annotate OrthancServer/ParsedDicomFile.cpp @ 2237:403d92d8df83

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author Sebastien Jodogne <s.jodogne@gmail.com>
date Fri, 16 Dec 2016 14:45:40 +0100
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1 /**
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2 * Orthanc - A Lightweight, RESTful DICOM Store
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3 * Copyright (C) 2012-2016 Sebastien Jodogne, Medical Physics
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4 * Department, University Hospital of Liege, Belgium
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5 *
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6 * This program is free software: you can redistribute it and/or
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7 * modify it under the terms of the GNU General Public License as
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8 * published by the Free Software Foundation, either version 3 of the
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9 * License, or (at your option) any later version.
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10 *
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11 * In addition, as a special exception, the copyright holders of this
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12 * program give permission to link the code of its release with the
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13 * OpenSSL project's "OpenSSL" library (or with modified versions of it
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14 * that use the same license as the "OpenSSL" library), and distribute
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15 * the linked executables. You must obey the GNU General Public License
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16 * in all respects for all of the code used other than "OpenSSL". If you
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17 * modify file(s) with this exception, you may extend this exception to
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18 * your version of the file(s), but you are not obligated to do so. If
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19 * you do not wish to do so, delete this exception statement from your
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20 * version. If you delete this exception statement from all source files
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21 * in the program, then also delete it here.
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22 *
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23 * This program is distributed in the hope that it will be useful, but
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24 * WITHOUT ANY WARRANTY; without even the implied warranty of
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25 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
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26 * General Public License for more details.
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27 *
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28 * You should have received a copy of the GNU General Public License
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29 * along with this program. If not, see <http://www.gnu.org/licenses/>.
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30 **/
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31
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32
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33
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34 /*=========================================================================
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35
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36 This file is based on portions of the following project:
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37
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38 Program: GDCM (Grassroots DICOM). A DICOM library
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39 Module: http://gdcm.sourceforge.net/Copyright.html
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40
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41 Copyright (c) 2006-2011 Mathieu Malaterre
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42 Copyright (c) 1993-2005 CREATIS
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43 (CREATIS = Centre de Recherche et d'Applications en Traitement de l'Image)
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44 All rights reserved.
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45
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46 Redistribution and use in source and binary forms, with or without
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47 modification, are permitted provided that the following conditions are met:
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48
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49 * Redistributions of source code must retain the above copyright notice,
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50 this list of conditions and the following disclaimer.
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51
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52 * Redistributions in binary form must reproduce the above copyright notice,
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53 this list of conditions and the following disclaimer in the documentation
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54 and/or other materials provided with the distribution.
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55
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56 * Neither name of Mathieu Malaterre, or CREATIS, nor the names of any
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57 contributors (CNRS, INSERM, UCB, Universite Lyon I), may be used to
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58 endorse or promote products derived from this software without specific
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59 prior written permission.
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60
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61 THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS ``AS IS''
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62 AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
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63 IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE
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64 ARE DISCLAIMED. IN NO EVENT SHALL THE AUTHORS OR CONTRIBUTORS BE LIABLE FOR
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65 ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL
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66 DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR
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67 SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER
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68 CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY,
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69 OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE
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70 OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
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71
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72 =========================================================================*/
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73
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74
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75 #include "PrecompiledHeadersServer.h"
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76
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77 #ifndef NOMINMAX
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78 #define NOMINMAX
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79 #endif
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80
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81 #include "ParsedDicomFile.h"
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82
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83 #include "OrthancInitialization.h"
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84 #include "ServerToolbox.h"
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85 #include "FromDcmtkBridge.h"
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86 #include "ToDcmtkBridge.h"
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87 #include "Internals/DicomFrameIndex.h"
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88 #include "../Core/Images/JpegReader.h"
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89 #include "../Core/Images/PngReader.h"
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90 #include "../Core/Logging.h"
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91 #include "../Core/OrthancException.h"
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92 #include "../Core/Toolbox.h"
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93
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94 #include <list>
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95 #include <limits>
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96
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97 #include <boost/lexical_cast.hpp>
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98
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99 #include <dcmtk/dcmdata/dcchrstr.h>
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100 #include <dcmtk/dcmdata/dcdicent.h>
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101 #include <dcmtk/dcmdata/dcdict.h>
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102 #include <dcmtk/dcmdata/dcfilefo.h>
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103 #include <dcmtk/dcmdata/dcuid.h>
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104 #include <dcmtk/dcmdata/dcmetinf.h>
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105 #include <dcmtk/dcmdata/dcdeftag.h>
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106
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107 #include <dcmtk/dcmdata/dcvrae.h>
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108 #include <dcmtk/dcmdata/dcvras.h>
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109 #include <dcmtk/dcmdata/dcvrcs.h>
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110 #include <dcmtk/dcmdata/dcvrda.h>
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111 #include <dcmtk/dcmdata/dcvrds.h>
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112 #include <dcmtk/dcmdata/dcvrdt.h>
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113 #include <dcmtk/dcmdata/dcvrfd.h>
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114 #include <dcmtk/dcmdata/dcvrfl.h>
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115 #include <dcmtk/dcmdata/dcvris.h>
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116 #include <dcmtk/dcmdata/dcvrlo.h>
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117 #include <dcmtk/dcmdata/dcvrlt.h>
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118 #include <dcmtk/dcmdata/dcvrpn.h>
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119 #include <dcmtk/dcmdata/dcvrsh.h>
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120 #include <dcmtk/dcmdata/dcvrsl.h>
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121 #include <dcmtk/dcmdata/dcvrss.h>
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122 #include <dcmtk/dcmdata/dcvrst.h>
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123 #include <dcmtk/dcmdata/dcvrtm.h>
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124 #include <dcmtk/dcmdata/dcvrui.h>
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125 #include <dcmtk/dcmdata/dcvrul.h>
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126 #include <dcmtk/dcmdata/dcvrus.h>
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127 #include <dcmtk/dcmdata/dcvrut.h>
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128 #include <dcmtk/dcmdata/dcpixel.h>
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129 #include <dcmtk/dcmdata/dcpixseq.h>
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130 #include <dcmtk/dcmdata/dcpxitem.h>
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131
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132
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133 #include <boost/math/special_functions/round.hpp>
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134 #include <dcmtk/dcmdata/dcostrmb.h>
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135 #include <boost/algorithm/string/predicate.hpp>
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136
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137
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138 #if DCMTK_VERSION_NUMBER <= 360
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139 # define EXS_JPEGProcess1 EXS_JPEGProcess1TransferSyntax
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140 #endif
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141
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142
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143 static const char* CONTENT_TYPE_OCTET_STREAM = "application/octet-stream";
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144
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145
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146
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147 namespace Orthanc
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148 {
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149 struct ParsedDicomFile::PImpl
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150 {
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151 std::auto_ptr<DcmFileFormat> file_;
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152 std::auto_ptr<DicomFrameIndex> frameIndex_;
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153 };
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154
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155
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156 static void SendPathValueForDictionary(RestApiOutput& output,
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157 DcmItem& dicom)
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158 {
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159 Json::Value v = Json::arrayValue;
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160
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161 for (unsigned long i = 0; i < dicom.card(); i++)
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162 {
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163 DcmElement* element = dicom.getElement(i);
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164 if (element)
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165 {
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166 char buf[16];
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167 sprintf(buf, "%04x-%04x", element->getTag().getGTag(), element->getTag().getETag());
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168 v.append(buf);
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169 }
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170 }
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171
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172 output.AnswerJson(v);
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173 }
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174
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175 static inline uint16_t GetCharValue(char c)
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176 {
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177 if (c >= '0' && c <= '9')
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178 return c - '0';
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179 else if (c >= 'a' && c <= 'f')
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180 return c - 'a' + 10;
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181 else if (c >= 'A' && c <= 'F')
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182 return c - 'A' + 10;
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183 else
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184 return 0;
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185 }
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186
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187 static inline uint16_t GetTagValue(const char* c)
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188 {
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189 return ((GetCharValue(c[0]) << 12) +
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190 (GetCharValue(c[1]) << 8) +
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191 (GetCharValue(c[2]) << 4) +
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192 GetCharValue(c[3]));
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193 }
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194
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195 static void ParseTagAndGroup(DcmTagKey& key,
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196 const std::string& tag)
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197 {
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198 DicomTag t = FromDcmtkBridge::ParseTag(tag);
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199 key = DcmTagKey(t.GetGroup(), t.GetElement());
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200 }
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201
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202
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203 static void SendSequence(RestApiOutput& output,
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204 DcmSequenceOfItems& sequence)
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205 {
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206 // This element is a sequence
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207 Json::Value v = Json::arrayValue;
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208
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209 for (unsigned long i = 0; i < sequence.card(); i++)
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210 {
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211 v.append(boost::lexical_cast<std::string>(i));
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212 }
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213
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214 output.AnswerJson(v);
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215 }
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216
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217
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218 static unsigned int GetPixelDataBlockCount(DcmPixelData& pixelData,
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219 E_TransferSyntax transferSyntax)
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220 {
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221 DcmPixelSequence* pixelSequence = NULL;
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222 if (pixelData.getEncapsulatedRepresentation
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223 (transferSyntax, NULL, pixelSequence).good() && pixelSequence)
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224 {
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225 return pixelSequence->card();
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226 }
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227 else
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228 {
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229 return 1;
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230 }
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231 }
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232
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233
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diff changeset
234 namespace
790
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235 {
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236 class DicomFieldStream : public IHttpStreamAnswer
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237 {
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238 private:
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239 DcmElement& element_;
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240 uint32_t length_;
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241 uint32_t offset_;
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242 std::string chunk_;
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243 size_t chunkSize_;
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244
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245 public:
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246 DicomFieldStream(DcmElement& element,
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247 E_TransferSyntax transferSyntax) :
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248 element_(element),
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249 length_(element.getLength(transferSyntax)),
1616
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250 offset_(0),
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diff changeset
251 chunkSize_(0)
1519
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252 {
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253 static const size_t CHUNK_SIZE = 64 * 1024; // Use chunks of max 64KB
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254 chunk_.resize(CHUNK_SIZE);
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255 }
790
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256
1523
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diff changeset
257 virtual HttpCompression SetupHttpCompression(bool /*gzipAllowed*/,
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diff changeset
258 bool /*deflateAllowed*/)
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259 {
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260 // No support for compression
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261 return HttpCompression_None;
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262 }
790
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263
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264 virtual bool HasContentFilename(std::string& filename)
790
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265 {
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266 return false;
790
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267 }
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diff changeset
268
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diff changeset
269 virtual std::string GetContentType()
790
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diff changeset
270 {
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diff changeset
271 return "";
790
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272 }
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273
1519
8bd0d897763f refactoring: IHttpStreamAnswer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
274 virtual uint64_t GetContentLength()
790
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
275 {
1519
8bd0d897763f refactoring: IHttpStreamAnswer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
276 return length_;
790
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
277 }
1519
8bd0d897763f refactoring: IHttpStreamAnswer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
278
8bd0d897763f refactoring: IHttpStreamAnswer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
279 virtual bool ReadNextChunk()
790
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
280 {
1520
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1519
diff changeset
281 assert(offset_ <= length_);
1519
8bd0d897763f refactoring: IHttpStreamAnswer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
282
8bd0d897763f refactoring: IHttpStreamAnswer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
283 if (offset_ == length_)
8bd0d897763f refactoring: IHttpStreamAnswer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
284 {
8bd0d897763f refactoring: IHttpStreamAnswer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
285 return false;
8bd0d897763f refactoring: IHttpStreamAnswer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
286 }
8bd0d897763f refactoring: IHttpStreamAnswer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
287 else
8bd0d897763f refactoring: IHttpStreamAnswer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
288 {
8bd0d897763f refactoring: IHttpStreamAnswer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
289 if (length_ - offset_ < chunk_.size())
8bd0d897763f refactoring: IHttpStreamAnswer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
290 {
8bd0d897763f refactoring: IHttpStreamAnswer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
291 chunkSize_ = length_ - offset_;
8bd0d897763f refactoring: IHttpStreamAnswer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
292 }
8bd0d897763f refactoring: IHttpStreamAnswer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
293 else
8bd0d897763f refactoring: IHttpStreamAnswer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
294 {
8bd0d897763f refactoring: IHttpStreamAnswer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
295 chunkSize_ = chunk_.size();
8bd0d897763f refactoring: IHttpStreamAnswer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
296 }
8bd0d897763f refactoring: IHttpStreamAnswer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
297
8bd0d897763f refactoring: IHttpStreamAnswer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
298 OFCondition cond = element_.getPartialValue(&chunk_[0], offset_, chunkSize_);
8bd0d897763f refactoring: IHttpStreamAnswer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
299
8bd0d897763f refactoring: IHttpStreamAnswer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
300 offset_ += chunkSize_;
8bd0d897763f refactoring: IHttpStreamAnswer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
301
8bd0d897763f refactoring: IHttpStreamAnswer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
302 if (!cond.good())
8bd0d897763f refactoring: IHttpStreamAnswer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
303 {
8bd0d897763f refactoring: IHttpStreamAnswer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
304 LOG(ERROR) << "Error while sending a DICOM field: " << cond.text();
8bd0d897763f refactoring: IHttpStreamAnswer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
305 throw OrthancException(ErrorCode_InternalError);
8bd0d897763f refactoring: IHttpStreamAnswer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
306 }
8bd0d897763f refactoring: IHttpStreamAnswer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
307
8bd0d897763f refactoring: IHttpStreamAnswer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
308 return true;
8bd0d897763f refactoring: IHttpStreamAnswer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
309 }
790
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
310 }
1519
8bd0d897763f refactoring: IHttpStreamAnswer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
311
8bd0d897763f refactoring: IHttpStreamAnswer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
312 virtual const char *GetChunkContent()
8bd0d897763f refactoring: IHttpStreamAnswer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
313 {
8bd0d897763f refactoring: IHttpStreamAnswer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
314 return chunk_.c_str();
8bd0d897763f refactoring: IHttpStreamAnswer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
315 }
8bd0d897763f refactoring: IHttpStreamAnswer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
316
8bd0d897763f refactoring: IHttpStreamAnswer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
317 virtual size_t GetChunkSize()
8bd0d897763f refactoring: IHttpStreamAnswer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
318 {
8bd0d897763f refactoring: IHttpStreamAnswer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
319 return chunkSize_;
8bd0d897763f refactoring: IHttpStreamAnswer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
320 }
8bd0d897763f refactoring: IHttpStreamAnswer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
321 };
790
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
322 }
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
323
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
324
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
325 static bool AnswerPixelData(RestApiOutput& output,
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
326 DcmItem& dicom,
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
327 E_TransferSyntax transferSyntax,
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
328 const std::string* blockUri)
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
329 {
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
330 DcmTag k(DICOM_TAG_PIXEL_DATA.GetGroup(),
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
331 DICOM_TAG_PIXEL_DATA.GetElement());
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
332
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
333 DcmElement *element = NULL;
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
334 if (!dicom.findAndGetElement(k, element).good() ||
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
335 element == NULL)
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
336 {
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
337 return false;
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
338 }
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
339
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
340 try
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
341 {
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
342 DcmPixelData& pixelData = dynamic_cast<DcmPixelData&>(*element);
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
343 if (blockUri == NULL)
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
344 {
1913
41e402cd7b3a do not generate RC files for non-Windows builds
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1902
diff changeset
345 // The user asks how many blocks are present in this pixel data
790
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
346 unsigned int blocks = GetPixelDataBlockCount(pixelData, transferSyntax);
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
347
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
348 Json::Value result(Json::arrayValue);
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
349 for (unsigned int i = 0; i < blocks; i++)
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
350 {
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
351 result.append(boost::lexical_cast<std::string>(i));
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
352 }
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
353
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
354 output.AnswerJson(result);
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
355 return true;
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
356 }
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
357
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
358
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
359 unsigned int block = boost::lexical_cast<unsigned int>(*blockUri);
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
360
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
361 if (block < GetPixelDataBlockCount(pixelData, transferSyntax))
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
362 {
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
363 DcmPixelSequence* pixelSequence = NULL;
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
364 if (pixelData.getEncapsulatedRepresentation
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
365 (transferSyntax, NULL, pixelSequence).good() && pixelSequence)
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
366 {
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
367 // This is the case for JPEG transfer syntaxes
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
368 if (block < pixelSequence->card())
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
369 {
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
370 DcmPixelItem* pixelItem = NULL;
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
371 if (pixelSequence->getItem(pixelItem, block).good() && pixelItem)
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
372 {
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
373 if (pixelItem->getLength() == 0)
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
374 {
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
375 output.AnswerBuffer(NULL, 0, CONTENT_TYPE_OCTET_STREAM);
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
376 return true;
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
377 }
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
378
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
379 Uint8* buffer = NULL;
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
380 if (pixelItem->getUint8Array(buffer).good() && buffer)
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
381 {
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
382 output.AnswerBuffer(buffer, pixelItem->getLength(), CONTENT_TYPE_OCTET_STREAM);
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
383 return true;
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
384 }
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
385 }
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
386 }
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
387 }
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
388 else
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
389 {
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
390 // This is the case for raw, uncompressed image buffers
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
391 assert(*blockUri == "0");
1519
8bd0d897763f refactoring: IHttpStreamAnswer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
392 DicomFieldStream stream(*element, transferSyntax);
8bd0d897763f refactoring: IHttpStreamAnswer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
393 output.AnswerStream(stream);
790
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
394 }
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
395 }
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
396 }
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
397 catch (boost::bad_lexical_cast&)
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
398 {
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
399 // The URI entered by the user is not a number
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
400 }
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
401 catch (std::bad_cast&)
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
402 {
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
403 // This should never happen
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
404 }
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
405
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
406 return false;
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
407 }
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
408
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
409
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
410
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
411 static void SendPathValueForLeaf(RestApiOutput& output,
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
412 const std::string& tag,
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
413 DcmItem& dicom,
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
414 E_TransferSyntax transferSyntax)
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
415 {
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
416 DcmTagKey k;
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
417 ParseTagAndGroup(k, tag);
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
418
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
419 DcmSequenceOfItems* sequence = NULL;
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
420 if (dicom.findAndGetSequence(k, sequence).good() &&
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
421 sequence != NULL &&
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
422 sequence->getVR() == EVR_SQ)
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
423 {
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
424 SendSequence(output, *sequence);
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
425 return;
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
426 }
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
427
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
428 DcmElement* element = NULL;
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
429 if (dicom.findAndGetElement(k, element).good() &&
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
430 element != NULL &&
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
431 //element->getVR() != EVR_UNKNOWN && // This would forbid private tags
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
432 element->getVR() != EVR_SQ)
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
433 {
1519
8bd0d897763f refactoring: IHttpStreamAnswer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
434 DicomFieldStream stream(*element, transferSyntax);
8bd0d897763f refactoring: IHttpStreamAnswer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
435 output.AnswerStream(stream);
790
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
436 }
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
437 }
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
438
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
439 void ParsedDicomFile::SendPathValue(RestApiOutput& output,
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
440 const UriComponents& uri)
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
441 {
794
437c4a83d2cc refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 793
diff changeset
442 DcmItem* dicom = pimpl_->file_->getDataset();
437c4a83d2cc refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 793
diff changeset
443 E_TransferSyntax transferSyntax = pimpl_->file_->getDataset()->getOriginalXfer();
790
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
444
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
445 // Special case: Accessing the pixel data
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
446 if (uri.size() == 1 ||
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
447 uri.size() == 2)
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
448 {
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
449 DcmTagKey tag;
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
450 ParseTagAndGroup(tag, uri[0]);
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
451
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
452 if (tag.getGroup() == DICOM_TAG_PIXEL_DATA.GetGroup() &&
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
453 tag.getElement() == DICOM_TAG_PIXEL_DATA.GetElement())
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
454 {
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
455 AnswerPixelData(output, *dicom, transferSyntax, uri.size() == 1 ? NULL : &uri[1]);
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
456 return;
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
457 }
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
458 }
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
459
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
460 // Go down in the tag hierarchy according to the URI
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
461 for (size_t pos = 0; pos < uri.size() / 2; pos++)
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
462 {
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
463 size_t index;
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
464 try
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
465 {
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
466 index = boost::lexical_cast<size_t>(uri[2 * pos + 1]);
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
467 }
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
468 catch (boost::bad_lexical_cast&)
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
469 {
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
470 return;
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
471 }
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
472
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
473 DcmTagKey k;
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
474 DcmItem *child = NULL;
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
475 ParseTagAndGroup(k, uri[2 * pos]);
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
476 if (!dicom->findAndGetSequenceItem(k, child, index).good() ||
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
477 child == NULL)
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
478 {
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
479 return;
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
480 }
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
481
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
482 dicom = child;
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
483 }
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
484
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
485 // We have reached the end of the URI
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
486 if (uri.size() % 2 == 0)
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
487 {
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
488 SendPathValueForDictionary(output, *dicom);
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
489 }
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
490 else
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
491 {
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
492 SendPathValueForLeaf(output, uri.back(), *dicom, transferSyntax);
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
493 }
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
494 }
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
495
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
496
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
497 void ParsedDicomFile::Remove(const DicomTag& tag)
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
498 {
1924
6c73df12ca51 New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1913
diff changeset
499 InvalidateCache();
6c73df12ca51 New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1913
diff changeset
500
790
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
501 DcmTagKey key(tag.GetGroup(), tag.GetElement());
794
437c4a83d2cc refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 793
diff changeset
502 DcmElement* element = pimpl_->file_->getDataset()->remove(key);
790
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
503 if (element != NULL)
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
504 {
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
505 delete element;
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
506 }
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
507 }
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
508
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
509
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
510
991
2f76b92addd4 keep private tags during anonymization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 956
diff changeset
511 void ParsedDicomFile::RemovePrivateTagsInternal(const std::set<DicomTag>* toKeep)
790
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
512 {
1924
6c73df12ca51 New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1913
diff changeset
513 InvalidateCache();
6c73df12ca51 New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1913
diff changeset
514
991
2f76b92addd4 keep private tags during anonymization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 956
diff changeset
515 DcmDataset& dataset = *pimpl_->file_->getDataset();
2f76b92addd4 keep private tags during anonymization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 956
diff changeset
516
2f76b92addd4 keep private tags during anonymization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 956
diff changeset
517 // Loop over the dataset to detect its private tags
790
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
518 typedef std::list<DcmElement*> Tags;
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
519 Tags privateTags;
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
520
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
521 for (unsigned long i = 0; i < dataset.card(); i++)
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
522 {
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
523 DcmElement* element = dataset.getElement(i);
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
524 DcmTag tag(element->getTag());
991
2f76b92addd4 keep private tags during anonymization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 956
diff changeset
525
2f76b92addd4 keep private tags during anonymization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 956
diff changeset
526 // Is this a private tag?
1694
06d579e82bb8 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1693
diff changeset
527 if (tag.isPrivate())
790
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
528 {
991
2f76b92addd4 keep private tags during anonymization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 956
diff changeset
529 bool remove = true;
2f76b92addd4 keep private tags during anonymization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 956
diff changeset
530
2f76b92addd4 keep private tags during anonymization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 956
diff changeset
531 // Check whether this private tag is to be kept
2f76b92addd4 keep private tags during anonymization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 956
diff changeset
532 if (toKeep != NULL)
2f76b92addd4 keep private tags during anonymization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 956
diff changeset
533 {
2f76b92addd4 keep private tags during anonymization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 956
diff changeset
534 DicomTag tmp = FromDcmtkBridge::Convert(tag);
2f76b92addd4 keep private tags during anonymization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 956
diff changeset
535 if (toKeep->find(tmp) != toKeep->end())
2f76b92addd4 keep private tags during anonymization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 956
diff changeset
536 {
2f76b92addd4 keep private tags during anonymization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 956
diff changeset
537 remove = false; // Keep it
2f76b92addd4 keep private tags during anonymization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 956
diff changeset
538 }
2f76b92addd4 keep private tags during anonymization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 956
diff changeset
539 }
2f76b92addd4 keep private tags during anonymization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 956
diff changeset
540
2f76b92addd4 keep private tags during anonymization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 956
diff changeset
541 if (remove)
2f76b92addd4 keep private tags during anonymization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 956
diff changeset
542 {
2f76b92addd4 keep private tags during anonymization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 956
diff changeset
543 privateTags.push_back(element);
2f76b92addd4 keep private tags during anonymization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 956
diff changeset
544 }
790
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
545 }
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
546 }
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
547
991
2f76b92addd4 keep private tags during anonymization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 956
diff changeset
548 // Loop over the detected private tags to remove them
790
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
549 for (Tags::iterator it = privateTags.begin();
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
550 it != privateTags.end(); ++it)
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
551 {
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
552 DcmElement* tmp = dataset.remove(*it);
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
553 if (tmp != NULL)
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
554 {
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
555 delete tmp;
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
556 }
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
557 }
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
558 }
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
559
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
560
1693
558b25228a23 creation of tag hierarchy from json
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1689
diff changeset
561 static void InsertInternal(DcmDataset& dicom,
558b25228a23 creation of tag hierarchy from json
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1689
diff changeset
562 DcmElement* element)
790
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
563 {
1693
558b25228a23 creation of tag hierarchy from json
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1689
diff changeset
564 OFCondition cond = dicom.insert(element, false, false);
1307
f796207e3df1 Fix replacement and insertion of private DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1288
diff changeset
565 if (!cond.good())
790
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
566 {
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
567 // This field already exists
1693
558b25228a23 creation of tag hierarchy from json
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1689
diff changeset
568 delete element;
790
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
569 throw OrthancException(ErrorCode_InternalError);
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
570 }
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
571 }
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
572
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
573
1693
558b25228a23 creation of tag hierarchy from json
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1689
diff changeset
574 void ParsedDicomFile::Insert(const DicomTag& tag,
558b25228a23 creation of tag hierarchy from json
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1689
diff changeset
575 const Json::Value& value,
1818
1065401501fb ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1805
diff changeset
576 bool decodeDataUriScheme)
790
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
577 {
1980
ebce5f456b8e new error code: ErrorCode_AlreadyExistingTag
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1979
diff changeset
578 if (pimpl_->file_->getDataset()->tagExists(ToDcmtkBridge::Convert(tag)))
ebce5f456b8e new error code: ErrorCode_AlreadyExistingTag
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1979
diff changeset
579 {
ebce5f456b8e new error code: ErrorCode_AlreadyExistingTag
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1979
diff changeset
580 throw OrthancException(ErrorCode_AlreadyExistingTag);
ebce5f456b8e new error code: ErrorCode_AlreadyExistingTag
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1979
diff changeset
581 }
ebce5f456b8e new error code: ErrorCode_AlreadyExistingTag
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1979
diff changeset
582
1982
b5d4f9c156ad Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1981
diff changeset
583 if (decodeDataUriScheme &&
b5d4f9c156ad Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1981
diff changeset
584 value.type() == Json::stringValue &&
b5d4f9c156ad Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1981
diff changeset
585 (tag == DICOM_TAG_ENCAPSULATED_DOCUMENT ||
b5d4f9c156ad Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1981
diff changeset
586 tag == DICOM_TAG_PIXEL_DATA))
b5d4f9c156ad Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1981
diff changeset
587 {
b5d4f9c156ad Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1981
diff changeset
588 if (EmbedContentInternal(value.asString()))
b5d4f9c156ad Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1981
diff changeset
589 {
b5d4f9c156ad Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1981
diff changeset
590 return;
b5d4f9c156ad Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1981
diff changeset
591 }
b5d4f9c156ad Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1981
diff changeset
592 }
b5d4f9c156ad Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1981
diff changeset
593
1924
6c73df12ca51 New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1913
diff changeset
594 InvalidateCache();
1818
1065401501fb ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1805
diff changeset
595 std::auto_ptr<DcmElement> element(FromDcmtkBridge::FromJson(tag, value, decodeDataUriScheme, GetEncoding()));
1693
558b25228a23 creation of tag hierarchy from json
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1689
diff changeset
596 InsertInternal(*pimpl_->file_->getDataset(), element.release());
558b25228a23 creation of tag hierarchy from json
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1689
diff changeset
597 }
558b25228a23 creation of tag hierarchy from json
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1689
diff changeset
598
790
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
599
1982
b5d4f9c156ad Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1981
diff changeset
600 static bool CanReplaceProceed(DcmDataset& dicom,
b5d4f9c156ad Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1981
diff changeset
601 const DcmTagKey& tag,
b5d4f9c156ad Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1981
diff changeset
602 DicomReplaceMode mode)
1693
558b25228a23 creation of tag hierarchy from json
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1689
diff changeset
603 {
1979
9e0f408db796 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1956
diff changeset
604 if (dicom.findAndDeleteElement(tag).good())
790
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
605 {
1979
9e0f408db796 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1956
diff changeset
606 // This tag was existing, it has been deleted
9e0f408db796 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1956
diff changeset
607 return true;
9e0f408db796 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1956
diff changeset
608 }
9e0f408db796 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1956
diff changeset
609 else
9e0f408db796 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1956
diff changeset
610 {
9e0f408db796 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1956
diff changeset
611 // This tag was absent, act wrt. the specified "mode"
790
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
612 switch (mode)
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
613 {
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
614 case DicomReplaceMode_InsertIfAbsent:
1979
9e0f408db796 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1956
diff changeset
615 return true;
790
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
616
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
617 case DicomReplaceMode_ThrowIfAbsent:
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
618 throw OrthancException(ErrorCode_InexistentItem);
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
619
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
620 case DicomReplaceMode_IgnoreIfAbsent:
1979
9e0f408db796 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1956
diff changeset
621 return false;
9e0f408db796 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1956
diff changeset
622
9e0f408db796 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1956
diff changeset
623 default:
9e0f408db796 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1956
diff changeset
624 throw OrthancException(ErrorCode_ParameterOutOfRange);
790
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
625 }
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
626 }
1693
558b25228a23 creation of tag hierarchy from json
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1689
diff changeset
627 }
558b25228a23 creation of tag hierarchy from json
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1689
diff changeset
628
558b25228a23 creation of tag hierarchy from json
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1689
diff changeset
629
558b25228a23 creation of tag hierarchy from json
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1689
diff changeset
630 void ParsedDicomFile::UpdateStorageUid(const DicomTag& tag,
1695
18c02c6987d5 fix for encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1694
diff changeset
631 const std::string& utf8Value,
1818
1065401501fb ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1805
diff changeset
632 bool decodeDataUriScheme)
1693
558b25228a23 creation of tag hierarchy from json
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1689
diff changeset
633 {
558b25228a23 creation of tag hierarchy from json
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1689
diff changeset
634 if (tag != DICOM_TAG_SOP_CLASS_UID &&
558b25228a23 creation of tag hierarchy from json
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1689
diff changeset
635 tag != DICOM_TAG_SOP_INSTANCE_UID)
790
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
636 {
1693
558b25228a23 creation of tag hierarchy from json
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1689
diff changeset
637 return;
790
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
638 }
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
639
1693
558b25228a23 creation of tag hierarchy from json
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1689
diff changeset
640 std::string binary;
1695
18c02c6987d5 fix for encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1694
diff changeset
641 const std::string* decoded = &utf8Value;
1693
558b25228a23 creation of tag hierarchy from json
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1689
diff changeset
642
1818
1065401501fb ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1805
diff changeset
643 if (decodeDataUriScheme &&
1695
18c02c6987d5 fix for encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1694
diff changeset
644 boost::starts_with(utf8Value, "data:application/octet-stream;base64,"))
1693
558b25228a23 creation of tag hierarchy from json
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1689
diff changeset
645 {
558b25228a23 creation of tag hierarchy from json
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1689
diff changeset
646 std::string mime;
1981
4b545a8b1f95 return code in Toolbox::DecodeDataUriScheme
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1980
diff changeset
647 if (!Toolbox::DecodeDataUriScheme(mime, binary, utf8Value))
4b545a8b1f95 return code in Toolbox::DecodeDataUriScheme
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1980
diff changeset
648 {
4b545a8b1f95 return code in Toolbox::DecodeDataUriScheme
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1980
diff changeset
649 throw OrthancException(ErrorCode_BadFileFormat);
4b545a8b1f95 return code in Toolbox::DecodeDataUriScheme
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1980
diff changeset
650 }
4b545a8b1f95 return code in Toolbox::DecodeDataUriScheme
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1980
diff changeset
651
1693
558b25228a23 creation of tag hierarchy from json
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1689
diff changeset
652 decoded = &binary;
558b25228a23 creation of tag hierarchy from json
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1689
diff changeset
653 }
1695
18c02c6987d5 fix for encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1694
diff changeset
654 else
18c02c6987d5 fix for encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1694
diff changeset
655 {
18c02c6987d5 fix for encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1694
diff changeset
656 Encoding encoding = GetEncoding();
18c02c6987d5 fix for encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1694
diff changeset
657 if (GetEncoding() != Encoding_Utf8)
18c02c6987d5 fix for encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1694
diff changeset
658 {
18c02c6987d5 fix for encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1694
diff changeset
659 binary = Toolbox::ConvertFromUtf8(utf8Value, encoding);
18c02c6987d5 fix for encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1694
diff changeset
660 decoded = &binary;
18c02c6987d5 fix for encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1694
diff changeset
661 }
18c02c6987d5 fix for encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1694
diff changeset
662 }
790
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
663
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
664 /**
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
665 * dcmodify will automatically correct 'Media Storage SOP Class
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
666 * UID' and 'Media Storage SOP Instance UID' in the metaheader, if
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
667 * you make changes to the related tags in the dataset ('SOP Class
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
668 * UID' and 'SOP Instance UID') via insert or modify mode
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
669 * options. You can disable this behaviour by using the -nmu
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
670 * option.
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
671 **/
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
672
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
673 if (tag == DICOM_TAG_SOP_CLASS_UID)
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
674 {
1982
b5d4f9c156ad Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1981
diff changeset
675 ReplacePlainString(DICOM_TAG_MEDIA_STORAGE_SOP_CLASS_UID, *decoded);
790
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
676 }
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
677
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
678 if (tag == DICOM_TAG_SOP_INSTANCE_UID)
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
679 {
1982
b5d4f9c156ad Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1981
diff changeset
680 ReplacePlainString(DICOM_TAG_MEDIA_STORAGE_SOP_INSTANCE_UID, *decoded);
1693
558b25228a23 creation of tag hierarchy from json
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1689
diff changeset
681 }
558b25228a23 creation of tag hierarchy from json
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1689
diff changeset
682 }
558b25228a23 creation of tag hierarchy from json
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1689
diff changeset
683
558b25228a23 creation of tag hierarchy from json
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1689
diff changeset
684
558b25228a23 creation of tag hierarchy from json
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1689
diff changeset
685 void ParsedDicomFile::Replace(const DicomTag& tag,
1695
18c02c6987d5 fix for encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1694
diff changeset
686 const std::string& utf8Value,
1982
b5d4f9c156ad Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1981
diff changeset
687 bool decodeDataUriScheme,
1693
558b25228a23 creation of tag hierarchy from json
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1689
diff changeset
688 DicomReplaceMode mode)
558b25228a23 creation of tag hierarchy from json
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1689
diff changeset
689 {
1924
6c73df12ca51 New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1913
diff changeset
690 InvalidateCache();
6c73df12ca51 New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1913
diff changeset
691
1982
b5d4f9c156ad Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1981
diff changeset
692 DcmDataset& dicom = *pimpl_->file_->getDataset();
b5d4f9c156ad Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1981
diff changeset
693 if (CanReplaceProceed(dicom, ToDcmtkBridge::Convert(tag), mode))
b5d4f9c156ad Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1981
diff changeset
694 {
b5d4f9c156ad Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1981
diff changeset
695 // Either the tag was previously existing (and now removed), or
b5d4f9c156ad Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1981
diff changeset
696 // the replace mode was set to "InsertIfAbsent"
1979
9e0f408db796 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1956
diff changeset
697
1982
b5d4f9c156ad Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1981
diff changeset
698 if (decodeDataUriScheme &&
b5d4f9c156ad Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1981
diff changeset
699 (tag == DICOM_TAG_ENCAPSULATED_DOCUMENT ||
b5d4f9c156ad Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1981
diff changeset
700 tag == DICOM_TAG_PIXEL_DATA))
b5d4f9c156ad Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1981
diff changeset
701 {
b5d4f9c156ad Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1981
diff changeset
702 if (EmbedContentInternal(utf8Value))
b5d4f9c156ad Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1981
diff changeset
703 {
b5d4f9c156ad Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1981
diff changeset
704 return;
b5d4f9c156ad Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1981
diff changeset
705 }
b5d4f9c156ad Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1981
diff changeset
706 }
b5d4f9c156ad Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1981
diff changeset
707
b5d4f9c156ad Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1981
diff changeset
708 std::auto_ptr<DcmElement> element(FromDcmtkBridge::CreateElementForTag(tag));
b5d4f9c156ad Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1981
diff changeset
709 FromDcmtkBridge::FillElementWithString(*element, tag, utf8Value, decodeDataUriScheme, GetEncoding());
b5d4f9c156ad Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1981
diff changeset
710
1979
9e0f408db796 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1956
diff changeset
711 InsertInternal(dicom, element.release());
9e0f408db796 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1956
diff changeset
712 UpdateStorageUid(tag, utf8Value, false);
9e0f408db796 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1956
diff changeset
713 }
1693
558b25228a23 creation of tag hierarchy from json
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1689
diff changeset
714 }
558b25228a23 creation of tag hierarchy from json
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1689
diff changeset
715
558b25228a23 creation of tag hierarchy from json
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1689
diff changeset
716
558b25228a23 creation of tag hierarchy from json
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1689
diff changeset
717 void ParsedDicomFile::Replace(const DicomTag& tag,
558b25228a23 creation of tag hierarchy from json
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1689
diff changeset
718 const Json::Value& value,
1818
1065401501fb ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1805
diff changeset
719 bool decodeDataUriScheme,
1693
558b25228a23 creation of tag hierarchy from json
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1689
diff changeset
720 DicomReplaceMode mode)
558b25228a23 creation of tag hierarchy from json
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1689
diff changeset
721 {
1924
6c73df12ca51 New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1913
diff changeset
722 InvalidateCache();
6c73df12ca51 New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1913
diff changeset
723
1982
b5d4f9c156ad Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1981
diff changeset
724 DcmDataset& dicom = *pimpl_->file_->getDataset();
b5d4f9c156ad Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1981
diff changeset
725 if (CanReplaceProceed(dicom, ToDcmtkBridge::Convert(tag), mode))
b5d4f9c156ad Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1981
diff changeset
726 {
b5d4f9c156ad Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1981
diff changeset
727 // Either the tag was previously existing (and now removed), or
b5d4f9c156ad Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1981
diff changeset
728 // the replace mode was set to "InsertIfAbsent"
1693
558b25228a23 creation of tag hierarchy from json
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1689
diff changeset
729
1982
b5d4f9c156ad Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1981
diff changeset
730 if (decodeDataUriScheme &&
b5d4f9c156ad Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1981
diff changeset
731 value.type() == Json::stringValue &&
b5d4f9c156ad Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1981
diff changeset
732 (tag == DICOM_TAG_ENCAPSULATED_DOCUMENT ||
b5d4f9c156ad Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1981
diff changeset
733 tag == DICOM_TAG_PIXEL_DATA))
b5d4f9c156ad Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1981
diff changeset
734 {
b5d4f9c156ad Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1981
diff changeset
735 if (EmbedContentInternal(value.asString()))
b5d4f9c156ad Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1981
diff changeset
736 {
b5d4f9c156ad Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1981
diff changeset
737 return;
b5d4f9c156ad Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1981
diff changeset
738 }
b5d4f9c156ad Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1981
diff changeset
739 }
b5d4f9c156ad Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1981
diff changeset
740
b5d4f9c156ad Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1981
diff changeset
741 InsertInternal(dicom, FromDcmtkBridge::FromJson(tag, value, decodeDataUriScheme, GetEncoding()));
1979
9e0f408db796 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1956
diff changeset
742
9e0f408db796 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1956
diff changeset
743 if (tag == DICOM_TAG_SOP_CLASS_UID ||
9e0f408db796 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1956
diff changeset
744 tag == DICOM_TAG_SOP_INSTANCE_UID)
1693
558b25228a23 creation of tag hierarchy from json
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1689
diff changeset
745 {
1979
9e0f408db796 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1956
diff changeset
746 if (value.type() != Json::stringValue)
9e0f408db796 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1956
diff changeset
747 {
9e0f408db796 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1956
diff changeset
748 throw OrthancException(ErrorCode_BadParameterType);
9e0f408db796 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1956
diff changeset
749 }
9e0f408db796 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1956
diff changeset
750
9e0f408db796 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1956
diff changeset
751 UpdateStorageUid(tag, value.asString(), decodeDataUriScheme);
1693
558b25228a23 creation of tag hierarchy from json
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1689
diff changeset
752 }
790
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
753 }
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
754 }
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
755
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
756
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
757 void ParsedDicomFile::Answer(RestApiOutput& output)
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
758 {
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
759 std::string serialized;
1004
a226e0959d8b DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 991
diff changeset
760 if (FromDcmtkBridge::SaveToMemoryBuffer(serialized, *pimpl_->file_->getDataset()))
790
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
761 {
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
762 output.AnswerBuffer(serialized, CONTENT_TYPE_OCTET_STREAM);
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
763 }
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
764 }
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
765
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
766
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
767
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
768 bool ParsedDicomFile::GetTagValue(std::string& value,
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
769 const DicomTag& tag)
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
770 {
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
771 DcmTagKey k(tag.GetGroup(), tag.GetElement());
794
437c4a83d2cc refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 793
diff changeset
772 DcmDataset& dataset = *pimpl_->file_->getDataset();
1307
f796207e3df1 Fix replacement and insertion of private DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1288
diff changeset
773
1818
1065401501fb ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1805
diff changeset
774 if (tag.IsPrivate() ||
1655
e40fd0d925c5 /tools/create-dicom can create tags with unknown VR
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1641
diff changeset
775 FromDcmtkBridge::IsUnknownTag(tag) ||
1556
b8dc2f855a83 Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1555
diff changeset
776 tag == DICOM_TAG_PIXEL_DATA ||
b8dc2f855a83 Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1555
diff changeset
777 tag == DICOM_TAG_ENCAPSULATED_DOCUMENT)
790
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
778 {
1307
f796207e3df1 Fix replacement and insertion of private DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1288
diff changeset
779 const Uint8* data = NULL; // This is freed in the destructor of the dataset
f796207e3df1 Fix replacement and insertion of private DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1288
diff changeset
780 long unsigned int count = 0;
790
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
781
1307
f796207e3df1 Fix replacement and insertion of private DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1288
diff changeset
782 if (dataset.findAndGetUint8Array(k, data, &count).good())
f796207e3df1 Fix replacement and insertion of private DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1288
diff changeset
783 {
f796207e3df1 Fix replacement and insertion of private DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1288
diff changeset
784 if (count > 0)
f796207e3df1 Fix replacement and insertion of private DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1288
diff changeset
785 {
f796207e3df1 Fix replacement and insertion of private DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1288
diff changeset
786 assert(data != NULL);
f796207e3df1 Fix replacement and insertion of private DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1288
diff changeset
787 value.assign(reinterpret_cast<const char*>(data), count);
f796207e3df1 Fix replacement and insertion of private DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1288
diff changeset
788 }
f796207e3df1 Fix replacement and insertion of private DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1288
diff changeset
789 else
f796207e3df1 Fix replacement and insertion of private DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1288
diff changeset
790 {
f796207e3df1 Fix replacement and insertion of private DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1288
diff changeset
791 value.clear();
f796207e3df1 Fix replacement and insertion of private DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1288
diff changeset
792 }
790
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
793
1307
f796207e3df1 Fix replacement and insertion of private DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1288
diff changeset
794 return true;
f796207e3df1 Fix replacement and insertion of private DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1288
diff changeset
795 }
f796207e3df1 Fix replacement and insertion of private DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1288
diff changeset
796 else
f796207e3df1 Fix replacement and insertion of private DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1288
diff changeset
797 {
f796207e3df1 Fix replacement and insertion of private DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1288
diff changeset
798 return false;
f796207e3df1 Fix replacement and insertion of private DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1288
diff changeset
799 }
790
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
800 }
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
801 else
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
802 {
1307
f796207e3df1 Fix replacement and insertion of private DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1288
diff changeset
803 DcmElement* element = NULL;
f796207e3df1 Fix replacement and insertion of private DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1288
diff changeset
804 if (!dataset.findAndGetElement(k, element).good() ||
f796207e3df1 Fix replacement and insertion of private DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1288
diff changeset
805 element == NULL)
f796207e3df1 Fix replacement and insertion of private DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1288
diff changeset
806 {
f796207e3df1 Fix replacement and insertion of private DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1288
diff changeset
807 return false;
f796207e3df1 Fix replacement and insertion of private DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1288
diff changeset
808 }
f796207e3df1 Fix replacement and insertion of private DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1288
diff changeset
809
1736
b953c6eef28d ToJson: IncludePrivateTags and IncludeUnknownTags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1735
diff changeset
810 std::auto_ptr<DicomValue> v(FromDcmtkBridge::ConvertLeafElement
1929
cda5b0ab4ce5 ORTHANC_MAXIMUM_TAG_LENGTH made explicit
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1928
diff changeset
811 (*element, DicomToJsonFlags_Default,
cda5b0ab4ce5 ORTHANC_MAXIMUM_TAG_LENGTH made explicit
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1928
diff changeset
812 ORTHANC_MAXIMUM_TAG_LENGTH, GetEncoding()));
1556
b8dc2f855a83 Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1555
diff changeset
813
1737
ec66a16aa398 removal of DicomStringValue and DicomNullValue
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1736
diff changeset
814 if (v.get() == NULL ||
ec66a16aa398 removal of DicomStringValue and DicomNullValue
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1736
diff changeset
815 v->IsNull())
1307
f796207e3df1 Fix replacement and insertion of private DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1288
diff changeset
816 {
f796207e3df1 Fix replacement and insertion of private DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1288
diff changeset
817 value = "";
f796207e3df1 Fix replacement and insertion of private DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1288
diff changeset
818 }
f796207e3df1 Fix replacement and insertion of private DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1288
diff changeset
819 else
f796207e3df1 Fix replacement and insertion of private DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1288
diff changeset
820 {
1737
ec66a16aa398 removal of DicomStringValue and DicomNullValue
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1736
diff changeset
821 // TODO v->IsBinary()
ec66a16aa398 removal of DicomStringValue and DicomNullValue
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1736
diff changeset
822 value = v->GetContent();
1307
f796207e3df1 Fix replacement and insertion of private DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1288
diff changeset
823 }
1556
b8dc2f855a83 Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1555
diff changeset
824
1307
f796207e3df1 Fix replacement and insertion of private DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1288
diff changeset
825 return true;
790
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
826 }
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
827 }
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
828
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
829
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
830 DicomInstanceHasher ParsedDicomFile::GetHasher()
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
831 {
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
832 std::string patientId, studyUid, seriesUid, instanceUid;
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
833
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
834 if (!GetTagValue(patientId, DICOM_TAG_PATIENT_ID) ||
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
835 !GetTagValue(studyUid, DICOM_TAG_STUDY_INSTANCE_UID) ||
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
836 !GetTagValue(seriesUid, DICOM_TAG_SERIES_INSTANCE_UID) ||
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
837 !GetTagValue(instanceUid, DICOM_TAG_SOP_INSTANCE_UID))
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
838 {
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
839 throw OrthancException(ErrorCode_BadFileFormat);
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
840 }
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
841
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
842 return DicomInstanceHasher(patientId, studyUid, seriesUid, instanceUid);
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
843 }
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
844
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
845
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
846 void ParsedDicomFile::SaveToMemoryBuffer(std::string& buffer)
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
847 {
1004
a226e0959d8b DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 991
diff changeset
848 FromDcmtkBridge::SaveToMemoryBuffer(buffer, *pimpl_->file_->getDataset());
790
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
849 }
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
850
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
851
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
852 void ParsedDicomFile::SaveToFile(const std::string& path)
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
853 {
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
854 // TODO Avoid using a temporary memory buffer, write directly on disk
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
855 std::string content;
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
856 SaveToMemoryBuffer(content);
2140
aa4b8895cd23 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2131
diff changeset
857 SystemToolbox::WriteFile(content, path);
790
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
858 }
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
859
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
860
1805
f08978b1f45b c-find scu for modality worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1800
diff changeset
861 ParsedDicomFile::ParsedDicomFile(bool createIdentifiers) : pimpl_(new PImpl)
790
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
862 {
794
437c4a83d2cc refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 793
diff changeset
863 pimpl_->file_.reset(new DcmFileFormat);
1805
f08978b1f45b c-find scu for modality worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1800
diff changeset
864
f08978b1f45b c-find scu for modality worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1800
diff changeset
865 if (createIdentifiers)
f08978b1f45b c-find scu for modality worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1800
diff changeset
866 {
1982
b5d4f9c156ad Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1981
diff changeset
867 ReplacePlainString(DICOM_TAG_PATIENT_ID, FromDcmtkBridge::GenerateUniqueIdentifier(ResourceType_Patient));
b5d4f9c156ad Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1981
diff changeset
868 ReplacePlainString(DICOM_TAG_STUDY_INSTANCE_UID, FromDcmtkBridge::GenerateUniqueIdentifier(ResourceType_Study));
b5d4f9c156ad Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1981
diff changeset
869 ReplacePlainString(DICOM_TAG_SERIES_INSTANCE_UID, FromDcmtkBridge::GenerateUniqueIdentifier(ResourceType_Series));
b5d4f9c156ad Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1981
diff changeset
870 ReplacePlainString(DICOM_TAG_SOP_INSTANCE_UID, FromDcmtkBridge::GenerateUniqueIdentifier(ResourceType_Instance));
1805
f08978b1f45b c-find scu for modality worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1800
diff changeset
871 }
790
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
872 }
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
873
791
381f90e2b69d refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 790
diff changeset
874
2202
9b373b7d6713 Fix handling of encodings in C-FIND requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2142
diff changeset
875 void ParsedDicomFile::CreateFromDicomMap(const DicomMap& source,
9b373b7d6713 Fix handling of encodings in C-FIND requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2142
diff changeset
876 Encoding defaultEncoding)
1786
164d78911382 primitives to handle dicom worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1781
diff changeset
877 {
2202
9b373b7d6713 Fix handling of encodings in C-FIND requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2142
diff changeset
878 pimpl_->file_.reset(new DcmFileFormat);
9b373b7d6713 Fix handling of encodings in C-FIND requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2142
diff changeset
879
9b373b7d6713 Fix handling of encodings in C-FIND requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2142
diff changeset
880 const DicomValue* tmp = source.TestAndGetValue(DICOM_TAG_SPECIFIC_CHARACTER_SET);
9b373b7d6713 Fix handling of encodings in C-FIND requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2142
diff changeset
881 if (tmp != NULL)
9b373b7d6713 Fix handling of encodings in C-FIND requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2142
diff changeset
882 {
9b373b7d6713 Fix handling of encodings in C-FIND requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2142
diff changeset
883 Encoding encoding;
9b373b7d6713 Fix handling of encodings in C-FIND requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2142
diff changeset
884 if (tmp->IsNull() ||
9b373b7d6713 Fix handling of encodings in C-FIND requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2142
diff changeset
885 tmp->IsBinary() ||
9b373b7d6713 Fix handling of encodings in C-FIND requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2142
diff changeset
886 !GetDicomEncoding(encoding, tmp->GetContent().c_str()))
9b373b7d6713 Fix handling of encodings in C-FIND requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2142
diff changeset
887 {
9b373b7d6713 Fix handling of encodings in C-FIND requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2142
diff changeset
888 throw OrthancException(ErrorCode_ParameterOutOfRange);
9b373b7d6713 Fix handling of encodings in C-FIND requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2142
diff changeset
889 }
9b373b7d6713 Fix handling of encodings in C-FIND requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2142
diff changeset
890 else
9b373b7d6713 Fix handling of encodings in C-FIND requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2142
diff changeset
891 {
9b373b7d6713 Fix handling of encodings in C-FIND requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2142
diff changeset
892 SetEncoding(encoding);
9b373b7d6713 Fix handling of encodings in C-FIND requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2142
diff changeset
893 }
9b373b7d6713 Fix handling of encodings in C-FIND requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2142
diff changeset
894 }
9b373b7d6713 Fix handling of encodings in C-FIND requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2142
diff changeset
895 else
9b373b7d6713 Fix handling of encodings in C-FIND requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2142
diff changeset
896 {
9b373b7d6713 Fix handling of encodings in C-FIND requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2142
diff changeset
897 SetEncoding(defaultEncoding);
9b373b7d6713 Fix handling of encodings in C-FIND requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2142
diff changeset
898 }
1787
1b1d5470233f refactoring of DicomFindAnswers
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1786
diff changeset
899
2202
9b373b7d6713 Fix handling of encodings in C-FIND requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2142
diff changeset
900 for (DicomMap::Map::const_iterator
9b373b7d6713 Fix handling of encodings in C-FIND requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2142
diff changeset
901 it = source.map_.begin(); it != source.map_.end(); ++it)
9b373b7d6713 Fix handling of encodings in C-FIND requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2142
diff changeset
902 {
9b373b7d6713 Fix handling of encodings in C-FIND requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2142
diff changeset
903 if (it->first != DICOM_TAG_SPECIFIC_CHARACTER_SET &&
9b373b7d6713 Fix handling of encodings in C-FIND requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2142
diff changeset
904 !it->second->IsNull())
9b373b7d6713 Fix handling of encodings in C-FIND requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2142
diff changeset
905 {
9b373b7d6713 Fix handling of encodings in C-FIND requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2142
diff changeset
906 ReplacePlainString(it->first, it->second->GetContent());
9b373b7d6713 Fix handling of encodings in C-FIND requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2142
diff changeset
907 }
9b373b7d6713 Fix handling of encodings in C-FIND requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2142
diff changeset
908 }
9b373b7d6713 Fix handling of encodings in C-FIND requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2142
diff changeset
909 }
9b373b7d6713 Fix handling of encodings in C-FIND requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2142
diff changeset
910
1787
1b1d5470233f refactoring of DicomFindAnswers
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1786
diff changeset
911
2202
9b373b7d6713 Fix handling of encodings in C-FIND requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2142
diff changeset
912 ParsedDicomFile::ParsedDicomFile(const DicomMap& map,
9b373b7d6713 Fix handling of encodings in C-FIND requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2142
diff changeset
913 Encoding defaultEncoding) :
9b373b7d6713 Fix handling of encodings in C-FIND requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2142
diff changeset
914 pimpl_(new PImpl)
9b373b7d6713 Fix handling of encodings in C-FIND requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2142
diff changeset
915 {
9b373b7d6713 Fix handling of encodings in C-FIND requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2142
diff changeset
916 CreateFromDicomMap(map, defaultEncoding);
9b373b7d6713 Fix handling of encodings in C-FIND requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2142
diff changeset
917 }
9b373b7d6713 Fix handling of encodings in C-FIND requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2142
diff changeset
918
9b373b7d6713 Fix handling of encodings in C-FIND requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2142
diff changeset
919
9b373b7d6713 Fix handling of encodings in C-FIND requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2142
diff changeset
920 ParsedDicomFile::ParsedDicomFile(const DicomMap& map) :
9b373b7d6713 Fix handling of encodings in C-FIND requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2142
diff changeset
921 pimpl_(new PImpl)
9b373b7d6713 Fix handling of encodings in C-FIND requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2142
diff changeset
922 {
9b373b7d6713 Fix handling of encodings in C-FIND requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2142
diff changeset
923 CreateFromDicomMap(map, Configuration::GetDefaultEncoding());
1786
164d78911382 primitives to handle dicom worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1781
diff changeset
924 }
164d78911382 primitives to handle dicom worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1781
diff changeset
925
164d78911382 primitives to handle dicom worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1781
diff changeset
926
1800
30e97a1f4093 callback for handling worklists with plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1788
diff changeset
927 ParsedDicomFile::ParsedDicomFile(const void* content,
30e97a1f4093 callback for handling worklists with plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1788
diff changeset
928 size_t size) : pimpl_(new PImpl)
791
381f90e2b69d refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 790
diff changeset
929 {
1935
e251606c1433 FromDcmtkBridge::LoadFromMemoryBuffer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1934
diff changeset
930 pimpl_->file_.reset(FromDcmtkBridge::LoadFromMemoryBuffer(content, size));
791
381f90e2b69d refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 790
diff changeset
931 }
381f90e2b69d refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 790
diff changeset
932
794
437c4a83d2cc refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 793
diff changeset
933 ParsedDicomFile::ParsedDicomFile(const std::string& content) : pimpl_(new PImpl)
791
381f90e2b69d refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 790
diff changeset
934 {
381f90e2b69d refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 790
diff changeset
935 if (content.size() == 0)
381f90e2b69d refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 790
diff changeset
936 {
1935
e251606c1433 FromDcmtkBridge::LoadFromMemoryBuffer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1934
diff changeset
937 pimpl_->file_.reset(FromDcmtkBridge::LoadFromMemoryBuffer(NULL, 0));
791
381f90e2b69d refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 790
diff changeset
938 }
381f90e2b69d refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 790
diff changeset
939 else
381f90e2b69d refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 790
diff changeset
940 {
1935
e251606c1433 FromDcmtkBridge::LoadFromMemoryBuffer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1934
diff changeset
941 pimpl_->file_.reset(FromDcmtkBridge::LoadFromMemoryBuffer(&content[0], content.size()));
791
381f90e2b69d refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 790
diff changeset
942 }
381f90e2b69d refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 790
diff changeset
943 }
792
111a1738e11e refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 791
diff changeset
944
111a1738e11e refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 791
diff changeset
945
794
437c4a83d2cc refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 793
diff changeset
946 ParsedDicomFile::ParsedDicomFile(ParsedDicomFile& other) :
437c4a83d2cc refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 793
diff changeset
947 pimpl_(new PImpl)
792
111a1738e11e refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 791
diff changeset
948 {
794
437c4a83d2cc refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 793
diff changeset
949 pimpl_->file_.reset(dynamic_cast<DcmFileFormat*>(other.pimpl_->file_->clone()));
956
2fd5a163776d primitives for proper encoding handling
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 874
diff changeset
950
1564
1b7def486e62 creation of DICOM series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1562
diff changeset
951 // Create a new instance-level identifier
1982
b5d4f9c156ad Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1981
diff changeset
952 ReplacePlainString(DICOM_TAG_SOP_INSTANCE_UID, FromDcmtkBridge::GenerateUniqueIdentifier(ResourceType_Instance));
792
111a1738e11e refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 791
diff changeset
953 }
111a1738e11e refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 791
diff changeset
954
111a1738e11e refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 791
diff changeset
955
1788
6a2d507ef064 getting rid of opaque data structures
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1787
diff changeset
956 ParsedDicomFile::ParsedDicomFile(DcmDataset& dicom) : pimpl_(new PImpl)
6a2d507ef064 getting rid of opaque data structures
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1787
diff changeset
957 {
6a2d507ef064 getting rid of opaque data structures
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1787
diff changeset
958 pimpl_->file_.reset(new DcmFileFormat(&dicom));
6a2d507ef064 getting rid of opaque data structures
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1787
diff changeset
959 }
6a2d507ef064 getting rid of opaque data structures
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1787
diff changeset
960
6a2d507ef064 getting rid of opaque data structures
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1787
diff changeset
961
6a2d507ef064 getting rid of opaque data structures
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1787
diff changeset
962 ParsedDicomFile::ParsedDicomFile(DcmFileFormat& dicom) : pimpl_(new PImpl)
6a2d507ef064 getting rid of opaque data structures
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1787
diff changeset
963 {
6a2d507ef064 getting rid of opaque data structures
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1787
diff changeset
964 pimpl_->file_.reset(new DcmFileFormat(dicom));
6a2d507ef064 getting rid of opaque data structures
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1787
diff changeset
965 }
6a2d507ef064 getting rid of opaque data structures
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1787
diff changeset
966
6a2d507ef064 getting rid of opaque data structures
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1787
diff changeset
967
792
111a1738e11e refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 791
diff changeset
968 ParsedDicomFile::~ParsedDicomFile()
111a1738e11e refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 791
diff changeset
969 {
794
437c4a83d2cc refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 793
diff changeset
970 delete pimpl_;
792
111a1738e11e refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 791
diff changeset
971 }
111a1738e11e refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 791
diff changeset
972
793
145604a97914 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 792
diff changeset
973
1824
b530c3dfe2a6 refactoring image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1818
diff changeset
974 DcmFileFormat& ParsedDicomFile::GetDcmtkObject() const
793
145604a97914 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 792
diff changeset
975 {
1788
6a2d507ef064 getting rid of opaque data structures
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1787
diff changeset
976 return *pimpl_->file_.get();
793
145604a97914 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 792
diff changeset
977 }
145604a97914 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 792
diff changeset
978
145604a97914 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 792
diff changeset
979
145604a97914 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 792
diff changeset
980 ParsedDicomFile* ParsedDicomFile::Clone()
145604a97914 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 792
diff changeset
981 {
794
437c4a83d2cc refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 793
diff changeset
982 return new ParsedDicomFile(*this);
793
145604a97914 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 792
diff changeset
983 }
800
ecedd89055db generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 799
diff changeset
984
ecedd89055db generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 799
diff changeset
985
1982
b5d4f9c156ad Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1981
diff changeset
986 bool ParsedDicomFile::EmbedContentInternal(const std::string& dataUriScheme)
800
ecedd89055db generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 799
diff changeset
987 {
1641
4e56b5a206b7 Support of binary tags encoded using data URI scheme
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1616
diff changeset
988 std::string mime, content;
1981
4b545a8b1f95 return code in Toolbox::DecodeDataUriScheme
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1980
diff changeset
989 if (!Toolbox::DecodeDataUriScheme(mime, content, dataUriScheme))
4b545a8b1f95 return code in Toolbox::DecodeDataUriScheme
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1980
diff changeset
990 {
1982
b5d4f9c156ad Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1981
diff changeset
991 return false;
1981
4b545a8b1f95 return code in Toolbox::DecodeDataUriScheme
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1980
diff changeset
992 }
4b545a8b1f95 return code in Toolbox::DecodeDataUriScheme
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1980
diff changeset
993
1562
2084b7c20478 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1558
diff changeset
994 Toolbox::ToLowerCase(mime);
1555
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1523
diff changeset
995
1781
5ad4e4d92ecb AcceptMediaDispatcher bootstrap
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1737
diff changeset
996 if (mime == "image/png" ||
5ad4e4d92ecb AcceptMediaDispatcher bootstrap
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1737
diff changeset
997 mime == "image/jpeg")
1562
2084b7c20478 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1558
diff changeset
998 {
2084b7c20478 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1558
diff changeset
999 EmbedImage(mime, content);
2084b7c20478 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1558
diff changeset
1000 }
2084b7c20478 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1558
diff changeset
1001 else if (mime == "application/pdf")
2084b7c20478 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1558
diff changeset
1002 {
2084b7c20478 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1558
diff changeset
1003 EmbedPdf(content);
2084b7c20478 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1558
diff changeset
1004 }
2084b7c20478 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1558
diff changeset
1005 else
2084b7c20478 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1558
diff changeset
1006 {
1693
558b25228a23 creation of tag hierarchy from json
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1689
diff changeset
1007 LOG(ERROR) << "Unsupported MIME type for the content of a new DICOM file: " << mime;
1562
2084b7c20478 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1558
diff changeset
1008 throw OrthancException(ErrorCode_NotImplemented);
2084b7c20478 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1558
diff changeset
1009 }
1982
b5d4f9c156ad Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1981
diff changeset
1010
b5d4f9c156ad Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1981
diff changeset
1011 return true;
b5d4f9c156ad Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1981
diff changeset
1012 }
b5d4f9c156ad Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1981
diff changeset
1013
b5d4f9c156ad Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1981
diff changeset
1014
b5d4f9c156ad Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1981
diff changeset
1015 void ParsedDicomFile::EmbedContent(const std::string& dataUriScheme)
b5d4f9c156ad Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1981
diff changeset
1016 {
b5d4f9c156ad Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1981
diff changeset
1017 if (!EmbedContentInternal(dataUriScheme))
b5d4f9c156ad Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1981
diff changeset
1018 {
b5d4f9c156ad Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1981
diff changeset
1019 throw OrthancException(ErrorCode_BadFileFormat);
b5d4f9c156ad Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1981
diff changeset
1020 }
1555
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1523
diff changeset
1021 }
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1523
diff changeset
1022
800
ecedd89055db generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 799
diff changeset
1023
1555
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1523
diff changeset
1024 void ParsedDicomFile::EmbedImage(const std::string& mime,
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1523
diff changeset
1025 const std::string& content)
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1523
diff changeset
1026 {
800
ecedd89055db generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 799
diff changeset
1027 if (mime == "image/png")
ecedd89055db generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 799
diff changeset
1028 {
ecedd89055db generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 799
diff changeset
1029 PngReader reader;
1555
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1523
diff changeset
1030 reader.ReadFromMemory(content);
800
ecedd89055db generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 799
diff changeset
1031 EmbedImage(reader);
ecedd89055db generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 799
diff changeset
1032 }
1781
5ad4e4d92ecb AcceptMediaDispatcher bootstrap
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1737
diff changeset
1033 else if (mime == "image/jpeg")
5ad4e4d92ecb AcceptMediaDispatcher bootstrap
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1737
diff changeset
1034 {
5ad4e4d92ecb AcceptMediaDispatcher bootstrap
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1737
diff changeset
1035 JpegReader reader;
5ad4e4d92ecb AcceptMediaDispatcher bootstrap
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1737
diff changeset
1036 reader.ReadFromMemory(content);
5ad4e4d92ecb AcceptMediaDispatcher bootstrap
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1737
diff changeset
1037 EmbedImage(reader);
5ad4e4d92ecb AcceptMediaDispatcher bootstrap
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1737
diff changeset
1038 }
800
ecedd89055db generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 799
diff changeset
1039 else
ecedd89055db generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 799
diff changeset
1040 {
ecedd89055db generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 799
diff changeset
1041 throw OrthancException(ErrorCode_NotImplemented);
ecedd89055db generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 799
diff changeset
1042 }
ecedd89055db generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 799
diff changeset
1043 }
ecedd89055db generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 799
diff changeset
1044
ecedd89055db generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 799
diff changeset
1045
ecedd89055db generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 799
diff changeset
1046 void ParsedDicomFile::EmbedImage(const ImageAccessor& accessor)
ecedd89055db generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 799
diff changeset
1047 {
ecedd89055db generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 799
diff changeset
1048 if (accessor.GetFormat() != PixelFormat_Grayscale8 &&
ecedd89055db generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 799
diff changeset
1049 accessor.GetFormat() != PixelFormat_Grayscale16 &&
1941
d7b176f7dd1b test dicom patterns
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1935
diff changeset
1050 accessor.GetFormat() != PixelFormat_SignedGrayscale16 &&
800
ecedd89055db generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 799
diff changeset
1051 accessor.GetFormat() != PixelFormat_RGB24 &&
ecedd89055db generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 799
diff changeset
1052 accessor.GetFormat() != PixelFormat_RGBA32)
ecedd89055db generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 799
diff changeset
1053 {
ecedd89055db generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 799
diff changeset
1054 throw OrthancException(ErrorCode_NotImplemented);
ecedd89055db generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 799
diff changeset
1055 }
ecedd89055db generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 799
diff changeset
1056
1982
b5d4f9c156ad Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1981
diff changeset
1057 InvalidateCache();
b5d4f9c156ad Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1981
diff changeset
1058
800
ecedd89055db generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 799
diff changeset
1059 if (accessor.GetFormat() == PixelFormat_RGBA32)
ecedd89055db generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 799
diff changeset
1060 {
ecedd89055db generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 799
diff changeset
1061 LOG(WARNING) << "Getting rid of the alpha channel when embedding a RGBA image inside DICOM";
ecedd89055db generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 799
diff changeset
1062 }
ecedd89055db generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 799
diff changeset
1063
ecedd89055db generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 799
diff changeset
1064 // http://dicomiseasy.blogspot.be/2012/08/chapter-12-pixel-data.html
ecedd89055db generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 799
diff changeset
1065
ecedd89055db generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 799
diff changeset
1066 Remove(DICOM_TAG_PIXEL_DATA);
1982
b5d4f9c156ad Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1981
diff changeset
1067 ReplacePlainString(DICOM_TAG_COLUMNS, boost::lexical_cast<std::string>(accessor.GetWidth()));
b5d4f9c156ad Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1981
diff changeset
1068 ReplacePlainString(DICOM_TAG_ROWS, boost::lexical_cast<std::string>(accessor.GetHeight()));
b5d4f9c156ad Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1981
diff changeset
1069 ReplacePlainString(DICOM_TAG_SAMPLES_PER_PIXEL, "1");
b5d4f9c156ad Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1981
diff changeset
1070 ReplacePlainString(DICOM_TAG_NUMBER_OF_FRAMES, "1");
1941
d7b176f7dd1b test dicom patterns
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1935
diff changeset
1071
d7b176f7dd1b test dicom patterns
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1935
diff changeset
1072 if (accessor.GetFormat() == PixelFormat_SignedGrayscale16)
d7b176f7dd1b test dicom patterns
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1935
diff changeset
1073 {
1982
b5d4f9c156ad Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1981
diff changeset
1074 ReplacePlainString(DICOM_TAG_PIXEL_REPRESENTATION, "1");
1941
d7b176f7dd1b test dicom patterns
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1935
diff changeset
1075 }
d7b176f7dd1b test dicom patterns
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1935
diff changeset
1076 else
d7b176f7dd1b test dicom patterns
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1935
diff changeset
1077 {
1982
b5d4f9c156ad Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1981
diff changeset
1078 ReplacePlainString(DICOM_TAG_PIXEL_REPRESENTATION, "0"); // Unsigned pixels
1941
d7b176f7dd1b test dicom patterns
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1935
diff changeset
1079 }
d7b176f7dd1b test dicom patterns
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1935
diff changeset
1080
1982
b5d4f9c156ad Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1981
diff changeset
1081 ReplacePlainString(DICOM_TAG_PLANAR_CONFIGURATION, "0"); // Color channels are interleaved
b5d4f9c156ad Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1981
diff changeset
1082 ReplacePlainString(DICOM_TAG_PHOTOMETRIC_INTERPRETATION, "MONOCHROME2");
800
ecedd89055db generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 799
diff changeset
1083
1941
d7b176f7dd1b test dicom patterns
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1935
diff changeset
1084 unsigned int bytesPerPixel = 0;
800
ecedd89055db generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 799
diff changeset
1085
ecedd89055db generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 799
diff changeset
1086 switch (accessor.GetFormat())
ecedd89055db generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 799
diff changeset
1087 {
1941
d7b176f7dd1b test dicom patterns
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1935
diff changeset
1088 case PixelFormat_Grayscale8:
1982
b5d4f9c156ad Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1981
diff changeset
1089 ReplacePlainString(DICOM_TAG_BITS_ALLOCATED, "8");
b5d4f9c156ad Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1981
diff changeset
1090 ReplacePlainString(DICOM_TAG_BITS_STORED, "8");
b5d4f9c156ad Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1981
diff changeset
1091 ReplacePlainString(DICOM_TAG_HIGH_BIT, "7");
1941
d7b176f7dd1b test dicom patterns
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1935
diff changeset
1092 bytesPerPixel = 1;
d7b176f7dd1b test dicom patterns
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1935
diff changeset
1093 break;
d7b176f7dd1b test dicom patterns
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1935
diff changeset
1094
800
ecedd89055db generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 799
diff changeset
1095 case PixelFormat_RGB24:
ecedd89055db generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 799
diff changeset
1096 case PixelFormat_RGBA32:
1982
b5d4f9c156ad Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1981
diff changeset
1097 ReplacePlainString(DICOM_TAG_PHOTOMETRIC_INTERPRETATION, "RGB");
b5d4f9c156ad Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1981
diff changeset
1098 ReplacePlainString(DICOM_TAG_SAMPLES_PER_PIXEL, "3");
b5d4f9c156ad Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1981
diff changeset
1099 ReplacePlainString(DICOM_TAG_BITS_ALLOCATED, "8");
b5d4f9c156ad Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1981
diff changeset
1100 ReplacePlainString(DICOM_TAG_BITS_STORED, "8");
b5d4f9c156ad Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1981
diff changeset
1101 ReplacePlainString(DICOM_TAG_HIGH_BIT, "7");
800
ecedd89055db generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 799
diff changeset
1102 bytesPerPixel = 3;
ecedd89055db generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 799
diff changeset
1103 break;
ecedd89055db generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 799
diff changeset
1104
ecedd89055db generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 799
diff changeset
1105 case PixelFormat_Grayscale16:
1941
d7b176f7dd1b test dicom patterns
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1935
diff changeset
1106 case PixelFormat_SignedGrayscale16:
1982
b5d4f9c156ad Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1981
diff changeset
1107 ReplacePlainString(DICOM_TAG_BITS_ALLOCATED, "16");
b5d4f9c156ad Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1981
diff changeset
1108 ReplacePlainString(DICOM_TAG_BITS_STORED, "16");
b5d4f9c156ad Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1981
diff changeset
1109 ReplacePlainString(DICOM_TAG_HIGH_BIT, "15");
800
ecedd89055db generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 799
diff changeset
1110 bytesPerPixel = 2;
ecedd89055db generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 799
diff changeset
1111 break;
ecedd89055db generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 799
diff changeset
1112
ecedd89055db generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 799
diff changeset
1113 default:
ecedd89055db generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 799
diff changeset
1114 throw OrthancException(ErrorCode_NotImplemented);
ecedd89055db generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 799
diff changeset
1115 }
ecedd89055db generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 799
diff changeset
1116
1941
d7b176f7dd1b test dicom patterns
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1935
diff changeset
1117 assert(bytesPerPixel != 0);
d7b176f7dd1b test dicom patterns
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1935
diff changeset
1118
800
ecedd89055db generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 799
diff changeset
1119 DcmTag key(DICOM_TAG_PIXEL_DATA.GetGroup(),
ecedd89055db generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 799
diff changeset
1120 DICOM_TAG_PIXEL_DATA.GetElement());
ecedd89055db generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 799
diff changeset
1121
ecedd89055db generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 799
diff changeset
1122 std::auto_ptr<DcmPixelData> pixels(new DcmPixelData(key));
ecedd89055db generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 799
diff changeset
1123
ecedd89055db generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 799
diff changeset
1124 unsigned int pitch = accessor.GetWidth() * bytesPerPixel;
ecedd89055db generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 799
diff changeset
1125 Uint8* target = NULL;
ecedd89055db generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 799
diff changeset
1126 pixels->createUint8Array(accessor.GetHeight() * pitch, target);
ecedd89055db generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 799
diff changeset
1127
ecedd89055db generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 799
diff changeset
1128 for (unsigned int y = 0; y < accessor.GetHeight(); y++)
ecedd89055db generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 799
diff changeset
1129 {
ecedd89055db generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 799
diff changeset
1130 switch (accessor.GetFormat())
ecedd89055db generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 799
diff changeset
1131 {
ecedd89055db generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 799
diff changeset
1132 case PixelFormat_RGB24:
ecedd89055db generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 799
diff changeset
1133 case PixelFormat_Grayscale8:
ecedd89055db generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 799
diff changeset
1134 case PixelFormat_Grayscale16:
ecedd89055db generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 799
diff changeset
1135 case PixelFormat_SignedGrayscale16:
ecedd89055db generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 799
diff changeset
1136 {
ecedd89055db generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 799
diff changeset
1137 memcpy(target, reinterpret_cast<const Uint8*>(accessor.GetConstRow(y)), pitch);
ecedd89055db generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 799
diff changeset
1138 target += pitch;
ecedd89055db generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 799
diff changeset
1139 break;
ecedd89055db generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 799
diff changeset
1140 }
ecedd89055db generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 799
diff changeset
1141
ecedd89055db generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 799
diff changeset
1142 case PixelFormat_RGBA32:
ecedd89055db generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 799
diff changeset
1143 {
ecedd89055db generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 799
diff changeset
1144 // The alpha channel is not supported by the DICOM standard
ecedd89055db generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 799
diff changeset
1145 const Uint8* source = reinterpret_cast<const Uint8*>(accessor.GetConstRow(y));
ecedd89055db generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 799
diff changeset
1146 for (unsigned int x = 0; x < accessor.GetWidth(); x++, target += 3, source += 4)
ecedd89055db generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 799
diff changeset
1147 {
ecedd89055db generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 799
diff changeset
1148 target[0] = source[0];
ecedd89055db generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 799
diff changeset
1149 target[1] = source[1];
ecedd89055db generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 799
diff changeset
1150 target[2] = source[2];
ecedd89055db generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 799
diff changeset
1151 }
ecedd89055db generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 799
diff changeset
1152
ecedd89055db generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 799
diff changeset
1153 break;
ecedd89055db generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 799
diff changeset
1154 }
ecedd89055db generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 799
diff changeset
1155
ecedd89055db generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 799
diff changeset
1156 default:
ecedd89055db generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 799
diff changeset
1157 throw OrthancException(ErrorCode_NotImplemented);
ecedd89055db generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 799
diff changeset
1158 }
ecedd89055db generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 799
diff changeset
1159 }
ecedd89055db generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 799
diff changeset
1160
ecedd89055db generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 799
diff changeset
1161 if (!pimpl_->file_->getDataset()->insert(pixels.release(), false, false).good())
ecedd89055db generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 799
diff changeset
1162 {
ecedd89055db generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 799
diff changeset
1163 throw OrthancException(ErrorCode_InternalError);
ecedd89055db generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 799
diff changeset
1164 }
ecedd89055db generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 799
diff changeset
1165 }
874
87791ebc1f50 download matlab images
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 853
diff changeset
1166
87791ebc1f50 download matlab images
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 853
diff changeset
1167
956
2fd5a163776d primitives for proper encoding handling
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 874
diff changeset
1168 Encoding ParsedDicomFile::GetEncoding() const
2fd5a163776d primitives for proper encoding handling
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 874
diff changeset
1169 {
1928
84c7eaeb5244 Configuration::GetDefaultEncoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1924
diff changeset
1170 return FromDcmtkBridge::DetectEncoding(*pimpl_->file_->getDataset(),
84c7eaeb5244 Configuration::GetDefaultEncoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1924
diff changeset
1171 Configuration::GetDefaultEncoding());
956
2fd5a163776d primitives for proper encoding handling
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 874
diff changeset
1172 }
1090
e494ceb8d763 support more encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1018
diff changeset
1173
e494ceb8d763 support more encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1018
diff changeset
1174
e494ceb8d763 support more encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1018
diff changeset
1175 void ParsedDicomFile::SetEncoding(Encoding encoding)
e494ceb8d763 support more encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1018
diff changeset
1176 {
1558
124de28b32ed fix encodings of newly created dicom files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1556
diff changeset
1177 if (encoding == Encoding_Windows1251)
1090
e494ceb8d763 support more encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1018
diff changeset
1178 {
1558
124de28b32ed fix encodings of newly created dicom files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1556
diff changeset
1179 // This Cyrillic codepage is not officially supported by the
124de28b32ed fix encodings of newly created dicom files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1556
diff changeset
1180 // DICOM standard. Do not set the SpecificCharacterSet tag.
124de28b32ed fix encodings of newly created dicom files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1556
diff changeset
1181 return;
1090
e494ceb8d763 support more encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1018
diff changeset
1182 }
e494ceb8d763 support more encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1018
diff changeset
1183
1565
4b23310eb7e8 add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1564
diff changeset
1184 std::string s = GetDicomSpecificCharacterSet(encoding);
1982
b5d4f9c156ad Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1981
diff changeset
1185 ReplacePlainString(DICOM_TAG_SPECIFIC_CHARACTER_SET, s);
1090
e494ceb8d763 support more encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1018
diff changeset
1186 }
e494ceb8d763 support more encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1018
diff changeset
1187
2128
9329ba17a069 Possibility to DELETE "dicom-as-json" attachments to reconstruct them
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2126
diff changeset
1188 void ParsedDicomFile::DatasetToJson(Json::Value& target,
9329ba17a069 Possibility to DELETE "dicom-as-json" attachments to reconstruct them
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2126
diff changeset
1189 DicomToJsonFormat format,
9329ba17a069 Possibility to DELETE "dicom-as-json" attachments to reconstruct them
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2126
diff changeset
1190 DicomToJsonFlags flags,
9329ba17a069 Possibility to DELETE "dicom-as-json" attachments to reconstruct them
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2126
diff changeset
1191 unsigned int maxStringLength)
1160
80671157d051 generalization of create-dicom
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1113
diff changeset
1192 {
2126
03b065778fc3 cleaning up
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2125
diff changeset
1193 FromDcmtkBridge::ExtractDicomAsJson(target, *pimpl_->file_->getDataset(),
2131
bb199bccdc45 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2128
diff changeset
1194 format, flags, maxStringLength, Configuration::GetDefaultEncoding());
1160
80671157d051 generalization of create-dicom
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1113
diff changeset
1195 }
1555
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1523
diff changeset
1196
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1523
diff changeset
1197
2128
9329ba17a069 Possibility to DELETE "dicom-as-json" attachments to reconstruct them
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2126
diff changeset
1198 void ParsedDicomFile::DatasetToJson(Json::Value& target)
9329ba17a069 Possibility to DELETE "dicom-as-json" attachments to reconstruct them
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2126
diff changeset
1199 {
2131
bb199bccdc45 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2128
diff changeset
1200 Configuration::ExtractDicomAsJson(target, *pimpl_->file_->getDataset());
2128
9329ba17a069 Possibility to DELETE "dicom-as-json" attachments to reconstruct them
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2126
diff changeset
1201 }
9329ba17a069 Possibility to DELETE "dicom-as-json" attachments to reconstruct them
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2126
diff changeset
1202
9329ba17a069 Possibility to DELETE "dicom-as-json" attachments to reconstruct them
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2126
diff changeset
1203
1831
3ae2ff249675 "/instances/.../header" to get the meta information (header) of the DICOM instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1827
diff changeset
1204 void ParsedDicomFile::HeaderToJson(Json::Value& target,
3ae2ff249675 "/instances/.../header" to get the meta information (header) of the DICOM instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1827
diff changeset
1205 DicomToJsonFormat format)
3ae2ff249675 "/instances/.../header" to get the meta information (header) of the DICOM instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1827
diff changeset
1206 {
2126
03b065778fc3 cleaning up
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2125
diff changeset
1207 FromDcmtkBridge::ExtractHeaderAsJson(target, *pimpl_->file_->getMetaInfo(), format, DicomToJsonFlags_None, 0);
1831
3ae2ff249675 "/instances/.../header" to get the meta information (header) of the DICOM instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1827
diff changeset
1208 }
3ae2ff249675 "/instances/.../header" to get the meta information (header) of the DICOM instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1827
diff changeset
1209
3ae2ff249675 "/instances/.../header" to get the meta information (header) of the DICOM instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1827
diff changeset
1210
1555
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1523
diff changeset
1211 bool ParsedDicomFile::HasTag(const DicomTag& tag) const
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1523
diff changeset
1212 {
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1523
diff changeset
1213 DcmTag key(tag.GetGroup(), tag.GetElement());
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1523
diff changeset
1214 return pimpl_->file_->getDataset()->tagExists(key);
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1523
diff changeset
1215 }
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1523
diff changeset
1216
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1523
diff changeset
1217
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1523
diff changeset
1218 void ParsedDicomFile::EmbedPdf(const std::string& pdf)
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1523
diff changeset
1219 {
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1523
diff changeset
1220 if (pdf.size() < 5 || // (*)
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1523
diff changeset
1221 strncmp("%PDF-", pdf.c_str(), 5) != 0)
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1523
diff changeset
1222 {
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1523
diff changeset
1223 LOG(ERROR) << "Not a PDF file";
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1523
diff changeset
1224 throw OrthancException(ErrorCode_BadFileFormat);
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1523
diff changeset
1225 }
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1523
diff changeset
1226
1982
b5d4f9c156ad Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1981
diff changeset
1227 InvalidateCache();
b5d4f9c156ad Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1981
diff changeset
1228
b5d4f9c156ad Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1981
diff changeset
1229 ReplacePlainString(DICOM_TAG_SOP_CLASS_UID, UID_EncapsulatedPDFStorage);
b5d4f9c156ad Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1981
diff changeset
1230 ReplacePlainString(FromDcmtkBridge::Convert(DCM_Modality), "OT");
b5d4f9c156ad Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1981
diff changeset
1231 ReplacePlainString(FromDcmtkBridge::Convert(DCM_ConversionType), "WSD");
b5d4f9c156ad Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1981
diff changeset
1232 ReplacePlainString(FromDcmtkBridge::Convert(DCM_MIMETypeOfEncapsulatedDocument), "application/pdf");
b5d4f9c156ad Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1981
diff changeset
1233 //ReplacePlainString(FromDcmtkBridge::Convert(DCM_SeriesNumber), "1");
1555
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1523
diff changeset
1234
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1523
diff changeset
1235 std::auto_ptr<DcmPolymorphOBOW> element(new DcmPolymorphOBOW(DCM_EncapsulatedDocument));
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1523
diff changeset
1236
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1523
diff changeset
1237 size_t s = pdf.size();
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1523
diff changeset
1238 if (s & 1)
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1523
diff changeset
1239 {
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1523
diff changeset
1240 // The size of the buffer must be even
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1523
diff changeset
1241 s += 1;
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1523
diff changeset
1242 }
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1523
diff changeset
1243
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1523
diff changeset
1244 Uint8* bytes = NULL;
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1523
diff changeset
1245 OFCondition result = element->createUint8Array(s, bytes);
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1523
diff changeset
1246 if (!result.good() || bytes == NULL)
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1523
diff changeset
1247 {
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1523
diff changeset
1248 throw OrthancException(ErrorCode_NotEnoughMemory);
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1523
diff changeset
1249 }
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1523
diff changeset
1250
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1523
diff changeset
1251 // Blank pad byte (no access violation, as "pdf.size() >= 5" because of (*) )
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1523
diff changeset
1252 bytes[s - 1] = 0;
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1523
diff changeset
1253
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1523
diff changeset
1254 memcpy(bytes, pdf.c_str(), pdf.size());
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1523
diff changeset
1255
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1523
diff changeset
1256 DcmPolymorphOBOW* obj = element.release();
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1523
diff changeset
1257 result = pimpl_->file_->getDataset()->insert(obj);
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1523
diff changeset
1258
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1523
diff changeset
1259 if (!result.good())
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1523
diff changeset
1260 {
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1523
diff changeset
1261 delete obj;
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1523
diff changeset
1262 throw OrthancException(ErrorCode_NotEnoughMemory);
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1523
diff changeset
1263 }
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1523
diff changeset
1264 }
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1523
diff changeset
1265
1556
b8dc2f855a83 Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1555
diff changeset
1266
b8dc2f855a83 Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1555
diff changeset
1267 bool ParsedDicomFile::ExtractPdf(std::string& pdf)
b8dc2f855a83 Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1555
diff changeset
1268 {
b8dc2f855a83 Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1555
diff changeset
1269 std::string sop, mime;
b8dc2f855a83 Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1555
diff changeset
1270
b8dc2f855a83 Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1555
diff changeset
1271 if (!GetTagValue(sop, DICOM_TAG_SOP_CLASS_UID) ||
b8dc2f855a83 Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1555
diff changeset
1272 !GetTagValue(mime, FromDcmtkBridge::Convert(DCM_MIMETypeOfEncapsulatedDocument)) ||
b8dc2f855a83 Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1555
diff changeset
1273 sop != UID_EncapsulatedPDFStorage ||
b8dc2f855a83 Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1555
diff changeset
1274 mime != "application/pdf")
b8dc2f855a83 Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1555
diff changeset
1275 {
b8dc2f855a83 Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1555
diff changeset
1276 return false;
b8dc2f855a83 Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1555
diff changeset
1277 }
b8dc2f855a83 Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1555
diff changeset
1278
b8dc2f855a83 Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1555
diff changeset
1279 if (!GetTagValue(pdf, DICOM_TAG_ENCAPSULATED_DOCUMENT))
b8dc2f855a83 Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1555
diff changeset
1280 {
b8dc2f855a83 Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1555
diff changeset
1281 return false;
b8dc2f855a83 Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1555
diff changeset
1282 }
b8dc2f855a83 Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1555
diff changeset
1283
b8dc2f855a83 Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1555
diff changeset
1284 // Strip the possible pad byte at the end of file, because the
b8dc2f855a83 Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1555
diff changeset
1285 // encapsulated documents must always have an even length. The PDF
b8dc2f855a83 Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1555
diff changeset
1286 // format expects files to end with %%EOF followed by CR/LF. If
b8dc2f855a83 Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1555
diff changeset
1287 // the last character of the file is not a CR or LF, we assume it
b8dc2f855a83 Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1555
diff changeset
1288 // is a pad byte and remove it.
b8dc2f855a83 Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1555
diff changeset
1289 if (pdf.size() > 0)
b8dc2f855a83 Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1555
diff changeset
1290 {
b8dc2f855a83 Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1555
diff changeset
1291 char last = *pdf.rbegin();
b8dc2f855a83 Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1555
diff changeset
1292
b8dc2f855a83 Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1555
diff changeset
1293 if (last != 10 && last != 13)
b8dc2f855a83 Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1555
diff changeset
1294 {
b8dc2f855a83 Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1555
diff changeset
1295 pdf.resize(pdf.size() - 1);
b8dc2f855a83 Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1555
diff changeset
1296 }
b8dc2f855a83 Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1555
diff changeset
1297 }
b8dc2f855a83 Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1555
diff changeset
1298
b8dc2f855a83 Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1555
diff changeset
1299 return true;
b8dc2f855a83 Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1555
diff changeset
1300 }
1662
09be34b2f30e ParsedDicomFile::Convert()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1655
diff changeset
1301
09be34b2f30e ParsedDicomFile::Convert()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1655
diff changeset
1302
1818
1065401501fb ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1805
diff changeset
1303 ParsedDicomFile* ParsedDicomFile::CreateFromJson(const Json::Value& json,
1065401501fb ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1805
diff changeset
1304 DicomFromJsonFlags flags)
1065401501fb ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1805
diff changeset
1305 {
2028
d108412411e5 fix msvc warnings
sjodogne
parents: 2016
diff changeset
1306 const bool generateIdentifiers = (flags & DicomFromJsonFlags_GenerateIdentifiers) ? true : false;
d108412411e5 fix msvc warnings
sjodogne
parents: 2016
diff changeset
1307 const bool decodeDataUriScheme = (flags & DicomFromJsonFlags_DecodeDataUriScheme) ? true : false;
1818
1065401501fb ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1805
diff changeset
1308
1065401501fb ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1805
diff changeset
1309 std::auto_ptr<ParsedDicomFile> result(new ParsedDicomFile(generateIdentifiers));
1934
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1929
diff changeset
1310 result->SetEncoding(FromDcmtkBridge::ExtractEncoding(json, Configuration::GetDefaultEncoding()));
1818
1065401501fb ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1805
diff changeset
1311
1934
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1929
diff changeset
1312 const Json::Value::Members tags = json.getMemberNames();
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1929
diff changeset
1313
1818
1065401501fb ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1805
diff changeset
1314 for (size_t i = 0; i < tags.size(); i++)
1065401501fb ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1805
diff changeset
1315 {
1065401501fb ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1805
diff changeset
1316 DicomTag tag = FromDcmtkBridge::ParseTag(tags[i]);
1065401501fb ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1805
diff changeset
1317 const Json::Value& value = json[tags[i]];
1065401501fb ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1805
diff changeset
1318
1065401501fb ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1805
diff changeset
1319 if (tag == DICOM_TAG_PIXEL_DATA ||
1065401501fb ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1805
diff changeset
1320 tag == DICOM_TAG_ENCAPSULATED_DOCUMENT)
1065401501fb ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1805
diff changeset
1321 {
1065401501fb ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1805
diff changeset
1322 if (value.type() != Json::stringValue)
1065401501fb ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1805
diff changeset
1323 {
1065401501fb ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1805
diff changeset
1324 throw OrthancException(ErrorCode_BadRequest);
1065401501fb ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1805
diff changeset
1325 }
1065401501fb ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1805
diff changeset
1326 else
1065401501fb ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1805
diff changeset
1327 {
1065401501fb ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1805
diff changeset
1328 result->EmbedContent(value.asString());
1065401501fb ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1805
diff changeset
1329 }
1065401501fb ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1805
diff changeset
1330 }
1065401501fb ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1805
diff changeset
1331 else if (tag != DICOM_TAG_SPECIFIC_CHARACTER_SET)
1065401501fb ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1805
diff changeset
1332 {
1982
b5d4f9c156ad Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1981
diff changeset
1333 result->Replace(tag, value, decodeDataUriScheme, DicomReplaceMode_InsertIfAbsent);
1818
1065401501fb ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1805
diff changeset
1334 }
1065401501fb ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1805
diff changeset
1335 }
1065401501fb ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1805
diff changeset
1336
1065401501fb ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1805
diff changeset
1337 return result.release();
1065401501fb ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1805
diff changeset
1338 }
1924
6c73df12ca51 New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1913
diff changeset
1339
6c73df12ca51 New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1913
diff changeset
1340
6c73df12ca51 New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1913
diff changeset
1341 void ParsedDicomFile::GetRawFrame(std::string& target,
6c73df12ca51 New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1913
diff changeset
1342 std::string& mime,
6c73df12ca51 New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1913
diff changeset
1343 unsigned int frameId)
6c73df12ca51 New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1913
diff changeset
1344 {
6c73df12ca51 New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1913
diff changeset
1345 if (pimpl_->frameIndex_.get() == NULL)
6c73df12ca51 New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1913
diff changeset
1346 {
1956
fc16ee04e71b refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1950
diff changeset
1347 pimpl_->frameIndex_.reset(new DicomFrameIndex(*pimpl_->file_));
1924
6c73df12ca51 New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1913
diff changeset
1348 }
6c73df12ca51 New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1913
diff changeset
1349
6c73df12ca51 New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1913
diff changeset
1350 pimpl_->frameIndex_->GetRawFrame(target, frameId);
6c73df12ca51 New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1913
diff changeset
1351
6c73df12ca51 New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1913
diff changeset
1352 E_TransferSyntax transferSyntax = pimpl_->file_->getDataset()->getOriginalXfer();
6c73df12ca51 New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1913
diff changeset
1353 switch (transferSyntax)
6c73df12ca51 New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1913
diff changeset
1354 {
1946
40b7a0176305 fix compilation against DCMTK 3.6.1
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1945
diff changeset
1355 case EXS_JPEGProcess1:
1924
6c73df12ca51 New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1913
diff changeset
1356 mime = "image/jpeg";
6c73df12ca51 New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1913
diff changeset
1357 break;
6c73df12ca51 New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1913
diff changeset
1358
6c73df12ca51 New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1913
diff changeset
1359 case EXS_JPEG2000LosslessOnly:
6c73df12ca51 New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1913
diff changeset
1360 case EXS_JPEG2000:
6c73df12ca51 New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1913
diff changeset
1361 mime = "image/jp2";
2016
0ae26237569a cppcheck
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1982
diff changeset
1362 break;
1924
6c73df12ca51 New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1913
diff changeset
1363
6c73df12ca51 New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1913
diff changeset
1364 default:
6c73df12ca51 New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1913
diff changeset
1365 mime = "application/octet-stream";
6c73df12ca51 New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1913
diff changeset
1366 break;
6c73df12ca51 New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1913
diff changeset
1367 }
6c73df12ca51 New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1913
diff changeset
1368 }
6c73df12ca51 New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1913
diff changeset
1369
6c73df12ca51 New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1913
diff changeset
1370
6c73df12ca51 New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1913
diff changeset
1371 void ParsedDicomFile::InvalidateCache()
6c73df12ca51 New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1913
diff changeset
1372 {
6c73df12ca51 New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1913
diff changeset
1373 pimpl_->frameIndex_.reset(NULL);
6c73df12ca51 New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1913
diff changeset
1374 }
1950
533ff46e944b return a single raw frame from DICOM videos
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1946
diff changeset
1375
533ff46e944b return a single raw frame from DICOM videos
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1946
diff changeset
1376
533ff46e944b return a single raw frame from DICOM videos
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1946
diff changeset
1377 unsigned int ParsedDicomFile::GetFramesCount() const
533ff46e944b return a single raw frame from DICOM videos
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1946
diff changeset
1378 {
1956
fc16ee04e71b refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1950
diff changeset
1379 return DicomFrameIndex::GetFramesCount(*pimpl_->file_);
1950
533ff46e944b return a single raw frame from DICOM videos
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1946
diff changeset
1380 }
2207
6dc3bdb4088b Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2202
diff changeset
1381
6dc3bdb4088b Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2202
diff changeset
1382
6dc3bdb4088b Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2202
diff changeset
1383 void ParsedDicomFile::ChangeEncoding(Encoding target)
6dc3bdb4088b Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2202
diff changeset
1384 {
6dc3bdb4088b Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2202
diff changeset
1385 Encoding source = GetEncoding();
6dc3bdb4088b Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2202
diff changeset
1386
6dc3bdb4088b Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2202
diff changeset
1387 if (source != target) // Avoid unnecessary conversion
6dc3bdb4088b Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2202
diff changeset
1388 {
6dc3bdb4088b Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2202
diff changeset
1389 ReplacePlainString(DICOM_TAG_SPECIFIC_CHARACTER_SET, GetDicomSpecificCharacterSet(target));
6dc3bdb4088b Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2202
diff changeset
1390 FromDcmtkBridge::ChangeStringEncoding(*pimpl_->file_->getDataset(), source, target);
6dc3bdb4088b Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2202
diff changeset
1391 }
6dc3bdb4088b Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2202
diff changeset
1392 }
2209
e3fd5bc429a2 URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2207
diff changeset
1393
e3fd5bc429a2 URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2207
diff changeset
1394
e3fd5bc429a2 URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2207
diff changeset
1395 void ParsedDicomFile::ExtractDicomSummary(DicomMap& target) const
e3fd5bc429a2 URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2207
diff changeset
1396 {
e3fd5bc429a2 URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2207
diff changeset
1397 Configuration::ExtractDicomSummary(target, *pimpl_->file_->getDataset());
e3fd5bc429a2 URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2207
diff changeset
1398 }
e3fd5bc429a2 URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2207
diff changeset
1399
e3fd5bc429a2 URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2207
diff changeset
1400
e3fd5bc429a2 URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2207
diff changeset
1401 void ParsedDicomFile::ExtractDicomAsJson(Json::Value& target) const
e3fd5bc429a2 URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2207
diff changeset
1402 {
e3fd5bc429a2 URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2207
diff changeset
1403 Configuration::ExtractDicomAsJson(target, *pimpl_->file_->getDataset());
e3fd5bc429a2 URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2207
diff changeset
1404 }
e3fd5bc429a2 URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2207
diff changeset
1405
e3fd5bc429a2 URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2207
diff changeset
1406
e3fd5bc429a2 URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2207
diff changeset
1407 bool ParsedDicomFile::LookupTransferSyntax(std::string& result)
e3fd5bc429a2 URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2207
diff changeset
1408 {
e3fd5bc429a2 URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2207
diff changeset
1409 return FromDcmtkBridge::LookupTransferSyntax(result, *pimpl_->file_);
e3fd5bc429a2 URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2207
diff changeset
1410 }
790
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1411 }