Mercurial > hg > orthanc
annotate OrthancServer/ServerIndex.cpp @ 2896:3fabf9a673f6 db-changes
integration mainline->db-changes
author | Sebastien Jodogne <s.jodogne@gmail.com> |
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date | Thu, 18 Oct 2018 10:48:11 +0200 |
parents | c277e0421200 |
children | e5e3253a1164 |
rev | line source |
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0 | 1 /** |
62 | 2 * Orthanc - A Lightweight, RESTful DICOM Store |
1900 | 3 * Copyright (C) 2012-2016 Sebastien Jodogne, Medical Physics |
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4 * Department, University Hospital of Liege, Belgium |
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5 * Copyright (C) 2017-2018 Osimis S.A., Belgium |
0 | 6 * |
7 * This program is free software: you can redistribute it and/or | |
8 * modify it under the terms of the GNU General Public License as | |
9 * published by the Free Software Foundation, either version 3 of the | |
10 * License, or (at your option) any later version. | |
136 | 11 * |
12 * In addition, as a special exception, the copyright holders of this | |
13 * program give permission to link the code of its release with the | |
14 * OpenSSL project's "OpenSSL" library (or with modified versions of it | |
15 * that use the same license as the "OpenSSL" library), and distribute | |
16 * the linked executables. You must obey the GNU General Public License | |
17 * in all respects for all of the code used other than "OpenSSL". If you | |
18 * modify file(s) with this exception, you may extend this exception to | |
19 * your version of the file(s), but you are not obligated to do so. If | |
20 * you do not wish to do so, delete this exception statement from your | |
21 * version. If you delete this exception statement from all source files | |
22 * in the program, then also delete it here. | |
0 | 23 * |
24 * This program is distributed in the hope that it will be useful, but | |
25 * WITHOUT ANY WARRANTY; without even the implied warranty of | |
26 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU | |
27 * General Public License for more details. | |
28 * | |
29 * You should have received a copy of the GNU General Public License | |
30 * along with this program. If not, see <http://www.gnu.org/licenses/>. | |
31 **/ | |
32 | |
33 | |
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34 #include "PrecompiledHeadersServer.h" |
0 | 35 #include "ServerIndex.h" |
36 | |
6 | 37 #ifndef NOMINMAX |
2 | 38 #define NOMINMAX |
6 | 39 #endif |
40 | |
1198 | 41 #include "ServerIndexChange.h" |
8 | 42 #include "EmbeddedResources.h" |
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43 #include "OrthancInitialization.h" |
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44 #include "../Core/DicomParsing/ParsedDicomFile.h" |
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45 #include "ServerToolbox.h" |
0 | 46 #include "../Core/Toolbox.h" |
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47 #include "../Core/Logging.h" |
0 | 48 #include "../Core/DicomFormat/DicomArray.h" |
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49 |
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50 #include "../Core/DicomParsing/FromDcmtkBridge.h" |
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51 #include "ServerContext.h" |
1822 | 52 #include "DicomInstanceToStore.h" |
2122 | 53 #include "Search/LookupResource.h" |
0 | 54 |
55 #include <boost/lexical_cast.hpp> | |
56 #include <stdio.h> | |
57 | |
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58 static const uint64_t MEGA_BYTES = 1024 * 1024; |
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59 |
62 | 60 namespace Orthanc |
0 | 61 { |
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62 class ServerIndex::Listener : public IDatabaseListener |
0 | 63 { |
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64 private: |
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65 struct FileToRemove |
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66 { |
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67 private: |
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68 std::string uuid_; |
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69 FileContentType type_; |
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70 |
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71 public: |
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72 FileToRemove(const FileInfo& info) : uuid_(info.GetUuid()), |
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73 type_(info.GetContentType()) |
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74 { |
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75 } |
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76 |
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77 const std::string& GetUuid() const |
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78 { |
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79 return uuid_; |
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80 } |
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81 |
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82 FileContentType GetContentType() const |
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83 { |
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84 return type_; |
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85 } |
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86 }; |
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87 |
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88 ServerContext& context_; |
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89 bool hasRemainingLevel_; |
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90 ResourceType remainingType_; |
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91 std::string remainingPublicId_; |
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92 std::list<FileToRemove> pendingFilesToRemove_; |
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93 std::list<ServerIndexChange> pendingChanges_; |
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94 uint64_t sizeOfFilesToRemove_; |
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95 bool insideTransaction_; |
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96 |
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97 void Reset() |
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98 { |
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99 sizeOfFilesToRemove_ = 0; |
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100 hasRemainingLevel_ = false; |
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101 pendingFilesToRemove_.clear(); |
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102 pendingChanges_.clear(); |
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103 } |
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104 |
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105 public: |
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106 Listener(ServerContext& context) : context_(context), |
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107 insideTransaction_(false) |
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108 { |
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109 Reset(); |
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110 assert(ResourceType_Patient < ResourceType_Study && |
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111 ResourceType_Study < ResourceType_Series && |
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112 ResourceType_Series < ResourceType_Instance); |
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113 } |
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114 |
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115 void StartTransaction() |
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116 { |
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117 Reset(); |
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118 insideTransaction_ = true; |
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119 } |
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120 |
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121 void EndTransaction() |
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122 { |
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123 insideTransaction_ = false; |
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124 } |
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125 |
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126 uint64_t GetSizeOfFilesToRemove() |
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127 { |
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128 return sizeOfFilesToRemove_; |
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129 } |
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130 |
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131 void CommitFilesToRemove() |
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132 { |
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133 for (std::list<FileToRemove>::const_iterator |
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134 it = pendingFilesToRemove_.begin(); |
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135 it != pendingFilesToRemove_.end(); ++it) |
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136 { |
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137 context_.RemoveFile(it->GetUuid(), it->GetContentType()); |
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138 } |
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139 } |
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140 |
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141 void CommitChanges() |
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142 { |
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143 for (std::list<ServerIndexChange>::const_iterator |
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144 it = pendingChanges_.begin(); |
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145 it != pendingChanges_.end(); ++it) |
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146 { |
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147 context_.SignalChange(*it); |
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148 } |
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149 } |
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150 |
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151 virtual void SignalRemainingAncestor(ResourceType parentType, |
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152 const std::string& publicId) |
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153 { |
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154 VLOG(1) << "Remaining ancestor \"" << publicId << "\" (" << parentType << ")"; |
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155 |
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156 if (hasRemainingLevel_) |
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157 { |
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158 if (parentType < remainingType_) |
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159 { |
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160 remainingType_ = parentType; |
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161 remainingPublicId_ = publicId; |
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162 } |
1158 | 163 } |
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164 else |
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165 { |
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166 hasRemainingLevel_ = true; |
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167 remainingType_ = parentType; |
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168 remainingPublicId_ = publicId; |
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169 } |
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170 } |
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171 |
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172 virtual void SignalFileDeleted(const FileInfo& info) |
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173 { |
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174 assert(Toolbox::IsUuid(info.GetUuid())); |
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175 pendingFilesToRemove_.push_back(FileToRemove(info)); |
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176 sizeOfFilesToRemove_ += info.GetCompressedSize(); |
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177 } |
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178 |
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179 virtual void SignalChange(const ServerIndexChange& change) |
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180 { |
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181 VLOG(1) << "Change related to resource " << change.GetPublicId() << " of type " |
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182 << EnumerationToString(change.GetResourceType()) << ": " |
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183 << EnumerationToString(change.GetChangeType()); |
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184 |
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185 if (insideTransaction_) |
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186 { |
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187 pendingChanges_.push_back(change); |
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188 } |
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189 else |
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190 { |
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191 context_.SignalChange(change); |
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192 } |
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193 } |
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194 |
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195 bool HasRemainingLevel() const |
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196 { |
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197 return hasRemainingLevel_; |
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198 } |
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199 |
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200 ResourceType GetRemainingType() const |
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201 { |
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202 assert(HasRemainingLevel()); |
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203 return remainingType_; |
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204 } |
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205 |
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206 const std::string& GetRemainingPublicId() const |
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207 { |
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208 assert(HasRemainingLevel()); |
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209 return remainingPublicId_; |
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210 } |
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211 }; |
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213 | |
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214 class ServerIndex::Transaction |
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215 { |
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216 private: |
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217 ServerIndex& index_; |
1235 | 218 std::auto_ptr<SQLite::ITransaction> transaction_; |
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219 bool isCommitted_; |
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220 |
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221 public: |
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222 Transaction(ServerIndex& index) : |
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223 index_(index), |
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224 isCommitted_(false) |
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225 { |
1247 | 226 transaction_.reset(index_.db_.StartTransaction()); |
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227 transaction_->Begin(); |
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228 |
1270 | 229 assert(index_.currentStorageSize_ == index_.db_.GetTotalCompressedSize()); |
230 | |
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231 index_.listener_->StartTransaction(); |
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232 } |
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233 |
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234 ~Transaction() |
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235 { |
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236 index_.listener_->EndTransaction(); |
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237 |
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238 if (!isCommitted_) |
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239 { |
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240 transaction_->Rollback(); |
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241 } |
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242 } |
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243 |
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244 void Commit(uint64_t sizeOfAddedFiles) |
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245 { |
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246 if (!isCommitted_) |
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247 { |
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248 transaction_->Commit(); |
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249 |
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250 // We can remove the files once the SQLite transaction has |
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251 // been successfully committed. Some files might have to be |
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252 // deleted because of recycling. |
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253 index_.listener_->CommitFilesToRemove(); |
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254 |
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255 index_.currentStorageSize_ += sizeOfAddedFiles; |
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256 |
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257 assert(index_.currentStorageSize_ >= index_.listener_->GetSizeOfFilesToRemove()); |
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258 index_.currentStorageSize_ -= index_.listener_->GetSizeOfFilesToRemove(); |
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259 |
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260 // Send all the pending changes to the Orthanc plugins |
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261 index_.listener_->CommitChanges(); |
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262 |
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263 isCommitted_ = true; |
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264 } |
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265 } |
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266 }; |
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267 |
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268 |
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269 class ServerIndex::UnstableResourcePayload |
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270 { |
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271 private: |
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272 ResourceType type_; |
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273 std::string publicId_; |
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274 boost::posix_time::ptime time_; |
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275 |
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276 public: |
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277 UnstableResourcePayload() : type_(ResourceType_Instance) |
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278 { |
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279 } |
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280 |
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281 UnstableResourcePayload(Orthanc::ResourceType type, |
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282 const std::string& publicId) : |
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283 type_(type), |
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284 publicId_(publicId) |
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285 { |
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286 time_ = boost::posix_time::second_clock::local_time(); |
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287 } |
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288 |
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289 unsigned int GetAge() const |
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290 { |
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291 return (boost::posix_time::second_clock::local_time() - time_).total_seconds(); |
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292 } |
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293 |
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294 ResourceType GetResourceType() const |
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295 { |
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296 return type_; |
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297 } |
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298 |
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299 const std::string& GetPublicId() const |
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300 { |
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301 return publicId_; |
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302 } |
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303 }; |
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304 |
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305 |
212 | 306 bool ServerIndex::DeleteResource(Json::Value& target, |
0 | 307 const std::string& uuid, |
202 | 308 ResourceType expectedType) |
0 | 309 { |
206
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310 boost::mutex::scoped_lock lock(mutex_); |
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311 |
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312 Transaction t(*this); |
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313 |
202 | 314 int64_t id; |
315 ResourceType type; | |
1294 | 316 if (!db_.LookupResource(id, type, uuid) || |
202 | 317 expectedType != type) |
0 | 318 { |
319 return false; | |
320 } | |
202 | 321 |
1247 | 322 db_.DeleteResource(id); |
0 | 323 |
202 | 324 if (listener_->HasRemainingLevel()) |
0 | 325 { |
202 | 326 ResourceType type = listener_->GetRemainingType(); |
327 const std::string& uuid = listener_->GetRemainingPublicId(); | |
0 | 328 |
329 target["RemainingAncestor"] = Json::Value(Json::objectValue); | |
204 | 330 target["RemainingAncestor"]["Path"] = GetBasePath(type, uuid); |
434
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331 target["RemainingAncestor"]["Type"] = EnumerationToString(type); |
0 | 332 target["RemainingAncestor"]["ID"] = uuid; |
333 } | |
334 else | |
335 { | |
336 target["RemainingAncestor"] = Json::nullValue; | |
337 } | |
338 | |
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339 t.Commit(0); |
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340 |
0 | 341 return true; |
342 } | |
343 | |
344 | |
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345 void ServerIndex::FlushThread(ServerIndex* that, |
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346 unsigned int threadSleep) |
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347 { |
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348 // By default, wait for 10 seconds before flushing |
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349 unsigned int sleep = 10; |
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350 |
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351 try |
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352 { |
744 | 353 boost::mutex::scoped_lock lock(that->mutex_); |
1239 | 354 std::string sleepString; |
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355 |
1247 | 356 if (that->db_.LookupGlobalProperty(sleepString, GlobalProperty_FlushSleep) && |
1239 | 357 Toolbox::IsInteger(sleepString)) |
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358 { |
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359 sleep = boost::lexical_cast<unsigned int>(sleepString); |
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360 } |
511
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361 } |
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362 catch (boost::bad_lexical_cast&) |
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363 { |
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364 } |
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365 |
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366 LOG(INFO) << "Starting the database flushing thread (sleep = " << sleep << ")"; |
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367 |
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368 unsigned int count = 0; |
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369 |
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370 while (!that->done_) |
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371 { |
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372 boost::this_thread::sleep(boost::posix_time::milliseconds(threadSleep)); |
511
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373 count++; |
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374 if (count < sleep) |
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375 { |
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376 continue; |
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377 } |
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378 |
2217 | 379 Logging::Flush(); |
380 | |
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381 boost::mutex::scoped_lock lock(that->mutex_); |
1247 | 382 that->db_.FlushToDisk(); |
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383 count = 0; |
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384 } |
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385 |
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386 LOG(INFO) << "Stopping the database flushing thread"; |
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387 } |
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388 |
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389 |
1247 | 390 static void ComputeExpectedNumberOfInstances(IDatabaseWrapper& db, |
433 | 391 int64_t series, |
392 const DicomMap& dicomSummary) | |
393 { | |
394 try | |
395 { | |
656 | 396 const DicomValue* value; |
397 const DicomValue* value2; | |
398 | |
433 | 399 if ((value = dicomSummary.TestAndGetValue(DICOM_TAG_IMAGES_IN_ACQUISITION)) != NULL && |
400 (value2 = dicomSummary.TestAndGetValue(DICOM_TAG_NUMBER_OF_TEMPORAL_POSITIONS)) != NULL) | |
401 { | |
402 // Patch for series with temporal positions thanks to Will Ryder | |
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403 int64_t imagesInAcquisition = boost::lexical_cast<int64_t>(value->GetContent()); |
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404 int64_t countTemporalPositions = boost::lexical_cast<int64_t>(value2->GetContent()); |
433 | 405 std::string expected = boost::lexical_cast<std::string>(imagesInAcquisition * countTemporalPositions); |
406 db.SetMetadata(series, MetadataType_Series_ExpectedNumberOfInstances, expected); | |
407 } | |
408 | |
409 else if ((value = dicomSummary.TestAndGetValue(DICOM_TAG_NUMBER_OF_SLICES)) != NULL && | |
410 (value2 = dicomSummary.TestAndGetValue(DICOM_TAG_NUMBER_OF_TIME_SLICES)) != NULL) | |
411 { | |
412 // Support of Cardio-PET images | |
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413 int64_t numberOfSlices = boost::lexical_cast<int64_t>(value->GetContent()); |
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414 int64_t numberOfTimeSlices = boost::lexical_cast<int64_t>(value2->GetContent()); |
433 | 415 std::string expected = boost::lexical_cast<std::string>(numberOfSlices * numberOfTimeSlices); |
416 db.SetMetadata(series, MetadataType_Series_ExpectedNumberOfInstances, expected); | |
417 } | |
418 | |
419 else if ((value = dicomSummary.TestAndGetValue(DICOM_TAG_CARDIAC_NUMBER_OF_IMAGES)) != NULL) | |
420 { | |
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421 db.SetMetadata(series, MetadataType_Series_ExpectedNumberOfInstances, value->GetContent()); |
433 | 422 } |
423 } | |
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424 catch (OrthancException&) |
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425 { |
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426 } |
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427 catch (boost::bad_lexical_cast&) |
433 | 428 { |
429 } | |
430 } | |
431 | |
432 | |
1237 | 433 |
434 | |
1238 | 435 bool ServerIndex::GetMetadataAsInteger(int64_t& result, |
1237 | 436 int64_t id, |
437 MetadataType type) | |
438 { | |
1238 | 439 std::string s; |
1247 | 440 if (!db_.LookupMetadata(s, id, type)) |
1237 | 441 { |
442 return false; | |
443 } | |
444 | |
445 try | |
446 { | |
1238 | 447 result = boost::lexical_cast<int64_t>(s); |
1237 | 448 return true; |
449 } | |
450 catch (boost::bad_lexical_cast&) | |
451 { | |
452 return false; | |
453 } | |
454 } | |
455 | |
456 | |
1297 | 457 void ServerIndex::LogChange(int64_t internalId, |
458 ChangeType changeType, | |
459 ResourceType resourceType, | |
460 const std::string& publicId) | |
461 { | |
462 ServerIndexChange change(changeType, resourceType, publicId); | |
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463 |
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464 if (changeType <= ChangeType_INTERNAL_LastLogged) |
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465 { |
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466 db_.LogChange(internalId, change); |
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467 } |
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468 |
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469 assert(listener_.get() != NULL); |
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470 listener_->SignalChange(change); |
1297 | 471 } |
472 | |
1237 | 473 |
474 uint64_t ServerIndex::IncrementGlobalSequenceInternal(GlobalProperty property) | |
475 { | |
476 std::string oldValue; | |
477 | |
1247 | 478 if (db_.LookupGlobalProperty(oldValue, property)) |
1237 | 479 { |
480 uint64_t oldNumber; | |
481 | |
482 try | |
483 { | |
484 oldNumber = boost::lexical_cast<uint64_t>(oldValue); | |
1247 | 485 db_.SetGlobalProperty(property, boost::lexical_cast<std::string>(oldNumber + 1)); |
1237 | 486 return oldNumber + 1; |
487 } | |
488 catch (boost::bad_lexical_cast&) | |
489 { | |
490 throw OrthancException(ErrorCode_InternalError); | |
491 } | |
492 } | |
493 else | |
494 { | |
495 // Initialize the sequence at "1" | |
1247 | 496 db_.SetGlobalProperty(property, "1"); |
1237 | 497 return 1; |
498 } | |
499 } | |
500 | |
501 | |
502 | |
1299 | 503 int64_t ServerIndex::CreateResource(const std::string& publicId, |
504 ResourceType type) | |
505 { | |
506 int64_t id = db_.CreateResource(publicId, type); | |
507 | |
508 ChangeType changeType; | |
509 switch (type) | |
510 { | |
511 case ResourceType_Patient: | |
512 changeType = ChangeType_NewPatient; | |
513 break; | |
514 | |
515 case ResourceType_Study: | |
516 changeType = ChangeType_NewStudy; | |
517 break; | |
518 | |
519 case ResourceType_Series: | |
520 changeType = ChangeType_NewSeries; | |
521 break; | |
522 | |
523 case ResourceType_Instance: | |
524 changeType = ChangeType_NewInstance; | |
525 break; | |
526 | |
527 default: | |
528 throw OrthancException(ErrorCode_InternalError); | |
529 } | |
530 | |
531 ServerIndexChange change(changeType, type, publicId); | |
532 db_.LogChange(id, change); | |
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533 |
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534 assert(listener_.get() != NULL); |
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535 listener_->SignalChange(change); |
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536 |
1299 | 537 return id; |
538 } | |
539 | |
1286 | 540 |
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541 ServerIndex::ServerIndex(ServerContext& context, |
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542 IDatabaseWrapper& db, |
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543 unsigned int threadSleep) : |
511
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544 done_(false), |
1247 | 545 db_(db), |
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546 maximumStorageSize_(0), |
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547 maximumPatients_(0), |
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548 overwrite_(false) |
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549 { |
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550 listener_.reset(new Listener(context)); |
1247 | 551 db_.SetListener(*listener_); |
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552 |
1247 | 553 currentStorageSize_ = db_.GetTotalCompressedSize(); |
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554 |
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555 // Initial recycling if the parameters have changed since the last |
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556 // execution of Orthanc |
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557 StandaloneRecycling(); |
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558 |
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559 if (db.HasFlushToDisk()) |
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560 { |
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561 flushThread_ = boost::thread(FlushThread, this, threadSleep); |
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562 } |
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563 |
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564 unstableResourcesMonitorThread_ = boost::thread |
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565 (UnstableResourcesMonitorThread, this, threadSleep); |
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566 } |
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567 |
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568 |
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569 |
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570 ServerIndex::~ServerIndex() |
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571 { |
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572 if (!done_) |
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573 { |
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574 LOG(ERROR) << "INTERNAL ERROR: ServerIndex::Stop() should be invoked manually to avoid mess in the destruction order!"; |
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575 Stop(); |
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576 } |
0 | 577 } |
578 | |
579 | |
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580 |
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581 void ServerIndex::Stop() |
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582 { |
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583 if (!done_) |
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584 { |
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585 done_ = true; |
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586 |
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587 if (db_.HasFlushToDisk() && |
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588 flushThread_.joinable()) |
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589 { |
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590 flushThread_.join(); |
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591 } |
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592 |
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593 if (unstableResourcesMonitorThread_.joinable()) |
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594 { |
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595 unstableResourcesMonitorThread_.join(); |
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596 } |
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597 } |
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598 } |
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599 |
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600 |
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601 |
2188 | 602 void ServerIndex::SetInstanceMetadata(std::map<MetadataType, std::string>& instanceMetadata, |
603 int64_t instance, | |
604 MetadataType metadata, | |
605 const std::string& value) | |
606 { | |
607 db_.SetMetadata(instance, metadata, value); | |
608 instanceMetadata[metadata] = value; | |
609 } | |
610 | |
611 | |
612 | |
1006
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613 StoreStatus ServerIndex::Store(std::map<MetadataType, std::string>& instanceMetadata, |
1822 | 614 DicomInstanceToStore& instanceToStore, |
615 const Attachments& attachments) | |
0 | 616 { |
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617 boost::mutex::scoped_lock lock(mutex_); |
0 | 618 |
1822 | 619 const DicomMap& dicomSummary = instanceToStore.GetSummary(); |
620 const ServerIndex::MetadataMap& metadata = instanceToStore.GetMetadata(); | |
621 | |
1006
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622 instanceMetadata.clear(); |
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623 |
1822 | 624 DicomInstanceHasher hasher(instanceToStore.GetSummary()); |
0 | 625 |
626 try | |
627 { | |
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628 Transaction t(*this); |
0 | 629 |
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630 // Check whether this instance is already stored |
0 | 631 { |
432 | 632 ResourceType type; |
633 int64_t tmp; | |
1294 | 634 if (db_.LookupResource(tmp, type, hasher.HashInstance())) |
432 | 635 { |
636 assert(type == ResourceType_Instance); | |
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637 |
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638 if (overwrite_) |
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639 { |
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640 // Overwrite the old instance |
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641 LOG(INFO) << "Overwriting instance: " << hasher.HashInstance(); |
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642 db_.DeleteResource(tmp); |
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643 } |
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644 else |
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645 { |
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646 // Do nothing if the instance already exists |
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647 db_.GetAllMetadata(instanceMetadata, tmp); |
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648 return StoreStatus_AlreadyStored; |
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649 } |
432 | 650 } |
0 | 651 } |
652 | |
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653 // Ensure there is enough room in the storage for the new instance |
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654 uint64_t instanceSize = 0; |
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655 for (Attachments::const_iterator it = attachments.begin(); |
656 | 656 it != attachments.end(); ++it) |
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657 { |
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658 instanceSize += it->GetCompressedSize(); |
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659 } |
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660 |
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661 Recycle(instanceSize, hasher.HashPatient()); |
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662 |
202 | 663 // Create the instance |
1299 | 664 int64_t instance = CreateResource(hasher.HashInstance(), ResourceType_Instance); |
2120 | 665 ServerToolbox::StoreMainDicomTags(db_, instance, ResourceType_Instance, dicomSummary); |
202 | 666 |
432 | 667 // Detect up to which level the patient/study/series/instance |
668 // hierarchy must be created | |
669 int64_t patient = -1, study = -1, series = -1; | |
670 bool isNewPatient = false; | |
671 bool isNewStudy = false; | |
672 bool isNewSeries = false; | |
673 | |
0 | 674 { |
432 | 675 ResourceType dummy; |
676 | |
1294 | 677 if (db_.LookupResource(series, dummy, hasher.HashSeries())) |
432 | 678 { |
679 assert(dummy == ResourceType_Series); | |
680 // The patient, the study and the series already exist | |
681 | |
1294 | 682 bool ok = (db_.LookupResource(patient, dummy, hasher.HashPatient()) && |
683 db_.LookupResource(study, dummy, hasher.HashStudy())); | |
432 | 684 assert(ok); |
685 } | |
1294 | 686 else if (db_.LookupResource(study, dummy, hasher.HashStudy())) |
432 | 687 { |
688 assert(dummy == ResourceType_Study); | |
689 | |
690 // New series: The patient and the study already exist | |
691 isNewSeries = true; | |
692 | |
1294 | 693 bool ok = db_.LookupResource(patient, dummy, hasher.HashPatient()); |
432 | 694 assert(ok); |
695 } | |
1294 | 696 else if (db_.LookupResource(patient, dummy, hasher.HashPatient())) |
432 | 697 { |
698 assert(dummy == ResourceType_Patient); | |
699 | |
700 // New study and series: The patient already exist | |
701 isNewStudy = true; | |
702 isNewSeries = true; | |
703 } | |
704 else | |
705 { | |
706 // New patient, study and series: Nothing exists | |
707 isNewPatient = true; | |
708 isNewStudy = true; | |
709 isNewSeries = true; | |
710 } | |
711 } | |
712 | |
713 // Create the series if needed | |
714 if (isNewSeries) | |
715 { | |
1299 | 716 series = CreateResource(hasher.HashSeries(), ResourceType_Series); |
2120 | 717 ServerToolbox::StoreMainDicomTags(db_, series, ResourceType_Series, dicomSummary); |
432 | 718 } |
202 | 719 |
432 | 720 // Create the study if needed |
721 if (isNewStudy) | |
722 { | |
1299 | 723 study = CreateResource(hasher.HashStudy(), ResourceType_Study); |
2120 | 724 ServerToolbox::StoreMainDicomTags(db_, study, ResourceType_Study, dicomSummary); |
432 | 725 } |
726 | |
727 // Create the patient if needed | |
728 if (isNewPatient) | |
729 { | |
1299 | 730 patient = CreateResource(hasher.HashPatient(), ResourceType_Patient); |
2120 | 731 ServerToolbox::StoreMainDicomTags(db_, patient, ResourceType_Patient, dicomSummary); |
432 | 732 } |
202 | 733 |
432 | 734 // Create the parent-to-child links |
1247 | 735 db_.AttachChild(series, instance); |
432 | 736 |
737 if (isNewSeries) | |
738 { | |
1247 | 739 db_.AttachChild(study, series); |
0 | 740 } |
432 | 741 |
742 if (isNewStudy) | |
0 | 743 { |
1247 | 744 db_.AttachChild(patient, study); |
0 | 745 } |
746 | |
432 | 747 // Sanity checks |
748 assert(patient != -1); | |
749 assert(study != -1); | |
750 assert(series != -1); | |
751 assert(instance != -1); | |
752 | |
202 | 753 // Attach the files to the newly created instance |
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754 for (Attachments::const_iterator it = attachments.begin(); |
656 | 755 it != attachments.end(); ++it) |
232
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756 { |
1247 | 757 db_.AddAttachment(instance, *it); |
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758 } |
202 | 759 |
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760 // Attach the user-specified metadata |
1006
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proper handling of metadata in Store
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diff
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|
761 for (MetadataMap::const_iterator |
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diff
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762 it = metadata.begin(); it != metadata.end(); ++it) |
1002
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anonymization refactoring
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parents:
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diff
changeset
|
763 { |
1006
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proper handling of metadata in Store
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diff
changeset
|
764 switch (it->first.first) |
1002
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anonymization refactoring
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diff
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|
765 { |
1006
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proper handling of metadata in Store
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parents:
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diff
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|
766 case ResourceType_Patient: |
1247 | 767 db_.SetMetadata(patient, it->first.second, it->second); |
1006
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proper handling of metadata in Store
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parents:
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diff
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|
768 break; |
1002
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|
769 |
1006
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proper handling of metadata in Store
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
770 case ResourceType_Study: |
1247 | 771 db_.SetMetadata(study, it->first.second, it->second); |
1006
649d47854314
proper handling of metadata in Store
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parents:
1004
diff
changeset
|
772 break; |
1002
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anonymization refactoring
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diff
changeset
|
773 |
1006
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proper handling of metadata in Store
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parents:
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diff
changeset
|
774 case ResourceType_Series: |
1247 | 775 db_.SetMetadata(series, it->first.second, it->second); |
1006
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proper handling of metadata in Store
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diff
changeset
|
776 break; |
1002
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diff
changeset
|
777 |
1006
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proper handling of metadata in Store
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changeset
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778 case ResourceType_Instance: |
2188 | 779 SetInstanceMetadata(instanceMetadata, instance, it->first.second, it->second); |
1006
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proper handling of metadata in Store
Sebastien Jodogne <s.jodogne@gmail.com>
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|
780 break; |
1002
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anonymization refactoring
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diff
changeset
|
781 |
1006
649d47854314
proper handling of metadata in Store
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diff
changeset
|
782 default: |
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proper handling of metadata in Store
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diff
changeset
|
783 throw OrthancException(ErrorCode_ParameterOutOfRange); |
1002
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diff
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|
784 } |
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|
785 } |
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diff
changeset
|
786 |
1004
a226e0959d8b
DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1002
diff
changeset
|
787 // Attach the auto-computed metadata for the patient/study/series levels |
2475
8cc3ca64a534
Orthanc now uses UTC (universal time) instead of local time in its database
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2447
diff
changeset
|
788 std::string now = SystemToolbox::GetNowIsoString(true /* use UTC time (not local time) */); |
1247 | 789 db_.SetMetadata(series, MetadataType_LastUpdate, now); |
790 db_.SetMetadata(study, MetadataType_LastUpdate, now); | |
791 db_.SetMetadata(patient, MetadataType_LastUpdate, now); | |
1004
a226e0959d8b
DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
792 |
a226e0959d8b
DicomInstanceToStore
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parents:
1002
diff
changeset
|
793 // Attach the auto-computed metadata for the instance level, |
a226e0959d8b
DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1002
diff
changeset
|
794 // reflecting these additions into the input metadata map |
2188 | 795 SetInstanceMetadata(instanceMetadata, instance, MetadataType_Instance_ReceptionDate, now); |
2640
c691fcf66071
ResourceModificationJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
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796 SetInstanceMetadata(instanceMetadata, instance, MetadataType_Instance_RemoteAet, |
2664
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serialization of DicomModalityStoreJob, OrthancPeerStoreJob and ResourceModificationJob
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parents:
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diff
changeset
|
797 instanceToStore.GetOrigin().GetRemoteAetC()); |
2189
c4b3259c8bce
New metadata automatically computed at the instance level: "TransferSyntax"
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diff
changeset
|
798 SetInstanceMetadata(instanceMetadata, instance, MetadataType_Instance_Origin, |
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parents:
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diff
changeset
|
799 EnumerationToString(instanceToStore.GetOrigin().GetRequestOrigin())); |
2726
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diff
changeset
|
800 |
1823
0ef4e6e66b56
"Origin" metadata for the instances
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diff
changeset
|
801 { |
2189
c4b3259c8bce
New metadata automatically computed at the instance level: "TransferSyntax"
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diff
changeset
|
802 std::string s; |
2726
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parents:
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diff
changeset
|
803 |
2189
c4b3259c8bce
New metadata automatically computed at the instance level: "TransferSyntax"
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
804 if (instanceToStore.LookupTransferSyntax(s)) |
c4b3259c8bce
New metadata automatically computed at the instance level: "TransferSyntax"
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parents:
2188
diff
changeset
|
805 { |
2726
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parents:
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diff
changeset
|
806 // New in Orthanc 1.2.0 |
2189
c4b3259c8bce
New metadata automatically computed at the instance level: "TransferSyntax"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
807 SetInstanceMetadata(instanceMetadata, instance, MetadataType_Instance_TransferSyntax, s); |
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parents:
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diff
changeset
|
808 } |
2726
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
809 |
46061a91c88a
new metadata (RemoteIP, CalledAET, HttpUsername), "?expand" metadata
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diff
changeset
|
810 if (instanceToStore.GetOrigin().LookupRemoteIp(s)) |
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parents:
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diff
changeset
|
811 { |
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diff
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|
812 // New in Orthanc 1.4.0 |
46061a91c88a
new metadata (RemoteIP, CalledAET, HttpUsername), "?expand" metadata
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parents:
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diff
changeset
|
813 SetInstanceMetadata(instanceMetadata, instance, MetadataType_Instance_RemoteIp, s); |
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new metadata (RemoteIP, CalledAET, HttpUsername), "?expand" metadata
Sebastien Jodogne <s.jodogne@gmail.com>
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|
814 } |
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new metadata (RemoteIP, CalledAET, HttpUsername), "?expand" metadata
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diff
changeset
|
815 |
46061a91c88a
new metadata (RemoteIP, CalledAET, HttpUsername), "?expand" metadata
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2717
diff
changeset
|
816 if (instanceToStore.GetOrigin().LookupCalledAet(s)) |
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new metadata (RemoteIP, CalledAET, HttpUsername), "?expand" metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
817 { |
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new metadata (RemoteIP, CalledAET, HttpUsername), "?expand" metadata
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diff
changeset
|
818 // New in Orthanc 1.4.0 |
46061a91c88a
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diff
changeset
|
819 SetInstanceMetadata(instanceMetadata, instance, MetadataType_Instance_CalledAet, s); |
46061a91c88a
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diff
changeset
|
820 } |
46061a91c88a
new metadata (RemoteIP, CalledAET, HttpUsername), "?expand" metadata
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parents:
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diff
changeset
|
821 |
46061a91c88a
new metadata (RemoteIP, CalledAET, HttpUsername), "?expand" metadata
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diff
changeset
|
822 if (instanceToStore.GetOrigin().LookupHttpUsername(s)) |
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new metadata (RemoteIP, CalledAET, HttpUsername), "?expand" metadata
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
823 { |
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new metadata (RemoteIP, CalledAET, HttpUsername), "?expand" metadata
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parents:
2717
diff
changeset
|
824 // New in Orthanc 1.4.0 |
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
825 SetInstanceMetadata(instanceMetadata, instance, MetadataType_Instance_HttpUsername, s); |
46061a91c88a
new metadata (RemoteIP, CalledAET, HttpUsername), "?expand" metadata
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parents:
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diff
changeset
|
826 } |
1823
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parents:
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diff
changeset
|
827 } |
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diff
changeset
|
828 |
202 | 829 const DicomValue* value; |
2208
90ea60bee5ff
New metadata automatically computed at the instance level: "SopClassUid"
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parents:
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diff
changeset
|
830 if ((value = dicomSummary.TestAndGetValue(DICOM_TAG_SOP_CLASS_UID)) != NULL && |
90ea60bee5ff
New metadata automatically computed at the instance level: "SopClassUid"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
831 !value->IsNull() && |
90ea60bee5ff
New metadata automatically computed at the instance level: "SopClassUid"
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parents:
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diff
changeset
|
832 !value->IsBinary()) |
90ea60bee5ff
New metadata automatically computed at the instance level: "SopClassUid"
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parents:
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diff
changeset
|
833 { |
90ea60bee5ff
New metadata automatically computed at the instance level: "SopClassUid"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2189
diff
changeset
|
834 SetInstanceMetadata(instanceMetadata, instance, MetadataType_Instance_SopClassUid, value->GetContent()); |
90ea60bee5ff
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diff
changeset
|
835 } |
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New metadata automatically computed at the instance level: "SopClassUid"
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diff
changeset
|
836 |
202 | 837 if ((value = dicomSummary.TestAndGetValue(DICOM_TAG_INSTANCE_NUMBER)) != NULL || |
838 (value = dicomSummary.TestAndGetValue(DICOM_TAG_IMAGE_INDEX)) != NULL) | |
0 | 839 { |
1737
ec66a16aa398
removal of DicomStringValue and DicomNullValue
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diff
changeset
|
840 if (!value->IsNull() && |
ec66a16aa398
removal of DicomStringValue and DicomNullValue
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diff
changeset
|
841 !value->IsBinary()) |
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removal of DicomStringValue and DicomNullValue
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parents:
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diff
changeset
|
842 { |
2188 | 843 SetInstanceMetadata(instanceMetadata, instance, MetadataType_Instance_IndexInSeries, value->GetContent()); |
1737
ec66a16aa398
removal of DicomStringValue and DicomNullValue
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diff
changeset
|
844 } |
0 | 845 } |
846 | |
1004
a226e0959d8b
DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1002
diff
changeset
|
847 // Check whether the series of this new instance is now completed |
202 | 848 if (isNewSeries) |
849 { | |
1247 | 850 ComputeExpectedNumberOfInstances(db_, series, dicomSummary); |
202 | 851 } |
852 | |
205
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logging of completed series
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diff
changeset
|
853 SeriesStatus seriesStatus = GetSeriesStatus(series); |
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logging of completed series
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diff
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854 if (seriesStatus == SeriesStatus_Complete) |
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logging of completed series
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diff
changeset
|
855 { |
1237 | 856 LogChange(series, ChangeType_CompletedSeries, ResourceType_Series, hasher.HashSeries()); |
205
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logging of completed series
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diff
changeset
|
857 } |
6ab754744446
logging of completed series
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parents:
204
diff
changeset
|
858 |
511
3b735fdf320b
monitoring of stable patients/studies/series
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parents:
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diff
changeset
|
859 // Mark the parent resources of this instance as unstable |
1177
5b2d8c280ac2
Plugins can monitor changes through callbacks
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parents:
1162
diff
changeset
|
860 MarkAsUnstable(series, ResourceType_Series, hasher.HashSeries()); |
5b2d8c280ac2
Plugins can monitor changes through callbacks
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diff
changeset
|
861 MarkAsUnstable(study, ResourceType_Study, hasher.HashStudy()); |
5b2d8c280ac2
Plugins can monitor changes through callbacks
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parents:
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diff
changeset
|
862 MarkAsUnstable(patient, ResourceType_Patient, hasher.HashPatient()); |
511
3b735fdf320b
monitoring of stable patients/studies/series
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diff
changeset
|
863 |
278
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parents:
273
diff
changeset
|
864 t.Commit(instanceSize); |
268
4bc02e2254ec
preparing ServerIndex for recycling
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264
diff
changeset
|
865 |
0 | 866 return StoreStatus_Success; |
867 } | |
62 | 868 catch (OrthancException& e) |
0 | 869 { |
1247 | 870 LOG(ERROR) << "EXCEPTION [" << e.What() << "]"; |
0 | 871 } |
872 | |
873 return StoreStatus_Failure; | |
874 } | |
875 | |
876 | |
238 | 877 void ServerIndex::ComputeStatistics(Json::Value& target) |
0 | 878 { |
206
4453a010d0db
flush to disk thread
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
205
diff
changeset
|
879 boost::mutex::scoped_lock lock(mutex_); |
238 | 880 target = Json::objectValue; |
0 | 881 |
278
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diff
changeset
|
882 uint64_t cs = currentStorageSize_; |
1247 | 883 assert(cs == db_.GetTotalCompressedSize()); |
884 uint64_t us = db_.GetTotalUncompressedSize(); | |
440
23e5b35e3c5c
statistics for patient/studies/series/instances
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parents:
438
diff
changeset
|
885 target["TotalDiskSize"] = boost::lexical_cast<std::string>(cs); |
238 | 886 target["TotalUncompressedSize"] = boost::lexical_cast<std::string>(us); |
1310
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custom database back-end
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1306
diff
changeset
|
887 target["TotalDiskSizeMB"] = static_cast<unsigned int>(cs / MEGA_BYTES); |
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diff
changeset
|
888 target["TotalUncompressedSizeMB"] = static_cast<unsigned int>(us / MEGA_BYTES); |
238 | 889 |
1247 | 890 target["CountPatients"] = static_cast<unsigned int>(db_.GetResourceCount(ResourceType_Patient)); |
891 target["CountStudies"] = static_cast<unsigned int>(db_.GetResourceCount(ResourceType_Study)); | |
892 target["CountSeries"] = static_cast<unsigned int>(db_.GetResourceCount(ResourceType_Series)); | |
893 target["CountInstances"] = static_cast<unsigned int>(db_.GetResourceCount(ResourceType_Instance)); | |
238 | 894 } |
895 | |
187
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diff
changeset
|
896 |
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refactoring of storing new instances
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changeset
|
897 |
585 | 898 SeriesStatus ServerIndex::GetSeriesStatus(int64_t id) |
199 | 899 { |
900 // Get the expected number of instances in this series (from the metadata) | |
1238 | 901 int64_t expected; |
902 if (!GetMetadataAsInteger(expected, id, MetadataType_Series_ExpectedNumberOfInstances)) | |
199 | 903 { |
904 return SeriesStatus_Unknown; | |
905 } | |
906 | |
907 // Loop over the instances of this series | |
908 std::list<int64_t> children; | |
1247 | 909 db_.GetChildrenInternalId(children, id); |
199 | 910 |
1238 | 911 std::set<int64_t> instances; |
199 | 912 for (std::list<int64_t>::const_iterator |
656 | 913 it = children.begin(); it != children.end(); ++it) |
199 | 914 { |
915 // Get the index of this instance in the series | |
1238 | 916 int64_t index; |
917 if (!GetMetadataAsInteger(index, *it, MetadataType_Instance_IndexInSeries)) | |
199 | 918 { |
919 return SeriesStatus_Unknown; | |
920 } | |
921 | |
656 | 922 if (!(index > 0 && index <= expected)) |
199 | 923 { |
924 // Out-of-range instance index | |
925 return SeriesStatus_Inconsistent; | |
926 } | |
927 | |
928 if (instances.find(index) != instances.end()) | |
929 { | |
930 // Twice the same instance index | |
931 return SeriesStatus_Inconsistent; | |
932 } | |
933 | |
934 instances.insert(index); | |
935 } | |
936 | |
1238 | 937 if (static_cast<int64_t>(instances.size()) == expected) |
199 | 938 { |
939 return SeriesStatus_Complete; | |
940 } | |
941 else | |
942 { | |
943 return SeriesStatus_Missing; | |
944 } | |
945 } | |
946 | |
947 | |
202 | 948 void ServerIndex::MainDicomTagsToJson(Json::Value& target, |
1668
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|
949 int64_t resourceId, |
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|
950 ResourceType resourceType) |
198
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951 { |
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952 DicomMap tags; |
1247 | 953 db_.GetMainDicomTags(tags, resourceId); |
1676
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diff
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|
954 |
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|
955 if (resourceType == ResourceType_Study) |
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|
956 { |
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diff
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|
957 DicomMap t1, t2; |
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|
958 tags.ExtractStudyInformation(t1); |
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|
959 tags.ExtractPatientInformation(t2); |
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|
960 |
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|
961 target["MainDicomTags"] = Json::objectValue; |
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|
962 FromDcmtkBridge::ToJson(target["MainDicomTags"], t1, true); |
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|
963 |
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|
964 target["PatientMainDicomTags"] = Json::objectValue; |
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|
965 FromDcmtkBridge::ToJson(target["PatientMainDicomTags"], t2, true); |
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|
966 } |
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|
967 else |
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|
968 { |
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|
969 target["MainDicomTags"] = Json::objectValue; |
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|
970 FromDcmtkBridge::ToJson(target["MainDicomTags"], tags, true); |
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|
971 } |
198
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972 } |
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973 |
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974 bool ServerIndex::LookupResource(Json::Value& result, |
199 | 975 const std::string& publicId, |
976 ResourceType expectedType) | |
198
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977 { |
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978 result = Json::objectValue; |
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979 |
206
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980 boost::mutex::scoped_lock lock(mutex_); |
199 | 981 |
198
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982 // Lookup for the requested resource |
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983 int64_t id; |
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984 ResourceType type; |
1294 | 985 if (!db_.LookupResource(id, type, publicId) || |
199 | 986 type != expectedType) |
198
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987 { |
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988 return false; |
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989 } |
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990 |
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991 // Find the parent resource (if it exists) |
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992 if (type != ResourceType_Patient) |
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993 { |
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994 int64_t parentId; |
1247 | 995 if (!db_.LookupParent(parentId, id)) |
198
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996 { |
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997 throw OrthancException(ErrorCode_InternalError); |
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998 } |
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999 |
1247 | 1000 std::string parent = db_.GetPublicId(parentId); |
198
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1001 |
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|
1002 switch (type) |
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1003 { |
269
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|
1004 case ResourceType_Study: |
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1005 result["ParentPatient"] = parent; |
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1006 break; |
198
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|
1007 |
269
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1008 case ResourceType_Series: |
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|
1009 result["ParentStudy"] = parent; |
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|
1010 break; |
198
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|
1011 |
269
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|
1012 case ResourceType_Instance: |
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1013 result["ParentSeries"] = parent; |
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|
1014 break; |
198
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1015 |
269
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|
1016 default: |
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|
1017 throw OrthancException(ErrorCode_InternalError); |
198
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1018 } |
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1019 } |
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1020 |
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1021 // List the children resources |
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|
1022 std::list<std::string> children; |
1247 | 1023 db_.GetChildrenPublicId(children, id); |
198
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|
1024 |
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1025 if (type != ResourceType_Instance) |
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1026 { |
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|
1027 Json::Value c = Json::arrayValue; |
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|
1028 |
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|
1029 for (std::list<std::string>::const_iterator |
656 | 1030 it = children.begin(); it != children.end(); ++it) |
198
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1031 { |
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|
1032 c.append(*it); |
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1033 } |
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1034 |
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|
1035 switch (type) |
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|
1036 { |
269
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|
1037 case ResourceType_Patient: |
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|
1038 result["Studies"] = c; |
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|
1039 break; |
198
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|
1040 |
269
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|
1041 case ResourceType_Study: |
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|
1042 result["Series"] = c; |
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1043 break; |
198
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|
1044 |
269
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|
1045 case ResourceType_Series: |
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|
1046 result["Instances"] = c; |
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1047 break; |
198
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1048 |
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|
1049 default: |
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1050 throw OrthancException(ErrorCode_InternalError); |
198
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1051 } |
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1052 } |
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1053 |
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1054 // Set the resource type |
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1055 switch (type) |
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|
1056 { |
269
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|
1057 case ResourceType_Patient: |
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|
1058 result["Type"] = "Patient"; |
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|
1059 break; |
198
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changeset
|
1060 |
269
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changeset
|
1061 case ResourceType_Study: |
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|
1062 result["Type"] = "Study"; |
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|
1063 break; |
199 | 1064 |
269
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|
1065 case ResourceType_Series: |
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|
1066 { |
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|
1067 result["Type"] = "Series"; |
434
ccf3a0a43dac
EnumerationDictionary
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diff
changeset
|
1068 result["Status"] = EnumerationToString(GetSeriesStatus(id)); |
198
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1069 |
1238 | 1070 int64_t i; |
1237 | 1071 if (GetMetadataAsInteger(i, id, MetadataType_Series_ExpectedNumberOfInstances)) |
1238 | 1072 result["ExpectedNumberOfInstances"] = static_cast<int>(i); |
269
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|
1073 else |
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changeset
|
1074 result["ExpectedNumberOfInstances"] = Json::nullValue; |
200
9c58b2b03cf0
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diff
changeset
|
1075 |
269
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1076 break; |
200
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1077 } |
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1078 |
269
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1079 case ResourceType_Instance: |
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1080 { |
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1081 result["Type"] = "Instance"; |
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1082 |
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1083 FileInfo attachment; |
1247 | 1084 if (!db_.LookupAttachment(attachment, id, FileContentType_Dicom)) |
269
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1085 { |
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1086 throw OrthancException(ErrorCode_InternalError); |
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1087 } |
200
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1088 |
269
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1089 result["FileSize"] = static_cast<unsigned int>(attachment.GetUncompressedSize()); |
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1090 result["FileUuid"] = attachment.GetUuid(); |
200
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diff
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1091 |
1238 | 1092 int64_t i; |
1237 | 1093 if (GetMetadataAsInteger(i, id, MetadataType_Instance_IndexInSeries)) |
1238 | 1094 result["IndexInSeries"] = static_cast<int>(i); |
269
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1095 else |
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1096 result["IndexInSeries"] = Json::nullValue; |
198
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1097 |
269
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1098 break; |
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1099 } |
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1100 |
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1101 default: |
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1102 throw OrthancException(ErrorCode_InternalError); |
198
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1103 } |
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1104 |
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1105 // Record the remaining information |
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1106 result["ID"] = publicId; |
1668
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diff
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|
1107 MainDicomTagsToJson(result, id, type); |
198
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1108 |
315 | 1109 std::string tmp; |
1110 | |
1247 | 1111 if (db_.LookupMetadata(tmp, id, MetadataType_AnonymizedFrom)) |
1236 | 1112 { |
315 | 1113 result["AnonymizedFrom"] = tmp; |
1236 | 1114 } |
315 | 1115 |
1247 | 1116 if (db_.LookupMetadata(tmp, id, MetadataType_ModifiedFrom)) |
1236 | 1117 { |
315 | 1118 result["ModifiedFrom"] = tmp; |
1236 | 1119 } |
315 | 1120 |
511
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|
1121 if (type == ResourceType_Patient || |
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1122 type == ResourceType_Study || |
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diff
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|
1123 type == ResourceType_Series) |
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1124 { |
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diff
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|
1125 result["IsStable"] = !unstableResources_.Contains(id); |
1148
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
1126 |
1247 | 1127 if (db_.LookupMetadata(tmp, id, MetadataType_LastUpdate)) |
1236 | 1128 { |
1148
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diff
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|
1129 result["LastUpdate"] = tmp; |
1236 | 1130 } |
511
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|
1131 } |
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1132 |
198
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1133 return true; |
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1134 } |
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1135 |
0 | 1136 |
232
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1137 bool ServerIndex::LookupAttachment(FileInfo& attachment, |
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|
1138 const std::string& instanceUuid, |
233 | 1139 FileContentType contentType) |
0 | 1140 { |
206
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diff
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|
1141 boost::mutex::scoped_lock lock(mutex_); |
0 | 1142 |
193
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diff
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|
1143 int64_t id; |
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diff
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|
1144 ResourceType type; |
1294 | 1145 if (!db_.LookupResource(id, type, instanceUuid)) |
192
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1146 { |
1113
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Refactoring of HttpOutput ("Content-Length" header is now always sent)
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
1147 throw OrthancException(ErrorCode_UnknownResource); |
192
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diff
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|
1148 } |
193
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1149 |
1247 | 1150 if (db_.LookupAttachment(attachment, id, contentType)) |
232
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1151 { |
233 | 1152 assert(attachment.GetContentType() == contentType); |
232
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|
1153 return true; |
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|
1154 } |
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|
1155 else |
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diff
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|
1156 { |
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|
1157 return false; |
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|
1158 } |
192
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|
1159 } |
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|
1160 |
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|
1161 |
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diff
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|
1162 |
1354 | 1163 void ServerIndex::GetAllUuids(std::list<std::string>& target, |
190 | 1164 ResourceType resourceType) |
0 | 1165 { |
1357 | 1166 boost::mutex::scoped_lock lock(mutex_); |
1167 db_.GetAllPublicIds(target, resourceType); | |
0 | 1168 } |
1169 | |
1170 | |
1509
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diff
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|
1171 void ServerIndex::GetAllUuids(std::list<std::string>& target, |
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|
1172 ResourceType resourceType, |
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|
1173 size_t since, |
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diff
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|
1174 size_t limit) |
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|
1175 { |
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|
1176 if (limit == 0) |
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1177 { |
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|
1178 target.clear(); |
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1179 return; |
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1180 } |
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|
1181 |
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diff
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|
1182 boost::mutex::scoped_lock lock(mutex_); |
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|
1183 db_.GetAllPublicIds(target, resourceType, since, limit); |
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|
1184 } |
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1185 |
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|
1186 |
1244 | 1187 template <typename T> |
1188 static void FormatLog(Json::Value& target, | |
1189 const std::list<T>& log, | |
1190 const std::string& name, | |
1191 bool done, | |
1192 int64_t since) | |
1240 | 1193 { |
1194 Json::Value items = Json::arrayValue; | |
1244 | 1195 for (typename std::list<T>::const_iterator |
1304 | 1196 it = log.begin(); it != log.end(); ++it) |
1240 | 1197 { |
1198 Json::Value item; | |
1199 it->Format(item); | |
1200 items.append(item); | |
1201 } | |
1202 | |
1203 target = Json::objectValue; | |
1244 | 1204 target[name] = items; |
1240 | 1205 target["Done"] = done; |
1206 | |
1305 | 1207 int64_t last = (log.empty() ? since : log.back().GetSeq()); |
1240 | 1208 target["Last"] = static_cast<int>(last); |
1209 } | |
1210 | |
1211 | |
1247 | 1212 void ServerIndex::GetChanges(Json::Value& target, |
204 | 1213 int64_t since, |
0 | 1214 unsigned int maxResults) |
1215 { | |
1240 | 1216 std::list<ServerIndexChange> changes; |
1217 bool done; | |
1218 | |
1219 { | |
1220 boost::mutex::scoped_lock lock(mutex_); | |
2717
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1221 |
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1222 // Fix wrt. Orthanc <= 1.3.2: A transaction was missing, as |
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|
1223 // "GetLastChange()" involves calls to "GetPublicId()" |
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|
1224 Transaction transaction(*this); |
1247 | 1225 db_.GetChanges(changes, done, since, maxResults); |
2717
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|
1226 transaction.Commit(0); |
1240 | 1227 } |
1228 | |
1244 | 1229 FormatLog(target, changes, "Changes", done, since); |
237
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diff
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1230 } |
0 | 1231 |
1240 | 1232 |
1247 | 1233 void ServerIndex::GetLastChange(Json::Value& target) |
237
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1234 { |
1240 | 1235 std::list<ServerIndexChange> changes; |
1236 | |
1237 { | |
1238 boost::mutex::scoped_lock lock(mutex_); | |
2717
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1239 |
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1240 // Fix wrt. Orthanc <= 1.3.2: A transaction was missing, as |
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1241 // "GetLastChange()" involves calls to "GetPublicId()" |
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|
1242 Transaction transaction(*this); |
1247 | 1243 db_.GetLastChange(changes); |
2717
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|
1244 transaction.Commit(0); |
1240 | 1245 } |
1246 | |
1244 | 1247 FormatLog(target, changes, "Changes", true, 0); |
0 | 1248 } |
231 | 1249 |
1240 | 1250 |
231 | 1251 void ServerIndex::LogExportedResource(const std::string& publicId, |
1252 const std::string& remoteModality) | |
1253 { | |
1254 boost::mutex::scoped_lock lock(mutex_); | |
1310
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|
1255 Transaction transaction(*this); |
231 | 1256 |
1257 int64_t id; | |
1258 ResourceType type; | |
1294 | 1259 if (!db_.LookupResource(id, type, publicId)) |
231 | 1260 { |
2573
3372c5255333
StoreScuJob, Orthanc Explorer for jobs
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|
1261 throw OrthancException(ErrorCode_InexistentItem); |
231 | 1262 } |
1263 | |
1264 std::string patientId; | |
1265 std::string studyInstanceUid; | |
1266 std::string seriesInstanceUid; | |
1267 std::string sopInstanceUid; | |
1268 | |
1269 int64_t currentId = id; | |
1270 ResourceType currentType = type; | |
1271 | |
1272 // Iteratively go up inside the patient/study/series/instance hierarchy | |
1273 bool done = false; | |
1274 while (!done) | |
1275 { | |
1276 DicomMap map; | |
1247 | 1277 db_.GetMainDicomTags(map, currentId); |
231 | 1278 |
1279 switch (currentType) | |
1280 { | |
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1281 case ResourceType_Patient: |
2090
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diff
changeset
|
1282 if (map.HasTag(DICOM_TAG_PATIENT_ID)) |
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1283 { |
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|
1284 patientId = map.GetValue(DICOM_TAG_PATIENT_ID).GetContent(); |
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|
1285 } |
269
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1286 done = true; |
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1287 break; |
231 | 1288 |
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1289 case ResourceType_Study: |
2090
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1290 if (map.HasTag(DICOM_TAG_STUDY_INSTANCE_UID)) |
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1291 { |
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1292 studyInstanceUid = map.GetValue(DICOM_TAG_STUDY_INSTANCE_UID).GetContent(); |
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1293 } |
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1294 currentType = ResourceType_Patient; |
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1295 break; |
231 | 1296 |
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1297 case ResourceType_Series: |
2090
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1298 if (map.HasTag(DICOM_TAG_SERIES_INSTANCE_UID)) |
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1299 { |
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1300 seriesInstanceUid = map.GetValue(DICOM_TAG_SERIES_INSTANCE_UID).GetContent(); |
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1301 } |
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1302 currentType = ResourceType_Study; |
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1303 break; |
231 | 1304 |
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1305 case ResourceType_Instance: |
2090
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1306 if (map.HasTag(DICOM_TAG_SOP_INSTANCE_UID)) |
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1307 { |
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1308 sopInstanceUid = map.GetValue(DICOM_TAG_SOP_INSTANCE_UID).GetContent(); |
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1309 } |
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1310 currentType = ResourceType_Series; |
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1311 break; |
231 | 1312 |
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1313 default: |
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1314 throw OrthancException(ErrorCode_InternalError); |
231 | 1315 } |
1316 | |
1317 // If we have not reached the Patient level, find the parent of | |
1318 // the current resource | |
1319 if (!done) | |
1320 { | |
1247 | 1321 bool ok = db_.LookupParent(currentId, currentId); |
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1322 assert(ok); |
231 | 1323 } |
1324 } | |
1325 | |
1246 | 1326 ExportedResource resource(-1, |
1327 type, | |
1328 publicId, | |
1329 remoteModality, | |
2475
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1330 SystemToolbox::GetNowIsoString(true /* use UTC time (not local time) */), |
1246 | 1331 patientId, |
1332 studyInstanceUid, | |
1333 seriesInstanceUid, | |
1334 sopInstanceUid); | |
1310
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1335 |
1247 | 1336 db_.LogExportedResource(resource); |
1310
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1337 transaction.Commit(0); |
231 | 1338 } |
1339 | |
1340 | |
1247 | 1341 void ServerIndex::GetExportedResources(Json::Value& target, |
231 | 1342 int64_t since, |
1343 unsigned int maxResults) | |
1344 { | |
1244 | 1345 std::list<ExportedResource> exported; |
1346 bool done; | |
1347 | |
1348 { | |
1349 boost::mutex::scoped_lock lock(mutex_); | |
1247 | 1350 db_.GetExportedResources(exported, done, since, maxResults); |
1244 | 1351 } |
1352 | |
1353 FormatLog(target, exported, "Exports", done, since); | |
231 | 1354 } |
237
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1355 |
1244 | 1356 |
1247 | 1357 void ServerIndex::GetLastExportedResource(Json::Value& target) |
237
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1358 { |
1244 | 1359 std::list<ExportedResource> exported; |
1360 | |
1361 { | |
1362 boost::mutex::scoped_lock lock(mutex_); | |
1247 | 1363 db_.GetLastExportedResource(exported); |
1244 | 1364 } |
1365 | |
1366 FormatLog(target, exported, "Exports", true, 0); | |
237
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1367 } |
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1368 |
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1369 |
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1370 bool ServerIndex::IsRecyclingNeeded(uint64_t instanceSize) |
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1371 { |
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1372 if (maximumStorageSize_ != 0) |
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1373 { |
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1374 uint64_t currentSize = currentStorageSize_ - listener_->GetSizeOfFilesToRemove(); |
1247 | 1375 assert(db_.GetTotalCompressedSize() == currentSize); |
278
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1376 |
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1377 if (currentSize + instanceSize > maximumStorageSize_) |
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1378 { |
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1379 return true; |
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1380 } |
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1381 } |
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1382 |
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1383 if (maximumPatients_ != 0) |
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1384 { |
1247 | 1385 uint64_t patientCount = db_.GetResourceCount(ResourceType_Patient); |
269
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1386 if (patientCount > maximumPatients_) |
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1387 { |
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1388 return true; |
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1389 } |
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1390 } |
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1391 |
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1392 return false; |
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1393 } |
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1394 |
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1395 |
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1396 void ServerIndex::Recycle(uint64_t instanceSize, |
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1397 const std::string& newPatientId) |
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1398 { |
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1399 if (!IsRecyclingNeeded(instanceSize)) |
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1400 { |
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1401 return; |
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1402 } |
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1403 |
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1404 // Check whether other DICOM instances from this patient are |
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1405 // already stored |
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1406 int64_t patientToAvoid; |
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1407 ResourceType type; |
1294 | 1408 bool hasPatientToAvoid = db_.LookupResource(patientToAvoid, type, newPatientId); |
268
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1409 |
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1410 if (hasPatientToAvoid && type != ResourceType_Patient) |
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1411 { |
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1412 throw OrthancException(ErrorCode_InternalError); |
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1413 } |
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1414 |
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1415 // Iteratively select patient to remove until there is enough |
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1416 // space in the DICOM store |
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1417 int64_t patientToRecycle; |
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1418 while (true) |
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1419 { |
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1420 // If other instances of this patient are already in the store, |
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1421 // we must avoid to recycle them |
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1422 bool ok = hasPatientToAvoid ? |
1247 | 1423 db_.SelectPatientToRecycle(patientToRecycle, patientToAvoid) : |
1424 db_.SelectPatientToRecycle(patientToRecycle); | |
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1425 |
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1426 if (!ok) |
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1427 { |
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1428 throw OrthancException(ErrorCode_FullStorage); |
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1429 } |
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1430 |
1331
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Prevent freeze on C-FIND if no DICOM tag is to be returned
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1431 VLOG(1) << "Recycling one patient"; |
1247 | 1432 db_.DeleteResource(patientToRecycle); |
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1433 |
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1434 if (!IsRecyclingNeeded(instanceSize)) |
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1435 { |
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1436 // OK, we're done |
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1437 break; |
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1438 } |
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1439 } |
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1440 } |
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1441 |
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1442 void ServerIndex::SetMaximumPatientCount(unsigned int count) |
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1443 { |
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1444 boost::mutex::scoped_lock lock(mutex_); |
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1445 maximumPatients_ = count; |
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1446 |
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1447 if (count == 0) |
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1448 { |
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1449 LOG(WARNING) << "No limit on the number of stored patients"; |
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1450 } |
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1451 else |
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1452 { |
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1453 LOG(WARNING) << "At most " << count << " patients will be stored"; |
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1454 } |
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1455 |
269
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1456 StandaloneRecycling(); |
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1457 } |
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1458 |
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1459 void ServerIndex::SetMaximumStorageSize(uint64_t size) |
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1460 { |
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1461 boost::mutex::scoped_lock lock(mutex_); |
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1462 maximumStorageSize_ = size; |
270
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1463 |
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1464 if (size == 0) |
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1465 { |
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1466 LOG(WARNING) << "No limit on the size of the storage area"; |
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1467 } |
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1468 else |
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1469 { |
440
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diff
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|
1470 LOG(WARNING) << "At most " << (size / MEGA_BYTES) << "MB will be used for the storage area"; |
270
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1471 } |
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1472 |
269
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1473 StandaloneRecycling(); |
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1474 } |
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1475 |
2825
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diff
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|
1476 void ServerIndex::SetOverwriteInstances(bool overwrite) |
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|
1477 { |
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diff
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|
1478 boost::mutex::scoped_lock lock(mutex_); |
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diff
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|
1479 overwrite_ = overwrite; |
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|
1480 } |
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diff
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|
1481 |
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|
1482 |
272
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1483 void ServerIndex::StandaloneRecycling() |
269
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1484 { |
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1485 // WARNING: No mutex here, do not include this as a public method |
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1486 Transaction t(*this); |
269
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1487 Recycle(0, ""); |
278
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1488 t.Commit(0); |
269
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1489 } |
272
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|
1490 |
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1491 |
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1492 bool ServerIndex::IsProtectedPatient(const std::string& publicId) |
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1493 { |
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1494 boost::mutex::scoped_lock lock(mutex_); |
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1495 |
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1496 // Lookup for the requested resource |
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1497 int64_t id; |
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1498 ResourceType type; |
1294 | 1499 if (!db_.LookupResource(id, type, publicId) || |
272
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1500 type != ResourceType_Patient) |
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1501 { |
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1502 throw OrthancException(ErrorCode_ParameterOutOfRange); |
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1503 } |
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1504 |
1247 | 1505 return db_.IsProtectedPatient(id); |
272
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1506 } |
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|
1507 |
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1508 |
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1509 void ServerIndex::SetProtectedPatient(const std::string& publicId, |
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1510 bool isProtected) |
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1511 { |
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1512 boost::mutex::scoped_lock lock(mutex_); |
1310
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1513 Transaction transaction(*this); |
272
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1514 |
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1515 // Lookup for the requested resource |
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1516 int64_t id; |
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1517 ResourceType type; |
1294 | 1518 if (!db_.LookupResource(id, type, publicId) || |
272
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1519 type != ResourceType_Patient) |
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1520 { |
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1521 throw OrthancException(ErrorCode_ParameterOutOfRange); |
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1522 } |
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1523 |
1247 | 1524 db_.SetProtectedPatient(id, isProtected); |
1310
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1525 transaction.Commit(0); |
272
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1526 |
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1527 if (isProtected) |
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1528 LOG(INFO) << "Patient " << publicId << " has been protected"; |
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1529 else |
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1530 LOG(INFO) << "Patient " << publicId << " has been unprotected"; |
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1531 } |
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1532 |
304 | 1533 |
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1534 void ServerIndex::GetChildren(std::list<std::string>& result, |
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1535 const std::string& publicId) |
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1536 { |
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1537 result.clear(); |
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1538 |
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1539 boost::mutex::scoped_lock lock(mutex_); |
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1540 |
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1541 ResourceType type; |
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1542 int64_t resource; |
1294 | 1543 if (!db_.LookupResource(resource, type, publicId)) |
714
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1544 { |
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1545 throw OrthancException(ErrorCode_UnknownResource); |
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1546 } |
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1547 |
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1548 if (type == ResourceType_Instance) |
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1549 { |
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1550 // An instance cannot have a child |
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1551 throw OrthancException(ErrorCode_BadParameterType); |
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1552 } |
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1553 |
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1554 std::list<int64_t> tmp; |
1247 | 1555 db_.GetChildrenInternalId(tmp, resource); |
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1556 |
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1557 for (std::list<int64_t>::const_iterator |
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1558 it = tmp.begin(); it != tmp.end(); ++it) |
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1559 { |
1247 | 1560 result.push_back(db_.GetPublicId(*it)); |
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1561 } |
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1562 } |
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|
1563 |
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|
1564 |
304 | 1565 void ServerIndex::GetChildInstances(std::list<std::string>& result, |
1566 const std::string& publicId) | |
1567 { | |
1568 result.clear(); | |
1569 | |
1570 boost::mutex::scoped_lock lock(mutex_); | |
1571 | |
1572 ResourceType type; | |
1573 int64_t top; | |
1294 | 1574 if (!db_.LookupResource(top, type, publicId)) |
304 | 1575 { |
1576 throw OrthancException(ErrorCode_UnknownResource); | |
1577 } | |
1578 | |
1579 if (type == ResourceType_Instance) | |
1580 { | |
1581 // The resource is already an instance: Do not go down the hierarchy | |
1582 result.push_back(publicId); | |
1583 return; | |
1584 } | |
1585 | |
1586 std::stack<int64_t> toExplore; | |
1587 toExplore.push(top); | |
1588 | |
1589 std::list<int64_t> tmp; | |
1590 | |
1591 while (!toExplore.empty()) | |
1592 { | |
1593 // Get the internal ID of the current resource | |
1594 int64_t resource = toExplore.top(); | |
1595 toExplore.pop(); | |
1596 | |
1247 | 1597 if (db_.GetResourceType(resource) == ResourceType_Instance) |
304 | 1598 { |
1247 | 1599 result.push_back(db_.GetPublicId(resource)); |
304 | 1600 } |
1601 else | |
1602 { | |
1603 // Tag all the children of this resource as to be explored | |
1247 | 1604 db_.GetChildrenInternalId(tmp, resource); |
304 | 1605 for (std::list<int64_t>::const_iterator |
656 | 1606 it = tmp.begin(); it != tmp.end(); ++it) |
304 | 1607 { |
1608 toExplore.push(*it); | |
1609 } | |
1610 } | |
1611 } | |
1612 } | |
1613 | |
306
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1614 |
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1615 void ServerIndex::SetMetadata(const std::string& publicId, |
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1616 MetadataType type, |
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1617 const std::string& value) |
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1618 { |
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1619 boost::mutex::scoped_lock lock(mutex_); |
1773
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1620 Transaction t(*this); |
306
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1621 |
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1622 ResourceType rtype; |
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1623 int64_t id; |
1294 | 1624 if (!db_.LookupResource(id, rtype, publicId)) |
306
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1625 { |
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1626 throw OrthancException(ErrorCode_UnknownResource); |
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1627 } |
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1628 |
1247 | 1629 db_.SetMetadata(id, type, value); |
1773
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1630 |
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1631 if (IsUserMetadata(type)) |
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1632 { |
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1633 LogChange(id, ChangeType_UpdatedMetadata, rtype, publicId); |
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1634 } |
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1635 |
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1636 t.Commit(0); |
306
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1637 } |
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1638 |
438 | 1639 |
1640 void ServerIndex::DeleteMetadata(const std::string& publicId, | |
1641 MetadataType type) | |
1642 { | |
1643 boost::mutex::scoped_lock lock(mutex_); | |
1773
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1644 Transaction t(*this); |
438 | 1645 |
1646 ResourceType rtype; | |
1647 int64_t id; | |
1294 | 1648 if (!db_.LookupResource(id, rtype, publicId)) |
438 | 1649 { |
1650 throw OrthancException(ErrorCode_UnknownResource); | |
1651 } | |
1652 | |
1247 | 1653 db_.DeleteMetadata(id, type); |
1773
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1654 |
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1655 if (IsUserMetadata(type)) |
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|
1656 { |
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|
1657 LogChange(id, ChangeType_UpdatedMetadata, rtype, publicId); |
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1658 } |
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|
1659 |
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1660 t.Commit(0); |
438 | 1661 } |
1662 | |
1663 | |
306
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1664 bool ServerIndex::LookupMetadata(std::string& target, |
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1665 const std::string& publicId, |
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1666 MetadataType type) |
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1667 { |
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1668 boost::mutex::scoped_lock lock(mutex_); |
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1669 |
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1670 ResourceType rtype; |
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1671 int64_t id; |
1294 | 1672 if (!db_.LookupResource(id, rtype, publicId)) |
306
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1673 { |
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1674 throw OrthancException(ErrorCode_UnknownResource); |
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1675 } |
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1676 |
1247 | 1677 return db_.LookupMetadata(target, id, type); |
306
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1678 } |
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1679 |
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1680 |
739 | 1681 void ServerIndex::ListAvailableMetadata(std::list<MetadataType>& target, |
436
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1682 const std::string& publicId) |
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1683 { |
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1684 boost::mutex::scoped_lock lock(mutex_); |
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1685 |
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|
1686 ResourceType rtype; |
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|
1687 int64_t id; |
1294 | 1688 if (!db_.LookupResource(id, rtype, publicId)) |
436
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|
1689 { |
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1690 throw OrthancException(ErrorCode_UnknownResource); |
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|
1691 } |
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|
1692 |
1247 | 1693 db_.ListAvailableMetadata(target, id); |
436
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|
1694 } |
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|
1695 |
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|
1696 |
697
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|
1697 void ServerIndex::ListAvailableAttachments(std::list<FileContentType>& target, |
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|
1698 const std::string& publicId, |
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|
1699 ResourceType expectedType) |
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diff
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|
1700 { |
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diff
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|
1701 boost::mutex::scoped_lock lock(mutex_); |
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diff
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|
1702 |
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diff
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|
1703 ResourceType type; |
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diff
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|
1704 int64_t id; |
1294 | 1705 if (!db_.LookupResource(id, type, publicId) || |
697
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diff
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|
1706 expectedType != type) |
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diff
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|
1707 { |
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diff
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|
1708 throw OrthancException(ErrorCode_UnknownResource); |
dd1ce9a2844c
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diff
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|
1709 } |
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diff
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|
1710 |
1247 | 1711 db_.ListAvailableAttachments(target, id); |
697
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diff
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|
1712 } |
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diff
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|
1713 |
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|
1714 |
306
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|
1715 bool ServerIndex::LookupParent(std::string& target, |
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1716 const std::string& publicId) |
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1717 { |
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|
1718 boost::mutex::scoped_lock lock(mutex_); |
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1719 |
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1720 ResourceType type; |
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|
1721 int64_t id; |
1294 | 1722 if (!db_.LookupResource(id, type, publicId)) |
306
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1723 { |
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1724 throw OrthancException(ErrorCode_UnknownResource); |
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1725 } |
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|
1726 |
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|
1727 int64_t parentId; |
1247 | 1728 if (db_.LookupParent(parentId, id)) |
306
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1729 { |
1247 | 1730 target = db_.GetPublicId(parentId); |
306
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1731 return true; |
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1732 } |
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|
1733 else |
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|
1734 { |
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1735 return false; |
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1736 } |
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1737 } |
310 | 1738 |
1739 | |
1740 uint64_t ServerIndex::IncrementGlobalSequence(GlobalProperty sequence) | |
1741 { | |
1742 boost::mutex::scoped_lock lock(mutex_); | |
1310
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1743 Transaction transaction(*this); |
311 | 1744 |
1237 | 1745 uint64_t seq = IncrementGlobalSequenceInternal(sequence); |
1310
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|
1746 transaction.Commit(0); |
311 | 1747 |
1748 return seq; | |
310 | 1749 } |
315 | 1750 |
1751 | |
1752 | |
1753 void ServerIndex::LogChange(ChangeType changeType, | |
1754 const std::string& publicId) | |
1755 { | |
1756 boost::mutex::scoped_lock lock(mutex_); | |
1310
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|
1757 Transaction transaction(*this); |
315 | 1758 |
1759 int64_t id; | |
1760 ResourceType type; | |
1294 | 1761 if (!db_.LookupResource(id, type, publicId)) |
315 | 1762 { |
1763 throw OrthancException(ErrorCode_UnknownResource); | |
1764 } | |
1765 | |
1237 | 1766 LogChange(id, changeType, type, publicId); |
1310
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|
1767 transaction.Commit(0); |
315 | 1768 } |
413
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|
1769 |
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diff
changeset
|
1770 |
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|
1771 void ServerIndex::DeleteChanges() |
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|
1772 { |
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|
1773 boost::mutex::scoped_lock lock(mutex_); |
1286 | 1774 db_.ClearChanges(); |
413
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|
1775 } |
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changeset
|
1776 |
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|
1777 void ServerIndex::DeleteExportedResources() |
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|
1778 { |
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changeset
|
1779 boost::mutex::scoped_lock lock(mutex_); |
1286 | 1780 db_.ClearExportedResources(); |
413
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1781 } |
440
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|
1782 |
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diff
changeset
|
1783 |
646 | 1784 void ServerIndex::GetStatisticsInternal(/* out */ uint64_t& compressedSize, |
1785 /* out */ uint64_t& uncompressedSize, | |
1786 /* out */ unsigned int& countStudies, | |
1787 /* out */ unsigned int& countSeries, | |
1788 /* out */ unsigned int& countInstances, | |
1789 /* in */ int64_t id, | |
1790 /* in */ ResourceType type) | |
440
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diff
changeset
|
1791 { |
646 | 1792 std::stack<int64_t> toExplore; |
1793 toExplore.push(id); | |
440
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1794 |
646 | 1795 countInstances = 0; |
1796 countSeries = 0; | |
1797 countStudies = 0; | |
1798 compressedSize = 0; | |
1799 uncompressedSize = 0; | |
440
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1800 |
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1801 while (!toExplore.empty()) |
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1802 { |
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1803 // Get the internal ID of the current resource |
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1804 int64_t resource = toExplore.top(); |
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1805 toExplore.pop(); |
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1806 |
1247 | 1807 ResourceType thisType = db_.GetResourceType(resource); |
440
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1808 |
702
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1809 std::list<FileContentType> f; |
1247 | 1810 db_.ListAvailableAttachments(f, resource); |
702
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1811 |
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1812 for (std::list<FileContentType>::const_iterator |
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1813 it = f.begin(); it != f.end(); ++it) |
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1814 { |
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1815 FileInfo attachment; |
1247 | 1816 if (db_.LookupAttachment(attachment, resource, *it)) |
702
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1817 { |
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1818 compressedSize += attachment.GetCompressedSize(); |
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1819 uncompressedSize += attachment.GetUncompressedSize(); |
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1820 } |
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1821 } |
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1822 |
440
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1823 if (thisType == ResourceType_Instance) |
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1824 { |
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1825 countInstances++; |
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1826 } |
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1827 else |
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1828 { |
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1829 switch (thisType) |
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1830 { |
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1831 case ResourceType_Study: |
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1832 countStudies++; |
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1833 break; |
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1834 |
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1835 case ResourceType_Series: |
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1836 countSeries++; |
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1837 break; |
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1838 |
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1839 default: |
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1840 break; |
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1841 } |
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1842 |
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1843 // Tag all the children of this resource as to be explored |
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1844 std::list<int64_t> tmp; |
1247 | 1845 db_.GetChildrenInternalId(tmp, resource); |
440
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1846 for (std::list<int64_t>::const_iterator |
656 | 1847 it = tmp.begin(); it != tmp.end(); ++it) |
440
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1848 { |
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1849 toExplore.push(*it); |
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1850 } |
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1851 } |
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1852 } |
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1853 |
646 | 1854 if (countStudies == 0) |
1855 { | |
1856 countStudies = 1; | |
1857 } | |
1858 | |
1859 if (countSeries == 0) | |
1860 { | |
1861 countSeries = 1; | |
1862 } | |
1863 } | |
1864 | |
1865 | |
1866 | |
1867 void ServerIndex::GetStatistics(Json::Value& target, | |
1868 const std::string& publicId) | |
1869 { | |
1870 boost::mutex::scoped_lock lock(mutex_); | |
1871 | |
1872 ResourceType type; | |
1873 int64_t top; | |
1294 | 1874 if (!db_.LookupResource(top, type, publicId)) |
646 | 1875 { |
1876 throw OrthancException(ErrorCode_UnknownResource); | |
1877 } | |
1878 | |
1879 uint64_t uncompressedSize; | |
1880 uint64_t compressedSize; | |
1881 unsigned int countStudies; | |
1882 unsigned int countSeries; | |
1883 unsigned int countInstances; | |
1884 GetStatisticsInternal(compressedSize, uncompressedSize, countStudies, | |
1885 countSeries, countInstances, top, type); | |
1886 | |
440
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1887 target = Json::objectValue; |
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1888 target["DiskSize"] = boost::lexical_cast<std::string>(compressedSize); |
1310
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1889 target["DiskSizeMB"] = static_cast<unsigned int>(compressedSize / MEGA_BYTES); |
440
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1890 target["UncompressedSize"] = boost::lexical_cast<std::string>(uncompressedSize); |
1310
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1891 target["UncompressedSizeMB"] = static_cast<unsigned int>(uncompressedSize / MEGA_BYTES); |
440
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1892 |
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1893 switch (type) |
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1894 { |
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1895 // Do NOT add "break" below this point! |
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1896 case ResourceType_Patient: |
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1897 target["CountStudies"] = countStudies; |
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1898 |
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1899 case ResourceType_Study: |
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1900 target["CountSeries"] = countSeries; |
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1901 |
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1902 case ResourceType_Series: |
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1903 target["CountInstances"] = countInstances; |
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1904 |
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1905 case ResourceType_Instance: |
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1906 default: |
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1907 break; |
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1908 } |
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1909 } |
511
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1910 |
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1911 |
646 | 1912 void ServerIndex::GetStatistics(/* out */ uint64_t& compressedSize, |
1913 /* out */ uint64_t& uncompressedSize, | |
1914 /* out */ unsigned int& countStudies, | |
1915 /* out */ unsigned int& countSeries, | |
1916 /* out */ unsigned int& countInstances, | |
1917 const std::string& publicId) | |
1918 { | |
1919 boost::mutex::scoped_lock lock(mutex_); | |
1920 | |
1921 ResourceType type; | |
1922 int64_t top; | |
1294 | 1923 if (!db_.LookupResource(top, type, publicId)) |
646 | 1924 { |
1925 throw OrthancException(ErrorCode_UnknownResource); | |
1926 } | |
1927 | |
1928 GetStatisticsInternal(compressedSize, uncompressedSize, countStudies, | |
1929 countSeries, countInstances, top, type); | |
1930 } | |
1931 | |
1932 | |
2665
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1933 void ServerIndex::UnstableResourcesMonitorThread(ServerIndex* that, |
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1934 unsigned int threadSleep) |
511
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1935 { |
2069
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1936 int stableAge = Configuration::GetGlobalUnsignedIntegerParameter("StableAge", 60); |
511
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1937 if (stableAge <= 0) |
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1938 { |
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1939 stableAge = 60; |
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1940 } |
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1941 |
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1942 LOG(INFO) << "Starting the monitor for stable resources (stable age = " << stableAge << ")"; |
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1943 |
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1944 while (!that->done_) |
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1945 { |
2665
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1946 // Check for stable resources each few seconds |
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1947 boost::this_thread::sleep(boost::posix_time::milliseconds(threadSleep)); |
511
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1948 |
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1949 boost::mutex::scoped_lock lock(that->mutex_); |
513 | 1950 |
511
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1951 while (!that->unstableResources_.IsEmpty() && |
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1952 that->unstableResources_.GetOldestPayload().GetAge() > static_cast<unsigned int>(stableAge)) |
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1953 { |
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1954 // This DICOM resource has not received any new instance for |
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1955 // some time. It can be considered as stable. |
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1956 |
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1957 UnstableResourcePayload payload; |
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1958 int64_t id = that->unstableResources_.RemoveOldest(payload); |
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1959 |
513 | 1960 // Ensure that the resource is still existing before logging the change |
1247 | 1961 if (that->db_.IsExistingResource(id)) |
511
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1962 { |
1177
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1963 switch (payload.GetResourceType()) |
513 | 1964 { |
1177
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1965 case ResourceType_Patient: |
1237 | 1966 that->LogChange(id, ChangeType_StablePatient, ResourceType_Patient, payload.GetPublicId()); |
513 | 1967 break; |
511
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1968 |
1177
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1969 case ResourceType_Study: |
1237 | 1970 that->LogChange(id, ChangeType_StableStudy, ResourceType_Study, payload.GetPublicId()); |
513 | 1971 break; |
511
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1972 |
1177
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1973 case ResourceType_Series: |
1237 | 1974 that->LogChange(id, ChangeType_StableSeries, ResourceType_Series, payload.GetPublicId()); |
513 | 1975 break; |
1976 | |
1977 default: | |
1978 throw OrthancException(ErrorCode_InternalError); | |
1979 } | |
1980 | |
1981 //LOG(INFO) << "Stable resource: " << EnumerationToString(payload.type_) << " " << id; | |
511
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1982 } |
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|
1983 } |
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1984 } |
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|
1985 |
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1986 LOG(INFO) << "Closing the monitor thread for stable resources"; |
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1987 } |
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|
1988 |
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|
1989 |
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1990 void ServerIndex::MarkAsUnstable(int64_t id, |
1177
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1991 Orthanc::ResourceType type, |
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|
1992 const std::string& publicId) |
511
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1993 { |
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|
1994 // WARNING: Before calling this method, "mutex_" must be locked. |
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|
1995 |
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diff
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|
1996 assert(type == Orthanc::ResourceType_Patient || |
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|
1997 type == Orthanc::ResourceType_Study || |
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1998 type == Orthanc::ResourceType_Series); |
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|
1999 |
1177
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|
2000 UnstableResourcePayload payload(type, publicId); |
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|
2001 unstableResources_.AddOrMakeMostRecent(id, payload); |
511
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diff
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|
2002 //LOG(INFO) << "Unstable resource: " << EnumerationToString(type) << " " << id; |
1189
6b9b02a16e99
NewChildInstance change type
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diff
changeset
|
2003 |
1237 | 2004 LogChange(id, ChangeType_NewChildInstance, type, publicId); |
511
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|
2005 } |
521 | 2006 |
2007 | |
2008 | |
1728
4941494b5dd8
rename LookupIdentifier as LookupIdentifierExact
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diff
changeset
|
2009 void ServerIndex::LookupIdentifierExact(std::list<std::string>& result, |
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rename LookupIdentifier as LookupIdentifierExact
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diff
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|
2010 ResourceType level, |
4941494b5dd8
rename LookupIdentifier as LookupIdentifierExact
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diff
changeset
|
2011 const DicomTag& tag, |
4941494b5dd8
rename LookupIdentifier as LookupIdentifierExact
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diff
changeset
|
2012 const std::string& value) |
615 | 2013 { |
1727 | 2014 assert((level == ResourceType_Patient && tag == DICOM_TAG_PATIENT_ID) || |
2015 (level == ResourceType_Study && tag == DICOM_TAG_STUDY_INSTANCE_UID) || | |
2016 (level == ResourceType_Study && tag == DICOM_TAG_ACCESSION_NUMBER) || | |
2017 (level == ResourceType_Series && tag == DICOM_TAG_SERIES_INSTANCE_UID) || | |
2018 (level == ResourceType_Instance && tag == DICOM_TAG_SOP_INSTANCE_UID)); | |
1725 | 2019 |
615 | 2020 result.clear(); |
2021 | |
2022 boost::mutex::scoped_lock lock(mutex_); | |
2023 | |
1746 | 2024 LookupIdentifierQuery query(level); |
2025 query.AddConstraint(tag, IdentifierConstraintType_Equal, value); | |
2026 query.Apply(result, db_); | |
615 | 2027 } |
2028 | |
2029 | |
699
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add attachments to resources
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changeset
|
2030 StoreStatus ServerIndex::AddAttachment(const FileInfo& attachment, |
2929e17f8447
add attachments to resources
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diff
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|
2031 const std::string& publicId) |
2929e17f8447
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diff
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|
2032 { |
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diff
changeset
|
2033 boost::mutex::scoped_lock lock(mutex_); |
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diff
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|
2034 |
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diff
changeset
|
2035 Transaction t(*this); |
2929e17f8447
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diff
changeset
|
2036 |
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diff
changeset
|
2037 ResourceType resourceType; |
2929e17f8447
add attachments to resources
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diff
changeset
|
2038 int64_t resourceId; |
1294 | 2039 if (!db_.LookupResource(resourceId, resourceType, publicId)) |
699
2929e17f8447
add attachments to resources
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diff
changeset
|
2040 { |
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diff
changeset
|
2041 return StoreStatus_Failure; // Inexistent resource |
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diff
changeset
|
2042 } |
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diff
changeset
|
2043 |
704
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diff
changeset
|
2044 // Remove possible previous attachment |
1247 | 2045 db_.DeleteAttachment(resourceId, attachment.GetContentType()); |
699
2929e17f8447
add attachments to resources
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diff
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|
2046 |
704
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diff
changeset
|
2047 // Locate the patient of the target resource |
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recycling with custom attachments
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diff
changeset
|
2048 int64_t patientId = resourceId; |
4789da60d655
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diff
changeset
|
2049 for (;;) |
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diff
changeset
|
2050 { |
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diff
changeset
|
2051 int64_t parent; |
1247 | 2052 if (db_.LookupParent(parent, patientId)) |
704
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recycling with custom attachments
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diff
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|
2053 { |
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diff
changeset
|
2054 // We have not reached the patient level yet |
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diff
changeset
|
2055 patientId = parent; |
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diff
changeset
|
2056 } |
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diff
changeset
|
2057 else |
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diff
changeset
|
2058 { |
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diff
changeset
|
2059 // We have reached the patient level |
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diff
changeset
|
2060 break; |
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diff
changeset
|
2061 } |
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diff
changeset
|
2062 } |
4789da60d655
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diff
changeset
|
2063 |
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diff
changeset
|
2064 // Possibly apply the recycling mechanism while preserving this patient |
1247 | 2065 assert(db_.GetResourceType(patientId) == ResourceType_Patient); |
2066 Recycle(attachment.GetCompressedSize(), db_.GetPublicId(patientId)); | |
704
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diff
changeset
|
2067 |
1247 | 2068 db_.AddAttachment(resourceId, attachment); |
699
2929e17f8447
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diff
changeset
|
2069 |
1773
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New UpdatedAttachment and UpdatedMetadata events in plugins
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diff
changeset
|
2070 if (IsUserContentType(attachment.GetContentType())) |
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New UpdatedAttachment and UpdatedMetadata events in plugins
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diff
changeset
|
2071 { |
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New UpdatedAttachment and UpdatedMetadata events in plugins
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diff
changeset
|
2072 LogChange(resourceId, ChangeType_UpdatedAttachment, resourceType, publicId); |
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New UpdatedAttachment and UpdatedMetadata events in plugins
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diff
changeset
|
2073 } |
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changeset
|
2074 |
699
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diff
changeset
|
2075 t.Commit(attachment.GetCompressedSize()); |
2929e17f8447
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changeset
|
2076 |
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diff
changeset
|
2077 return StoreStatus_Success; |
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|
2078 } |
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changeset
|
2079 |
702
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changeset
|
2080 |
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changeset
|
2081 void ServerIndex::DeleteAttachment(const std::string& publicId, |
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changeset
|
2082 FileContentType type) |
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diff
changeset
|
2083 { |
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diff
changeset
|
2084 boost::mutex::scoped_lock lock(mutex_); |
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diff
changeset
|
2085 Transaction t(*this); |
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diff
changeset
|
2086 |
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diff
changeset
|
2087 ResourceType rtype; |
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diff
changeset
|
2088 int64_t id; |
1294 | 2089 if (!db_.LookupResource(id, rtype, publicId)) |
702
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diff
changeset
|
2090 { |
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changeset
|
2091 throw OrthancException(ErrorCode_UnknownResource); |
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diff
changeset
|
2092 } |
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diff
changeset
|
2093 |
1247 | 2094 db_.DeleteAttachment(id, type); |
702
7592a48e97e4
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diff
changeset
|
2095 |
1773
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New UpdatedAttachment and UpdatedMetadata events in plugins
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changeset
|
2096 if (IsUserContentType(type)) |
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New UpdatedAttachment and UpdatedMetadata events in plugins
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diff
changeset
|
2097 { |
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diff
changeset
|
2098 LogChange(id, ChangeType_UpdatedAttachment, rtype, publicId); |
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diff
changeset
|
2099 } |
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diff
changeset
|
2100 |
702
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diff
changeset
|
2101 t.Commit(0); |
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changeset
|
2102 } |
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changeset
|
2103 |
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changeset
|
2104 |
1002
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changeset
|
2105 bool ServerIndex::GetMetadata(Json::Value& target, |
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changeset
|
2106 const std::string& publicId) |
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changeset
|
2107 { |
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changeset
|
2108 boost::mutex::scoped_lock lock(mutex_); |
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changeset
|
2109 |
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changeset
|
2110 target = Json::objectValue; |
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changeset
|
2111 |
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diff
changeset
|
2112 ResourceType type; |
b067017a8a5b
anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
831
diff
changeset
|
2113 int64_t id; |
1294 | 2114 if (!db_.LookupResource(id, type, publicId)) |
1002
b067017a8a5b
anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
831
diff
changeset
|
2115 { |
b067017a8a5b
anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
831
diff
changeset
|
2116 return false; |
b067017a8a5b
anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
831
diff
changeset
|
2117 } |
b067017a8a5b
anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
831
diff
changeset
|
2118 |
b067017a8a5b
anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
831
diff
changeset
|
2119 std::list<MetadataType> metadata; |
1247 | 2120 db_.ListAvailableMetadata(metadata, id); |
1002
b067017a8a5b
anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
831
diff
changeset
|
2121 |
b067017a8a5b
anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
831
diff
changeset
|
2122 for (std::list<MetadataType>::const_iterator |
1304 | 2123 it = metadata.begin(); it != metadata.end(); ++it) |
1002
b067017a8a5b
anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
831
diff
changeset
|
2124 { |
b067017a8a5b
anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2125 std::string key = EnumerationToString(*it); |
1238 | 2126 |
2127 std::string value; | |
1247 | 2128 if (!db_.LookupMetadata(value, id, *it)) |
1238 | 2129 { |
2130 value.clear(); | |
2131 } | |
2132 | |
1002
b067017a8a5b
anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
831
diff
changeset
|
2133 target[key] = value; |
b067017a8a5b
anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
831
diff
changeset
|
2134 } |
b067017a8a5b
anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
831
diff
changeset
|
2135 |
b067017a8a5b
anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
831
diff
changeset
|
2136 return true; |
b067017a8a5b
anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
831
diff
changeset
|
2137 } |
1218
efece308018e
report database version in /system
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1198
diff
changeset
|
2138 |
efece308018e
report database version in /system
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1198
diff
changeset
|
2139 |
1249
40725595aaf0
Plugins can get/set global properties to save their configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1247
diff
changeset
|
2140 void ServerIndex::SetGlobalProperty(GlobalProperty property, |
40725595aaf0
Plugins can get/set global properties to save their configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1247
diff
changeset
|
2141 const std::string& value) |
40725595aaf0
Plugins can get/set global properties to save their configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1247
diff
changeset
|
2142 { |
40725595aaf0
Plugins can get/set global properties to save their configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1247
diff
changeset
|
2143 boost::mutex::scoped_lock lock(mutex_); |
40725595aaf0
Plugins can get/set global properties to save their configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1247
diff
changeset
|
2144 db_.SetGlobalProperty(property, value); |
40725595aaf0
Plugins can get/set global properties to save their configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1247
diff
changeset
|
2145 } |
40725595aaf0
Plugins can get/set global properties to save their configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1247
diff
changeset
|
2146 |
40725595aaf0
Plugins can get/set global properties to save their configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1247
diff
changeset
|
2147 |
2668
d26dd081df97
saving jobs engine on exit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2665
diff
changeset
|
2148 bool ServerIndex::LookupGlobalProperty(std::string& value, |
d26dd081df97
saving jobs engine on exit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2665
diff
changeset
|
2149 GlobalProperty property) |
d26dd081df97
saving jobs engine on exit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2665
diff
changeset
|
2150 { |
d26dd081df97
saving jobs engine on exit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2665
diff
changeset
|
2151 boost::mutex::scoped_lock lock(mutex_); |
d26dd081df97
saving jobs engine on exit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2665
diff
changeset
|
2152 return db_.LookupGlobalProperty(value, property); |
d26dd081df97
saving jobs engine on exit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2665
diff
changeset
|
2153 } |
d26dd081df97
saving jobs engine on exit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2665
diff
changeset
|
2154 |
d26dd081df97
saving jobs engine on exit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2665
diff
changeset
|
2155 |
1218
efece308018e
report database version in /system
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1198
diff
changeset
|
2156 std::string ServerIndex::GetGlobalProperty(GlobalProperty property, |
efece308018e
report database version in /system
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1198
diff
changeset
|
2157 const std::string& defaultValue) |
efece308018e
report database version in /system
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1198
diff
changeset
|
2158 { |
1239 | 2159 std::string value; |
2668
d26dd081df97
saving jobs engine on exit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2665
diff
changeset
|
2160 |
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2665
diff
changeset
|
2161 if (LookupGlobalProperty(value, property)) |
1239 | 2162 { |
2163 return value; | |
2164 } | |
2165 else | |
2166 { | |
2167 return defaultValue; | |
2168 } | |
1218
efece308018e
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1198
diff
changeset
|
2169 } |
efece308018e
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1198
diff
changeset
|
2170 |
1352 | 2171 |
2172 bool ServerIndex::GetMainDicomTags(DicomMap& result, | |
2173 const std::string& publicId, | |
1677
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1676
diff
changeset
|
2174 ResourceType expectedType, |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1676
diff
changeset
|
2175 ResourceType levelOfInterest) |
1352 | 2176 { |
1677
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1676
diff
changeset
|
2177 // Yes, the following test could be shortened, but we wish to make it as clear as possible |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1676
diff
changeset
|
2178 if (!(expectedType == ResourceType_Patient && levelOfInterest == ResourceType_Patient) && |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1676
diff
changeset
|
2179 !(expectedType == ResourceType_Study && levelOfInterest == ResourceType_Patient) && |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1676
diff
changeset
|
2180 !(expectedType == ResourceType_Study && levelOfInterest == ResourceType_Study) && |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
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1676
diff
changeset
|
2181 !(expectedType == ResourceType_Series && levelOfInterest == ResourceType_Series) && |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
2182 !(expectedType == ResourceType_Instance && levelOfInterest == ResourceType_Instance)) |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
2183 { |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1676
diff
changeset
|
2184 throw OrthancException(ErrorCode_ParameterOutOfRange); |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2185 } |
a903d57d9f0c
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
2186 |
1352 | 2187 result.Clear(); |
2188 | |
2189 boost::mutex::scoped_lock lock(mutex_); | |
2190 | |
2191 // Lookup for the requested resource | |
2192 int64_t id; | |
2193 ResourceType type; | |
2194 if (!db_.LookupResource(id, type, publicId) || | |
2195 type != expectedType) | |
2196 { | |
2197 return false; | |
2198 } | |
1677
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
2199 |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1676
diff
changeset
|
2200 if (type == ResourceType_Study) |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1676
diff
changeset
|
2201 { |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2202 DicomMap tmp; |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1676
diff
changeset
|
2203 db_.GetMainDicomTags(tmp, id); |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2204 |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1676
diff
changeset
|
2205 switch (levelOfInterest) |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2206 { |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1676
diff
changeset
|
2207 case ResourceType_Patient: |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1676
diff
changeset
|
2208 tmp.ExtractPatientInformation(result); |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2209 return true; |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1676
diff
changeset
|
2210 |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1676
diff
changeset
|
2211 case ResourceType_Study: |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1676
diff
changeset
|
2212 tmp.ExtractStudyInformation(result); |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1676
diff
changeset
|
2213 return true; |
a903d57d9f0c
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1676
diff
changeset
|
2214 |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2215 default: |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1676
diff
changeset
|
2216 throw OrthancException(ErrorCode_InternalError); |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
2217 } |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2218 } |
1352 | 2219 else |
2220 { | |
2221 db_.GetMainDicomTags(result, id); | |
2222 return true; | |
2223 } | |
2224 } | |
1555
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1509
diff
changeset
|
2225 |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1509
diff
changeset
|
2226 |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1509
diff
changeset
|
2227 bool ServerIndex::LookupResourceType(ResourceType& type, |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2228 const std::string& publicId) |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
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changeset
|
2229 { |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1509
diff
changeset
|
2230 boost::mutex::scoped_lock lock(mutex_); |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
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changeset
|
2231 |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
2232 int64_t id; |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
2233 return db_.LookupResource(id, type, publicId); |
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Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
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|
2234 } |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
2235 |
1668
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reconstructing main dicom tags
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changeset
|
2236 |
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|
2237 unsigned int ServerIndex::GetDatabaseVersion() |
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changeset
|
2238 { |
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changeset
|
2239 boost::mutex::scoped_lock lock(mutex_); |
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diff
changeset
|
2240 return db_.GetDatabaseVersion(); |
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|
2241 } |
1750
55d52567bebb
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diff
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|
2242 |
55d52567bebb
LookupResource implemented
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diff
changeset
|
2243 |
1753 | 2244 void ServerIndex::FindCandidates(std::vector<std::string>& resources, |
2245 std::vector<std::string>& instances, | |
1757
98abb8d7f905
ServerContext::Apply lookup
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1754
diff
changeset
|
2246 const ::Orthanc::LookupResource& lookup) |
1750
55d52567bebb
LookupResource implemented
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diff
changeset
|
2247 { |
1753 | 2248 boost::mutex::scoped_lock lock(mutex_); |
2249 | |
2250 std::list<int64_t> tmp; | |
2251 lookup.FindCandidates(tmp, db_); | |
2252 | |
2253 resources.resize(tmp.size()); | |
2254 instances.resize(tmp.size()); | |
2255 | |
2256 size_t pos = 0; | |
2257 for (std::list<int64_t>::const_iterator | |
2258 it = tmp.begin(); it != tmp.end(); ++it, pos++) | |
2259 { | |
1754 | 2260 assert(db_.GetResourceType(*it) == lookup.GetLevel()); |
2261 | |
1753 | 2262 int64_t instance; |
2120 | 2263 if (!ServerToolbox::FindOneChildInstance(instance, db_, *it, lookup.GetLevel())) |
1753 | 2264 { |
2265 throw OrthancException(ErrorCode_InternalError); | |
2266 } | |
2267 | |
2268 resources[pos] = db_.GetPublicId(*it); | |
2269 instances[pos] = db_.GetPublicId(instance); | |
2270 } | |
1750
55d52567bebb
LookupResource implemented
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1747
diff
changeset
|
2271 } |
1898
e018037d4d0e
Support of optional tags for counting resources in C-Find
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parents:
1823
diff
changeset
|
2272 |
e018037d4d0e
Support of optional tags for counting resources in C-Find
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diff
changeset
|
2273 |
e018037d4d0e
Support of optional tags for counting resources in C-Find
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diff
changeset
|
2274 bool ServerIndex::LookupParent(std::string& target, |
e018037d4d0e
Support of optional tags for counting resources in C-Find
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parents:
1823
diff
changeset
|
2275 const std::string& publicId, |
e018037d4d0e
Support of optional tags for counting resources in C-Find
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parents:
1823
diff
changeset
|
2276 ResourceType parentType) |
e018037d4d0e
Support of optional tags for counting resources in C-Find
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1823
diff
changeset
|
2277 { |
e018037d4d0e
Support of optional tags for counting resources in C-Find
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parents:
1823
diff
changeset
|
2278 boost::mutex::scoped_lock lock(mutex_); |
e018037d4d0e
Support of optional tags for counting resources in C-Find
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diff
changeset
|
2279 |
e018037d4d0e
Support of optional tags for counting resources in C-Find
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parents:
1823
diff
changeset
|
2280 ResourceType type; |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
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|
2281 int64_t id; |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2282 if (!db_.LookupResource(id, type, publicId)) |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
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|
2283 { |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
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|
2284 throw OrthancException(ErrorCode_UnknownResource); |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
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|
2285 } |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2286 |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2287 while (type != parentType) |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
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|
2288 { |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
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|
2289 int64_t parentId; |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2290 |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
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|
2291 if (type == ResourceType_Patient || // Cannot further go up in hierarchy |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
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|
2292 !db_.LookupParent(parentId, id)) |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
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|
2293 { |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
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|
2294 return false; |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
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|
2295 } |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2296 |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2297 id = parentId; |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2298 type = GetParentResourceType(type); |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2299 } |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2300 |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2301 target = db_.GetPublicId(id); |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2302 return true; |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2303 } |
2209
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
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|
2304 |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2305 |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2306 void ServerIndex::ReconstructInstance(ParsedDicomFile& dicom) |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2307 { |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
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|
2308 DicomMap summary; |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2309 dicom.ExtractDicomSummary(summary); |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2310 |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2311 DicomInstanceHasher hasher(summary); |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2312 |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2313 boost::mutex::scoped_lock lock(mutex_); |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2314 |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2315 try |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2316 { |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2317 Transaction t(*this); |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2318 |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2319 int64_t patient = -1, study = -1, series = -1, instance = -1; |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2320 |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2321 ResourceType dummy; |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2322 if (!db_.LookupResource(patient, dummy, hasher.HashPatient()) || |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2323 !db_.LookupResource(study, dummy, hasher.HashStudy()) || |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2324 !db_.LookupResource(series, dummy, hasher.HashSeries()) || |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2325 !db_.LookupResource(instance, dummy, hasher.HashInstance()) || |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2326 patient == -1 || |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2327 study == -1 || |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2328 series == -1 || |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2329 instance == -1) |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2330 { |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2331 throw OrthancException(ErrorCode_InternalError); |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2332 } |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2333 |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2334 db_.ClearMainDicomTags(patient); |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2335 db_.ClearMainDicomTags(study); |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2336 db_.ClearMainDicomTags(series); |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2337 db_.ClearMainDicomTags(instance); |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2338 |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2339 ServerToolbox::StoreMainDicomTags(db_, patient, ResourceType_Patient, summary); |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2340 ServerToolbox::StoreMainDicomTags(db_, study, ResourceType_Study, summary); |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2341 ServerToolbox::StoreMainDicomTags(db_, series, ResourceType_Series, summary); |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2342 ServerToolbox::StoreMainDicomTags(db_, instance, ResourceType_Instance, summary); |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2343 |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2344 { |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2345 std::string s; |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2346 if (dicom.LookupTransferSyntax(s)) |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2347 { |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2348 db_.SetMetadata(instance, MetadataType_Instance_TransferSyntax, s); |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2349 } |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2350 } |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2351 |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2352 const DicomValue* value; |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2353 if ((value = summary.TestAndGetValue(DICOM_TAG_SOP_CLASS_UID)) != NULL && |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2354 !value->IsNull() && |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2355 !value->IsBinary()) |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2356 { |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2357 db_.SetMetadata(instance, MetadataType_Instance_SopClassUid, value->GetContent()); |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2358 } |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2359 |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2360 t.Commit(0); // No change in the DB size |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2361 } |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2362 catch (OrthancException& e) |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2363 { |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2364 LOG(ERROR) << "EXCEPTION [" << e.What() << "]"; |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2365 } |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2366 } |
0 | 2367 } |