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annotate OrthancFramework/Sources/DicomParsing/DicomModification.h @ 4596:2b64cc3cea99

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added OrthancPluginContentType_DicomUntilPixelData
author Alain Mazy <am@osimis.io>
date Wed, 17 Mar 2021 15:31:26 +0100
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children 521e39b3f2c0
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1 /**
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2 * Orthanc - A Lightweight, RESTful DICOM Store
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3 * Copyright (C) 2012-2016 Sebastien Jodogne, Medical Physics
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4 * Department, University Hospital of Liege, Belgium
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5 * Copyright (C) 2017-2021 Osimis S.A., Belgium
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6 *
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7 * This program is free software: you can redistribute it and/or
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8 * modify it under the terms of the GNU Lesser General Public License
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9 * as published by the Free Software Foundation, either version 3 of
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10 * the License, or (at your option) any later version.
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11 *
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12 * This program is distributed in the hope that it will be useful, but
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13 * WITHOUT ANY WARRANTY; without even the implied warranty of
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14 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
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15 * Lesser General Public License for more details.
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16 *
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17 * You should have received a copy of the GNU Lesser General Public
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18 * License along with this program. If not, see
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19 * <http://www.gnu.org/licenses/>.
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20 **/
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21
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22
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23 #pragma once
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24
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25 #include "ParsedDicomFile.h"
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26
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27 namespace Orthanc
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28 {
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29 class ORTHANC_PUBLIC DicomModification : public boost::noncopyable
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30 {
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31 /**
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32 * Process:
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33 * (1) Remove private tags
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34 * (2) Remove tags specified by the user
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35 * (3) Replace tags
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36 **/
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37
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38 public:
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39 enum TagOperation
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40 {
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41 TagOperation_Keep,
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42 TagOperation_Remove
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43 };
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44
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45 class IDicomIdentifierGenerator : public boost::noncopyable
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46 {
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47 public:
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48 virtual ~IDicomIdentifierGenerator()
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49 {
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50 }
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51
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52 virtual bool Apply(std::string& target,
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53 const std::string& sourceIdentifier,
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54 ResourceType level,
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55 const DicomMap& sourceDicom) = 0;
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56 };
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57
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58 private:
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59 class RelationshipsVisitor;
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60
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61 typedef std::set<DicomTag> SetOfTags;
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62 typedef std::map<DicomTag, Json::Value*> Replacements;
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63 typedef std::map< std::pair<ResourceType, std::string>, std::string> UidMap;
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64
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65 SetOfTags removals_;
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66 SetOfTags clearings_;
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67 Replacements replacements_;
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68 bool removePrivateTags_;
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69 ResourceType level_;
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70 UidMap uidMap_;
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71 SetOfTags privateTagsToKeep_;
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72 bool allowManualIdentifiers_;
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73 bool keepStudyInstanceUid_;
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74 bool keepSeriesInstanceUid_;
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75 bool keepSopInstanceUid_;
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76 bool updateReferencedRelationships_;
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77 bool isAnonymization_;
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78 DicomMap currentSource_;
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79 std::string privateCreator_;
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80
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81 IDicomIdentifierGenerator* identifierGenerator_;
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82
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83 std::string MapDicomIdentifier(const std::string& original,
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84 ResourceType level);
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85
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86 void RegisterMappedDicomIdentifier(const std::string& original,
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87 const std::string& mapped,
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88 ResourceType level);
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89
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90 void MapDicomTags(ParsedDicomFile& dicom,
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91 ResourceType level);
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92
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93 void MarkNotOrthancAnonymization();
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94
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95 void ClearReplacements();
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96
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97 bool CancelReplacement(const DicomTag& tag);
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98
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99 void ReplaceInternal(const DicomTag& tag,
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100 const Json::Value& value);
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101
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102 void SetupAnonymization2008();
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103
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104 void SetupAnonymization2017c();
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105
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106 void UnserializeUidMap(ResourceType level,
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107 const Json::Value& serialized,
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108 const char* field);
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109
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110 public:
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111 DicomModification();
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112
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113 explicit DicomModification(const Json::Value& serialized);
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114
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115 ~DicomModification();
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116
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117 void Keep(const DicomTag& tag);
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118
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119 void Remove(const DicomTag& tag);
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120
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121 // Replace the DICOM tag as a NULL/empty value (e.g. for anonymization)
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122 void Clear(const DicomTag& tag);
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123
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124 bool IsRemoved(const DicomTag& tag) const;
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125
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126 bool IsCleared(const DicomTag& tag) const;
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127
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128 // "safeForAnonymization" tells Orthanc that this replacement does
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129 // not break the anonymization process it implements (for internal use only)
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130 void Replace(const DicomTag& tag,
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131 const Json::Value& value, // Encoded using UTF-8
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132 bool safeForAnonymization);
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133
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134 bool IsReplaced(const DicomTag& tag) const;
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135
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136 const Json::Value& GetReplacement(const DicomTag& tag) const;
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137
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138 std::string GetReplacementAsString(const DicomTag& tag) const;
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139
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140 void SetRemovePrivateTags(bool removed);
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141
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142 bool ArePrivateTagsRemoved() const;
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143
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144 void SetLevel(ResourceType level);
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145
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146 ResourceType GetLevel() const;
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147
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148 void SetupAnonymization(DicomVersion version);
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149
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150 void Apply(ParsedDicomFile& toModify);
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151
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152 void SetAllowManualIdentifiers(bool check);
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153
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154 bool AreAllowManualIdentifiers() const;
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155
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156 void ParseModifyRequest(const Json::Value& request);
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157
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158 void ParseAnonymizationRequest(bool& patientNameReplaced,
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159 const Json::Value& request);
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160
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161 void SetDicomIdentifierGenerator(IDicomIdentifierGenerator& generator);
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162
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163 void Serialize(Json::Value& value) const;
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164
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165 void SetPrivateCreator(const std::string& privateCreator);
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166
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167 const std::string& GetPrivateCreator() const;
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168 };
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169 }