerializationToolbox::ParseUnsignedInteger32(expectedNumberOfInstances, s)) | |
| 145 { | |
| 146 return SeriesStatus_Unknown; | |
| 147 } | |
| 148 | |
| 5674 | 149 std::set<std::string> values; |
| 150 resource.GetChildrenMetadataValues(values, ResourceType_Instance, MetadataType_Instance_IndexInSeries); | |
| 5608 | 151 |
| 152 std::set<int64_t> instances; | |
| 153 | |
| 5674 | 154 for (std::set<std::string>::const_iterator |
| 5608 | 155 it = values.begin(); it != values.end(); ++it) |
| 156 { | |
| 157 int64_t index; | |
| 158 | |
| 159 if (!SerializationToolbox::ParseInteger64(index, *it)) | |
| 160 { | |
| 161 return SeriesStatus_Unknown; | |
| 162 } | |
| 163 | |
| 164 if (index <= 0 || | |
| 165 index > static_cast<int64_t>(expectedNumberOfInstances)) | |
| 166 { | |
| 167 // Out-of-range instance index | |
| 168 return SeriesStatus_Inconsistent; | |
| 169 } | |
| 170 | |
| 171 if (instances.find(index) != instances.end()) | |
| 172 { | |
| 173 // Twice the same instance index | |
| 174 return SeriesStatus_Inconsistent; | |
| 175 } | |
| 176 | |
| 177 instances.insert(index); | |
| 178 } | |
| 179 | |
| 180 if (instances.size() == static_cast<size_t>(expectedNumberOfInstances)) | |
| 181 { | |
| 182 return SeriesStatus_Complete; | |
| 183 } | |
| 184 else | |
| 185 { | |
| 186 return SeriesStatus_Missing; | |
| 187 } | |
| 188 } | |
| 189 | |
| 190 | |
| 191 void ResourceFinder::Expand(Json::Value& target, | |
| 192 const FindResponse::Resource& resource, | |
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193 ServerIndex& index, |
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194 DicomToJsonFormat format, |
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195 bool includeAllMetadata) const |
| 5608 | 196 { |
| 197 /** | |
| 198 * This method closely follows "SerializeExpandedResource()" in | |
| 5689 | 199 * "ServerContext.cpp" from Orthanc 1.12.4. |
| 5608 | 200 **/ |
| 201 | |
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202 if (!expand_) |
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203 { |
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204 throw OrthancException(ErrorCode_BadSequenceOfCalls); |
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205 } |
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206 |
| 5608 | 207 if (resource.GetLevel() != request_.GetLevel()) |
| 208 { | |
| 209 throw OrthancException(ErrorCode_InternalError); | |
| 210 } | |
| 211 | |
| 212 target = Json::objectValue; | |
| 213 | |
| 214 target["Type"] = GetResourceTypeText(resource.GetLevel(), false, true); | |
| 215 target["ID"] = resource.GetIdentifier(); | |
| 216 | |
| 217 switch (resource.GetLevel()) | |
| 218 { | |
| 219 case ResourceType_Patient: | |
| 220 break; | |
| 221 | |
| 222 case ResourceType_Study: | |
| 223 target["ParentPatient"] = resource.GetParentIdentifier(); | |
| 224 break; | |
| 225 | |
| 226 case ResourceType_Series: | |
| 227 target["ParentStudy"] = resource.GetParentIdentifier(); | |
| 228 break; | |
| 229 | |
| 230 case ResourceType_Instance: | |
| 231 target["ParentSeries"] = resource.GetParentIdentifier(); | |
| 232 break; | |
| 233 | |
| 234 default: | |
| 235 throw OrthancException(ErrorCode_InternalError); | |
| 236 } | |
| 237 | |
| 238 if (resource.GetLevel() != ResourceType_Instance) | |
| 239 { | |
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240 const std::set<std::string>& children = resource.GetChildrenIdentifiers(GetChildResourceType(resource.GetLevel())); |
| 5608 | 241 |
| 242 Json::Value c = Json::arrayValue; | |
| 243 for (std::set<std::string>::const_iterator | |
| 244 it = children.begin(); it != children.end(); ++it) | |
| 245 { | |
| 246 c.append(*it); | |
| 247 } | |
| 248 | |
| 249 switch (resource.GetLevel()) | |
| 250 { | |
| 251 case ResourceType_Patient: | |
| 252 target["Studies"] = c; | |
| 253 break; | |
| 254 | |
| 255 case ResourceType_Study: | |
| 256 target["Series"] = c; | |
| 257 break; | |
| 258 | |
| 259 case ResourceType_Series: | |
| 260 target["Instances"] = c; | |
| 261 break; | |
| 262 | |
| 263 default: | |
| 264 throw OrthancException(ErrorCode_InternalError); | |
| 265 } | |
| 266 } | |
| 267 | |
| 268 switch (resource.GetLevel()) | |
| 269 { | |
| 270 case ResourceType_Patient: | |
| 271 case ResourceType_Study: | |
| 272 break; | |
| 273 | |
| 274 case ResourceType_Series: | |
| 275 { | |
| 276 uint32_t expectedNumberOfInstances; | |
| 277 SeriesStatus status = GetSeriesStatus(expectedNumberOfInstances, resource); | |
| 278 | |
| 279 target["Status"] = EnumerationToString(status); | |
| 280 | |
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281 static const char* const EXPECTED_NUMBER_OF_INSTANCES = "ExpectedNumberOfInstances"; |
| 5608 | 282 |
| 283 if (status == SeriesStatus_Unknown) | |
| 284 { | |
| 285 target[EXPECTED_NUMBER_OF_INSTANCES] = Json::nullValue; | |
| 286 } | |
| 287 else | |
| 288 { | |
| 289 target[EXPECTED_NUMBER_OF_INSTANCES] = expectedNumberOfInstances; | |
| 290 } | |
| 291 | |
| 292 break; | |
| 293 } | |
| 294 | |
| 295 case ResourceType_Instance: | |
| 296 { | |
| 297 FileInfo info; | |
| 298 if (resource.LookupAttachment(info, FileContentType_Dicom)) | |
| 299 { | |
| 300 target["FileSize"] = static_cast<Json::UInt64>(info.GetUncompressedSize()); | |
| 301 target["FileUuid"] = info.GetUuid(); | |
| 302 } | |
| 303 else | |
| 304 { | |
| 305 throw OrthancException(ErrorCode_InternalError); | |
| 306 } | |
| 307 | |
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308 static const char* const INDEX_IN_SERIES = "IndexInSeries"; |
| 5608 | 309 |
| 310 std::string s; | |
| 5702 | 311 uint32_t indexInSeries; |
| 5608 | 312 if (resource.LookupMetadata(s, ResourceType_Instance, MetadataType_Instance_IndexInSeries) && |
| 5702 | 313 SerializationToolbox::ParseUnsignedInteger32(indexInSeries, s)) |
| 5608 | 314 { |
| 5702 | 315 target[INDEX_IN_SERIES] = indexInSeries; |
| 5608 | 316 } |
| 317 else | |
| 318 { | |
| 319 target[INDEX_IN_SERIES] = Json::nullValue; | |
| 320 } | |
| 321 | |
| 322 break; | |
| 323 } | |
| 324 | |
| 325 default: | |
| 326 throw OrthancException(ErrorCode_InternalError); | |
| 327 } | |
| 328 | |
| 329 std::string s; | |
| 330 if (resource.LookupMetadata(s, resource.GetLevel(), MetadataType_AnonymizedFrom)) | |
| 331 { | |
| 332 target["AnonymizedFrom"] = s; | |
| 333 } | |
| 334 | |
| 335 if (resource.LookupMetadata(s, resource.GetLevel(), MetadataType_ModifiedFrom)) | |
| 336 { | |
| 337 target["ModifiedFrom"] = s; | |
| 338 } | |
| 339 | |
| 340 if (resource.GetLevel() == ResourceType_Patient || | |
| 341 resource.GetLevel() == ResourceType_Study || | |
| 342 resource.GetLevel() == ResourceType_Series) | |
| 343 { | |
| 344 target["IsStable"] = !index.IsUnstableResource(resource.GetLevel(), resource.GetInternalId()); | |
| 345 | |
| 346 if (resource.LookupMetadata(s, resource.GetLevel(), MetadataType_LastUpdate)) | |
| 347 { | |
| 348 target["LastUpdate"] = s; | |
| 349 } | |
| 350 } | |
| 351 | |
| 352 { | |
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353 DicomMap allMainDicomTags; |
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354 resource.GetMainDicomTags(allMainDicomTags, resource.GetLevel()); |
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355 |
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356 /** |
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357 * This section was part of "StatelessDatabaseOperations::ExpandResource()" |
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358 * in Orthanc <= 1.12.3 |
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359 **/ |
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360 |
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361 // read all main sequences from DB |
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362 std::string serializedSequences; |
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363 if (resource.LookupMetadata(serializedSequences, resource.GetLevel(), MetadataType_MainDicomSequences)) |
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364 { |
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365 Json::Value jsonMetadata; |
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366 Toolbox::ReadJson(jsonMetadata, serializedSequences); |
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367 |
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368 if (jsonMetadata["Version"].asInt() == 1) |
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369 { |
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370 allMainDicomTags.FromDicomAsJson(jsonMetadata["Sequences"], true /* append */, true /* parseSequences */); |
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371 } |
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372 else |
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373 { |
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374 throw OrthancException(ErrorCode_NotImplemented); |
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375 } |
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376 } |
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377 |
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378 /** |
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379 * End of section from StatelessDatabaseOperations |
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380 **/ |
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381 |
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382 |
| 5608 | 383 static const char* const MAIN_DICOM_TAGS = "MainDicomTags"; |
| 384 static const char* const PATIENT_MAIN_DICOM_TAGS = "PatientMainDicomTags"; | |
| 385 | |
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386 // TODO-FIND : Ignore "null" values |
| 5608 | 387 |
| 388 DicomMap levelMainDicomTags; | |
| 389 allMainDicomTags.ExtractResourceInformation(levelMainDicomTags, resource.GetLevel()); | |
| 390 | |
| 391 target[MAIN_DICOM_TAGS] = Json::objectValue; | |
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392 FromDcmtkBridge::ToJson(target[MAIN_DICOM_TAGS], levelMainDicomTags, format); |
| 5608 | 393 |
| 394 if (resource.GetLevel() == ResourceType_Study) | |
| 395 { | |
| 396 DicomMap patientMainDicomTags; | |
| 397 allMainDicomTags.ExtractPatientInformation(patientMainDicomTags); | |
| 398 | |
| 399 target[PATIENT_MAIN_DICOM_TAGS] = Json::objectValue; | |
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400 FromDcmtkBridge::ToJson(target[PATIENT_MAIN_DICOM_TAGS], patientMainDicomTags, format); |
| 5608 | 401 } |
| 402 } | |
| 403 | |
| 404 { | |
| 405 Json::Value labels = Json::arrayValue; | |
| 406 | |
| 407 for (std::set<std::string>::const_iterator | |
| 408 it = resource.GetLabels().begin(); it != resource.GetLabels().end(); ++it) | |
| 409 { | |
| 410 labels.append(*it); | |
| 411 } | |
| 412 | |
| 413 target["Labels"] = labels; | |
| 414 } | |
| 415 | |
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416 if (includeAllMetadata) // new in Orthanc 1.12.4 |
| 5608 | 417 { |
| 418 const std::map<MetadataType, std::string>& m = resource.GetMetadata(resource.GetLevel()); | |
| 419 | |
| 420 Json::Value metadata = Json::objectValue; | |
| 421 | |
| 422 for (std::map<MetadataType, std::string>::const_iterator it = m.begin(); it != m.end(); ++it) | |
| 423 { | |
| 424 metadata[EnumerationToString(it->first)] = it->second; | |
| 425 } | |
| 426 | |
| 427 target["Metadata"] = metadata; | |
| 428 } | |
| 429 } | |
| 430 | |
| 431 | |
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432 void ResourceFinder::UpdateRequestLimits() |
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433 { |
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434 // By default, use manual paging |
| 5693 | 435 pagingMode_ = PagingMode_FullManual; |
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436 |
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437 if (databaseLimits_ != 0) |
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438 { |
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439 request_.SetLimits(0, databaseLimits_ + 1); |
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440 } |
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441 else |
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442 { |
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443 request_.ClearLimits(); |
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444 } |
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445 |
| 5693 | 446 if (lookup_.get() == NULL && |
| 447 (hasLimitsSince_ || hasLimitsCount_)) | |
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448 { |
| 5693 | 449 pagingMode_ = PagingMode_FullDatabase; |
| 450 request_.SetLimits(limitsSince_, limitsCount_); | |
| 451 } | |
| 452 | |
| 453 if (lookup_.get() != NULL && | |
| 454 isSimpleLookup_ && | |
| 455 (hasLimitsSince_ || hasLimitsCount_)) | |
| 456 { | |
| 457 /** | |
| 458 * TODO-FIND: "IDatabaseWrapper::ApplyLookupResources()" only | |
| 459 * accept the "limit" argument. The "since" must be implemented | |
| 460 * manually. | |
| 461 **/ | |
| 462 | |
| 463 if (hasLimitsSince_ && | |
| 464 limitsSince_ != 0) | |
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465 { |
| 5693 | 466 pagingMode_ = PagingMode_ManualSkip; |
| 467 request_.SetLimits(0, limitsCount_ + limitsSince_); | |
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468 } |
| 5693 | 469 else |
| 470 { | |
| 471 pagingMode_ = PagingMode_FullDatabase; | |
| 472 request_.SetLimits(0, limitsCount_); | |
| 473 } | |
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474 } |
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475 |
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476 // TODO-FIND: More cases could be added, depending on "GetDatabaseCapabilities()" |
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477 } |
|
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|
478 |
|
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|
479 |
| 5608 | 480 ResourceFinder::ResourceFinder(ResourceType level, |
| 481 bool expand) : | |
| 482 request_(level), | |
|
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483 databaseLimits_(0), |
| 5693 | 484 isSimpleLookup_(true), |
| 485 pagingMode_(PagingMode_FullManual), | |
| 486 hasLimitsSince_(false), | |
| 487 hasLimitsCount_(false), | |
|
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488 limitsSince_(0), |
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489 limitsCount_(0), |
| 5608 | 490 expand_(expand), |
|
5617
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started listing of children resources
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|
491 allowStorageAccess_(true), |
|
5713
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|
492 hasRequestedTags_(false) |
| 5608 | 493 { |
|
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494 UpdateRequestLimits(); |
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495 |
| 5608 | 496 if (expand) |
| 497 { | |
|
5619
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|
498 request_.SetRetrieveMainDicomTags(true); |
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499 request_.SetRetrieveMetadata(true); |
| 5608 | 500 request_.SetRetrieveLabels(true); |
| 501 | |
|
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502 switch (level) |
| 5608 | 503 { |
|
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|
504 case ResourceType_Patient: |
|
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505 request_.GetChildrenSpecification(ResourceType_Study).SetRetrieveIdentifiers(true); |
|
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506 break; |
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|
507 |
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|
508 case ResourceType_Study: |
|
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509 request_.GetChildrenSpecification(ResourceType_Series).SetRetrieveIdentifiers(true); |
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510 request_.SetRetrieveParentIdentifier(true); |
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511 break; |
| 5608 | 512 |
|
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|
513 case ResourceType_Series: |
|
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|
514 request_.GetChildrenSpecification(ResourceType_Instance).AddMetadata(MetadataType_Instance_IndexInSeries); // required for the SeriesStatus |
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|
515 request_.GetChildrenSpecification(ResourceType_Instance).SetRetrieveIdentifiers(true); |
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516 request_.SetRetrieveParentIdentifier(true); |
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|
517 break; |
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|
518 |
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|
519 case ResourceType_Instance: |
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520 request_.SetRetrieveAttachments(true); // for FileSize & FileUuid |
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|
521 request_.SetRetrieveParentIdentifier(true); |
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|
522 break; |
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|
523 |
|
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diff
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|
524 default: |
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|
525 throw OrthancException(ErrorCode_ParameterOutOfRange); |
| 5608 | 526 } |
| 527 } | |
| 528 } | |
| 529 | |
| 530 | |
|
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|
531 void ResourceFinder::SetDatabaseLimits(uint64_t limits) |
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|
532 { |
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|
533 databaseLimits_ = limits; |
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|
534 UpdateRequestLimits(); |
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|
535 } |
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|
536 |
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|
537 |
| 5693 | 538 void ResourceFinder::SetLimitsSince(uint64_t since) |
|
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|
539 { |
| 5693 | 540 if (hasLimitsSince_) |
|
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|
541 { |
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|
542 throw OrthancException(ErrorCode_BadSequenceOfCalls); |
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|
543 } |
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|
544 else |
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|
545 { |
| 5693 | 546 hasLimitsSince_ = true; |
|
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|
547 limitsSince_ = since; |
| 5693 | 548 UpdateRequestLimits(); |
| 549 } | |
| 550 } | |
| 551 | |
| 552 | |
| 553 void ResourceFinder::SetLimitsCount(uint64_t count) | |
| 554 { | |
| 555 if (hasLimitsCount_) | |
| 556 { | |
| 557 throw OrthancException(ErrorCode_BadSequenceOfCalls); | |
| 558 } | |
| 559 else | |
| 560 { | |
| 561 hasLimitsCount_ = true; | |
|
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|
562 limitsCount_ = count; |
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|
563 UpdateRequestLimits(); |
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|
564 } |
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|
565 } |
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|
566 |
|
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diff
changeset
|
567 |
|
5682
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started refactoring of ServerContext::Apply()
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changeset
|
568 void ResourceFinder::SetDatabaseLookup(const DatabaseLookup& lookup) |
|
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started refactoring of ServerContext::Apply()
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|
569 { |
| 5694 | 570 MainDicomTagsRegistry registry; |
| 571 | |
|
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|
572 lookup_.reset(lookup.Clone()); |
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changeset
|
573 |
|
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diff
changeset
|
574 for (size_t i = 0; i < lookup.GetConstraintsCount(); i++) |
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changeset
|
575 { |
|
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changeset
|
576 DicomTag tag = lookup.GetConstraint(i).GetTag(); |
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changeset
|
577 if (IsComputedTag(tag)) |
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changeset
|
578 { |
|
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integrating DatabaseLookup into ResourceFinder
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diff
changeset
|
579 AddRequestedTag(tag); |
|
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diff
changeset
|
580 } |
| 5694 | 581 else |
| 582 { | |
| 583 ResourceType level; | |
| 584 DicomTagType tagType; | |
| 585 registry.LookupTag(level, tagType, tag); | |
| 586 if (tagType == DicomTagType_Generic) | |
| 587 { | |
| 588 AddRequestedTag(tag); | |
| 589 } | |
| 590 } | |
|
5686
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|
591 } |
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changeset
|
592 |
| 5693 | 593 isSimpleLookup_ = registry.NormalizeLookup(request_.GetDicomTagConstraints(), lookup, request_.GetLevel()); |
|
5686
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diff
changeset
|
594 |
|
5690
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diff
changeset
|
595 // "request_.GetDicomTagConstraints()" only contains constraints on main DICOM tags |
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diff
changeset
|
596 |
|
5686
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diff
changeset
|
597 for (size_t i = 0; i < request_.GetDicomTagConstraints().GetSize(); i++) |
|
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changeset
|
598 { |
|
5690
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diff
changeset
|
599 const DatabaseConstraint& constraint = request_.GetDicomTagConstraints().GetConstraint(i); |
|
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|
600 if (constraint.GetLevel() == request_.GetLevel()) |
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|
601 { |
|
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changeset
|
602 request_.SetRetrieveMainDicomTags(true); |
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diff
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|
603 } |
|
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|
604 else if (IsResourceLevelAboveOrEqual(constraint.GetLevel(), request_.GetLevel())) |
|
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changeset
|
605 { |
|
5690
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diff
changeset
|
606 request_.GetParentSpecification(constraint.GetLevel()).SetRetrieveMainDicomTags(true); |
|
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diff
changeset
|
607 } |
|
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diff
changeset
|
608 else |
|
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diff
changeset
|
609 { |
|
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changeset
|
610 LOG(WARNING) << "Executing a database lookup at level " << EnumerationToString(request_.GetLevel()) |
|
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changeset
|
611 << " on main DICOM tag " << constraint.GetTag().Format() << " from an inferior level (" |
|
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diff
changeset
|
612 << EnumerationToString(constraint.GetLevel()) << "), this will return no result"; |
|
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changeset
|
613 } |
|
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changeset
|
614 |
|
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changeset
|
615 if (IsComputedTag(constraint.GetTag())) |
|
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changeset
|
616 { |
|
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changeset
|
617 // Sanity check |
|
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|
618 throw OrthancException(ErrorCode_InternalError); |
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|
619 } |
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|
620 } |
|
5692
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improved handling of limits
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changeset
|
621 |
|
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changeset
|
622 UpdateRequestLimits(); |
|
5682
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|
623 } |
|
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started refactoring of ServerContext::Apply()
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changeset
|
624 |
|
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started refactoring of ServerContext::Apply()
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changeset
|
625 |
|
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changeset
|
626 void ResourceFinder::AddRequestedTag(const DicomTag& tag) |
|
5609
4690a0d2b01e
preliminary support of requestedTags
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diff
changeset
|
627 { |
|
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preliminary support of requestedTags
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5608
diff
changeset
|
628 if (DicomMap::IsMainDicomTag(tag, ResourceType_Patient)) |
|
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5608
diff
changeset
|
629 { |
|
5620
4bfd885fb45f
optimization as patient-level tags are copied at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5619
diff
changeset
|
630 if (request_.GetLevel() == ResourceType_Patient) |
|
4bfd885fb45f
optimization as patient-level tags are copied at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5619
diff
changeset
|
631 { |
| 5697 | 632 request_.SetRetrieveMainDicomTags(true); |
|
5620
4bfd885fb45f
optimization as patient-level tags are copied at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5619
diff
changeset
|
633 requestedPatientTags_.insert(tag); |
|
4bfd885fb45f
optimization as patient-level tags are copied at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5619
diff
changeset
|
634 } |
|
4bfd885fb45f
optimization as patient-level tags are copied at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5619
diff
changeset
|
635 else |
|
4bfd885fb45f
optimization as patient-level tags are copied at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5619
diff
changeset
|
636 { |
|
4bfd885fb45f
optimization as patient-level tags are copied at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5619
diff
changeset
|
637 /** |
|
4bfd885fb45f
optimization as patient-level tags are copied at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5619
diff
changeset
|
638 * This comes from the fact that patient-level tags are copied |
|
4bfd885fb45f
optimization as patient-level tags are copied at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5619
diff
changeset
|
639 * at the study level, as implemented by "ResourcesContent::AddResource()". |
|
4bfd885fb45f
optimization as patient-level tags are copied at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5619
diff
changeset
|
640 **/ |
| 5697 | 641 requestedStudyTags_.insert(tag); |
| 642 | |
| 643 if (request_.GetLevel() == ResourceType_Study) | |
| 644 { | |
| 645 request_.SetRetrieveMainDicomTags(true); | |
| 646 } | |
| 647 else | |
| 648 { | |
| 649 request_.GetParentSpecification(ResourceType_Study).SetRetrieveMainDicomTags(true); | |
| 650 } | |
| 651 | |
|
5620
4bfd885fb45f
optimization as patient-level tags are copied at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5619
diff
changeset
|
652 requestedStudyTags_.insert(tag); |
|
4bfd885fb45f
optimization as patient-level tags are copied at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5619
diff
changeset
|
653 } |
|
5665
d8c86698110c
implemented computed tag: Instance Availability
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5641
diff
changeset
|
654 |
|
d8c86698110c
implemented computed tag: Instance Availability
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5641
diff
changeset
|
655 hasRequestedTags_ = true; |
|
5609
4690a0d2b01e
preliminary support of requestedTags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5608
diff
changeset
|
656 } |
|
4690a0d2b01e
preliminary support of requestedTags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5608
diff
changeset
|
657 else if (DicomMap::IsMainDicomTag(tag, ResourceType_Study)) |
|
4690a0d2b01e
preliminary support of requestedTags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5608
diff
changeset
|
658 { |
|
4690a0d2b01e
preliminary support of requestedTags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5608
diff
changeset
|
659 if (request_.GetLevel() == ResourceType_Patient) |
|
4690a0d2b01e
preliminary support of requestedTags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5608
diff
changeset
|
660 { |
|
5612
599ce5ed126c
added more tolerance to behave like previous releases
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5610
diff
changeset
|
661 LOG(WARNING) << "Requested tag " << tag.Format() |
|
599ce5ed126c
added more tolerance to behave like previous releases
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5610
diff
changeset
|
662 << " should only be read at the study, series, or instance level"; |
|
599ce5ed126c
added more tolerance to behave like previous releases
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5610
diff
changeset
|
663 requestedTagsFromFileStorage_.insert(tag); |
|
599ce5ed126c
added more tolerance to behave like previous releases
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5610
diff
changeset
|
664 request_.SetRetrieveOneInstanceIdentifier(true); |
|
5609
4690a0d2b01e
preliminary support of requestedTags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5608
diff
changeset
|
665 } |
|
4690a0d2b01e
preliminary support of requestedTags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5608
diff
changeset
|
666 else |
|
4690a0d2b01e
preliminary support of requestedTags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5608
diff
changeset
|
667 { |
| 5697 | 668 if (request_.GetLevel() == ResourceType_Study) |
| 669 { | |
| 670 request_.SetRetrieveMainDicomTags(true); | |
| 671 } | |
| 672 else | |
| 673 { | |
| 674 request_.GetParentSpecification(ResourceType_Study).SetRetrieveMainDicomTags(true); | |
| 675 } | |
| 676 | |
|
5609
4690a0d2b01e
preliminary support of requestedTags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5608
diff
changeset
|
677 requestedStudyTags_.insert(tag); |
|
4690a0d2b01e
preliminary support of requestedTags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5608
diff
changeset
|
678 } |
|
5665
d8c86698110c
implemented computed tag: Instance Availability
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5641
diff
changeset
|
679 |
|
d8c86698110c
implemented computed tag: Instance Availability
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5641
diff
changeset
|
680 hasRequestedTags_ = true; |
|
5609
4690a0d2b01e
preliminary support of requestedTags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5608
diff
changeset
|
681 } |
|
4690a0d2b01e
preliminary support of requestedTags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5608
diff
changeset
|
682 else if (DicomMap::IsMainDicomTag(tag, ResourceType_Series)) |
|
4690a0d2b01e
preliminary support of requestedTags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5608
diff
changeset
|
683 { |
|
4690a0d2b01e
preliminary support of requestedTags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5608
diff
changeset
|
684 if (request_.GetLevel() == ResourceType_Patient || |
|
4690a0d2b01e
preliminary support of requestedTags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5608
diff
changeset
|
685 request_.GetLevel() == ResourceType_Study) |
|
4690a0d2b01e
preliminary support of requestedTags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5608
diff
changeset
|
686 { |
|
5612
599ce5ed126c
added more tolerance to behave like previous releases
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5610
diff
changeset
|
687 LOG(WARNING) << "Requested tag " << tag.Format() |
|
599ce5ed126c
added more tolerance to behave like previous releases
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5610
diff
changeset
|
688 << " should only be read at the series or instance level"; |
|
599ce5ed126c
added more tolerance to behave like previous releases
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5610
diff
changeset
|
689 requestedTagsFromFileStorage_.insert(tag); |
|
599ce5ed126c
added more tolerance to behave like previous releases
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5610
diff
changeset
|
690 request_.SetRetrieveOneInstanceIdentifier(true); |
|
5609
4690a0d2b01e
preliminary support of requestedTags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5608
diff
changeset
|
691 } |
|
4690a0d2b01e
preliminary support of requestedTags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5608
diff
changeset
|
692 else |
|
4690a0d2b01e
preliminary support of requestedTags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5608
diff
changeset
|
693 { |
| 5697 | 694 if (request_.GetLevel() == ResourceType_Series) |
| 695 { | |
| 696 request_.SetRetrieveMainDicomTags(true); | |
| 697 } | |
| 698 else | |
| 699 { | |
| 700 request_.GetParentSpecification(ResourceType_Series).SetRetrieveMainDicomTags(true); | |
| 701 } | |
| 702 | |
|
5609
4690a0d2b01e
preliminary support of requestedTags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5608
diff
changeset
|
703 requestedSeriesTags_.insert(tag); |
|
4690a0d2b01e
preliminary support of requestedTags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5608
diff
changeset
|
704 } |
|
5665
d8c86698110c
implemented computed tag: Instance Availability
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5641
diff
changeset
|
705 |
|
d8c86698110c
implemented computed tag: Instance Availability
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5641
diff
changeset
|
706 hasRequestedTags_ = true; |
|
5609
4690a0d2b01e
preliminary support of requestedTags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5608
diff
changeset
|
707 } |
|
4690a0d2b01e
preliminary support of requestedTags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5608
diff
changeset
|
708 else if (DicomMap::IsMainDicomTag(tag, ResourceType_Instance)) |
|
4690a0d2b01e
preliminary support of requestedTags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5608
diff
changeset
|
709 { |
|
4690a0d2b01e
preliminary support of requestedTags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5608
diff
changeset
|
710 if (request_.GetLevel() == ResourceType_Patient || |
|
4690a0d2b01e
preliminary support of requestedTags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5608
diff
changeset
|
711 request_.GetLevel() == ResourceType_Study || |
|
4690a0d2b01e
preliminary support of requestedTags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5608
diff
changeset
|
712 request_.GetLevel() == ResourceType_Series) |
|
4690a0d2b01e
preliminary support of requestedTags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5608
diff
changeset
|
713 { |
|
5612
599ce5ed126c
added more tolerance to behave like previous releases
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5610
diff
changeset
|
714 LOG(WARNING) << "Requested tag " << tag.Format() |
|
599ce5ed126c
added more tolerance to behave like previous releases
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5610
diff
changeset
|
715 << " should only be read at the instance level"; |
|
599ce5ed126c
added more tolerance to behave like previous releases
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5610
diff
changeset
|
716 requestedTagsFromFileStorage_.insert(tag); |
|
599ce5ed126c
added more tolerance to behave like previous releases
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5610
diff
changeset
|
717 request_.SetRetrieveOneInstanceIdentifier(true); |
|
5609
4690a0d2b01e
preliminary support of requestedTags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5608
diff
changeset
|
718 } |
|
4690a0d2b01e
preliminary support of requestedTags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5608
diff
changeset
|
719 else |
|
4690a0d2b01e
preliminary support of requestedTags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5608
diff
changeset
|
720 { |
|
5699
e8e028aed89f
c-find tests pass using ResourceFinder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5697
diff
changeset
|
721 request_.SetRetrieveMainDicomTags(true); |
|
5609
4690a0d2b01e
preliminary support of requestedTags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5608
diff
changeset
|
722 requestedInstanceTags_.insert(tag); |
|
4690a0d2b01e
preliminary support of requestedTags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5608
diff
changeset
|
723 } |
|
5665
d8c86698110c
implemented computed tag: Instance Availability
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5641
diff
changeset
|
724 |
|
d8c86698110c
implemented computed tag: Instance Availability
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5641
diff
changeset
|
725 hasRequestedTags_ = true; |
|
d8c86698110c
implemented computed tag: Instance Availability
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5641
diff
changeset
|
726 } |
|
5666
aa231c18b9d2
adding computed tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5665
diff
changeset
|
727 else if (tag == DICOM_TAG_NUMBER_OF_PATIENT_RELATED_STUDIES) |
|
aa231c18b9d2
adding computed tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5665
diff
changeset
|
728 { |
|
aa231c18b9d2
adding computed tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5665
diff
changeset
|
729 ConfigureChildrenCountComputedTag(tag, ResourceType_Patient, ResourceType_Study); |
|
aa231c18b9d2
adding computed tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5665
diff
changeset
|
730 } |
|
aa231c18b9d2
adding computed tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5665
diff
changeset
|
731 else if (tag == DICOM_TAG_NUMBER_OF_PATIENT_RELATED_SERIES) |
|
aa231c18b9d2
adding computed tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5665
diff
changeset
|
732 { |
|
aa231c18b9d2
adding computed tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5665
diff
changeset
|
733 ConfigureChildrenCountComputedTag(tag, ResourceType_Patient, ResourceType_Series); |
|
aa231c18b9d2
adding computed tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5665
diff
changeset
|
734 } |
|
aa231c18b9d2
adding computed tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5665
diff
changeset
|
735 else if (tag == DICOM_TAG_NUMBER_OF_PATIENT_RELATED_INSTANCES) |
|
aa231c18b9d2
adding computed tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5665
diff
changeset
|
736 { |
|
aa231c18b9d2
adding computed tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5665
diff
changeset
|
737 ConfigureChildrenCountComputedTag(tag, ResourceType_Patient, ResourceType_Instance); |
|
aa231c18b9d2
adding computed tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5665
diff
changeset
|
738 } |
|
aa231c18b9d2
adding computed tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5665
diff
changeset
|
739 else if (tag == DICOM_TAG_NUMBER_OF_STUDY_RELATED_SERIES) |
|
aa231c18b9d2
adding computed tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5665
diff
changeset
|
740 { |
|
aa231c18b9d2
adding computed tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5665
diff
changeset
|
741 ConfigureChildrenCountComputedTag(tag, ResourceType_Study, ResourceType_Series); |
|
aa231c18b9d2
adding computed tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5665
diff
changeset
|
742 } |
|
aa231c18b9d2
adding computed tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5665
diff
changeset
|
743 else if (tag == DICOM_TAG_NUMBER_OF_STUDY_RELATED_INSTANCES) |
|
aa231c18b9d2
adding computed tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5665
diff
changeset
|
744 { |
|
aa231c18b9d2
adding computed tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5665
diff
changeset
|
745 ConfigureChildrenCountComputedTag(tag, ResourceType_Study, ResourceType_Instance); |
|
aa231c18b9d2
adding computed tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5665
diff
changeset
|
746 } |
|
aa231c18b9d2
adding computed tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5665
diff
changeset
|
747 else if (tag == DICOM_TAG_NUMBER_OF_SERIES_RELATED_INSTANCES) |
|
aa231c18b9d2
adding computed tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5665
diff
changeset
|
748 { |
|
aa231c18b9d2
adding computed tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5665
diff
changeset
|
749 ConfigureChildrenCountComputedTag(tag, ResourceType_Series, ResourceType_Instance); |
|
aa231c18b9d2
adding computed tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5665
diff
changeset
|
750 } |
|
5668
bd1352bd9d82
configuring requests for ModalitiesInStudy and SOPClassesInStudy
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5667
diff
changeset
|
751 else if (tag == DICOM_TAG_SOP_CLASSES_IN_STUDY) |
|
bd1352bd9d82
configuring requests for ModalitiesInStudy and SOPClassesInStudy
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5667
diff
changeset
|
752 { |
|
bd1352bd9d82
configuring requests for ModalitiesInStudy and SOPClassesInStudy
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5667
diff
changeset
|
753 requestedComputedTags_.insert(tag); |
|
bd1352bd9d82
configuring requests for ModalitiesInStudy and SOPClassesInStudy
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5667
diff
changeset
|
754 hasRequestedTags_ = true; |
|
5676
b744a2cf408a
shorten ParentRetrieveSpecification/ChildrenRetrieveSpecification as ParentSpecification/ChildrenSpecification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5674
diff
changeset
|
755 request_.GetChildrenSpecification(ResourceType_Instance).AddMetadata(MetadataType_Instance_SopClassUid); |
|
5668
bd1352bd9d82
configuring requests for ModalitiesInStudy and SOPClassesInStudy
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5667
diff
changeset
|
756 } |
|
bd1352bd9d82
configuring requests for ModalitiesInStudy and SOPClassesInStudy
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5667
diff
changeset
|
757 else if (tag == DICOM_TAG_MODALITIES_IN_STUDY) |
|
bd1352bd9d82
configuring requests for ModalitiesInStudy and SOPClassesInStudy
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5667
diff
changeset
|
758 { |
|
bd1352bd9d82
configuring requests for ModalitiesInStudy and SOPClassesInStudy
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5667
diff
changeset
|
759 requestedComputedTags_.insert(tag); |
|
bd1352bd9d82
configuring requests for ModalitiesInStudy and SOPClassesInStudy
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5667
diff
changeset
|
760 hasRequestedTags_ = true; |
|
5752
717acb0ea546
fix DICOMWeb integration tests
Alain Mazy <am@orthanc.team>
parents:
5714
diff
changeset
|
761 if (request_.GetLevel() < ResourceType_Series) |
|
717acb0ea546
fix DICOMWeb integration tests
Alain Mazy <am@orthanc.team>
parents:
5714
diff
changeset
|
762 { |
|
717acb0ea546
fix DICOMWeb integration tests
Alain Mazy <am@orthanc.team>
parents:
5714
diff
changeset
|
763 request_.GetChildrenSpecification(ResourceType_Series).AddMainDicomTag(DICOM_TAG_MODALITY); |
|
717acb0ea546
fix DICOMWeb integration tests
Alain Mazy <am@orthanc.team>
parents:
5714
diff
changeset
|
764 } |
|
717acb0ea546
fix DICOMWeb integration tests
Alain Mazy <am@orthanc.team>
parents:
5714
diff
changeset
|
765 else if (request_.GetLevel() == ResourceType_Instance) // this happens in QIDO-RS when searching for instances without specifying a StudyInstanceUID -> all Study level tags must be included in the response |
|
717acb0ea546
fix DICOMWeb integration tests
Alain Mazy <am@orthanc.team>
parents:
5714
diff
changeset
|
766 { |
|
717acb0ea546
fix DICOMWeb integration tests
Alain Mazy <am@orthanc.team>
parents:
5714
diff
changeset
|
767 request_.GetParentSpecification(ResourceType_Series).SetRetrieveMainDicomTags(true); |
|
717acb0ea546
fix DICOMWeb integration tests
Alain Mazy <am@orthanc.team>
parents:
5714
diff
changeset
|
768 } |
|
5668
bd1352bd9d82
configuring requests for ModalitiesInStudy and SOPClassesInStudy
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5667
diff
changeset
|
769 } |
|
5665
d8c86698110c
implemented computed tag: Instance Availability
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5641
diff
changeset
|
770 else if (tag == DICOM_TAG_INSTANCE_AVAILABILITY) |
|
d8c86698110c
implemented computed tag: Instance Availability
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5641
diff
changeset
|
771 { |
|
d8c86698110c
implemented computed tag: Instance Availability
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
772 requestedComputedTags_.insert(tag); |
|
d8c86698110c
implemented computed tag: Instance Availability
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
773 hasRequestedTags_ = true; |
|
d8c86698110c
implemented computed tag: Instance Availability
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5641
diff
changeset
|
774 } |
|
5609
4690a0d2b01e
preliminary support of requestedTags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5608
diff
changeset
|
775 else |
|
4690a0d2b01e
preliminary support of requestedTags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5608
diff
changeset
|
776 { |
|
5665
d8c86698110c
implemented computed tag: Instance Availability
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5641
diff
changeset
|
777 // This is neither a main DICOM tag, nor a computed DICOM tag: |
|
d8c86698110c
implemented computed tag: Instance Availability
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5641
diff
changeset
|
778 // We will be forced to access the DICOM file anyway |
|
5609
4690a0d2b01e
preliminary support of requestedTags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5608
diff
changeset
|
779 requestedTagsFromFileStorage_.insert(tag); |
|
5610
d4b570834d3a
adding safeguards around FindRequest::SetRetrieveOneInstanceIdentifier()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5609
diff
changeset
|
780 |
|
d4b570834d3a
adding safeguards around FindRequest::SetRetrieveOneInstanceIdentifier()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5609
diff
changeset
|
781 if (request_.GetLevel() != ResourceType_Instance) |
|
d4b570834d3a
adding safeguards around FindRequest::SetRetrieveOneInstanceIdentifier()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5609
diff
changeset
|
782 { |
|
d4b570834d3a
adding safeguards around FindRequest::SetRetrieveOneInstanceIdentifier()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5609
diff
changeset
|
783 request_.SetRetrieveOneInstanceIdentifier(true); |
|
d4b570834d3a
adding safeguards around FindRequest::SetRetrieveOneInstanceIdentifier()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5609
diff
changeset
|
784 } |
|
5665
d8c86698110c
implemented computed tag: Instance Availability
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5641
diff
changeset
|
785 |
|
d8c86698110c
implemented computed tag: Instance Availability
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5641
diff
changeset
|
786 hasRequestedTags_ = true; |
|
5609
4690a0d2b01e
preliminary support of requestedTags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5608
diff
changeset
|
787 } |
|
4690a0d2b01e
preliminary support of requestedTags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5608
diff
changeset
|
788 } |
|
4690a0d2b01e
preliminary support of requestedTags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5608
diff
changeset
|
789 |
|
4690a0d2b01e
preliminary support of requestedTags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5608
diff
changeset
|
790 |
|
4690a0d2b01e
preliminary support of requestedTags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5608
diff
changeset
|
791 void ResourceFinder::AddRequestedTags(const std::set<DicomTag>& tags) |
|
4690a0d2b01e
preliminary support of requestedTags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5608
diff
changeset
|
792 { |
|
4690a0d2b01e
preliminary support of requestedTags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5608
diff
changeset
|
793 for (std::set<DicomTag>::const_iterator it = tags.begin(); it != tags.end(); ++it) |
|
4690a0d2b01e
preliminary support of requestedTags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5608
diff
changeset
|
794 { |
|
5686
11575590e493
integrating DatabaseLookup into ResourceFinder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5682
diff
changeset
|
795 AddRequestedTag(*it); |
|
5609
4690a0d2b01e
preliminary support of requestedTags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5608
diff
changeset
|
796 } |
|
4690a0d2b01e
preliminary support of requestedTags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5608
diff
changeset
|
797 } |
|
4690a0d2b01e
preliminary support of requestedTags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5608
diff
changeset
|
798 |
|
4690a0d2b01e
preliminary support of requestedTags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5608
diff
changeset
|
799 |
|
5666
aa231c18b9d2
adding computed tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5665
diff
changeset
|
800 static void InjectRequestedTags(DicomMap& requestedTags, |
|
aa231c18b9d2
adding computed tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5665
diff
changeset
|
801 std::set<DicomTag>& missingTags /* out */, |
|
aa231c18b9d2
adding computed tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5665
diff
changeset
|
802 const FindResponse::Resource& resource, |
|
aa231c18b9d2
adding computed tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5665
diff
changeset
|
803 ResourceType level, |
|
aa231c18b9d2
adding computed tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5665
diff
changeset
|
804 const std::set<DicomTag>& tags) |
|
5665
d8c86698110c
implemented computed tag: Instance Availability
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5641
diff
changeset
|
805 { |
|
5666
aa231c18b9d2
adding computed tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5665
diff
changeset
|
806 if (!tags.empty()) |
|
5665
d8c86698110c
implemented computed tag: Instance Availability
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5641
diff
changeset
|
807 { |
|
5666
aa231c18b9d2
adding computed tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5665
diff
changeset
|
808 DicomMap m; |
|
aa231c18b9d2
adding computed tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5665
diff
changeset
|
809 resource.GetMainDicomTags(m, level); |
|
5665
d8c86698110c
implemented computed tag: Instance Availability
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5641
diff
changeset
|
810 |
|
5666
aa231c18b9d2
adding computed tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5665
diff
changeset
|
811 for (std::set<DicomTag>::const_iterator it = tags.begin(); it != tags.end(); ++it) |
|
aa231c18b9d2
adding computed tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5665
diff
changeset
|
812 { |
|
aa231c18b9d2
adding computed tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5665
diff
changeset
|
813 std::string value; |
|
aa231c18b9d2
adding computed tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5665
diff
changeset
|
814 if (m.LookupStringValue(value, *it, false /* not binary */)) |
|
5665
d8c86698110c
implemented computed tag: Instance Availability
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5641
diff
changeset
|
815 { |
|
5666
aa231c18b9d2
adding computed tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5665
diff
changeset
|
816 requestedTags.SetValue(*it, value, false /* not binary */); |
|
5665
d8c86698110c
implemented computed tag: Instance Availability
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5641
diff
changeset
|
817 } |
|
5666
aa231c18b9d2
adding computed tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5665
diff
changeset
|
818 else |
|
5665
d8c86698110c
implemented computed tag: Instance Availability
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5641
diff
changeset
|
819 { |
|
5666
aa231c18b9d2
adding computed tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5665
diff
changeset
|
820 // This is the case where the Housekeeper should be run |
|
aa231c18b9d2
adding computed tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5665
diff
changeset
|
821 missingTags.insert(*it); |
|
5665
d8c86698110c
implemented computed tag: Instance Availability
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5641
diff
changeset
|
822 } |
|
5666
aa231c18b9d2
adding computed tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5665
diff
changeset
|
823 } |
|
5665
d8c86698110c
implemented computed tag: Instance Availability
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5641
diff
changeset
|
824 } |
|
d8c86698110c
implemented computed tag: Instance Availability
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5641
diff
changeset
|
825 } |
|
d8c86698110c
implemented computed tag: Instance Availability
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5641
diff
changeset
|
826 |
|
d8c86698110c
implemented computed tag: Instance Availability
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5641
diff
changeset
|
827 |
|
d8c86698110c
implemented computed tag: Instance Availability
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5641
diff
changeset
|
828 static void ReadMissingTagsFromStorageArea(DicomMap& requestedTags, |
|
d8c86698110c
implemented computed tag: Instance Availability
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5641
diff
changeset
|
829 ServerContext& context, |
|
d8c86698110c
implemented computed tag: Instance Availability
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5641
diff
changeset
|
830 const FindRequest& request, |
|
d8c86698110c
implemented computed tag: Instance Availability
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5641
diff
changeset
|
831 const FindResponse::Resource& resource, |
|
d8c86698110c
implemented computed tag: Instance Availability
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5641
diff
changeset
|
832 const std::set<DicomTag>& missingTags) |
|
d8c86698110c
implemented computed tag: Instance Availability
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5641
diff
changeset
|
833 { |
|
d8c86698110c
implemented computed tag: Instance Availability
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5641
diff
changeset
|
834 OrthancConfiguration::ReaderLock lock; |
|
d8c86698110c
implemented computed tag: Instance Availability
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5641
diff
changeset
|
835 if (lock.GetConfiguration().IsWarningEnabled(Warnings_001_TagsBeingReadFromStorage)) |
|
d8c86698110c
implemented computed tag: Instance Availability
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5641
diff
changeset
|
836 { |
|
d8c86698110c
implemented computed tag: Instance Availability
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5641
diff
changeset
|
837 std::string missings; |
|
d8c86698110c
implemented computed tag: Instance Availability
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5641
diff
changeset
|
838 FromDcmtkBridge::FormatListOfTags(missings, missingTags); |
|
d8c86698110c
implemented computed tag: Instance Availability
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5641
diff
changeset
|
839 |
|
5699
e8e028aed89f
c-find tests pass using ResourceFinder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5697
diff
changeset
|
840 LOG(WARNING) << "W001: Accessing DICOM tags from storage when accessing " |
|
5665
d8c86698110c
implemented computed tag: Instance Availability
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5641
diff
changeset
|
841 << Orthanc::GetResourceTypeText(resource.GetLevel(), false, false) |
| 5764 | 842 << " " << resource.GetIdentifier() |
|
5665
d8c86698110c
implemented computed tag: Instance Availability
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5641
diff
changeset
|
843 << ": " << missings; |
|
d8c86698110c
implemented computed tag: Instance Availability
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5641
diff
changeset
|
844 } |
|
d8c86698110c
implemented computed tag: Instance Availability
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5641
diff
changeset
|
845 |
|
d8c86698110c
implemented computed tag: Instance Availability
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5641
diff
changeset
|
846 std::string instancePublicId; |
|
d8c86698110c
implemented computed tag: Instance Availability
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5641
diff
changeset
|
847 |
|
d8c86698110c
implemented computed tag: Instance Availability
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5641
diff
changeset
|
848 if (request.IsRetrieveOneInstanceIdentifier()) |
|
d8c86698110c
implemented computed tag: Instance Availability
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5641
diff
changeset
|
849 { |
|
d8c86698110c
implemented computed tag: Instance Availability
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5641
diff
changeset
|
850 instancePublicId = resource.GetOneInstanceIdentifier(); |
|
d8c86698110c
implemented computed tag: Instance Availability
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5641
diff
changeset
|
851 } |
|
d8c86698110c
implemented computed tag: Instance Availability
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5641
diff
changeset
|
852 else if (request.GetLevel() == ResourceType_Instance) |
|
d8c86698110c
implemented computed tag: Instance Availability
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5641
diff
changeset
|
853 { |
|
d8c86698110c
implemented computed tag: Instance Availability
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5641
diff
changeset
|
854 instancePublicId = resource.GetIdentifier(); |
|
d8c86698110c
implemented computed tag: Instance Availability
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5641
diff
changeset
|
855 } |
|
d8c86698110c
implemented computed tag: Instance Availability
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5641
diff
changeset
|
856 else |
|
d8c86698110c
implemented computed tag: Instance Availability
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5641
diff
changeset
|
857 { |
|
d8c86698110c
implemented computed tag: Instance Availability
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5641
diff
changeset
|
858 FindRequest requestDicomAttachment(request.GetLevel()); |
|
d8c86698110c
implemented computed tag: Instance Availability
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5641
diff
changeset
|
859 requestDicomAttachment.SetOrthancId(request.GetLevel(), resource.GetIdentifier()); |
|
d8c86698110c
implemented computed tag: Instance Availability
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5641
diff
changeset
|
860 requestDicomAttachment.SetRetrieveOneInstanceIdentifier(true); |
|
d8c86698110c
implemented computed tag: Instance Availability
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5641
diff
changeset
|
861 |
|
d8c86698110c
implemented computed tag: Instance Availability
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5641
diff
changeset
|
862 FindResponse responseDicomAttachment; |
|
d8c86698110c
implemented computed tag: Instance Availability
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5641
diff
changeset
|
863 context.GetIndex().ExecuteFind(responseDicomAttachment, requestDicomAttachment); |
|
d8c86698110c
implemented computed tag: Instance Availability
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5641
diff
changeset
|
864 |
|
d8c86698110c
implemented computed tag: Instance Availability
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5641
diff
changeset
|
865 if (responseDicomAttachment.GetSize() != 1 || |
|
d8c86698110c
implemented computed tag: Instance Availability
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5641
diff
changeset
|
866 !responseDicomAttachment.GetResourceByIndex(0).HasOneInstanceIdentifier()) |
|
d8c86698110c
implemented computed tag: Instance Availability
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5641
diff
changeset
|
867 { |
|
d8c86698110c
implemented computed tag: Instance Availability
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5641
diff
changeset
|
868 throw OrthancException(ErrorCode_InexistentFile); |
|
d8c86698110c
implemented computed tag: Instance Availability
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5641
diff
changeset
|
869 } |
|
d8c86698110c
implemented computed tag: Instance Availability
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5641
diff
changeset
|
870 else |
|
d8c86698110c
implemented computed tag: Instance Availability
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5641
diff
changeset
|
871 { |
|
d8c86698110c
implemented computed tag: Instance Availability
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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|
872 instancePublicId = responseDicomAttachment.GetResourceByIndex(0).GetOneInstanceIdentifier(); |
|
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|
873 } |
|
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diff
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|
874 } |
|
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diff
changeset
|
875 |
|
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diff
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|
876 LOG(INFO) << "Will retrieve missing DICOM tags from instance: " << instancePublicId; |
|
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diff
changeset
|
877 |
|
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diff
changeset
|
878 // TODO-FIND: What do we do if the DICOM has been removed since the request? |
|
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diff
changeset
|
879 // Do we fail, or do we skip the resource? |
|
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diff
changeset
|
880 |
|
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diff
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|
881 Json::Value tmpDicomAsJson; |
|
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diff
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|
882 context.ReadDicomAsJson(tmpDicomAsJson, instancePublicId, missingTags /* ignoreTagLength */); |
|
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diff
changeset
|
883 |
|
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diff
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|
884 DicomMap tmpDicomMap; |
|
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diff
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|
885 tmpDicomMap.FromDicomAsJson(tmpDicomAsJson, false /* append */, true /* parseSequences*/); |
|
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diff
changeset
|
886 |
|
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diff
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|
887 for (std::set<DicomTag>::const_iterator it = missingTags.begin(); it != missingTags.end(); ++it) |
|
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diff
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|
888 { |
|
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diff
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|
889 assert(!requestedTags.HasTag(*it)); |
|
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diff
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|
890 if (tmpDicomMap.HasTag(*it)) |
|
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diff
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|
891 { |
|
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diff
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|
892 requestedTags.SetValue(*it, tmpDicomMap.GetValue(*it)); |
|
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diff
changeset
|
893 } |
|
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implemented computed tag: Instance Availability
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diff
changeset
|
894 else |
|
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implemented computed tag: Instance Availability
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diff
changeset
|
895 { |
|
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diff
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|
896 requestedTags.SetNullValue(*it); // TODO-FIND: Is this compatible with Orthanc <= 1.12.3? |
|
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diff
changeset
|
897 } |
|
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implemented computed tag: Instance Availability
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diff
changeset
|
898 } |
|
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implemented computed tag: Instance Availability
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diff
changeset
|
899 } |
|
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implemented computed tag: Instance Availability
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diff
changeset
|
900 |
|
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implemented computed tag: Instance Availability
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diff
changeset
|
901 |
|
5688
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diff
changeset
|
902 void ResourceFinder::Execute(IVisitor& visitor, |
|
5621
732ec9feeea8
introduction of FindRequest::ChildrenRetrieveSpecification
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5620
diff
changeset
|
903 ServerContext& context) const |
| 5608 | 904 { |
| 5764 | 905 bool isWarning002Enabled = false; |
| 906 | |
| 907 { | |
| 908 OrthancConfiguration::ReaderLock lock; | |
| 909 isWarning002Enabled = lock.GetConfiguration().IsWarningEnabled(Warnings_002_InconsistentDicomTagsInDb); | |
| 910 } | |
| 911 | |
| 5608 | 912 FindResponse response; |
| 913 context.GetIndex().ExecuteFind(response, request_); | |
| 914 | |
|
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first implementation of database paging
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diff
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|
915 bool complete; |
| 5693 | 916 |
| 917 switch (pagingMode_) | |
|
5688
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first implementation of database paging
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diff
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|
918 { |
| 5693 | 919 case PagingMode_FullDatabase: |
| 920 case PagingMode_ManualSkip: | |
| 921 complete = true; | |
| 922 break; | |
| 923 | |
| 924 case PagingMode_FullManual: | |
| 925 complete = (databaseLimits_ == 0 || | |
| 926 response.GetSize() <= databaseLimits_); | |
| 927 break; | |
| 928 | |
| 929 default: | |
| 930 throw OrthancException(ErrorCode_InternalError); | |
|
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|
931 } |
|
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|
932 |
|
5690
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|
933 if (lookup_.get() != NULL) |
|
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first implementation of database paging
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diff
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|
934 { |
|
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diff
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|
935 LOG(INFO) << "Number of candidate resources after fast DB filtering on main DICOM tags: " << response.GetSize(); |
|
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|
936 } |
|
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first implementation of database paging
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diff
changeset
|
937 |
|
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first implementation of database paging
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diff
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|
938 size_t countResults = 0; |
|
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first implementation of database paging
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diff
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|
939 size_t skipped = 0; |
| 5608 | 940 |
|
5609
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diff
changeset
|
941 for (size_t i = 0; i < response.GetSize(); i++) |
| 5608 | 942 { |
|
5609
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preliminary support of requestedTags
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diff
changeset
|
943 const FindResponse::Resource& resource = response.GetResourceByIndex(i); |
|
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preliminary support of requestedTags
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diff
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|
944 |
|
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|
945 DicomMap requestedTags; |
|
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diff
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|
946 |
|
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integrating DatabaseLookup into ResourceFinder
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|
947 if (hasRequestedTags_) |
| 5608 | 948 { |
|
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integrating DatabaseLookup into ResourceFinder
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diff
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|
949 InjectComputedTags(requestedTags, resource); |
|
5609
4690a0d2b01e
preliminary support of requestedTags
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5608
diff
changeset
|
950 |
|
5686
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integrating DatabaseLookup into ResourceFinder
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diff
changeset
|
951 std::set<DicomTag> missingTags = requestedTagsFromFileStorage_; |
|
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integrating DatabaseLookup into ResourceFinder
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diff
changeset
|
952 InjectRequestedTags(requestedTags, missingTags, resource, ResourceType_Patient, requestedPatientTags_); |
|
11575590e493
integrating DatabaseLookup into ResourceFinder
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|
953 InjectRequestedTags(requestedTags, missingTags, resource, ResourceType_Study, requestedStudyTags_); |
|
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integrating DatabaseLookup into ResourceFinder
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|
954 InjectRequestedTags(requestedTags, missingTags, resource, ResourceType_Series, requestedSeriesTags_); |
|
11575590e493
integrating DatabaseLookup into ResourceFinder
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diff
changeset
|
955 InjectRequestedTags(requestedTags, missingTags, resource, ResourceType_Instance, requestedInstanceTags_); |
|
5609
4690a0d2b01e
preliminary support of requestedTags
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parents:
5608
diff
changeset
|
956 |
|
5686
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integrating DatabaseLookup into ResourceFinder
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diff
changeset
|
957 if (!missingTags.empty()) |
|
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integrating DatabaseLookup into ResourceFinder
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diff
changeset
|
958 { |
|
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integrating DatabaseLookup into ResourceFinder
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diff
changeset
|
959 if (!allowStorageAccess_) |
|
11575590e493
integrating DatabaseLookup into ResourceFinder
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diff
changeset
|
960 { |
|
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integrating DatabaseLookup into ResourceFinder
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diff
changeset
|
961 throw OrthancException(ErrorCode_BadSequenceOfCalls, |
|
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integrating DatabaseLookup into ResourceFinder
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diff
changeset
|
962 "Cannot add missing requested tags, as access to file storage is disallowed"); |
|
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|
963 } |
|
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diff
changeset
|
964 else |
|
5610
d4b570834d3a
adding safeguards around FindRequest::SetRetrieveOneInstanceIdentifier()
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parents:
5609
diff
changeset
|
965 { |
|
5686
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integrating DatabaseLookup into ResourceFinder
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diff
changeset
|
966 ReadMissingTagsFromStorageArea(requestedTags, context, request_, resource, missingTags); |
|
11575590e493
integrating DatabaseLookup into ResourceFinder
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changeset
|
967 } |
|
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integrating DatabaseLookup into ResourceFinder
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diff
changeset
|
968 } |
| 5764 | 969 |
| 970 std::string mainDicomTagsSignature; | |
| 971 if (isWarning002Enabled && | |
| 972 resource.LookupMetadata(mainDicomTagsSignature, resource.GetLevel(), MetadataType_MainDicomTagsSignature) && | |
| 973 mainDicomTagsSignature != DicomMap::GetMainDicomTagsSignature(resource.GetLevel())) | |
| 974 { | |
| 975 LOG(WARNING) << "W002: " << Orthanc::GetResourceTypeText(resource.GetLevel(), false , false) | |
| 976 << " has been stored with another version of Main Dicom Tags list, you should POST to /" | |
| 977 << Orthanc::GetResourceTypeText(resource.GetLevel(), true, false) | |
| 978 << "/" << resource.GetIdentifier() | |
| 979 << "/reconstruct to update the list of tags saved in DB or run the Housekeeper plugin. Some MainDicomTags might be missing from this answer."; | |
| 980 } | |
| 981 | |
|
5686
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integrating DatabaseLookup into ResourceFinder
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diff
changeset
|
982 } |
|
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integrating DatabaseLookup into ResourceFinder
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diff
changeset
|
983 |
|
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integrating DatabaseLookup into ResourceFinder
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changeset
|
984 bool match = true; |
|
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diff
changeset
|
985 |
|
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integrating DatabaseLookup into ResourceFinder
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diff
changeset
|
986 if (lookup_.get() != NULL) |
|
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diff
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|
987 { |
|
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changeset
|
988 DicomMap tags; |
|
5690
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|
989 resource.GetAllMainDicomTags(tags); |
|
5686
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|
990 tags.Merge(requestedTags); |
|
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|
991 match = lookup_->IsMatch(tags); |
|
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|
992 } |
|
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changeset
|
993 |
|
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diff
changeset
|
994 if (match) |
|
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|
995 { |
| 5693 | 996 if (pagingMode_ == PagingMode_FullDatabase) |
|
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changeset
|
997 { |
|
5696
0f8b6214308a
preparing to use ResourceFinder in OrthancFindRequestHandler
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5694
diff
changeset
|
998 visitor.Apply(resource, requestedTags); |
|
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diff
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|
999 } |
|
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|
1000 else |
|
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changeset
|
1001 { |
| 5693 | 1002 if (hasLimitsSince_ && |
|
5688
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|
1003 skipped < limitsSince_) |
|
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|
1004 { |
|
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|
1005 skipped++; |
|
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diff
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|
1006 } |
| 5693 | 1007 else if (hasLimitsCount_ && |
|
5688
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|
1008 countResults >= limitsCount_) |
|
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|
1009 { |
|
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diff
changeset
|
1010 // Too many results, don't mark as complete |
|
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|
1011 complete = false; |
|
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diff
changeset
|
1012 break; |
|
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diff
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|
1013 } |
|
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changeset
|
1014 else |
|
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diff
changeset
|
1015 { |
|
5696
0f8b6214308a
preparing to use ResourceFinder in OrthancFindRequestHandler
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5694
diff
changeset
|
1016 visitor.Apply(resource, requestedTags); |
|
5688
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1017 countResults++; |
|
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1018 } |
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1019 } |
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1020 } |
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1021 } |
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1022 |
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1023 if (complete) |
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1024 { |
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1025 visitor.MarkAsComplete(); |
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1026 } |
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1027 } |
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1028 |
|
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1029 |
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1030 void ResourceFinder::Execute(Json::Value& target, |
|
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1031 ServerContext& context, |
|
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1032 DicomToJsonFormat format, |
|
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1033 bool includeAllMetadata) const |
|
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1034 { |
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1035 class Visitor : public IVisitor |
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1036 { |
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1037 private: |
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1038 const ResourceFinder& that_; |
|
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1039 ServerIndex& index_; |
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1040 Json::Value& target_; |
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1041 DicomToJsonFormat format_; |
|
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1042 bool hasRequestedTags_; |
|
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1043 bool includeAllMetadata_; |
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1044 |
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1045 public: |
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1046 Visitor(const ResourceFinder& that, |
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1047 ServerIndex& index, |
|
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1048 Json::Value& target, |
|
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1049 DicomToJsonFormat format, |
|
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1050 bool hasRequestedTags, |
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1051 bool includeAllMetadata) : |
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1052 that_(that), |
|
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1053 index_(index), |
|
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1054 target_(target), |
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1055 format_(format), |
|
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1056 hasRequestedTags_(hasRequestedTags), |
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1057 includeAllMetadata_(includeAllMetadata) |
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1058 { |
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1059 } |
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1060 |
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1061 virtual void Apply(const FindResponse::Resource& resource, |
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1062 const DicomMap& requestedTags) ORTHANC_OVERRIDE |
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1063 { |
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1064 if (that_.expand_) |
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1065 { |
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1066 Json::Value item; |
|
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1067 that_.Expand(item, resource, index_, format_, includeAllMetadata_); |
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1068 |
|
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1069 if (hasRequestedTags_) |
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1070 { |
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1071 static const char* const REQUESTED_TAGS = "RequestedTags"; |
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1072 item[REQUESTED_TAGS] = Json::objectValue; |
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1073 FromDcmtkBridge::ToJson(item[REQUESTED_TAGS], requestedTags, format_); |
|
5609
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1074 } |
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1075 |
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1076 target_.append(item); |
|
5609
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|
1077 } |
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1078 else |
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|
1079 { |
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1080 target_.append(resource.GetIdentifier()); |
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1081 } |
| 5608 | 1082 } |
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|
1083 |
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1084 virtual void MarkAsComplete() ORTHANC_OVERRIDE |
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1085 { |
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1086 } |
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1087 }; |
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1088 |
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1089 target = Json::arrayValue; |
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1090 |
|
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|
1091 Visitor visitor(*this, context.GetIndex(), target, format, hasRequestedTags_, includeAllMetadata); |
|
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1092 Execute(visitor, context); |
| 5608 | 1093 } |
|
5615
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|
1094 |
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|
1095 |
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|
1096 bool ResourceFinder::ExecuteOneResource(Json::Value& target, |
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|
1097 ServerContext& context, |
|
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|
1098 DicomToJsonFormat format, |
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|
1099 bool includeAllMetadata) const |
|
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1100 { |
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|
1101 Json::Value answer; |
|
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|
1102 Execute(answer, context, format, includeAllMetadata); |
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|
1103 |
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1104 if (answer.type() != Json::arrayValue) |
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1105 { |
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1106 throw OrthancException(ErrorCode_InternalError); |
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1107 } |
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1108 else if (answer.size() > 1) |
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|
1109 { |
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1110 throw OrthancException(ErrorCode_DatabasePlugin); |
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1111 } |
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1112 else if (answer.empty()) |
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1113 { |
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1114 // Inexistent resource (or was deleted between the first and second phases) |
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1115 return false; |
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1116 } |
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1117 else |
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|
1118 { |
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1119 target = answer[0]; |
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1120 return true; |
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1121 } |
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1122 } |
| 5608 | 1123 } |