Mercurial > hg > orthanc

annotate OrthancServer/Sources/DicomInstanceToStore.cpp @ 5638:4535194cbb8a

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
document TLS 1.3 in SslMinimumProtocolVersion
author Alain Mazy <am@orthanc.team>
date Wed, 22 May 2024 16:06:30 +0200
parents 790335c99713
children f7adfb22e20e
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
1003
1d35281d967c DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1 /**
1d35281d967c DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
2 * Orthanc - A Lightweight, RESTful DICOM Store
1900
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1854
diff changeset
3 * Copyright (C) 2012-2016 Sebastien Jodogne, Medical Physics
1288
6e7e5ed91c2d upgrade to year 2015
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1005
diff changeset
4 * Department, University Hospital of Liege, Belgium
5485
48b8dae6dc77 upgrade to year 2024
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5185
diff changeset
5 * Copyright (C) 2017-2024 Osimis S.A., Belgium
48b8dae6dc77 upgrade to year 2024
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5185
diff changeset
6 * Copyright (C) 2021-2024 Sebastien Jodogne, ICTEAM UCLouvain, Belgium
1003
1d35281d967c DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
7 *
1d35281d967c DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
8 * This program is free software: you can redistribute it and/or
1d35281d967c DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
9 * modify it under the terms of the GNU General Public License as
1d35281d967c DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
10 * published by the Free Software Foundation, either version 3 of the
1d35281d967c DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
11 * License, or (at your option) any later version.
1d35281d967c DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
12 *
1d35281d967c DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
13 * This program is distributed in the hope that it will be useful, but
1d35281d967c DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
14 * WITHOUT ANY WARRANTY; without even the implied warranty of
1d35281d967c DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
15 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
1d35281d967c DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
16 * General Public License for more details.
1d35281d967c DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
17 *
1d35281d967c DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
18 * You should have received a copy of the GNU General Public License
1d35281d967c DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
19 * along with this program. If not, see <http://www.gnu.org/licenses/>.
1d35281d967c DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
20 **/
1d35281d967c DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
21
1d35281d967c DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
22
1624
0a2ad4a6858f fix missing precompiled headers
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1573
diff changeset
23 #include "PrecompiledHeadersServer.h"
1003
1d35281d967c DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
24 #include "DicomInstanceToStore.h"
1d35281d967c DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
25
4140
0ddc5297a8ab centralization of default parameters for JSON/DicomMap conversions from DCMTK
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4137
diff changeset
26 #include "OrthancConfiguration.h"
0ddc5297a8ab centralization of default parameters for JSON/DicomMap conversions from DCMTK
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4137
diff changeset
27
4045
05b8fd21089c fix path
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4044
diff changeset
28 #include "../../OrthancFramework/Sources/DicomParsing/FromDcmtkBridge.h"
4508
8f9090b137f1 Optimization in C-STORE SCP by avoiding an unnecessary DICOM parsing
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4507
diff changeset
29 #include "../../OrthancFramework/Sources/DicomParsing/Internals/DicomFrameIndex.h"
8f9090b137f1 Optimization in C-STORE SCP by avoiding an unnecessary DICOM parsing
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4507
diff changeset
30 #include "../../OrthancFramework/Sources/DicomParsing/Internals/DicomImageDecoder.h"
4045
05b8fd21089c fix path
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4044
diff changeset
31 #include "../../OrthancFramework/Sources/DicomParsing/ParsedDicomFile.h"
05b8fd21089c fix path
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4044
diff changeset
32 #include "../../OrthancFramework/Sources/Logging.h"
05b8fd21089c fix path
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4044
diff changeset
33 #include "../../OrthancFramework/Sources/OrthancException.h"
1004
a226e0959d8b DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1003
diff changeset
34
a226e0959d8b DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1003
diff changeset
35 #include <dcmtk/dcmdata/dcfilefo.h>
2189
c4b3259c8bce New metadata automatically computed at the instance level: "TransferSyntax"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2131
diff changeset
36 #include <dcmtk/dcmdata/dcdeftag.h>
1004
a226e0959d8b DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1003
diff changeset
37
a226e0959d8b DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1003
diff changeset
38
1003
1d35281d967c DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
39 namespace Orthanc
1d35281d967c DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
40 {
4508
8f9090b137f1 Optimization in C-STORE SCP by avoiding an unnecessary DICOM parsing
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4507
diff changeset
41 class DicomInstanceToStore::FromBuffer : public DicomInstanceToStore
2894
a27b0e9a3fd9 refactoring DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2640
diff changeset
42 {
4508
8f9090b137f1 Optimization in C-STORE SCP by avoiding an unnecessary DICOM parsing
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4507
diff changeset
43 private:
8f9090b137f1 Optimization in C-STORE SCP by avoiding an unnecessary DICOM parsing
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4507
diff changeset
44 const void* buffer_;
8f9090b137f1 Optimization in C-STORE SCP by avoiding an unnecessary DICOM parsing
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4507
diff changeset
45 size_t size_;
8f9090b137f1 Optimization in C-STORE SCP by avoiding an unnecessary DICOM parsing
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4507
diff changeset
46 std::unique_ptr<ParsedDicomFile> parsed_;
2894
a27b0e9a3fd9 refactoring DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2640
diff changeset
47
2898
e5e3253a1164 DicomInstanceToStore::GetHasher()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2894
diff changeset
48 public:
4508
8f9090b137f1 Optimization in C-STORE SCP by avoiding an unnecessary DICOM parsing
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4507
diff changeset
49 FromBuffer(const void* buffer,
8f9090b137f1 Optimization in C-STORE SCP by avoiding an unnecessary DICOM parsing
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4507
diff changeset
50 size_t size) :
8f9090b137f1 Optimization in C-STORE SCP by avoiding an unnecessary DICOM parsing
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4507
diff changeset
51 buffer_(buffer),
8f9090b137f1 Optimization in C-STORE SCP by avoiding an unnecessary DICOM parsing
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4507
diff changeset
52 size_(size)
3841
be7df7fe3d80 avoid one memcpy of the DICOM buffer on "POST /instances"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3712
diff changeset
53 {
be7df7fe3d80 avoid one memcpy of the DICOM buffer on "POST /instances"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3712
diff changeset
54 }
be7df7fe3d80 avoid one memcpy of the DICOM buffer on "POST /instances"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3712
diff changeset
55
4508
8f9090b137f1 Optimization in C-STORE SCP by avoiding an unnecessary DICOM parsing
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4507
diff changeset
56 virtual ParsedDicomFile& GetParsedDicomFile() const ORTHANC_OVERRIDE
8f9090b137f1 Optimization in C-STORE SCP by avoiding an unnecessary DICOM parsing
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4507
diff changeset
57 {
8f9090b137f1 Optimization in C-STORE SCP by avoiding an unnecessary DICOM parsing
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4507
diff changeset
58 if (parsed_.get() == NULL)
8f9090b137f1 Optimization in C-STORE SCP by avoiding an unnecessary DICOM parsing
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4507
diff changeset
59 {
8f9090b137f1 Optimization in C-STORE SCP by avoiding an unnecessary DICOM parsing
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4507
diff changeset
60 const_cast<FromBuffer&>(*this).parsed_.reset(new ParsedDicomFile(buffer_, size_));
8f9090b137f1 Optimization in C-STORE SCP by avoiding an unnecessary DICOM parsing
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4507
diff changeset
61 }
8f9090b137f1 Optimization in C-STORE SCP by avoiding an unnecessary DICOM parsing
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4507
diff changeset
62
8f9090b137f1 Optimization in C-STORE SCP by avoiding an unnecessary DICOM parsing
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4507
diff changeset
63 return *parsed_;
8f9090b137f1 Optimization in C-STORE SCP by avoiding an unnecessary DICOM parsing
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4507
diff changeset
64 }
8f9090b137f1 Optimization in C-STORE SCP by avoiding an unnecessary DICOM parsing
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4507
diff changeset
65
8f9090b137f1 Optimization in C-STORE SCP by avoiding an unnecessary DICOM parsing
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4507
diff changeset
66 virtual const void* GetBufferData() const ORTHANC_OVERRIDE
8f9090b137f1 Optimization in C-STORE SCP by avoiding an unnecessary DICOM parsing
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4507
diff changeset
67 {
8f9090b137f1 Optimization in C-STORE SCP by avoiding an unnecessary DICOM parsing
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4507
diff changeset
68 return buffer_;
8f9090b137f1 Optimization in C-STORE SCP by avoiding an unnecessary DICOM parsing
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4507
diff changeset
69 }
8f9090b137f1 Optimization in C-STORE SCP by avoiding an unnecessary DICOM parsing
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4507
diff changeset
70
8f9090b137f1 Optimization in C-STORE SCP by avoiding an unnecessary DICOM parsing
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4507
diff changeset
71 virtual size_t GetBufferSize() const ORTHANC_OVERRIDE
8f9090b137f1 Optimization in C-STORE SCP by avoiding an unnecessary DICOM parsing
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4507
diff changeset
72 {
8f9090b137f1 Optimization in C-STORE SCP by avoiding an unnecessary DICOM parsing
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4507
diff changeset
73 return size_;
8f9090b137f1 Optimization in C-STORE SCP by avoiding an unnecessary DICOM parsing
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4507
diff changeset
74 }
8f9090b137f1 Optimization in C-STORE SCP by avoiding an unnecessary DICOM parsing
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4507
diff changeset
75 };
8f9090b137f1 Optimization in C-STORE SCP by avoiding an unnecessary DICOM parsing
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4507
diff changeset
76
8f9090b137f1 Optimization in C-STORE SCP by avoiding an unnecessary DICOM parsing
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4507
diff changeset
77
8f9090b137f1 Optimization in C-STORE SCP by avoiding an unnecessary DICOM parsing
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4507
diff changeset
78 class DicomInstanceToStore::FromParsedDicomFile : public DicomInstanceToStore
8f9090b137f1 Optimization in C-STORE SCP by avoiding an unnecessary DICOM parsing
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4507
diff changeset
79 {
2898
e5e3253a1164 DicomInstanceToStore::GetHasher()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2894
diff changeset
80 private:
4508
8f9090b137f1 Optimization in C-STORE SCP by avoiding an unnecessary DICOM parsing
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4507
diff changeset
81 ParsedDicomFile& parsed_;
8f9090b137f1 Optimization in C-STORE SCP by avoiding an unnecessary DICOM parsing
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4507
diff changeset
82 std::unique_ptr<std::string> buffer_;
8f9090b137f1 Optimization in C-STORE SCP by avoiding an unnecessary DICOM parsing
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4507
diff changeset
83
8f9090b137f1 Optimization in C-STORE SCP by avoiding an unnecessary DICOM parsing
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4507
diff changeset
84 void SerializeToBuffer()
3845
281045a1e6db new "info" field in "ReceivedInstanceFilter()" callback
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3841
diff changeset
85 {
4508
8f9090b137f1 Optimization in C-STORE SCP by avoiding an unnecessary DICOM parsing
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4507
diff changeset
86 if (buffer_.get() == NULL)
3845
281045a1e6db new "info" field in "ReceivedInstanceFilter()" callback
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3841
diff changeset
87 {
4508
8f9090b137f1 Optimization in C-STORE SCP by avoiding an unnecessary DICOM parsing
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4507
diff changeset
88 buffer_.reset(new std::string);
8f9090b137f1 Optimization in C-STORE SCP by avoiding an unnecessary DICOM parsing
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4507
diff changeset
89 parsed_.SaveToMemoryBuffer(*buffer_);
8f9090b137f1 Optimization in C-STORE SCP by avoiding an unnecessary DICOM parsing
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4507
diff changeset
90 }
8f9090b137f1 Optimization in C-STORE SCP by avoiding an unnecessary DICOM parsing
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4507
diff changeset
91 }
8f9090b137f1 Optimization in C-STORE SCP by avoiding an unnecessary DICOM parsing
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4507
diff changeset
92
8f9090b137f1 Optimization in C-STORE SCP by avoiding an unnecessary DICOM parsing
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4507
diff changeset
93 public:
4519
a3c6678aa7b1 cppcheck
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4508
diff changeset
94 explicit FromParsedDicomFile(ParsedDicomFile& parsed) :
4508
8f9090b137f1 Optimization in C-STORE SCP by avoiding an unnecessary DICOM parsing
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4507
diff changeset
95 parsed_(parsed)
8f9090b137f1 Optimization in C-STORE SCP by avoiding an unnecessary DICOM parsing
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4507
diff changeset
96 {
8f9090b137f1 Optimization in C-STORE SCP by avoiding an unnecessary DICOM parsing
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4507
diff changeset
97 }
8f9090b137f1 Optimization in C-STORE SCP by avoiding an unnecessary DICOM parsing
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4507
diff changeset
98
8f9090b137f1 Optimization in C-STORE SCP by avoiding an unnecessary DICOM parsing
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4507
diff changeset
99 virtual ParsedDicomFile& GetParsedDicomFile() const ORTHANC_OVERRIDE
8f9090b137f1 Optimization in C-STORE SCP by avoiding an unnecessary DICOM parsing
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4507
diff changeset
100 {
8f9090b137f1 Optimization in C-STORE SCP by avoiding an unnecessary DICOM parsing
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4507
diff changeset
101 return parsed_;
8f9090b137f1 Optimization in C-STORE SCP by avoiding an unnecessary DICOM parsing
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4507
diff changeset
102 }
8f9090b137f1 Optimization in C-STORE SCP by avoiding an unnecessary DICOM parsing
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4507
diff changeset
103
8f9090b137f1 Optimization in C-STORE SCP by avoiding an unnecessary DICOM parsing
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4507
diff changeset
104 virtual const void* GetBufferData() const ORTHANC_OVERRIDE
8f9090b137f1 Optimization in C-STORE SCP by avoiding an unnecessary DICOM parsing
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4507
diff changeset
105 {
8f9090b137f1 Optimization in C-STORE SCP by avoiding an unnecessary DICOM parsing
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4507
diff changeset
106 const_cast<FromParsedDicomFile&>(*this).SerializeToBuffer();
8f9090b137f1 Optimization in C-STORE SCP by avoiding an unnecessary DICOM parsing
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4507
diff changeset
107
8f9090b137f1 Optimization in C-STORE SCP by avoiding an unnecessary DICOM parsing
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4507
diff changeset
108 assert(buffer_.get() != NULL);
8f9090b137f1 Optimization in C-STORE SCP by avoiding an unnecessary DICOM parsing
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4507
diff changeset
109 return (buffer_->empty() ? NULL : buffer_->c_str());
8f9090b137f1 Optimization in C-STORE SCP by avoiding an unnecessary DICOM parsing
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4507
diff changeset
110 }
8f9090b137f1 Optimization in C-STORE SCP by avoiding an unnecessary DICOM parsing
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4507
diff changeset
111
8f9090b137f1 Optimization in C-STORE SCP by avoiding an unnecessary DICOM parsing
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4507
diff changeset
112 virtual size_t GetBufferSize() const ORTHANC_OVERRIDE
8f9090b137f1 Optimization in C-STORE SCP by avoiding an unnecessary DICOM parsing
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4507
diff changeset
113 {
8f9090b137f1 Optimization in C-STORE SCP by avoiding an unnecessary DICOM parsing
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4507
diff changeset
114 const_cast<FromParsedDicomFile&>(*this).SerializeToBuffer();
8f9090b137f1 Optimization in C-STORE SCP by avoiding an unnecessary DICOM parsing
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4507
diff changeset
115
8f9090b137f1 Optimization in C-STORE SCP by avoiding an unnecessary DICOM parsing
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4507
diff changeset
116 assert(buffer_.get() != NULL);
8f9090b137f1 Optimization in C-STORE SCP by avoiding an unnecessary DICOM parsing
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4507
diff changeset
117 return buffer_->size();
8f9090b137f1 Optimization in C-STORE SCP by avoiding an unnecessary DICOM parsing
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4507
diff changeset
118 }
8f9090b137f1 Optimization in C-STORE SCP by avoiding an unnecessary DICOM parsing
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4507
diff changeset
119 };
8f9090b137f1 Optimization in C-STORE SCP by avoiding an unnecessary DICOM parsing
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4507
diff changeset
120
8f9090b137f1 Optimization in C-STORE SCP by avoiding an unnecessary DICOM parsing
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4507
diff changeset
121
8f9090b137f1 Optimization in C-STORE SCP by avoiding an unnecessary DICOM parsing
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4507
diff changeset
122 class DicomInstanceToStore::FromDcmDataset : public DicomInstanceToStore
8f9090b137f1 Optimization in C-STORE SCP by avoiding an unnecessary DICOM parsing
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4507
diff changeset
123 {
8f9090b137f1 Optimization in C-STORE SCP by avoiding an unnecessary DICOM parsing
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4507
diff changeset
124 private:
8f9090b137f1 Optimization in C-STORE SCP by avoiding an unnecessary DICOM parsing
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4507
diff changeset
125 DcmDataset& dataset_;
8f9090b137f1 Optimization in C-STORE SCP by avoiding an unnecessary DICOM parsing
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4507
diff changeset
126 std::unique_ptr<std::string> buffer_;
8f9090b137f1 Optimization in C-STORE SCP by avoiding an unnecessary DICOM parsing
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4507
diff changeset
127 std::unique_ptr<ParsedDicomFile> parsed_;
8f9090b137f1 Optimization in C-STORE SCP by avoiding an unnecessary DICOM parsing
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4507
diff changeset
128
8f9090b137f1 Optimization in C-STORE SCP by avoiding an unnecessary DICOM parsing
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4507
diff changeset
129 void SerializeToBuffer()
8f9090b137f1 Optimization in C-STORE SCP by avoiding an unnecessary DICOM parsing
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4507
diff changeset
130 {
8f9090b137f1 Optimization in C-STORE SCP by avoiding an unnecessary DICOM parsing
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4507
diff changeset
131 if (buffer_.get() == NULL)
8f9090b137f1 Optimization in C-STORE SCP by avoiding an unnecessary DICOM parsing
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4507
diff changeset
132 {
8f9090b137f1 Optimization in C-STORE SCP by avoiding an unnecessary DICOM parsing
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4507
diff changeset
133 buffer_.reset(new std::string);
8f9090b137f1 Optimization in C-STORE SCP by avoiding an unnecessary DICOM parsing
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4507
diff changeset
134
5624
790335c99713 more detailed error message for 'Cannot write DICOM file to memory'
Alain Mazy <am@orthanc.team>
parents: 5485
diff changeset
135 std::string errorMessage;
790335c99713 more detailed error message for 'Cannot write DICOM file to memory'
Alain Mazy <am@orthanc.team>
parents: 5485
diff changeset
136 if (!FromDcmtkBridge::SaveToMemoryBuffer(*buffer_, dataset_, errorMessage))
3845
281045a1e6db new "info" field in "ReceivedInstanceFilter()" callback
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3841
diff changeset
137 {
5624
790335c99713 more detailed error message for 'Cannot write DICOM file to memory'
Alain Mazy <am@orthanc.team>
parents: 5485
diff changeset
138 throw OrthancException(ErrorCode_InternalError, "Cannot write DICOM file to memory: " + errorMessage);
3845
281045a1e6db new "info" field in "ReceivedInstanceFilter()" callback
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3841
diff changeset
139 }
281045a1e6db new "info" field in "ReceivedInstanceFilter()" callback
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3841
diff changeset
140 }
281045a1e6db new "info" field in "ReceivedInstanceFilter()" callback
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3841
diff changeset
141 }
281045a1e6db new "info" field in "ReceivedInstanceFilter()" callback
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3841
diff changeset
142
4508
8f9090b137f1 Optimization in C-STORE SCP by avoiding an unnecessary DICOM parsing
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4507
diff changeset
143 public:
4519
a3c6678aa7b1 cppcheck
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4508
diff changeset
144 explicit FromDcmDataset(DcmDataset& dataset) :
4508
8f9090b137f1 Optimization in C-STORE SCP by avoiding an unnecessary DICOM parsing
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4507
diff changeset
145 dataset_(dataset)
2894
a27b0e9a3fd9 refactoring DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2640
diff changeset
146 {
4508
8f9090b137f1 Optimization in C-STORE SCP by avoiding an unnecessary DICOM parsing
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4507
diff changeset
147 }
8f9090b137f1 Optimization in C-STORE SCP by avoiding an unnecessary DICOM parsing
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4507
diff changeset
148
8f9090b137f1 Optimization in C-STORE SCP by avoiding an unnecessary DICOM parsing
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4507
diff changeset
149 virtual ParsedDicomFile& GetParsedDicomFile() const ORTHANC_OVERRIDE
8f9090b137f1 Optimization in C-STORE SCP by avoiding an unnecessary DICOM parsing
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4507
diff changeset
150 {
8f9090b137f1 Optimization in C-STORE SCP by avoiding an unnecessary DICOM parsing
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4507
diff changeset
151 if (parsed_.get() == NULL)
2894
a27b0e9a3fd9 refactoring DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2640
diff changeset
152 {
4508
8f9090b137f1 Optimization in C-STORE SCP by avoiding an unnecessary DICOM parsing
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4507
diff changeset
153 // This operation is costly, as it creates a clone of the
8f9090b137f1 Optimization in C-STORE SCP by avoiding an unnecessary DICOM parsing
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4507
diff changeset
154 // dataset. This explains why the default implementations
8f9090b137f1 Optimization in C-STORE SCP by avoiding an unnecessary DICOM parsing
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4507
diff changeset
155 // are overridden below to use "dataset_" as much as possible
8f9090b137f1 Optimization in C-STORE SCP by avoiding an unnecessary DICOM parsing
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4507
diff changeset
156 const_cast<FromDcmDataset&>(*this).parsed_.reset(new ParsedDicomFile(dataset_));
8f9090b137f1 Optimization in C-STORE SCP by avoiding an unnecessary DICOM parsing
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4507
diff changeset
157 }
2894
a27b0e9a3fd9 refactoring DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2640
diff changeset
158
4508
8f9090b137f1 Optimization in C-STORE SCP by avoiding an unnecessary DICOM parsing
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4507
diff changeset
159 return *parsed_;
2894
a27b0e9a3fd9 refactoring DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2640
diff changeset
160 }
a27b0e9a3fd9 refactoring DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2640
diff changeset
161
4508
8f9090b137f1 Optimization in C-STORE SCP by avoiding an unnecessary DICOM parsing
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4507
diff changeset
162 virtual const void* GetBufferData() const ORTHANC_OVERRIDE
3841
be7df7fe3d80 avoid one memcpy of the DICOM buffer on "POST /instances"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3712
diff changeset
163 {
4508
8f9090b137f1 Optimization in C-STORE SCP by avoiding an unnecessary DICOM parsing
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4507
diff changeset
164 const_cast<FromDcmDataset&>(*this).SerializeToBuffer();
3841
be7df7fe3d80 avoid one memcpy of the DICOM buffer on "POST /instances"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3712
diff changeset
165
4508
8f9090b137f1 Optimization in C-STORE SCP by avoiding an unnecessary DICOM parsing
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4507
diff changeset
166 assert(buffer_.get() != NULL);
8f9090b137f1 Optimization in C-STORE SCP by avoiding an unnecessary DICOM parsing
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4507
diff changeset
167 return (buffer_->empty() ? NULL : buffer_->c_str());
8f9090b137f1 Optimization in C-STORE SCP by avoiding an unnecessary DICOM parsing
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4507
diff changeset
168 }
2894
a27b0e9a3fd9 refactoring DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2640
diff changeset
169
4508
8f9090b137f1 Optimization in C-STORE SCP by avoiding an unnecessary DICOM parsing
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4507
diff changeset
170 virtual size_t GetBufferSize() const ORTHANC_OVERRIDE
8f9090b137f1 Optimization in C-STORE SCP by avoiding an unnecessary DICOM parsing
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4507
diff changeset
171 {
8f9090b137f1 Optimization in C-STORE SCP by avoiding an unnecessary DICOM parsing
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4507
diff changeset
172 const_cast<FromDcmDataset&>(*this).SerializeToBuffer();
8f9090b137f1 Optimization in C-STORE SCP by avoiding an unnecessary DICOM parsing
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4507
diff changeset
173
8f9090b137f1 Optimization in C-STORE SCP by avoiding an unnecessary DICOM parsing
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4507
diff changeset
174 assert(buffer_.get() != NULL);
8f9090b137f1 Optimization in C-STORE SCP by avoiding an unnecessary DICOM parsing
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4507
diff changeset
175 return buffer_->size();
2894
a27b0e9a3fd9 refactoring DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2640
diff changeset
176 }
a27b0e9a3fd9 refactoring DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2640
diff changeset
177
4508
8f9090b137f1 Optimization in C-STORE SCP by avoiding an unnecessary DICOM parsing
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4507
diff changeset
178 virtual bool HasPixelData() const ORTHANC_OVERRIDE
2894
a27b0e9a3fd9 refactoring DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2640
diff changeset
179 {
4508
8f9090b137f1 Optimization in C-STORE SCP by avoiding an unnecessary DICOM parsing
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4507
diff changeset
180 DcmTag key(DICOM_TAG_PIXEL_DATA.GetGroup(),
8f9090b137f1 Optimization in C-STORE SCP by avoiding an unnecessary DICOM parsing
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4507
diff changeset
181 DICOM_TAG_PIXEL_DATA.GetElement());
8f9090b137f1 Optimization in C-STORE SCP by avoiding an unnecessary DICOM parsing
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4507
diff changeset
182 return dataset_.tagExists(key);
8f9090b137f1 Optimization in C-STORE SCP by avoiding an unnecessary DICOM parsing
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4507
diff changeset
183 }
2894
a27b0e9a3fd9 refactoring DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2640
diff changeset
184
4508
8f9090b137f1 Optimization in C-STORE SCP by avoiding an unnecessary DICOM parsing
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4507
diff changeset
185 virtual void GetSummary(DicomMap& summary) const ORTHANC_OVERRIDE
8f9090b137f1 Optimization in C-STORE SCP by avoiding an unnecessary DICOM parsing
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4507
diff changeset
186 {
8f9090b137f1 Optimization in C-STORE SCP by avoiding an unnecessary DICOM parsing
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4507
diff changeset
187 OrthancConfiguration::DefaultExtractDicomSummary(summary, dataset_);
8f9090b137f1 Optimization in C-STORE SCP by avoiding an unnecessary DICOM parsing
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4507
diff changeset
188 }
8f9090b137f1 Optimization in C-STORE SCP by avoiding an unnecessary DICOM parsing
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4507
diff changeset
189
5036
877bc3b96476 Handle Dicom sequences in ExtraMainDicomTags and save them in the 'MainDicomSequences' metadata
Alain Mazy <am@osimis.io>
parents: 4988
diff changeset
190 virtual void GetDicomAsJson(Json::Value& dicomAsJson, const std::set<DicomTag>& ignoreTagLength) const ORTHANC_OVERRIDE
4508
8f9090b137f1 Optimization in C-STORE SCP by avoiding an unnecessary DICOM parsing
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4507
diff changeset
191 {
5036
877bc3b96476 Handle Dicom sequences in ExtraMainDicomTags and save them in the 'MainDicomSequences' metadata
Alain Mazy <am@osimis.io>
parents: 4988
diff changeset
192 OrthancConfiguration::DefaultDicomDatasetToJson(dicomAsJson, dataset_, ignoreTagLength);
2894
a27b0e9a3fd9 refactoring DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2640
diff changeset
193 }
a27b0e9a3fd9 refactoring DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2640
diff changeset
194
4508
8f9090b137f1 Optimization in C-STORE SCP by avoiding an unnecessary DICOM parsing
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4507
diff changeset
195 virtual void DatasetToJson(Json::Value& target,
8f9090b137f1 Optimization in C-STORE SCP by avoiding an unnecessary DICOM parsing
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4507
diff changeset
196 DicomToJsonFormat format,
8f9090b137f1 Optimization in C-STORE SCP by avoiding an unnecessary DICOM parsing
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4507
diff changeset
197 DicomToJsonFlags flags,
8f9090b137f1 Optimization in C-STORE SCP by avoiding an unnecessary DICOM parsing
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4507
diff changeset
198 unsigned int maxStringLength) const ORTHANC_OVERRIDE
2894
a27b0e9a3fd9 refactoring DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2640
diff changeset
199 {
4508
8f9090b137f1 Optimization in C-STORE SCP by avoiding an unnecessary DICOM parsing
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4507
diff changeset
200 std::set<DicomTag> ignoreTagLength;
8f9090b137f1 Optimization in C-STORE SCP by avoiding an unnecessary DICOM parsing
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4507
diff changeset
201 FromDcmtkBridge::ExtractDicomAsJson(
8f9090b137f1 Optimization in C-STORE SCP by avoiding an unnecessary DICOM parsing
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4507
diff changeset
202 target, dataset_, format, flags, maxStringLength, ignoreTagLength);
2894
a27b0e9a3fd9 refactoring DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2640
diff changeset
203 }
3845
281045a1e6db new "info" field in "ReceivedInstanceFilter()" callback
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3841
diff changeset
204
4508
8f9090b137f1 Optimization in C-STORE SCP by avoiding an unnecessary DICOM parsing
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4507
diff changeset
205 virtual unsigned int GetFramesCount() const ORTHANC_OVERRIDE
3845
281045a1e6db new "info" field in "ReceivedInstanceFilter()" callback
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3841
diff changeset
206 {
4508
8f9090b137f1 Optimization in C-STORE SCP by avoiding an unnecessary DICOM parsing
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4507
diff changeset
207 return DicomFrameIndex::GetFramesCount(dataset_);
8f9090b137f1 Optimization in C-STORE SCP by avoiding an unnecessary DICOM parsing
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4507
diff changeset
208 }
8f9090b137f1 Optimization in C-STORE SCP by avoiding an unnecessary DICOM parsing
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4507
diff changeset
209
8f9090b137f1 Optimization in C-STORE SCP by avoiding an unnecessary DICOM parsing
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4507
diff changeset
210 virtual ImageAccessor* DecodeFrame(unsigned int frame) const ORTHANC_OVERRIDE
8f9090b137f1 Optimization in C-STORE SCP by avoiding an unnecessary DICOM parsing
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4507
diff changeset
211 {
8f9090b137f1 Optimization in C-STORE SCP by avoiding an unnecessary DICOM parsing
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4507
diff changeset
212 return DicomImageDecoder::Decode(dataset_, frame);
3845
281045a1e6db new "info" field in "ReceivedInstanceFilter()" callback
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3841
diff changeset
213 }
2894
a27b0e9a3fd9 refactoring DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2640
diff changeset
214 };
a27b0e9a3fd9 refactoring DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2640
diff changeset
215
4508
8f9090b137f1 Optimization in C-STORE SCP by avoiding an unnecessary DICOM parsing
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4507
diff changeset
216
8f9090b137f1 Optimization in C-STORE SCP by avoiding an unnecessary DICOM parsing
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4507
diff changeset
217 DicomInstanceToStore* DicomInstanceToStore::CreateFromBuffer(const void* buffer,
8f9090b137f1 Optimization in C-STORE SCP by avoiding an unnecessary DICOM parsing
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4507
diff changeset
218 size_t size)
2894
a27b0e9a3fd9 refactoring DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2640
diff changeset
219 {
4508
8f9090b137f1 Optimization in C-STORE SCP by avoiding an unnecessary DICOM parsing
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4507
diff changeset
220 return new FromBuffer(buffer, size);
2894
a27b0e9a3fd9 refactoring DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2640
diff changeset
221 }
a27b0e9a3fd9 refactoring DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2640
diff changeset
222
4508
8f9090b137f1 Optimization in C-STORE SCP by avoiding an unnecessary DICOM parsing
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4507
diff changeset
223
8f9090b137f1 Optimization in C-STORE SCP by avoiding an unnecessary DICOM parsing
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4507
diff changeset
224 DicomInstanceToStore* DicomInstanceToStore::CreateFromBuffer(const std::string& buffer)
2894
a27b0e9a3fd9 refactoring DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2640
diff changeset
225 {
4508
8f9090b137f1 Optimization in C-STORE SCP by avoiding an unnecessary DICOM parsing
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4507
diff changeset
226 return new FromBuffer(buffer.empty() ? NULL : buffer.c_str(), buffer.size());
2894
a27b0e9a3fd9 refactoring DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2640
diff changeset
227 }
a27b0e9a3fd9 refactoring DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2640
diff changeset
228
a27b0e9a3fd9 refactoring DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2640
diff changeset
229
4508
8f9090b137f1 Optimization in C-STORE SCP by avoiding an unnecessary DICOM parsing
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4507
diff changeset
230 DicomInstanceToStore* DicomInstanceToStore::CreateFromParsedDicomFile(ParsedDicomFile& dicom)
2894
a27b0e9a3fd9 refactoring DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2640
diff changeset
231 {
4508
8f9090b137f1 Optimization in C-STORE SCP by avoiding an unnecessary DICOM parsing
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4507
diff changeset
232 return new FromParsedDicomFile(dicom);
2894
a27b0e9a3fd9 refactoring DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2640
diff changeset
233 }
a27b0e9a3fd9 refactoring DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2640
diff changeset
234
4508
8f9090b137f1 Optimization in C-STORE SCP by avoiding an unnecessary DICOM parsing
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4507
diff changeset
235
8f9090b137f1 Optimization in C-STORE SCP by avoiding an unnecessary DICOM parsing
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4507
diff changeset
236 DicomInstanceToStore* DicomInstanceToStore::CreateFromDcmDataset(DcmDataset& dataset)
2894
a27b0e9a3fd9 refactoring DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2640
diff changeset
237 {
4508
8f9090b137f1 Optimization in C-STORE SCP by avoiding an unnecessary DICOM parsing
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4507
diff changeset
238 return new FromDcmDataset(dataset);
2894
a27b0e9a3fd9 refactoring DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2640
diff changeset
239 }
a27b0e9a3fd9 refactoring DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2640
diff changeset
240
4508
8f9090b137f1 Optimization in C-STORE SCP by avoiding an unnecessary DICOM parsing
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4507
diff changeset
241
4507
b4c58795f3a8 widening the use of DicomTransferSyntax enum
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4506
diff changeset
242 bool DicomInstanceToStore::LookupTransferSyntax(DicomTransferSyntax& result) const
2189
c4b3259c8bce New metadata automatically computed at the instance level: "TransferSyntax"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2131
diff changeset
243 {
4508
8f9090b137f1 Optimization in C-STORE SCP by avoiding an unnecessary DICOM parsing
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4507
diff changeset
244 DicomMap header;
8f9090b137f1 Optimization in C-STORE SCP by avoiding an unnecessary DICOM parsing
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4507
diff changeset
245 if (DicomMap::ParseDicomMetaInformation(header, GetBufferData(), GetBufferSize()))
8f9090b137f1 Optimization in C-STORE SCP by avoiding an unnecessary DICOM parsing
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4507
diff changeset
246 {
8f9090b137f1 Optimization in C-STORE SCP by avoiding an unnecessary DICOM parsing
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4507
diff changeset
247 const DicomValue* value = header.TestAndGetValue(DICOM_TAG_TRANSFER_SYNTAX_UID);
8f9090b137f1 Optimization in C-STORE SCP by avoiding an unnecessary DICOM parsing
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4507
diff changeset
248 if (value != NULL &&
8f9090b137f1 Optimization in C-STORE SCP by avoiding an unnecessary DICOM parsing
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4507
diff changeset
249 !value->IsBinary() &&
8f9090b137f1 Optimization in C-STORE SCP by avoiding an unnecessary DICOM parsing
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4507
diff changeset
250 !value->IsNull())
8f9090b137f1 Optimization in C-STORE SCP by avoiding an unnecessary DICOM parsing
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4507
diff changeset
251 {
8f9090b137f1 Optimization in C-STORE SCP by avoiding an unnecessary DICOM parsing
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4507
diff changeset
252 return ::Orthanc::LookupTransferSyntax(result, Toolbox::StripSpaces(value->GetContent()));
8f9090b137f1 Optimization in C-STORE SCP by avoiding an unnecessary DICOM parsing
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4507
diff changeset
253 }
8f9090b137f1 Optimization in C-STORE SCP by avoiding an unnecessary DICOM parsing
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4507
diff changeset
254 }
8f9090b137f1 Optimization in C-STORE SCP by avoiding an unnecessary DICOM parsing
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4507
diff changeset
255 else
8f9090b137f1 Optimization in C-STORE SCP by avoiding an unnecessary DICOM parsing
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4507
diff changeset
256 {
8f9090b137f1 Optimization in C-STORE SCP by avoiding an unnecessary DICOM parsing
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4507
diff changeset
257 // This is a DICOM file without a proper meta-header. Fallback
8f9090b137f1 Optimization in C-STORE SCP by avoiding an unnecessary DICOM parsing
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4507
diff changeset
258 // to DCMTK, which will fully parse the dataset to retrieve
8f9090b137f1 Optimization in C-STORE SCP by avoiding an unnecessary DICOM parsing
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4507
diff changeset
259 // the transfer syntax. Added in Orthanc 1.8.2.
8f9090b137f1 Optimization in C-STORE SCP by avoiding an unnecessary DICOM parsing
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4507
diff changeset
260 return GetParsedDicomFile().LookupTransferSyntax(result);
8f9090b137f1 Optimization in C-STORE SCP by avoiding an unnecessary DICOM parsing
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4507
diff changeset
261 }
8f9090b137f1 Optimization in C-STORE SCP by avoiding an unnecessary DICOM parsing
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4507
diff changeset
262
8f9090b137f1 Optimization in C-STORE SCP by avoiding an unnecessary DICOM parsing
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4507
diff changeset
263 return false;
2189
c4b3259c8bce New metadata automatically computed at the instance level: "TransferSyntax"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2131
diff changeset
264 }
2898
e5e3253a1164 DicomInstanceToStore::GetHasher()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2894
diff changeset
265
e5e3253a1164 DicomInstanceToStore::GetHasher()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2894
diff changeset
266
3845
281045a1e6db new "info" field in "ReceivedInstanceFilter()" callback
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3841
diff changeset
267 bool DicomInstanceToStore::HasPixelData() const
281045a1e6db new "info" field in "ReceivedInstanceFilter()" callback
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3841
diff changeset
268 {
4508
8f9090b137f1 Optimization in C-STORE SCP by avoiding an unnecessary DICOM parsing
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4507
diff changeset
269 return GetParsedDicomFile().HasTag(DICOM_TAG_PIXEL_DATA);
3912
7610af1532c3 prototyping automated transcoding of incoming DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3847
diff changeset
270 }
7610af1532c3 prototyping automated transcoding of incoming DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3847
diff changeset
271
4508
8f9090b137f1 Optimization in C-STORE SCP by avoiding an unnecessary DICOM parsing
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4507
diff changeset
272
4507
b4c58795f3a8 widening the use of DicomTransferSyntax enum
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4506
diff changeset
273 void DicomInstanceToStore::GetSummary(DicomMap& summary) const
b4c58795f3a8 widening the use of DicomTransferSyntax enum
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4506
diff changeset
274 {
b4c58795f3a8 widening the use of DicomTransferSyntax enum
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4506
diff changeset
275 OrthancConfiguration::DefaultExtractDicomSummary(summary, GetParsedDicomFile());
b4c58795f3a8 widening the use of DicomTransferSyntax enum
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4506
diff changeset
276 }
b4c58795f3a8 widening the use of DicomTransferSyntax enum
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4506
diff changeset
277
4508
8f9090b137f1 Optimization in C-STORE SCP by avoiding an unnecessary DICOM parsing
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4507
diff changeset
278
5036
877bc3b96476 Handle Dicom sequences in ExtraMainDicomTags and save them in the 'MainDicomSequences' metadata
Alain Mazy <am@osimis.io>
parents: 4988
diff changeset
279 void DicomInstanceToStore::GetDicomAsJson(Json::Value& dicomAsJson, const std::set<DicomTag>& ignoreTagLength) const
4507
b4c58795f3a8 widening the use of DicomTransferSyntax enum
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4506
diff changeset
280 {
5036
877bc3b96476 Handle Dicom sequences in ExtraMainDicomTags and save them in the 'MainDicomSequences' metadata
Alain Mazy <am@osimis.io>
parents: 4988
diff changeset
281 OrthancConfiguration::DefaultDicomDatasetToJson(dicomAsJson, GetParsedDicomFile(), ignoreTagLength);
4507
b4c58795f3a8 widening the use of DicomTransferSyntax enum
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4506
diff changeset
282 }
b4c58795f3a8 widening the use of DicomTransferSyntax enum
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4506
diff changeset
283
4508
8f9090b137f1 Optimization in C-STORE SCP by avoiding an unnecessary DICOM parsing
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4507
diff changeset
284
4507
b4c58795f3a8 widening the use of DicomTransferSyntax enum
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4506
diff changeset
285 void DicomInstanceToStore::DatasetToJson(Json::Value& target,
b4c58795f3a8 widening the use of DicomTransferSyntax enum
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4506
diff changeset
286 DicomToJsonFormat format,
b4c58795f3a8 widening the use of DicomTransferSyntax enum
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4506
diff changeset
287 DicomToJsonFlags flags,
b4c58795f3a8 widening the use of DicomTransferSyntax enum
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4506
diff changeset
288 unsigned int maxStringLength) const
b4c58795f3a8 widening the use of DicomTransferSyntax enum
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4506
diff changeset
289 {
b4c58795f3a8 widening the use of DicomTransferSyntax enum
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4506
diff changeset
290 return GetParsedDicomFile().DatasetToJson(target, format, flags, maxStringLength);
b4c58795f3a8 widening the use of DicomTransferSyntax enum
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4506
diff changeset
291 }
b4c58795f3a8 widening the use of DicomTransferSyntax enum
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4506
diff changeset
292
4508
8f9090b137f1 Optimization in C-STORE SCP by avoiding an unnecessary DICOM parsing
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4507
diff changeset
293
4507
b4c58795f3a8 widening the use of DicomTransferSyntax enum
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4506
diff changeset
294 unsigned int DicomInstanceToStore::GetFramesCount() const
b4c58795f3a8 widening the use of DicomTransferSyntax enum
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4506
diff changeset
295 {
b4c58795f3a8 widening the use of DicomTransferSyntax enum
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4506
diff changeset
296 return GetParsedDicomFile().GetFramesCount();
b4c58795f3a8 widening the use of DicomTransferSyntax enum
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4506
diff changeset
297 }
4508
8f9090b137f1 Optimization in C-STORE SCP by avoiding an unnecessary DICOM parsing
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4507
diff changeset
298
8f9090b137f1 Optimization in C-STORE SCP by avoiding an unnecessary DICOM parsing
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4507
diff changeset
299
4507
b4c58795f3a8 widening the use of DicomTransferSyntax enum
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4506
diff changeset
300 ImageAccessor* DicomInstanceToStore::DecodeFrame(unsigned int frame) const
b4c58795f3a8 widening the use of DicomTransferSyntax enum
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4506
diff changeset
301 {
b4c58795f3a8 widening the use of DicomTransferSyntax enum
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4506
diff changeset
302 return GetParsedDicomFile().DecodeFrame(frame);
b4c58795f3a8 widening the use of DicomTransferSyntax enum
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4506
diff changeset
303 }
4988
8fba26292a9f Housekeeper plugin: finalizing + integration tests ok
Alain Mazy <am@osimis.io>
parents: 4892
diff changeset
304
8fba26292a9f Housekeeper plugin: finalizing + integration tests ok
Alain Mazy <am@osimis.io>
parents: 4892
diff changeset
305 void DicomInstanceToStore::CopyMetadata(const DicomInstanceToStore::MetadataMap& metadata)
8fba26292a9f Housekeeper plugin: finalizing + integration tests ok
Alain Mazy <am@osimis.io>
parents: 4892
diff changeset
306 {
8fba26292a9f Housekeeper plugin: finalizing + integration tests ok
Alain Mazy <am@osimis.io>
parents: 4892
diff changeset
307 for (MetadataMap::const_iterator it = metadata.begin();
8fba26292a9f Housekeeper plugin: finalizing + integration tests ok
Alain Mazy <am@osimis.io>
parents: 4892
diff changeset
308 it != metadata.end(); ++it)
8fba26292a9f Housekeeper plugin: finalizing + integration tests ok
Alain Mazy <am@osimis.io>
parents: 4892
diff changeset
309 {
8fba26292a9f Housekeeper plugin: finalizing + integration tests ok
Alain Mazy <am@osimis.io>
parents: 4892
diff changeset
310 AddMetadata(it->first.first, it->first.second, it->second);
8fba26292a9f Housekeeper plugin: finalizing + integration tests ok
Alain Mazy <am@osimis.io>
parents: 4892
diff changeset
311 }
8fba26292a9f Housekeeper plugin: finalizing + integration tests ok
Alain Mazy <am@osimis.io>
parents: 4892
diff changeset
312 }
8fba26292a9f Housekeeper plugin: finalizing + integration tests ok
Alain Mazy <am@osimis.io>
parents: 4892
diff changeset
313
1003
1d35281d967c DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
314 }