Mercurial > hg > orthanc
annotate OrthancServer/Sources/ServerContext.cpp @ 4307:2a9d304b3a82
fix build of Orthanc framework DLL for Windows
author | Sebastien Jodogne <s.jodogne@gmail.com> |
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date | Fri, 06 Nov 2020 21:13:45 +0100 |
parents | 09ed936fd381 |
children | 208029732d51 |
rev | line source |
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224 | 1 /** |
2 * Orthanc - A Lightweight, RESTful DICOM Store | |
1900 | 3 * Copyright (C) 2012-2016 Sebastien Jodogne, Medical Physics |
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4 * Department, University Hospital of Liege, Belgium |
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5 * Copyright (C) 2017-2020 Osimis S.A., Belgium |
224 | 6 * |
7 * This program is free software: you can redistribute it and/or | |
8 * modify it under the terms of the GNU General Public License as | |
9 * published by the Free Software Foundation, either version 3 of the | |
10 * License, or (at your option) any later version. | |
11 * | |
12 * In addition, as a special exception, the copyright holders of this | |
13 * program give permission to link the code of its release with the | |
14 * OpenSSL project's "OpenSSL" library (or with modified versions of it | |
15 * that use the same license as the "OpenSSL" library), and distribute | |
16 * the linked executables. You must obey the GNU General Public License | |
17 * in all respects for all of the code used other than "OpenSSL". If you | |
18 * modify file(s) with this exception, you may extend this exception to | |
19 * your version of the file(s), but you are not obligated to do so. If | |
20 * you do not wish to do so, delete this exception statement from your | |
21 * version. If you delete this exception statement from all source files | |
22 * in the program, then also delete it here. | |
23 * | |
24 * This program is distributed in the hope that it will be useful, but | |
25 * WITHOUT ANY WARRANTY; without even the implied warranty of | |
26 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU | |
27 * General Public License for more details. | |
28 * | |
29 * You should have received a copy of the GNU General Public License | |
30 * along with this program. If not, see <http://www.gnu.org/licenses/>. | |
31 **/ | |
32 | |
33 | |
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34 #include "PrecompiledHeadersServer.h" |
224 | 35 #include "ServerContext.h" |
36 | |
4045 | 37 #include "../../OrthancFramework/Sources/Cache/SharedArchive.h" |
38 #include "../../OrthancFramework/Sources/DicomParsing/DcmtkTranscoder.h" | |
39 #include "../../OrthancFramework/Sources/DicomParsing/FromDcmtkBridge.h" | |
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40 #include "../../OrthancFramework/Sources/DicomParsing/Internals/DicomImageDecoder.h" |
4045 | 41 #include "../../OrthancFramework/Sources/FileStorage/StorageAccessor.h" |
42 #include "../../OrthancFramework/Sources/HttpServer/FilesystemHttpSender.h" | |
43 #include "../../OrthancFramework/Sources/HttpServer/HttpStreamTranscoder.h" | |
44 #include "../../OrthancFramework/Sources/JobsEngine/SetOfInstancesJob.h" | |
45 #include "../../OrthancFramework/Sources/Logging.h" | |
46 #include "../../OrthancFramework/Sources/MetricsRegistry.h" | |
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47 #include "../Plugins/Engine/OrthancPlugins.h" |
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48 |
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49 #include "OrthancConfiguration.h" |
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50 #include "OrthancRestApi/OrthancRestApi.h" |
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51 #include "Search/DatabaseLookup.h" |
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52 #include "ServerJobs/OrthancJobUnserializer.h" |
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53 #include "ServerToolbox.h" |
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54 #include "StorageCommitmentReports.h" |
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55 |
794 | 56 #include <dcmtk/dcmdata/dcfilefo.h> |
224 | 57 |
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58 |
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59 |
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60 #define ENABLE_DICOM_CACHE 1 |
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61 |
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62 static const size_t DICOM_CACHE_SIZE = 2; |
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63 |
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64 /** |
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65 * IMPORTANT: We make the assumption that the same instance of |
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66 * FileStorage can be accessed from multiple threads. This seems OK |
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67 * since the filesystem implements the required locking mechanisms, |
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68 * but maybe a read-writer lock on the "FileStorage" could be |
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69 * useful. Conversely, "ServerIndex" already implements mutex-based |
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70 * locking. |
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71 **/ |
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72 |
224 | 73 namespace Orthanc |
74 { | |
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75 void ServerContext::ChangeThread(ServerContext* that, |
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76 unsigned int sleepDelay) |
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77 { |
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78 while (!that->done_) |
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79 { |
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80 std::unique_ptr<IDynamicObject> obj(that->pendingChanges_.Dequeue(sleepDelay)); |
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81 |
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82 if (obj.get() != NULL) |
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83 { |
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84 const ServerIndexChange& change = dynamic_cast<const ServerIndexChange&>(*obj.get()); |
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85 |
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86 boost::shared_lock<boost::shared_mutex> lock(that->listenersMutex_); |
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87 for (ServerListeners::iterator it = that->listeners_.begin(); |
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88 it != that->listeners_.end(); ++it) |
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89 { |
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90 try |
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91 { |
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92 try |
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93 { |
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94 it->GetListener().SignalChange(change); |
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95 } |
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96 catch (std::bad_alloc&) |
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97 { |
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98 LOG(ERROR) << "Not enough memory while signaling a change"; |
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99 } |
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100 catch (...) |
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101 { |
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102 throw OrthancException(ErrorCode_InternalError); |
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103 } |
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104 } |
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105 catch (OrthancException& e) |
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106 { |
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107 LOG(ERROR) << "Error in the " << it->GetDescription() |
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108 << " callback while signaling a change: " << e.What() |
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109 << " (code " << e.GetErrorCode() << ")"; |
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110 } |
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111 } |
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112 } |
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113 } |
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114 } |
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115 |
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116 |
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117 void ServerContext::SaveJobsThread(ServerContext* that, |
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118 unsigned int sleepDelay) |
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119 { |
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120 static const boost::posix_time::time_duration PERIODICITY = |
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121 boost::posix_time::seconds(10); |
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122 |
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123 boost::posix_time::ptime next = |
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124 boost::posix_time::microsec_clock::universal_time() + PERIODICITY; |
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125 |
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126 while (!that->done_) |
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127 { |
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128 boost::this_thread::sleep(boost::posix_time::milliseconds(sleepDelay)); |
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129 |
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130 if (that->haveJobsChanged_ || |
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131 boost::posix_time::microsec_clock::universal_time() >= next) |
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132 { |
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133 that->haveJobsChanged_ = false; |
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134 that->SaveJobsEngine(); |
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135 next = boost::posix_time::microsec_clock::universal_time() + PERIODICITY; |
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136 } |
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137 } |
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138 } |
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139 |
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140 |
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141 void ServerContext::SignalJobSubmitted(const std::string& jobId) |
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142 { |
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143 haveJobsChanged_ = true; |
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144 mainLua_.SignalJobSubmitted(jobId); |
4129 | 145 |
146 #if ORTHANC_ENABLE_PLUGINS == 1 | |
147 if (HasPlugins()) | |
148 { | |
149 GetPlugins().SignalJobSubmitted(jobId); | |
150 } | |
151 #endif | |
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152 } |
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153 |
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154 |
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155 void ServerContext::SignalJobSuccess(const std::string& jobId) |
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156 { |
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157 haveJobsChanged_ = true; |
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158 mainLua_.SignalJobSuccess(jobId); |
4129 | 159 |
160 #if ORTHANC_ENABLE_PLUGINS == 1 | |
161 if (HasPlugins()) | |
162 { | |
163 GetPlugins().SignalJobSuccess(jobId); | |
164 } | |
165 #endif | |
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166 } |
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167 |
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168 |
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169 void ServerContext::SignalJobFailure(const std::string& jobId) |
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170 { |
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171 haveJobsChanged_ = true; |
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172 mainLua_.SignalJobFailure(jobId); |
4129 | 173 |
174 #if ORTHANC_ENABLE_PLUGINS == 1 | |
175 if (HasPlugins()) | |
176 { | |
177 GetPlugins().SignalJobFailure(jobId); | |
178 } | |
179 #endif | |
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180 } |
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181 |
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182 |
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183 void ServerContext::SetupJobsEngine(bool unitTesting, |
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184 bool loadJobsFromDatabase) |
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185 { |
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186 if (loadJobsFromDatabase) |
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187 { |
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188 std::string serialized; |
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189 if (index_.LookupGlobalProperty(serialized, GlobalProperty_JobsRegistry)) |
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190 { |
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191 LOG(WARNING) << "Reloading the jobs from the last execution of Orthanc"; |
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192 |
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193 try |
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194 { |
4205 | 195 OrthancJobUnserializer unserializer(*this); |
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196 jobsEngine_.LoadRegistryFromString(unserializer, serialized); |
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197 } |
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198 catch (OrthancException& e) |
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199 { |
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200 LOG(WARNING) << "Cannot unserialize the jobs engine, starting anyway: " << e.What(); |
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201 } |
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202 } |
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203 else |
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204 { |
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205 LOG(INFO) << "The last execution of Orthanc has archived no job"; |
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206 } |
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207 } |
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208 else |
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209 { |
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210 LOG(INFO) << "Not reloading the jobs from the last execution of Orthanc"; |
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211 } |
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212 |
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213 jobsEngine_.GetRegistry().SetObserver(*this); |
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214 jobsEngine_.Start(); |
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215 isJobsEngineUnserialized_ = true; |
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216 |
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217 saveJobsThread_ = boost::thread(SaveJobsThread, this, (unitTesting ? 20 : 100)); |
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218 } |
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219 |
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220 |
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221 void ServerContext::SaveJobsEngine() |
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222 { |
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223 if (saveJobs_) |
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224 { |
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225 LOG(TRACE) << "Serializing the content of the jobs engine"; |
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226 |
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227 try |
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228 { |
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229 Json::Value value; |
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230 jobsEngine_.GetRegistry().Serialize(value); |
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231 |
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232 Json::FastWriter writer; |
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233 std::string serialized = writer.write(value); |
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234 |
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235 index_.SetGlobalProperty(GlobalProperty_JobsRegistry, serialized); |
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236 } |
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237 catch (OrthancException& e) |
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238 { |
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239 LOG(ERROR) << "Cannot serialize the jobs engine: " << e.What(); |
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240 } |
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241 } |
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242 } |
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243 |
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244 |
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245 ServerContext::ServerContext(IDatabaseWrapper& database, |
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246 IStorageArea& area, |
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247 bool unitTesting, |
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248 size_t maxCompletedJobs) : |
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249 index_(*this, database, (unitTesting ? 20 : 500)), |
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250 area_(area), |
656 | 251 compressionEnabled_(false), |
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252 storeMD5_(true), |
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253 provider_(*this), |
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254 dicomCache_(provider_, DICOM_CACHE_SIZE), |
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255 mainLua_(*this), |
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256 filterLua_(*this), |
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257 luaListener_(*this), |
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258 jobsEngine_(maxCompletedJobs), |
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259 #if ORTHANC_ENABLE_PLUGINS == 1 |
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260 plugins_(NULL), |
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261 #endif |
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262 done_(false), |
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263 haveJobsChanged_(false), |
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264 isJobsEngineUnserialized_(false), |
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265 metricsRegistry_(new MetricsRegistry), |
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266 isHttpServerSecure_(true), |
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moving SetOverwriteInstances from ServerIndex to ServerContext
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267 isExecuteLuaEnabled_(false), |
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268 overwriteInstances_(false), |
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269 dcmtkTranscoder_(new DcmtkTranscoder), |
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270 isIngestTranscoding_(false) |
224 | 271 { |
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272 try |
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273 { |
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274 unsigned int lossyQuality; |
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275 |
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276 { |
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277 OrthancConfiguration::ReaderLock lock; |
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278 |
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279 queryRetrieveArchive_.reset( |
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280 new SharedArchive(lock.GetConfiguration().GetUnsignedIntegerParameter("QueryRetrieveSize", 100))); |
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281 mediaArchive_.reset( |
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282 new SharedArchive(lock.GetConfiguration().GetUnsignedIntegerParameter("MediaArchiveSize", 1))); |
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283 defaultLocalAet_ = lock.GetConfiguration().GetOrthancAET(); |
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284 jobsEngine_.SetWorkersCount(lock.GetConfiguration().GetUnsignedIntegerParameter("ConcurrentJobs", 2)); |
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285 saveJobs_ = lock.GetConfiguration().GetBooleanParameter("SaveJobs", true); |
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286 metricsRegistry_->SetEnabled(lock.GetConfiguration().GetBooleanParameter("MetricsEnabled", true)); |
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287 |
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288 // New configuration options in Orthanc 1.5.1 |
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289 findStorageAccessMode_ = StringToFindStorageAccessMode(lock.GetConfiguration().GetStringParameter("StorageAccessOnFind", "Always")); |
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290 limitFindInstances_ = lock.GetConfiguration().GetUnsignedIntegerParameter("LimitFindInstances", 0); |
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291 limitFindResults_ = lock.GetConfiguration().GetUnsignedIntegerParameter("LimitFindResults", 0); |
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292 |
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293 // New configuration option in Orthanc 1.6.0 |
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294 storageCommitmentReports_.reset(new StorageCommitmentReports(lock.GetConfiguration().GetUnsignedIntegerParameter("StorageCommitmentReportsSize", 100))); |
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295 |
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296 // New options in Orthanc 1.7.0 |
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297 transcodeDicomProtocol_ = lock.GetConfiguration().GetBooleanParameter("TranscodeDicomProtocol", true); |
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298 builtinDecoderTranscoderOrder_ = StringToBuiltinDecoderTranscoderOrder(lock.GetConfiguration().GetStringParameter("BuiltinDecoderTranscoderOrder", "After")); |
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299 lossyQuality = lock.GetConfiguration().GetUnsignedIntegerParameter("DicomLossyTranscodingQuality", 90); |
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300 |
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301 std::string s; |
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302 if (lock.GetConfiguration().LookupStringParameter(s, "IngestTranscoding")) |
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303 { |
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304 if (LookupTransferSyntax(ingestTransferSyntax_, s)) |
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305 { |
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306 isIngestTranscoding_ = true; |
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307 LOG(WARNING) << "Incoming DICOM instances will automatically be transcoded to " |
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308 << "transfer syntax: " << GetTransferSyntaxUid(ingestTransferSyntax_); |
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309 } |
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310 else |
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311 { |
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312 throw OrthancException(ErrorCode_ParameterOutOfRange, |
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313 "Unknown transfer syntax for ingest transcoding: " + s); |
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314 } |
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315 } |
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316 else |
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317 { |
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318 isIngestTranscoding_ = false; |
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319 LOG(INFO) << "Automated transcoding of incoming DICOM instances is disabled"; |
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320 } |
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321 } |
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322 |
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323 jobsEngine_.SetThreadSleep(unitTesting ? 20 : 200); |
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324 |
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325 listeners_.push_back(ServerListener(luaListener_, "Lua")); |
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326 changeThread_ = boost::thread(ChangeThread, this, (unitTesting ? 20 : 100)); |
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327 |
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328 dynamic_cast<DcmtkTranscoder&>(*dcmtkTranscoder_).SetLossyQuality(lossyQuality); |
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329 } |
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330 catch (OrthancException&) |
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331 { |
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332 Stop(); |
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333 throw; |
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334 } |
224 | 335 } |
336 | |
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337 |
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338 |
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339 ServerContext::~ServerContext() |
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340 { |
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341 if (!done_) |
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342 { |
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343 LOG(ERROR) << "INTERNAL ERROR: ServerContext::Stop() should be invoked manually to avoid mess in the destruction order!"; |
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344 Stop(); |
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345 } |
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346 } |
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347 |
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348 |
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349 void ServerContext::Stop() |
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350 { |
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351 if (!done_) |
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352 { |
1459 | 353 { |
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354 boost::unique_lock<boost::shared_mutex> lock(listenersMutex_); |
1459 | 355 listeners_.clear(); |
356 } | |
357 | |
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358 done_ = true; |
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359 |
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360 if (changeThread_.joinable()) |
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361 { |
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362 changeThread_.join(); |
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363 } |
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364 |
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365 if (saveJobsThread_.joinable()) |
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366 { |
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367 saveJobsThread_.join(); |
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368 } |
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369 |
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370 jobsEngine_.GetRegistry().ResetObserver(); |
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371 |
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372 if (isJobsEngineUnserialized_) |
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373 { |
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374 // Avoid losing jobs if the JobsRegistry cannot be unserialized |
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375 SaveJobsEngine(); |
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376 } |
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377 |
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378 // Do not change the order below! |
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379 jobsEngine_.Stop(); |
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380 index_.Stop(); |
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381 } |
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382 } |
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383 |
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384 |
236 | 385 void ServerContext::SetCompressionEnabled(bool enabled) |
386 { | |
387 if (enabled) | |
388 LOG(WARNING) << "Disk compression is enabled"; | |
389 else | |
390 LOG(WARNING) << "Disk compression is disabled"; | |
391 | |
392 compressionEnabled_ = enabled; | |
393 } | |
394 | |
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395 |
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396 void ServerContext::RemoveFile(const std::string& fileUuid, |
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397 FileContentType type) |
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398 { |
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399 StorageAccessor accessor(area_, GetMetricsRegistry()); |
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400 accessor.Remove(fileUuid, type); |
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401 } |
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402 |
996
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403 |
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404 StoreStatus ServerContext::StoreAfterTranscoding(std::string& resultPublicId, |
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405 DicomInstanceToStore& dicom, |
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406 StoreInstanceMode mode) |
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407 { |
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408 bool overwrite; |
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409 switch (mode) |
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410 { |
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411 case StoreInstanceMode_Default: |
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412 overwrite = overwriteInstances_; |
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413 break; |
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414 |
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415 case StoreInstanceMode_OverwriteDuplicate: |
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416 overwrite = true; |
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417 break; |
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418 |
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419 case StoreInstanceMode_IgnoreDuplicate: |
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420 overwrite = false; |
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421 break; |
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422 |
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423 default: |
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424 throw OrthancException(ErrorCode_ParameterOutOfRange); |
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425 } |
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426 |
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427 try |
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428 { |
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429 MetricsRegistry::Timer timer(GetMetricsRegistry(), "orthanc_store_dicom_duration_ms"); |
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430 StorageAccessor accessor(area_, GetMetricsRegistry()); |
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431 |
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432 resultPublicId = dicom.GetHasher().HashInstance(); |
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433 |
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434 Json::Value simplifiedTags; |
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435 Toolbox::SimplifyDicomAsJson(simplifiedTags, dicom.GetJson(), DicomToJsonFormat_Human); |
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436 |
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437 // Test if the instance must be filtered out |
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438 bool accepted = true; |
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439 |
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440 { |
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441 boost::shared_lock<boost::shared_mutex> lock(listenersMutex_); |
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442 |
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443 for (ServerListeners::iterator it = listeners_.begin(); it != listeners_.end(); ++it) |
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444 { |
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445 try |
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446 { |
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447 if (!it->GetListener().FilterIncomingInstance(dicom, simplifiedTags)) |
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448 { |
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449 accepted = false; |
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450 break; |
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451 } |
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452 } |
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453 catch (OrthancException& e) |
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454 { |
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455 LOG(ERROR) << "Error in the " << it->GetDescription() |
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456 << " callback while receiving an instance: " << e.What() |
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457 << " (code " << e.GetErrorCode() << ")"; |
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458 throw; |
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459 } |
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460 } |
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461 } |
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462 |
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463 if (!accepted) |
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464 { |
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465 LOG(INFO) << "An incoming instance has been discarded by the filter"; |
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466 return StoreStatus_FilteredOut; |
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467 } |
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468 |
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New configuration option "OverwriteInstances" to choose how duplicate SOPInstanceUID are handled
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469 { |
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470 // Remove the file from the DicomCache (useful if |
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471 // "OverwriteInstances" is set to "true") |
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472 boost::mutex::scoped_lock lock(dicomCacheMutex_); |
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|
473 dicomCache_.Invalidate(resultPublicId); |
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474 } |
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New configuration option "OverwriteInstances" to choose how duplicate SOPInstanceUID are handled
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475 |
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476 // TODO Should we use "gzip" instead? |
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|
477 CompressionType compression = (compressionEnabled_ ? CompressionType_ZlibWithSize : CompressionType_None); |
1004
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|
478 |
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479 FileInfo dicomInfo = accessor.Write(dicom.GetBufferData(), dicom.GetBufferSize(), |
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480 FileContentType_Dicom, compression, storeMD5_); |
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481 FileInfo jsonInfo = accessor.Write(dicom.GetJson().toStyledString(), |
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|
482 FileContentType_DicomAsJson, compression, storeMD5_); |
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|
483 |
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|
484 ServerIndex::Attachments attachments; |
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DicomInstanceToStore
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|
485 attachments.push_back(dicomInfo); |
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|
486 attachments.push_back(jsonInfo); |
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|
487 |
1067
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access metadata in plugins
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|
488 typedef std::map<MetadataType, std::string> InstanceMetadata; |
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|
489 InstanceMetadata instanceMetadata; |
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moving SetOverwriteInstances from ServerIndex to ServerContext
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|
490 StoreStatus status = index_.Store( |
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|
491 instanceMetadata, dicom, attachments, overwrite); |
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|
492 |
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493 // Only keep the metadata for the "instance" level |
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494 dicom.GetMetadata().clear(); |
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|
495 |
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496 for (InstanceMetadata::const_iterator it = instanceMetadata.begin(); |
1304 | 497 it != instanceMetadata.end(); ++it) |
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|
498 { |
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499 dicom.GetMetadata().insert(std::make_pair(std::make_pair(ResourceType_Instance, it->first), |
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|
500 it->second)); |
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|
501 } |
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|
502 |
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|
503 if (status != StoreStatus_Success) |
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|
504 { |
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505 accessor.Remove(dicomInfo); |
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|
506 accessor.Remove(jsonInfo); |
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|
507 } |
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|
508 |
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|
509 switch (status) |
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|
510 { |
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|
511 case StoreStatus_Success: |
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|
512 LOG(INFO) << "New instance stored"; |
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|
513 break; |
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|
514 |
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|
515 case StoreStatus_AlreadyStored: |
a226e0959d8b
DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1002
diff
changeset
|
516 LOG(INFO) << "Already stored"; |
a226e0959d8b
DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1002
diff
changeset
|
517 break; |
a226e0959d8b
DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1002
diff
changeset
|
518 |
a226e0959d8b
DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1002
diff
changeset
|
519 case StoreStatus_Failure: |
a226e0959d8b
DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1002
diff
changeset
|
520 LOG(ERROR) << "Store failure"; |
a226e0959d8b
DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1002
diff
changeset
|
521 break; |
a226e0959d8b
DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1002
diff
changeset
|
522 |
a226e0959d8b
DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1002
diff
changeset
|
523 default: |
a226e0959d8b
DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1002
diff
changeset
|
524 // This should never happen |
a226e0959d8b
DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1002
diff
changeset
|
525 break; |
a226e0959d8b
DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1002
diff
changeset
|
526 } |
a226e0959d8b
DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1002
diff
changeset
|
527 |
a226e0959d8b
DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1002
diff
changeset
|
528 if (status == StoreStatus_Success || |
a226e0959d8b
DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1002
diff
changeset
|
529 status == StoreStatus_AlreadyStored) |
a226e0959d8b
DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1002
diff
changeset
|
530 { |
3947
cf6eb4fc6841
fix issue 179: use a shared mutex to avoid deadlock in python plugins
Alain Mazy <alain@mazy.be>
parents:
3945
diff
changeset
|
531 boost::shared_lock<boost::shared_mutex> lock(listenersMutex_); |
1453
c0bdc47165ef
code to warn about possible threading problems
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1447
diff
changeset
|
532 |
1433
461e7554bff7
refactoring: LuaScripting
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1427
diff
changeset
|
533 for (ServerListeners::iterator it = listeners_.begin(); it != listeners_.end(); ++it) |
1066
bb82e5e818e9
OnStoredInstance callback in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1065
diff
changeset
|
534 { |
bb82e5e818e9
OnStoredInstance callback in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1065
diff
changeset
|
535 try |
bb82e5e818e9
OnStoredInstance callback in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1065
diff
changeset
|
536 { |
1574
0c29ebe80ac9
give access to full request origin in ReceivedInstanceFilter (Lua)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1550
diff
changeset
|
537 it->GetListener().SignalStoredInstance(resultPublicId, dicom, simplifiedTags); |
1066
bb82e5e818e9
OnStoredInstance callback in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1065
diff
changeset
|
538 } |
bb82e5e818e9
OnStoredInstance callback in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1065
diff
changeset
|
539 catch (OrthancException& e) |
bb82e5e818e9
OnStoredInstance callback in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1065
diff
changeset
|
540 { |
1433
461e7554bff7
refactoring: LuaScripting
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1427
diff
changeset
|
541 LOG(ERROR) << "Error in the " << it->GetDescription() |
2135
cadfe0a2a393
fix in the sample basic plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2134
diff
changeset
|
542 << " callback while receiving an instance: " << e.What() |
cadfe0a2a393
fix in the sample basic plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2134
diff
changeset
|
543 << " (code " << e.GetErrorCode() << ")"; |
1066
bb82e5e818e9
OnStoredInstance callback in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1065
diff
changeset
|
544 } |
bb82e5e818e9
OnStoredInstance callback in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1065
diff
changeset
|
545 } |
1004
a226e0959d8b
DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1002
diff
changeset
|
546 } |
a226e0959d8b
DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1002
diff
changeset
|
547 |
a226e0959d8b
DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1002
diff
changeset
|
548 return status; |
a226e0959d8b
DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1002
diff
changeset
|
549 } |
a226e0959d8b
DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1002
diff
changeset
|
550 catch (OrthancException& e) |
a226e0959d8b
DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1002
diff
changeset
|
551 { |
a226e0959d8b
DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1002
diff
changeset
|
552 if (e.GetErrorCode() == ErrorCode_InexistentTag) |
a226e0959d8b
DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1002
diff
changeset
|
553 { |
2380
96b3ec054b69
reorganization in macros
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2304
diff
changeset
|
554 dicom.GetSummary().LogMissingTagsForStore(); |
1004
a226e0959d8b
DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1002
diff
changeset
|
555 } |
a226e0959d8b
DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1002
diff
changeset
|
556 |
a226e0959d8b
DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1002
diff
changeset
|
557 throw; |
a226e0959d8b
DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1002
diff
changeset
|
558 } |
a226e0959d8b
DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1002
diff
changeset
|
559 } |
a226e0959d8b
DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1002
diff
changeset
|
560 |
a226e0959d8b
DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1002
diff
changeset
|
561 |
3912
7610af1532c3
prototyping automated transcoding of incoming DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3911
diff
changeset
|
562 StoreStatus ServerContext::Store(std::string& resultPublicId, |
7610af1532c3
prototyping automated transcoding of incoming DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3911
diff
changeset
|
563 DicomInstanceToStore& dicom, |
7610af1532c3
prototyping automated transcoding of incoming DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3911
diff
changeset
|
564 StoreInstanceMode mode) |
7610af1532c3
prototyping automated transcoding of incoming DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3911
diff
changeset
|
565 { |
3939
c205f670098e
new configuration options: BuiltinDecoderTranscoderOrder and IngestTranscoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3938
diff
changeset
|
566 if (!isIngestTranscoding_) |
3912
7610af1532c3
prototyping automated transcoding of incoming DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3911
diff
changeset
|
567 { |
3941
771dbd9eb3bd
class CleaningInstancesJob to share cleaning code by merge/split jobs
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3939
diff
changeset
|
568 // No automated transcoding. This was the only path in Orthanc <= 1.6.1. |
3912
7610af1532c3
prototyping automated transcoding of incoming DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3911
diff
changeset
|
569 return StoreAfterTranscoding(resultPublicId, dicom, mode); |
7610af1532c3
prototyping automated transcoding of incoming DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3911
diff
changeset
|
570 } |
7610af1532c3
prototyping automated transcoding of incoming DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3911
diff
changeset
|
571 else |
7610af1532c3
prototyping automated transcoding of incoming DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3911
diff
changeset
|
572 { |
3939
c205f670098e
new configuration options: BuiltinDecoderTranscoderOrder and IngestTranscoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3938
diff
changeset
|
573 // Automated transcoding of incoming DICOM files |
3945
0b3256c3ee14
simplified IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3944
diff
changeset
|
574 |
3912
7610af1532c3
prototyping automated transcoding of incoming DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3911
diff
changeset
|
575 DicomTransferSyntax sourceSyntax; |
7610af1532c3
prototyping automated transcoding of incoming DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3911
diff
changeset
|
576 if (!FromDcmtkBridge::LookupOrthancTransferSyntax( |
7610af1532c3
prototyping automated transcoding of incoming DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3911
diff
changeset
|
577 sourceSyntax, dicom.GetParsedDicomFile().GetDcmtkObject()) || |
3939
c205f670098e
new configuration options: BuiltinDecoderTranscoderOrder and IngestTranscoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3938
diff
changeset
|
578 sourceSyntax == ingestTransferSyntax_) |
3912
7610af1532c3
prototyping automated transcoding of incoming DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3911
diff
changeset
|
579 { |
7610af1532c3
prototyping automated transcoding of incoming DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3911
diff
changeset
|
580 // No transcoding |
7610af1532c3
prototyping automated transcoding of incoming DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3911
diff
changeset
|
581 return StoreAfterTranscoding(resultPublicId, dicom, mode); |
7610af1532c3
prototyping automated transcoding of incoming DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3911
diff
changeset
|
582 } |
7610af1532c3
prototyping automated transcoding of incoming DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3911
diff
changeset
|
583 else |
7610af1532c3
prototyping automated transcoding of incoming DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3911
diff
changeset
|
584 { |
7610af1532c3
prototyping automated transcoding of incoming DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3911
diff
changeset
|
585 std::set<DicomTransferSyntax> syntaxes; |
3939
c205f670098e
new configuration options: BuiltinDecoderTranscoderOrder and IngestTranscoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3938
diff
changeset
|
586 syntaxes.insert(ingestTransferSyntax_); |
3912
7610af1532c3
prototyping automated transcoding of incoming DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3911
diff
changeset
|
587 |
3945
0b3256c3ee14
simplified IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3944
diff
changeset
|
588 IDicomTranscoder::DicomImage source; |
0b3256c3ee14
simplified IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3944
diff
changeset
|
589 source.SetExternalBuffer(dicom.GetBufferData(), dicom.GetBufferSize()); |
0b3256c3ee14
simplified IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3944
diff
changeset
|
590 |
0b3256c3ee14
simplified IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3944
diff
changeset
|
591 IDicomTranscoder::DicomImage transcoded; |
3951
5fe8c6d3212e
removed useless information "hasSopInstanceUidChanged"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3947
diff
changeset
|
592 if (Transcode(transcoded, source, syntaxes, true /* allow new SOP instance UID */)) |
3912
7610af1532c3
prototyping automated transcoding of incoming DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3911
diff
changeset
|
593 { |
3945
0b3256c3ee14
simplified IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3944
diff
changeset
|
594 std::unique_ptr<ParsedDicomFile> tmp(transcoded.ReleaseAsParsedDicomFile()); |
0b3256c3ee14
simplified IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3944
diff
changeset
|
595 |
3912
7610af1532c3
prototyping automated transcoding of incoming DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3911
diff
changeset
|
596 DicomInstanceToStore toStore; |
7610af1532c3
prototyping automated transcoding of incoming DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3911
diff
changeset
|
597 toStore.SetParsedDicomFile(*tmp); |
7610af1532c3
prototyping automated transcoding of incoming DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3911
diff
changeset
|
598 toStore.SetOrigin(dicom.GetOrigin()); |
7610af1532c3
prototyping automated transcoding of incoming DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3911
diff
changeset
|
599 |
7610af1532c3
prototyping automated transcoding of incoming DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3911
diff
changeset
|
600 StoreStatus ok = StoreAfterTranscoding(resultPublicId, toStore, mode); |
3938 | 601 assert(resultPublicId == tmp->GetHasher().HashInstance()); |
602 | |
3912
7610af1532c3
prototyping automated transcoding of incoming DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3911
diff
changeset
|
603 return ok; |
7610af1532c3
prototyping automated transcoding of incoming DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3911
diff
changeset
|
604 } |
3945
0b3256c3ee14
simplified IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3944
diff
changeset
|
605 else |
0b3256c3ee14
simplified IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3944
diff
changeset
|
606 { |
0b3256c3ee14
simplified IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3944
diff
changeset
|
607 // Cannot transcode => store the original file |
0b3256c3ee14
simplified IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3944
diff
changeset
|
608 return StoreAfterTranscoding(resultPublicId, dicom, mode); |
0b3256c3ee14
simplified IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3944
diff
changeset
|
609 } |
3912
7610af1532c3
prototyping automated transcoding of incoming DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3911
diff
changeset
|
610 } |
7610af1532c3
prototyping automated transcoding of incoming DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3911
diff
changeset
|
611 } |
7610af1532c3
prototyping automated transcoding of incoming DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3911
diff
changeset
|
612 } |
7610af1532c3
prototyping automated transcoding of incoming DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3911
diff
changeset
|
613 |
7610af1532c3
prototyping automated transcoding of incoming DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3911
diff
changeset
|
614 |
1146
200fcac0deb4
optimization for access to attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1145
diff
changeset
|
615 void ServerContext::AnswerAttachment(RestApiOutput& output, |
1700
f5ddbd9239dd
New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1632
diff
changeset
|
616 const std::string& resourceId, |
1146
200fcac0deb4
optimization for access to attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1145
diff
changeset
|
617 FileContentType content) |
226
8a26a8e85edf
refactoring to read files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
224
diff
changeset
|
618 { |
232
5368bbe813cf
refactoring of attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
227
diff
changeset
|
619 FileInfo attachment; |
1700
f5ddbd9239dd
New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1632
diff
changeset
|
620 if (!index_.LookupAttachment(attachment, resourceId, content)) |
232
5368bbe813cf
refactoring of attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
227
diff
changeset
|
621 { |
1700
f5ddbd9239dd
New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1632
diff
changeset
|
622 throw OrthancException(ErrorCode_UnknownResource); |
236 | 623 } |
226
8a26a8e85edf
refactoring to read files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
224
diff
changeset
|
624 |
3175
574890d14c92
new metrics: orthanc_store_dicom_duration_ms, orthanc_storage_[create|read|remove]_duration_ms
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3174
diff
changeset
|
625 StorageAccessor accessor(area_, GetMetricsRegistry()); |
1772
53e045b5a8ec
MIME content type can be associated to custom attachments (cf. "UserContentType")
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1758
diff
changeset
|
626 accessor.AnswerFile(output, attachment, GetFileContentMime(content)); |
226
8a26a8e85edf
refactoring to read files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
224
diff
changeset
|
627 } |
8a26a8e85edf
refactoring to read files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
224
diff
changeset
|
628 |
8a26a8e85edf
refactoring to read files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
224
diff
changeset
|
629 |
1700
f5ddbd9239dd
New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1632
diff
changeset
|
630 void ServerContext::ChangeAttachmentCompression(const std::string& resourceId, |
f5ddbd9239dd
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631 FileContentType attachmentType, |
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632 CompressionType compression) |
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633 { |
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634 LOG(INFO) << "Changing compression type for attachment " |
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635 << EnumerationToString(attachmentType) |
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636 << " of resource " << resourceId << " to " |
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637 << compression; |
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638 |
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639 FileInfo attachment; |
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640 if (!index_.LookupAttachment(attachment, resourceId, attachmentType)) |
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641 { |
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642 throw OrthancException(ErrorCode_UnknownResource); |
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643 } |
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644 |
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645 if (attachment.GetCompressionType() == compression) |
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646 { |
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647 // Nothing to do |
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648 return; |
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649 } |
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650 |
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651 std::string content; |
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652 |
3175
574890d14c92
new metrics: orthanc_store_dicom_duration_ms, orthanc_storage_[create|read|remove]_duration_ms
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653 StorageAccessor accessor(area_, GetMetricsRegistry()); |
1700
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654 accessor.Read(content, attachment); |
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655 |
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656 FileInfo modified = accessor.Write(content.empty() ? NULL : content.c_str(), |
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657 content.size(), attachmentType, compression, storeMD5_); |
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658 |
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659 try |
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660 { |
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661 StoreStatus status = index_.AddAttachment(modified, resourceId); |
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662 if (status != StoreStatus_Success) |
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663 { |
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664 accessor.Remove(modified); |
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665 throw OrthancException(ErrorCode_Database); |
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666 } |
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667 } |
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668 catch (OrthancException&) |
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669 { |
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670 accessor.Remove(modified); |
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671 throw; |
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672 } |
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673 } |
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674 |
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675 |
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676 void ServerContext::ReadDicomAsJsonInternal(std::string& result, |
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677 const std::string& instancePublicId) |
2127 | 678 { |
2128
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679 FileInfo attachment; |
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680 if (index_.LookupAttachment(attachment, instancePublicId, FileContentType_DicomAsJson)) |
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681 { |
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682 ReadAttachment(result, attachment); |
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683 } |
2409
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684 else |
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685 { |
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686 // The "DICOM as JSON" summary is not available from the Orthanc |
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687 // store (most probably deleted), reconstruct it from the DICOM file |
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688 std::string dicom; |
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689 ReadDicom(dicom, instancePublicId); |
2128
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690 |
2409
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691 LOG(INFO) << "Reconstructing the missing DICOM-as-JSON summary for instance: " |
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692 << instancePublicId; |
2128
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693 |
2409
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694 ParsedDicomFile parsed(dicom); |
2128
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695 |
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696 Json::Value summary; |
4140
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697 OrthancConfiguration::DefaultDicomDatasetToJson(summary, parsed); |
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698 |
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699 result = summary.toStyledString(); |
2128
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700 |
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701 if (!AddAttachment(instancePublicId, FileContentType_DicomAsJson, |
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702 result.c_str(), result.size())) |
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703 { |
2956 | 704 throw OrthancException(ErrorCode_InternalError, |
705 "Cannot associate the DICOM-as-JSON summary to instance: " + instancePublicId); | |
2409
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706 } |
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707 } |
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708 } |
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709 |
2128
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710 |
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711 void ServerContext::ReadDicomAsJson(std::string& result, |
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712 const std::string& instancePublicId, |
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713 const std::set<DicomTag>& ignoreTagLength) |
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714 { |
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715 if (ignoreTagLength.empty()) |
2128
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716 { |
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717 ReadDicomAsJsonInternal(result, instancePublicId); |
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718 } |
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719 else |
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720 { |
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721 Json::Value tmp; |
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722 ReadDicomAsJson(tmp, instancePublicId, ignoreTagLength); |
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723 result = tmp.toStyledString(); |
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724 } |
2127 | 725 } |
726 | |
727 | |
2124 | 728 void ServerContext::ReadDicomAsJson(Json::Value& result, |
2409
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729 const std::string& instancePublicId, |
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730 const std::set<DicomTag>& ignoreTagLength) |
226
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731 { |
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732 if (ignoreTagLength.empty()) |
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733 { |
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734 std::string tmp; |
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735 ReadDicomAsJsonInternal(tmp, instancePublicId); |
226
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736 |
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737 Json::Reader reader; |
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738 if (!reader.parse(tmp, result)) |
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739 { |
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740 throw OrthancException(ErrorCode_CorruptedFile); |
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741 } |
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742 } |
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743 else |
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744 { |
2409
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745 // The "DicomAsJson" attachment might have stored some tags as |
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746 // "too long". We are forced to re-parse the DICOM file. |
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747 std::string dicom; |
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748 ReadDicom(dicom, instancePublicId); |
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749 |
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750 ParsedDicomFile parsed(dicom); |
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751 OrthancConfiguration::DefaultDicomDatasetToJson(result, parsed, ignoreTagLength); |
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752 } |
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753 } |
227
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754 |
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755 |
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756 void ServerContext::ReadAttachment(std::string& result, |
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757 const std::string& instancePublicId, |
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758 FileContentType content, |
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759 bool uncompressIfNeeded) |
227
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760 { |
232
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761 FileInfo attachment; |
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762 if (!index_.LookupAttachment(attachment, instancePublicId, content)) |
227
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763 { |
2956 | 764 throw OrthancException(ErrorCode_InternalError, |
765 "Unable to read attachment " + EnumerationToString(content) + | |
766 " of instance " + instancePublicId); | |
227
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767 } |
1550 | 768 |
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769 assert(attachment.GetContentType() == content); |
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770 |
1550 | 771 if (uncompressIfNeeded) |
772 { | |
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773 ReadAttachment(result, attachment); |
1550 | 774 } |
775 else | |
776 { | |
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777 // Do not uncompress the content of the storage area, return the |
1550 | 778 // raw data |
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779 StorageAccessor accessor(area_, GetMetricsRegistry()); |
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780 accessor.ReadRaw(result, attachment); |
1550 | 781 } |
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782 } |
285
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783 |
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784 |
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785 void ServerContext::ReadAttachment(std::string& result, |
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786 const FileInfo& attachment) |
1778
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787 { |
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788 // This will decompress the attachment |
3175
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789 StorageAccessor accessor(area_, GetMetricsRegistry()); |
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790 accessor.Read(result, attachment); |
1778
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791 } |
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792 |
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793 |
285
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794 IDynamicObject* ServerContext::DicomCacheProvider::Provide(const std::string& instancePublicId) |
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795 { |
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796 std::string content; |
2124 | 797 context_.ReadDicom(content, instancePublicId); |
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798 return new ParsedDicomFile(content); |
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799 } |
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800 |
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801 |
778
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802 ServerContext::DicomCacheLocker::DicomCacheLocker(ServerContext& that, |
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803 const std::string& instancePublicId) : |
1129
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804 that_(that), |
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805 lock_(that_.dicomCacheMutex_) |
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806 { |
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807 #if ENABLE_DICOM_CACHE == 0 |
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808 static std::unique_ptr<IDynamicObject> p; |
3836 | 809 p.reset(that_.provider_.Provide(instancePublicId)); |
778
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810 dicom_ = dynamic_cast<ParsedDicomFile*>(p.get()); |
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811 #else |
778
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812 dicom_ = &dynamic_cast<ParsedDicomFile&>(that_.dicomCache_.Access(instancePublicId)); |
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813 #endif |
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814 } |
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815 |
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816 |
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817 ServerContext::DicomCacheLocker::~DicomCacheLocker() |
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818 { |
285
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819 } |
304 | 820 |
821 | |
695
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822 void ServerContext::SetStoreMD5ForAttachments(bool storeMD5) |
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823 { |
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824 LOG(INFO) << "Storing MD5 for attachments: " << (storeMD5 ? "yes" : "no"); |
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825 storeMD5_ = storeMD5; |
695
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826 } |
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827 |
699
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828 |
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829 bool ServerContext::AddAttachment(const std::string& resourceId, |
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830 FileContentType attachmentType, |
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831 const void* data, |
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832 size_t size) |
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833 { |
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834 LOG(INFO) << "Adding attachment " << EnumerationToString(attachmentType) << " to resource " << resourceId; |
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835 |
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836 // TODO Should we use "gzip" instead? |
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837 CompressionType compression = (compressionEnabled_ ? CompressionType_ZlibWithSize : CompressionType_None); |
699
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838 |
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839 StorageAccessor accessor(area_, GetMetricsRegistry()); |
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840 FileInfo attachment = accessor.Write(data, size, attachmentType, compression, storeMD5_); |
699
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841 |
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842 StoreStatus status = index_.AddAttachment(attachment, resourceId); |
699
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843 if (status != StoreStatus_Success) |
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844 { |
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845 accessor.Remove(attachment); |
699
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846 return false; |
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847 } |
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848 else |
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849 { |
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850 return true; |
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851 } |
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852 } |
1145
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853 |
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854 |
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855 bool ServerContext::DeleteResource(Json::Value& target, |
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856 const std::string& uuid, |
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857 ResourceType expectedType) |
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858 { |
2507 | 859 if (expectedType == ResourceType_Instance) |
860 { | |
861 // remove the file from the DicomCache | |
862 boost::mutex::scoped_lock lock(dicomCacheMutex_); | |
863 dicomCache_.Invalidate(uuid); | |
864 } | |
865 | |
1145
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866 return index_.DeleteResource(target, uuid, expectedType); |
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|
867 } |
1189
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1165
diff
changeset
|
868 |
6b9b02a16e99
NewChildInstance change type
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1165
diff
changeset
|
869 |
1198 | 870 void ServerContext::SignalChange(const ServerIndexChange& change) |
1189
6b9b02a16e99
NewChildInstance change type
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1165
diff
changeset
|
871 { |
1436
0a3e3be59094
uncoupling of SignalChange for Lua scripts
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1434
diff
changeset
|
872 pendingChanges_.Enqueue(change.Clone()); |
1189
6b9b02a16e99
NewChildInstance change type
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1165
diff
changeset
|
873 } |
1232
f1c01451a8ee
Introspection of plugins, Plugins can extend Orthanc Explorer with custom JavaScript
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1198
diff
changeset
|
874 |
f1c01451a8ee
Introspection of plugins, Plugins can extend Orthanc Explorer with custom JavaScript
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1198
diff
changeset
|
875 |
2136
dd609a99d39a
uniformization of the macro naming
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2135
diff
changeset
|
876 #if ORTHANC_ENABLE_PLUGINS == 1 |
1434
f9cd40166269
refactoring of OrthancPlugins, improvement in ServeFolders
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1433
diff
changeset
|
877 void ServerContext::SetPlugins(OrthancPlugins& plugins) |
1232
f1c01451a8ee
Introspection of plugins, Plugins can extend Orthanc Explorer with custom JavaScript
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1198
diff
changeset
|
878 { |
3947
cf6eb4fc6841
fix issue 179: use a shared mutex to avoid deadlock in python plugins
Alain Mazy <alain@mazy.be>
parents:
3945
diff
changeset
|
879 boost::unique_lock<boost::shared_mutex> lock(listenersMutex_); |
1459 | 880 |
1434
f9cd40166269
refactoring of OrthancPlugins, improvement in ServeFolders
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1433
diff
changeset
|
881 plugins_ = &plugins; |
f9cd40166269
refactoring of OrthancPlugins, improvement in ServeFolders
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1433
diff
changeset
|
882 |
f9cd40166269
refactoring of OrthancPlugins, improvement in ServeFolders
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1433
diff
changeset
|
883 // TODO REFACTOR THIS |
f9cd40166269
refactoring of OrthancPlugins, improvement in ServeFolders
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1433
diff
changeset
|
884 listeners_.clear(); |
2738
3a55b77339ff
fix deadlock in Lua scripts
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2716
diff
changeset
|
885 listeners_.push_back(ServerListener(luaListener_, "Lua")); |
1434
f9cd40166269
refactoring of OrthancPlugins, improvement in ServeFolders
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1433
diff
changeset
|
886 listeners_.push_back(ServerListener(plugins, "plugin")); |
1232
f1c01451a8ee
Introspection of plugins, Plugins can extend Orthanc Explorer with custom JavaScript
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1198
diff
changeset
|
887 } |
f1c01451a8ee
Introspection of plugins, Plugins can extend Orthanc Explorer with custom JavaScript
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1198
diff
changeset
|
888 |
f1c01451a8ee
Introspection of plugins, Plugins can extend Orthanc Explorer with custom JavaScript
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1198
diff
changeset
|
889 |
1434
f9cd40166269
refactoring of OrthancPlugins, improvement in ServeFolders
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1433
diff
changeset
|
890 void ServerContext::ResetPlugins() |
1232
f1c01451a8ee
Introspection of plugins, Plugins can extend Orthanc Explorer with custom JavaScript
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1198
diff
changeset
|
891 { |
3947
cf6eb4fc6841
fix issue 179: use a shared mutex to avoid deadlock in python plugins
Alain Mazy <alain@mazy.be>
parents:
3945
diff
changeset
|
892 boost::unique_lock<boost::shared_mutex> lock(listenersMutex_); |
1459 | 893 |
1434
f9cd40166269
refactoring of OrthancPlugins, improvement in ServeFolders
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1433
diff
changeset
|
894 plugins_ = NULL; |
f9cd40166269
refactoring of OrthancPlugins, improvement in ServeFolders
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1433
diff
changeset
|
895 |
f9cd40166269
refactoring of OrthancPlugins, improvement in ServeFolders
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1433
diff
changeset
|
896 // TODO REFACTOR THIS |
f9cd40166269
refactoring of OrthancPlugins, improvement in ServeFolders
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1433
diff
changeset
|
897 listeners_.clear(); |
2738
3a55b77339ff
fix deadlock in Lua scripts
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2716
diff
changeset
|
898 listeners_.push_back(ServerListener(luaListener_, "Lua")); |
1232
f1c01451a8ee
Introspection of plugins, Plugins can extend Orthanc Explorer with custom JavaScript
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1198
diff
changeset
|
899 } |
f1c01451a8ee
Introspection of plugins, Plugins can extend Orthanc Explorer with custom JavaScript
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1198
diff
changeset
|
900 |
f1c01451a8ee
Introspection of plugins, Plugins can extend Orthanc Explorer with custom JavaScript
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1198
diff
changeset
|
901 |
1434
f9cd40166269
refactoring of OrthancPlugins, improvement in ServeFolders
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1433
diff
changeset
|
902 const OrthancPlugins& ServerContext::GetPlugins() const |
1232
f1c01451a8ee
Introspection of plugins, Plugins can extend Orthanc Explorer with custom JavaScript
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1198
diff
changeset
|
903 { |
f1c01451a8ee
Introspection of plugins, Plugins can extend Orthanc Explorer with custom JavaScript
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1198
diff
changeset
|
904 if (HasPlugins()) |
f1c01451a8ee
Introspection of plugins, Plugins can extend Orthanc Explorer with custom JavaScript
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1198
diff
changeset
|
905 { |
f1c01451a8ee
Introspection of plugins, Plugins can extend Orthanc Explorer with custom JavaScript
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1198
diff
changeset
|
906 return *plugins_; |
f1c01451a8ee
Introspection of plugins, Plugins can extend Orthanc Explorer with custom JavaScript
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1198
diff
changeset
|
907 } |
f1c01451a8ee
Introspection of plugins, Plugins can extend Orthanc Explorer with custom JavaScript
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1198
diff
changeset
|
908 else |
f1c01451a8ee
Introspection of plugins, Plugins can extend Orthanc Explorer with custom JavaScript
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1198
diff
changeset
|
909 { |
f1c01451a8ee
Introspection of plugins, Plugins can extend Orthanc Explorer with custom JavaScript
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1198
diff
changeset
|
910 throw OrthancException(ErrorCode_InternalError); |
f1c01451a8ee
Introspection of plugins, Plugins can extend Orthanc Explorer with custom JavaScript
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1198
diff
changeset
|
911 } |
f1c01451a8ee
Introspection of plugins, Plugins can extend Orthanc Explorer with custom JavaScript
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1198
diff
changeset
|
912 } |
1632
eb8fbcf008b5
fix build with plugins disabled
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1582
diff
changeset
|
913 |
1741
06addfcd1d4c
OrthancStarted and OrthancStopped events in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1701
diff
changeset
|
914 OrthancPlugins& ServerContext::GetPlugins() |
06addfcd1d4c
OrthancStarted and OrthancStopped events in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1701
diff
changeset
|
915 { |
06addfcd1d4c
OrthancStarted and OrthancStopped events in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1701
diff
changeset
|
916 if (HasPlugins()) |
06addfcd1d4c
OrthancStarted and OrthancStopped events in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1701
diff
changeset
|
917 { |
06addfcd1d4c
OrthancStarted and OrthancStopped events in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1701
diff
changeset
|
918 return *plugins_; |
06addfcd1d4c
OrthancStarted and OrthancStopped events in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1701
diff
changeset
|
919 } |
06addfcd1d4c
OrthancStarted and OrthancStopped events in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1701
diff
changeset
|
920 else |
06addfcd1d4c
OrthancStarted and OrthancStopped events in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1701
diff
changeset
|
921 { |
06addfcd1d4c
OrthancStarted and OrthancStopped events in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1701
diff
changeset
|
922 throw OrthancException(ErrorCode_InternalError); |
06addfcd1d4c
OrthancStarted and OrthancStopped events in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1701
diff
changeset
|
923 } |
06addfcd1d4c
OrthancStarted and OrthancStopped events in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1701
diff
changeset
|
924 } |
06addfcd1d4c
OrthancStarted and OrthancStopped events in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1701
diff
changeset
|
925 |
1632
eb8fbcf008b5
fix build with plugins disabled
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1582
diff
changeset
|
926 #endif |
eb8fbcf008b5
fix build with plugins disabled
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1582
diff
changeset
|
927 |
eb8fbcf008b5
fix build with plugins disabled
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1582
diff
changeset
|
928 |
eb8fbcf008b5
fix build with plugins disabled
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1582
diff
changeset
|
929 bool ServerContext::HasPlugins() const |
eb8fbcf008b5
fix build with plugins disabled
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1582
diff
changeset
|
930 { |
2136
dd609a99d39a
uniformization of the macro naming
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2135
diff
changeset
|
931 #if ORTHANC_ENABLE_PLUGINS == 1 |
1632
eb8fbcf008b5
fix build with plugins disabled
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1582
diff
changeset
|
932 return (plugins_ != NULL); |
eb8fbcf008b5
fix build with plugins disabled
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1582
diff
changeset
|
933 #else |
eb8fbcf008b5
fix build with plugins disabled
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1582
diff
changeset
|
934 return false; |
eb8fbcf008b5
fix build with plugins disabled
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1582
diff
changeset
|
935 #endif |
eb8fbcf008b5
fix build with plugins disabled
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1582
diff
changeset
|
936 } |
1757
98abb8d7f905
ServerContext::Apply lookup
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1741
diff
changeset
|
937 |
98abb8d7f905
ServerContext::Apply lookup
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1741
diff
changeset
|
938 |
4196
37310bb1cd30
Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4143
diff
changeset
|
939 void ServerContext::ApplyInternal(ILookupVisitor& visitor, |
37310bb1cd30
Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4143
diff
changeset
|
940 const DatabaseLookup& lookup, |
37310bb1cd30
Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4143
diff
changeset
|
941 ResourceType queryLevel, |
37310bb1cd30
Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4143
diff
changeset
|
942 size_t since, |
37310bb1cd30
Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4143
diff
changeset
|
943 size_t limit) |
37310bb1cd30
Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4143
diff
changeset
|
944 { |
3679
6358923d3ced
C-FIND: forbid wildcard matching on some VRs, ignore main tags below the queried level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3677
diff
changeset
|
945 unsigned int databaseLimit = (queryLevel == ResourceType_Instance ? |
6358923d3ced
C-FIND: forbid wildcard matching on some VRs, ignore main tags below the queried level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3677
diff
changeset
|
946 limitFindInstances_ : limitFindResults_); |
3015
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
947 |
1757
98abb8d7f905
ServerContext::Apply lookup
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1741
diff
changeset
|
948 std::vector<std::string> resources, instances; |
3015
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
949 |
3204
8792867b739a
fix incorrect "too many results"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3175
diff
changeset
|
950 { |
8792867b739a
fix incorrect "too many results"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3175
diff
changeset
|
951 const size_t lookupLimit = (databaseLimit == 0 ? 0 : databaseLimit + 1); |
8792867b739a
fix incorrect "too many results"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3175
diff
changeset
|
952 GetIndex().ApplyLookupResources(resources, &instances, lookup, queryLevel, lookupLimit); |
8792867b739a
fix incorrect "too many results"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3175
diff
changeset
|
953 } |
3025
039a9d262d64
preparing to speed up find in databases
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3021
diff
changeset
|
954 |
3033
5da6d1063d8f
effectively replacing LookupResource by DatabaseLookup in searches
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3031
diff
changeset
|
955 bool complete = (databaseLimit == 0 || |
3204
8792867b739a
fix incorrect "too many results"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3175
diff
changeset
|
956 resources.size() <= databaseLimit); |
1757
98abb8d7f905
ServerContext::Apply lookup
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1741
diff
changeset
|
957 |
3005
8265a6b56100
DicomMap::FromDicomAsJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3003
diff
changeset
|
958 LOG(INFO) << "Number of candidate resources after fast DB filtering on main DICOM tags: " << resources.size(); |
3003
5ae3ff2398e9
refactoring OrthancFindRequestHandler using LookupResource::IVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3001
diff
changeset
|
959 |
3679
6358923d3ced
C-FIND: forbid wildcard matching on some VRs, ignore main tags below the queried level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3677
diff
changeset
|
960 /** |
6358923d3ced
C-FIND: forbid wildcard matching on some VRs, ignore main tags below the queried level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3677
diff
changeset
|
961 * "resources" contains the Orthanc ID of the resource at level |
6358923d3ced
C-FIND: forbid wildcard matching on some VRs, ignore main tags below the queried level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3677
diff
changeset
|
962 * "queryLevel", "instances" contains one the Orthanc ID of one |
6358923d3ced
C-FIND: forbid wildcard matching on some VRs, ignore main tags below the queried level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3677
diff
changeset
|
963 * sample instance from this resource. |
6358923d3ced
C-FIND: forbid wildcard matching on some VRs, ignore main tags below the queried level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3677
diff
changeset
|
964 **/ |
1757
98abb8d7f905
ServerContext::Apply lookup
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1741
diff
changeset
|
965 assert(resources.size() == instances.size()); |
98abb8d7f905
ServerContext::Apply lookup
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1741
diff
changeset
|
966 |
3001
7695a9c81099
refactoring /tools/find using LookupResource::IVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2965
diff
changeset
|
967 size_t countResults = 0; |
2304
563bf878407a
Argument "Since" in URI "/tools/find" (related to issue 53)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2244
diff
changeset
|
968 size_t skipped = 0; |
3015
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
969 |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
970 const bool isDicomAsJsonNeeded = visitor.IsDicomAsJsonNeeded(); |
3012
af1530b45290
Optimization: On finds, do not read JSON (disk) if main DICOM tags (DB) are sufficient
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3005
diff
changeset
|
971 |
1757
98abb8d7f905
ServerContext::Apply lookup
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1741
diff
changeset
|
972 for (size_t i = 0; i < instances.size(); i++) |
98abb8d7f905
ServerContext::Apply lookup
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1741
diff
changeset
|
973 { |
3012
af1530b45290
Optimization: On finds, do not read JSON (disk) if main DICOM tags (DB) are sufficient
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3005
diff
changeset
|
974 // Optimization in Orthanc 1.5.1 - Don't read the full JSON from |
af1530b45290
Optimization: On finds, do not read JSON (disk) if main DICOM tags (DB) are sufficient
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3005
diff
changeset
|
975 // the disk if only "main DICOM tags" are to be returned |
af1530b45290
Optimization: On finds, do not read JSON (disk) if main DICOM tags (DB) are sufficient
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3005
diff
changeset
|
976 |
3712
2a170a8f1faf
replacing std::auto_ptr by std::unique_ptr
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3679
diff
changeset
|
977 std::unique_ptr<Json::Value> dicomAsJson; |
3012
af1530b45290
Optimization: On finds, do not read JSON (disk) if main DICOM tags (DB) are sufficient
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diff
changeset
|
978 |
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Optimization: On finds, do not read JSON (disk) if main DICOM tags (DB) are sufficient
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diff
changeset
|
979 bool hasOnlyMainDicomTags; |
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Optimization: On finds, do not read JSON (disk) if main DICOM tags (DB) are sufficient
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980 DicomMap dicom; |
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Optimization: On finds, do not read JSON (disk) if main DICOM tags (DB) are sufficient
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diff
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|
981 |
3677
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982 if (findStorageAccessMode_ == FindStorageAccessMode_DatabaseOnly || |
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refactoring FindStorageAccessMode
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diff
changeset
|
983 findStorageAccessMode_ == FindStorageAccessMode_DiskOnAnswer || |
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On C-FIND, avoid accessing the storage area whenever possible
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|
984 lookup.HasOnlyMainDicomTags()) |
3012
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Optimization: On finds, do not read JSON (disk) if main DICOM tags (DB) are sufficient
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985 { |
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Optimization: On finds, do not read JSON (disk) if main DICOM tags (DB) are sufficient
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|
986 // Case (1): The main DICOM tags, as stored in the database, |
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Optimization: On finds, do not read JSON (disk) if main DICOM tags (DB) are sufficient
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diff
changeset
|
987 // are sufficient to look for match |
3015
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changeset
|
988 |
3679
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|
989 DicomMap tmp; |
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|
990 if (!GetIndex().GetAllMainDicomTags(tmp, instances[i])) |
3015
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|
991 { |
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diff
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|
992 // The instance has been removed during the execution of the |
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|
993 // lookup, ignore it |
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|
994 continue; |
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On C-FIND, avoid accessing the storage area whenever possible
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diff
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|
995 } |
3679
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diff
changeset
|
996 |
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parents:
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diff
changeset
|
997 // New in Orthanc 1.6.0: Only keep the main DICOM tags at the |
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C-FIND: forbid wildcard matching on some VRs, ignore main tags below the queried level
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diff
changeset
|
998 // level of interest for the query |
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C-FIND: forbid wildcard matching on some VRs, ignore main tags below the queried level
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|
999 switch (queryLevel) |
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1000 { |
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|
1001 // WARNING: Don't reorder cases below, and don't add "break" |
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changeset
|
1002 case ResourceType_Instance: |
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C-FIND: forbid wildcard matching on some VRs, ignore main tags below the queried level
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diff
changeset
|
1003 dicom.MergeMainDicomTags(tmp, ResourceType_Instance); |
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1004 |
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|
1005 case ResourceType_Series: |
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|
1006 dicom.MergeMainDicomTags(tmp, ResourceType_Series); |
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diff
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|
1007 |
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changeset
|
1008 case ResourceType_Study: |
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|
1009 dicom.MergeMainDicomTags(tmp, ResourceType_Study); |
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1010 |
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diff
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|
1011 case ResourceType_Patient: |
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|
1012 dicom.MergeMainDicomTags(tmp, ResourceType_Patient); |
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diff
changeset
|
1013 break; |
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|
1014 |
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diff
changeset
|
1015 default: |
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|
1016 throw OrthancException(ErrorCode_InternalError); |
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|
1017 } |
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|
1018 |
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|
1019 hasOnlyMainDicomTags = true; |
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|
1020 } |
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|
1021 else |
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|
1022 { |
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diff
changeset
|
1023 // Case (2): Need to read the "DICOM-as-JSON" attachment from |
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diff
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|
1024 // the storage area |
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diff
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|
1025 dicomAsJson.reset(new Json::Value); |
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diff
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|
1026 ReadDicomAsJson(*dicomAsJson, instances[i]); |
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|
1027 |
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|
1028 dicom.FromDicomAsJson(*dicomAsJson); |
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diff
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|
1029 |
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diff
changeset
|
1030 // This map contains the entire JSON, i.e. more than the main DICOM tags |
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diff
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|
1031 hasOnlyMainDicomTags = false; |
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|
1032 } |
1757
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ServerContext::Apply lookup
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|
1033 |
98abb8d7f905
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changeset
|
1034 if (lookup.IsMatch(dicom)) |
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diff
changeset
|
1035 { |
2304
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Argument "Since" in URI "/tools/find" (related to issue 53)
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
1036 if (skipped < since) |
1757
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
1037 { |
2304
563bf878407a
Argument "Since" in URI "/tools/find" (related to issue 53)
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
1038 skipped++; |
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Argument "Since" in URI "/tools/find" (related to issue 53)
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diff
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|
1039 } |
563bf878407a
Argument "Since" in URI "/tools/find" (related to issue 53)
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
1040 else if (limit != 0 && |
3001
7695a9c81099
refactoring /tools/find using LookupResource::IVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1041 countResults >= limit) |
2304
563bf878407a
Argument "Since" in URI "/tools/find" (related to issue 53)
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
1042 { |
3003
5ae3ff2398e9
refactoring OrthancFindRequestHandler using LookupResource::IVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3001
diff
changeset
|
1043 // Too many results, don't mark as complete |
5ae3ff2398e9
refactoring OrthancFindRequestHandler using LookupResource::IVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
1044 complete = false; |
5ae3ff2398e9
refactoring OrthancFindRequestHandler using LookupResource::IVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
1045 break; |
1757
98abb8d7f905
ServerContext::Apply lookup
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
1046 } |
98abb8d7f905
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diff
changeset
|
1047 else |
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ServerContext::Apply lookup
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diff
changeset
|
1048 { |
3677
4182cde57afb
refactoring FindStorageAccessMode
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diff
changeset
|
1049 if ((findStorageAccessMode_ == FindStorageAccessMode_DiskOnLookupAndAnswer || |
4182cde57afb
refactoring FindStorageAccessMode
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diff
changeset
|
1050 findStorageAccessMode_ == FindStorageAccessMode_DiskOnAnswer) && |
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|
1051 dicomAsJson.get() == NULL && |
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diff
changeset
|
1052 isDicomAsJsonNeeded) |
3012
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diff
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|
1053 { |
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diff
changeset
|
1054 dicomAsJson.reset(new Json::Value); |
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Optimization: On finds, do not read JSON (disk) if main DICOM tags (DB) are sufficient
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diff
changeset
|
1055 ReadDicomAsJson(*dicomAsJson, instances[i]); |
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Optimization: On finds, do not read JSON (disk) if main DICOM tags (DB) are sufficient
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diff
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|
1056 } |
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diff
changeset
|
1057 |
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Optimization: On finds, do not read JSON (disk) if main DICOM tags (DB) are sufficient
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parents:
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diff
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|
1058 if (hasOnlyMainDicomTags) |
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diff
changeset
|
1059 { |
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
1060 // This is Case (1): The variable "dicom" only contains the main DICOM tags |
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diff
changeset
|
1061 visitor.Visit(resources[i], instances[i], dicom, dicomAsJson.get()); |
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diff
changeset
|
1062 } |
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diff
changeset
|
1063 else |
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changeset
|
1064 { |
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diff
changeset
|
1065 // Remove the non-main DICOM tags from "dicom" if Case (2) |
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Optimization: On finds, do not read JSON (disk) if main DICOM tags (DB) are sufficient
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diff
changeset
|
1066 // was used, for consistency with Case (1) |
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Optimization: On finds, do not read JSON (disk) if main DICOM tags (DB) are sufficient
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changeset
|
1067 |
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Optimization: On finds, do not read JSON (disk) if main DICOM tags (DB) are sufficient
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diff
changeset
|
1068 DicomMap mainDicomTags; |
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diff
changeset
|
1069 mainDicomTags.ExtractMainDicomTags(dicom); |
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changeset
|
1070 visitor.Visit(resources[i], instances[i], mainDicomTags, dicomAsJson.get()); |
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diff
changeset
|
1071 } |
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diff
changeset
|
1072 |
3001
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diff
changeset
|
1073 countResults ++; |
1757
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ServerContext::Apply lookup
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diff
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|
1074 } |
98abb8d7f905
ServerContext::Apply lookup
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parents:
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diff
changeset
|
1075 } |
98abb8d7f905
ServerContext::Apply lookup
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parents:
1741
diff
changeset
|
1076 } |
3001
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refactoring /tools/find using LookupResource::IVisitor
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diff
changeset
|
1077 |
3003
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1078 if (complete) |
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1079 { |
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1080 visitor.MarkAsComplete(); |
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1081 } |
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1082 |
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1083 LOG(INFO) << "Number of matching resources: " << countResults; |
1757
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1084 } |
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1085 |
2626 | 1086 |
4196
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1087 |
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1088 namespace |
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1089 { |
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1090 class ModalitiesInStudyVisitor : public ServerContext::ILookupVisitor |
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1091 { |
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1092 private: |
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1093 class Study : public boost::noncopyable |
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1094 { |
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1095 private: |
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1096 std::string orthancId_; |
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1097 std::string instanceId_; |
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1098 DicomMap mainDicomTags_; |
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1099 Json::Value dicomAsJson_; |
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1100 std::set<std::string> modalitiesInStudy_; |
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1101 |
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1102 public: |
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1103 Study(const std::string& instanceId, |
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1104 const DicomMap& seriesTags) : |
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1105 instanceId_(instanceId), |
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1106 dicomAsJson_(Json::nullValue) |
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1107 { |
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1108 { |
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1109 DicomMap tmp; |
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1110 tmp.Assign(seriesTags); |
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1111 tmp.SetValue(DICOM_TAG_SOP_INSTANCE_UID, "dummy", false); |
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1112 DicomInstanceHasher hasher(tmp); |
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1113 orthancId_ = hasher.HashStudy(); |
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1114 } |
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1115 |
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1116 mainDicomTags_.MergeMainDicomTags(seriesTags, ResourceType_Study); |
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1117 mainDicomTags_.MergeMainDicomTags(seriesTags, ResourceType_Patient); |
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1118 AddModality(seriesTags); |
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1119 } |
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1120 |
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1121 void AddModality(const DicomMap& seriesTags) |
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1122 { |
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1123 std::string modality; |
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1124 if (seriesTags.LookupStringValue(modality, DICOM_TAG_MODALITY, false) && |
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1125 !modality.empty()) |
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1126 { |
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1127 modalitiesInStudy_.insert(modality); |
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1128 } |
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1129 } |
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1130 |
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1131 void SetDicomAsJson(const Json::Value& dicomAsJson) |
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1132 { |
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1133 dicomAsJson_ = dicomAsJson; |
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1134 } |
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1135 |
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1136 const std::string& GetOrthancId() const |
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1137 { |
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1138 return orthancId_; |
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1139 } |
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1140 |
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1141 const std::string& GetInstanceId() const |
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1142 { |
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1143 return instanceId_; |
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1144 } |
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1145 |
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1146 const DicomMap& GetMainDicomTags() const |
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1147 { |
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1148 return mainDicomTags_; |
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1149 } |
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1150 |
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1151 const Json::Value* GetDicomAsJson() const |
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1152 { |
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1153 if (dicomAsJson_.type() == Json::nullValue) |
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1154 { |
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1155 return NULL; |
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1156 } |
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1157 else |
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1158 { |
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1159 return &dicomAsJson_; |
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1160 } |
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1161 } |
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1162 }; |
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1163 |
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1164 typedef std::map<std::string, Study*> Studies; |
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1165 |
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1166 bool isDicomAsJsonNeeded_; |
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1167 bool complete_; |
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1168 Studies studies_; |
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1169 |
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1170 public: |
4205 | 1171 explicit ModalitiesInStudyVisitor(bool isDicomAsJsonNeeded) : |
1172 isDicomAsJsonNeeded_(isDicomAsJsonNeeded), | |
1173 complete_(false) | |
4196
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1174 { |
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1175 } |
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1176 |
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1177 ~ModalitiesInStudyVisitor() |
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1178 { |
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1179 for (Studies::const_iterator it = studies_.begin(); it != studies_.end(); ++it) |
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1180 { |
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1181 assert(it->second != NULL); |
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1182 delete it->second; |
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1183 } |
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1184 |
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1185 studies_.clear(); |
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1186 } |
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1187 |
4205 | 1188 virtual bool IsDicomAsJsonNeeded() const ORTHANC_OVERRIDE |
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1189 { |
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1190 return isDicomAsJsonNeeded_; |
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1191 } |
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1192 |
4205 | 1193 virtual void MarkAsComplete() ORTHANC_OVERRIDE |
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1194 { |
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1195 complete_ = true; |
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1196 } |
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1197 |
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1198 virtual void Visit(const std::string& publicId, |
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1199 const std::string& instanceId, |
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1200 const DicomMap& seriesTags, |
4205 | 1201 const Json::Value* dicomAsJson) ORTHANC_OVERRIDE |
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1202 { |
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1203 std::string studyInstanceUid; |
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1204 if (seriesTags.LookupStringValue(studyInstanceUid, DICOM_TAG_STUDY_INSTANCE_UID, false)) |
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1205 { |
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1206 Studies::iterator found = studies_.find(studyInstanceUid); |
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1207 if (found == studies_.end()) |
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1208 { |
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1209 // New study |
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1210 std::unique_ptr<Study> study(new Study(instanceId, seriesTags)); |
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1211 |
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1212 if (dicomAsJson != NULL) |
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1213 { |
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1214 study->SetDicomAsJson(*dicomAsJson); |
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1215 } |
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1216 |
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1217 studies_[studyInstanceUid] = study.release(); |
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1218 } |
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1219 else |
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1220 { |
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1221 // Already existing study |
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1222 found->second->AddModality(seriesTags); |
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1223 } |
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1224 } |
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1225 } |
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1226 |
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1227 void Forward(ILookupVisitor& callerVisitor, |
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1228 size_t since, |
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1229 size_t limit) const |
4205 | 1230 { |
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1231 size_t index = 0; |
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1232 size_t countForwarded = 0; |
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1233 |
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1234 for (Studies::const_iterator it = studies_.begin(); it != studies_.end(); ++it, index++) |
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1235 { |
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1236 if (limit == 0 || |
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1237 (index >= since && |
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1238 index < limit)) |
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1239 { |
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1240 assert(it->second != NULL); |
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1241 const Study& study = *it->second; |
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1242 |
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1243 countForwarded++; |
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1244 callerVisitor.Visit(study.GetOrthancId(), study.GetInstanceId(), |
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1245 study.GetMainDicomTags(), study.GetDicomAsJson()); |
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1246 } |
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1247 } |
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1248 |
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1249 if (countForwarded == studies_.size()) |
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1250 { |
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1251 callerVisitor.MarkAsComplete(); |
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1252 } |
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1253 } |
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1254 }; |
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1255 } |
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1256 |
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1257 |
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1258 void ServerContext::Apply(ILookupVisitor& visitor, |
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1259 const DatabaseLookup& lookup, |
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1260 ResourceType queryLevel, |
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1261 size_t since, |
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1262 size_t limit) |
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1263 { |
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1264 if (queryLevel == ResourceType_Study && |
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1265 lookup.HasTag(DICOM_TAG_MODALITIES_IN_STUDY)) |
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1266 { |
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1267 // Convert the study-level query, into a series-level query, |
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1268 // where "ModalitiesInStudy" is replaced by "Modality" |
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1269 DatabaseLookup seriesLookup; |
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1270 |
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1271 for (size_t i = 0; i < lookup.GetConstraintsCount(); i++) |
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1272 { |
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1273 const DicomTagConstraint& constraint = lookup.GetConstraint(i); |
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Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4143
diff
changeset
|
1274 if (constraint.GetTag() == DICOM_TAG_MODALITIES_IN_STUDY) |
37310bb1cd30
Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4143
diff
changeset
|
1275 { |
37310bb1cd30
Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4143
diff
changeset
|
1276 if ((constraint.GetConstraintType() == ConstraintType_Equal && constraint.GetValue().empty()) || |
37310bb1cd30
Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4143
diff
changeset
|
1277 (constraint.GetConstraintType() == ConstraintType_List && constraint.GetValues().empty())) |
37310bb1cd30
Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4143
diff
changeset
|
1278 { |
37310bb1cd30
Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4143
diff
changeset
|
1279 // Ignore universal lookup on "ModalitiesInStudy" (0008,0061), |
37310bb1cd30
Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4143
diff
changeset
|
1280 // this should have been handled by the caller |
4218
8e069a7e1c11
validation against orthanc-tests
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4205
diff
changeset
|
1281 ApplyInternal(visitor, lookup, queryLevel, since, limit); |
8e069a7e1c11
validation against orthanc-tests
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4205
diff
changeset
|
1282 return; |
4196
37310bb1cd30
Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4143
diff
changeset
|
1283 } |
37310bb1cd30
Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4143
diff
changeset
|
1284 else |
37310bb1cd30
Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4143
diff
changeset
|
1285 { |
37310bb1cd30
Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4143
diff
changeset
|
1286 DicomTagConstraint modality(constraint); |
37310bb1cd30
Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4143
diff
changeset
|
1287 modality.SetTag(DICOM_TAG_MODALITY); |
37310bb1cd30
Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4143
diff
changeset
|
1288 seriesLookup.AddConstraint(modality); |
37310bb1cd30
Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4143
diff
changeset
|
1289 } |
37310bb1cd30
Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4143
diff
changeset
|
1290 } |
37310bb1cd30
Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4143
diff
changeset
|
1291 else |
37310bb1cd30
Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4143
diff
changeset
|
1292 { |
37310bb1cd30
Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4143
diff
changeset
|
1293 seriesLookup.AddConstraint(constraint); |
37310bb1cd30
Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4143
diff
changeset
|
1294 } |
37310bb1cd30
Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4143
diff
changeset
|
1295 } |
37310bb1cd30
Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4143
diff
changeset
|
1296 |
37310bb1cd30
Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4143
diff
changeset
|
1297 ModalitiesInStudyVisitor seriesVisitor(visitor.IsDicomAsJsonNeeded()); |
37310bb1cd30
Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4143
diff
changeset
|
1298 ApplyInternal(seriesVisitor, seriesLookup, ResourceType_Series, 0, 0); |
37310bb1cd30
Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4143
diff
changeset
|
1299 seriesVisitor.Forward(visitor, since, limit); |
37310bb1cd30
Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4143
diff
changeset
|
1300 } |
37310bb1cd30
Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4143
diff
changeset
|
1301 else |
37310bb1cd30
Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4143
diff
changeset
|
1302 { |
37310bb1cd30
Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4143
diff
changeset
|
1303 ApplyInternal(visitor, lookup, queryLevel, since, limit); |
37310bb1cd30
Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4143
diff
changeset
|
1304 } |
37310bb1cd30
Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4143
diff
changeset
|
1305 } |
37310bb1cd30
Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4143
diff
changeset
|
1306 |
37310bb1cd30
Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4143
diff
changeset
|
1307 |
3015
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1308 bool ServerContext::LookupOrReconstructMetadata(std::string& target, |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1309 const std::string& publicId, |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1310 MetadataType metadata) |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1311 { |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1312 // This is a backwards-compatibility function, that can |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1313 // reconstruct metadata that were not generated by an older |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1314 // release of Orthanc |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1315 |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1316 if (metadata == MetadataType_Instance_SopClassUid || |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1317 metadata == MetadataType_Instance_TransferSyntax) |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1318 { |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1319 if (index_.LookupMetadata(target, publicId, metadata)) |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1320 { |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1321 return true; |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1322 } |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1323 else |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1324 { |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1325 // These metadata are mandatory in DICOM instances, and were |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1326 // introduced in Orthanc 1.2.0. The fact that |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1327 // "LookupMetadata()" has failed indicates that this database |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1328 // comes from an older release of Orthanc. |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1329 |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1330 DicomTag tag(0, 0); |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1331 |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1332 switch (metadata) |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1333 { |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1334 case MetadataType_Instance_SopClassUid: |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1335 tag = DICOM_TAG_SOP_CLASS_UID; |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1336 break; |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1337 |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1338 case MetadataType_Instance_TransferSyntax: |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1339 tag = DICOM_TAG_TRANSFER_SYNTAX_UID; |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1340 break; |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1341 |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1342 default: |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1343 throw OrthancException(ErrorCode_InternalError); |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1344 } |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1345 |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1346 Json::Value dicomAsJson; |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1347 ReadDicomAsJson(dicomAsJson, publicId); |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1348 |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1349 DicomMap tags; |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1350 tags.FromDicomAsJson(dicomAsJson); |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1351 |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1352 const DicomValue* value = tags.TestAndGetValue(tag); |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1353 |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1354 if (value != NULL && |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1355 !value->IsNull() && |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1356 !value->IsBinary()) |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1357 { |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1358 target = value->GetContent(); |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1359 |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1360 // Store for reuse |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1361 index_.SetMetadata(publicId, metadata, target); |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1362 return true; |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1363 } |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1364 else |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1365 { |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1366 // Should never happen |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1367 return false; |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1368 } |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1369 } |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1370 } |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1371 else |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1372 { |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1373 // No backward |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1374 return index_.LookupMetadata(target, publicId, metadata); |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1375 } |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1376 } |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1377 |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1378 |
2626 | 1379 void ServerContext::AddChildInstances(SetOfInstancesJob& job, |
1380 const std::string& publicId) | |
1381 { | |
1382 std::list<std::string> instances; | |
1383 GetIndex().GetChildInstances(instances, publicId); | |
1384 | |
1385 job.Reserve(job.GetInstancesCount() + instances.size()); | |
1386 | |
1387 for (std::list<std::string>::const_iterator | |
1388 it = instances.begin(); it != instances.end(); ++it) | |
1389 { | |
1390 job.AddInstance(*it); | |
1391 } | |
1392 } | |
2940
4767d36679ed
refactoring access to Orthanc configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2925
diff
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|
1393 |
4767d36679ed
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
1394 |
4767d36679ed
refactoring access to Orthanc configuration
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parents:
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diff
changeset
|
1395 void ServerContext::SignalUpdatedModalities() |
4767d36679ed
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Sebastien Jodogne <s.jodogne@gmail.com>
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2925
diff
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|
1396 { |
4767d36679ed
refactoring access to Orthanc configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2925
diff
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|
1397 #if ORTHANC_ENABLE_PLUGINS == 1 |
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refactoring access to Orthanc configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2925
diff
changeset
|
1398 if (HasPlugins()) |
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refactoring access to Orthanc configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
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|
1399 { |
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refactoring access to Orthanc configuration
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
1400 GetPlugins().SignalUpdatedModalities(); |
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refactoring access to Orthanc configuration
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
1401 } |
4767d36679ed
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diff
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|
1402 #endif |
4767d36679ed
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diff
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|
1403 } |
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Sebastien Jodogne <s.jodogne@gmail.com>
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|
1404 |
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Sebastien Jodogne <s.jodogne@gmail.com>
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|
1405 |
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diff
changeset
|
1406 void ServerContext::SignalUpdatedPeers() |
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diff
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|
1407 { |
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
1408 #if ORTHANC_ENABLE_PLUGINS == 1 |
4767d36679ed
refactoring access to Orthanc configuration
Sebastien Jodogne <s.jodogne@gmail.com>
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2925
diff
changeset
|
1409 if (HasPlugins()) |
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
1410 { |
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refactoring access to Orthanc configuration
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
1411 GetPlugins().SignalUpdatedPeers(); |
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
1412 } |
4767d36679ed
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
1413 #endif |
4767d36679ed
refactoring access to Orthanc configuration
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
1414 } |
3660
f159b731c47d
IStorageCommitmentFactory
Sebastien Jodogne <s.jodogne@gmail.com>
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3640
diff
changeset
|
1415 |
f159b731c47d
IStorageCommitmentFactory
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3640
diff
changeset
|
1416 |
f159b731c47d
IStorageCommitmentFactory
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3640
diff
changeset
|
1417 IStorageCommitmentFactory::ILookupHandler* |
f159b731c47d
IStorageCommitmentFactory
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3640
diff
changeset
|
1418 ServerContext::CreateStorageCommitment(const std::string& jobId, |
f159b731c47d
IStorageCommitmentFactory
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3640
diff
changeset
|
1419 const std::string& transactionUid, |
f159b731c47d
IStorageCommitmentFactory
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3640
diff
changeset
|
1420 const std::vector<std::string>& sopClassUids, |
3662
d8371b4302ff
OrthancPluginRegisterStorageCommitmentScpCallback()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3660
diff
changeset
|
1421 const std::vector<std::string>& sopInstanceUids, |
d8371b4302ff
OrthancPluginRegisterStorageCommitmentScpCallback()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3660
diff
changeset
|
1422 const std::string& remoteAet, |
d8371b4302ff
OrthancPluginRegisterStorageCommitmentScpCallback()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3660
diff
changeset
|
1423 const std::string& calledAet) |
3660
f159b731c47d
IStorageCommitmentFactory
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
1424 { |
f159b731c47d
IStorageCommitmentFactory
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1425 #if ORTHANC_ENABLE_PLUGINS == 1 |
f159b731c47d
IStorageCommitmentFactory
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3640
diff
changeset
|
1426 if (HasPlugins()) |
f159b731c47d
IStorageCommitmentFactory
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3640
diff
changeset
|
1427 { |
3662
d8371b4302ff
OrthancPluginRegisterStorageCommitmentScpCallback()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3660
diff
changeset
|
1428 return GetPlugins().CreateStorageCommitment( |
d8371b4302ff
OrthancPluginRegisterStorageCommitmentScpCallback()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3660
diff
changeset
|
1429 jobId, transactionUid, sopClassUids, sopInstanceUids, remoteAet, calledAet); |
3660
f159b731c47d
IStorageCommitmentFactory
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
1430 } |
f159b731c47d
IStorageCommitmentFactory
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3640
diff
changeset
|
1431 #endif |
f159b731c47d
IStorageCommitmentFactory
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1432 |
f159b731c47d
IStorageCommitmentFactory
Sebastien Jodogne <s.jodogne@gmail.com>
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3640
diff
changeset
|
1433 return NULL; |
f159b731c47d
IStorageCommitmentFactory
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3640
diff
changeset
|
1434 } |
3894
8f7ad4989fec
transcoding to uncompressed transfer syntaxes over DICOM protocol is implemented
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3839
diff
changeset
|
1435 |
8f7ad4989fec
transcoding to uncompressed transfer syntaxes over DICOM protocol is implemented
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3839
diff
changeset
|
1436 |
3928
4cdc875510d1
ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3913
diff
changeset
|
1437 ImageAccessor* ServerContext::DecodeDicomFrame(const std::string& publicId, |
4cdc875510d1
ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3913
diff
changeset
|
1438 unsigned int frameIndex) |
4cdc875510d1
ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3913
diff
changeset
|
1439 { |
3931
e6606d3ec892
new configuration option: BuiltinDecoderTranscoderOrder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3930
diff
changeset
|
1440 if (builtinDecoderTranscoderOrder_ == BuiltinDecoderTranscoderOrder_Before) |
e6606d3ec892
new configuration option: BuiltinDecoderTranscoderOrder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3930
diff
changeset
|
1441 { |
e6606d3ec892
new configuration option: BuiltinDecoderTranscoderOrder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3930
diff
changeset
|
1442 // Use Orthanc's built-in decoder, using the cache to speed-up |
e6606d3ec892
new configuration option: BuiltinDecoderTranscoderOrder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3930
diff
changeset
|
1443 // things on multi-frame images |
4265
f9eaf14d3d19
Fix decoding sequence if "BuiltinDecoderTranscoderOrder" is "Before"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4218
diff
changeset
|
1444 |
f9eaf14d3d19
Fix decoding sequence if "BuiltinDecoderTranscoderOrder" is "Before"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4218
diff
changeset
|
1445 std::unique_ptr<ImageAccessor> decoded; |
f9eaf14d3d19
Fix decoding sequence if "BuiltinDecoderTranscoderOrder" is "Before"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4218
diff
changeset
|
1446 try |
f9eaf14d3d19
Fix decoding sequence if "BuiltinDecoderTranscoderOrder" is "Before"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4218
diff
changeset
|
1447 { |
4274 | 1448 ServerContext::DicomCacheLocker locker(*this, publicId); |
4265
f9eaf14d3d19
Fix decoding sequence if "BuiltinDecoderTranscoderOrder" is "Before"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4218
diff
changeset
|
1449 decoded.reset(locker.GetDicom().DecodeFrame(frameIndex)); |
f9eaf14d3d19
Fix decoding sequence if "BuiltinDecoderTranscoderOrder" is "Before"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4218
diff
changeset
|
1450 } |
f9eaf14d3d19
Fix decoding sequence if "BuiltinDecoderTranscoderOrder" is "Before"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4218
diff
changeset
|
1451 catch (OrthancException& e) |
f9eaf14d3d19
Fix decoding sequence if "BuiltinDecoderTranscoderOrder" is "Before"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4218
diff
changeset
|
1452 { |
f9eaf14d3d19
Fix decoding sequence if "BuiltinDecoderTranscoderOrder" is "Before"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4218
diff
changeset
|
1453 } |
f9eaf14d3d19
Fix decoding sequence if "BuiltinDecoderTranscoderOrder" is "Before"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4218
diff
changeset
|
1454 |
3931
e6606d3ec892
new configuration option: BuiltinDecoderTranscoderOrder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3930
diff
changeset
|
1455 if (decoded.get() != NULL) |
e6606d3ec892
new configuration option: BuiltinDecoderTranscoderOrder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3930
diff
changeset
|
1456 { |
e6606d3ec892
new configuration option: BuiltinDecoderTranscoderOrder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3930
diff
changeset
|
1457 return decoded.release(); |
e6606d3ec892
new configuration option: BuiltinDecoderTranscoderOrder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3930
diff
changeset
|
1458 } |
e6606d3ec892
new configuration option: BuiltinDecoderTranscoderOrder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3930
diff
changeset
|
1459 } |
3928
4cdc875510d1
ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3913
diff
changeset
|
1460 |
4cdc875510d1
ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3913
diff
changeset
|
1461 #if ORTHANC_ENABLE_PLUGINS == 1 |
4cdc875510d1
ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3913
diff
changeset
|
1462 if (HasPlugins() && |
4cdc875510d1
ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3913
diff
changeset
|
1463 GetPlugins().HasCustomImageDecoder()) |
4cdc875510d1
ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3913
diff
changeset
|
1464 { |
4cdc875510d1
ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3913
diff
changeset
|
1465 // TODO: Store the raw buffer in the DicomCacheLocker |
4cdc875510d1
ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3913
diff
changeset
|
1466 std::string dicomContent; |
4cdc875510d1
ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3913
diff
changeset
|
1467 ReadDicom(dicomContent, publicId); |
4265
f9eaf14d3d19
Fix decoding sequence if "BuiltinDecoderTranscoderOrder" is "Before"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4218
diff
changeset
|
1468 |
f9eaf14d3d19
Fix decoding sequence if "BuiltinDecoderTranscoderOrder" is "Before"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4218
diff
changeset
|
1469 std::unique_ptr<ImageAccessor> decoded; |
f9eaf14d3d19
Fix decoding sequence if "BuiltinDecoderTranscoderOrder" is "Before"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4218
diff
changeset
|
1470 try |
f9eaf14d3d19
Fix decoding sequence if "BuiltinDecoderTranscoderOrder" is "Before"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4218
diff
changeset
|
1471 { |
f9eaf14d3d19
Fix decoding sequence if "BuiltinDecoderTranscoderOrder" is "Before"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4218
diff
changeset
|
1472 decoded.reset(GetPlugins().Decode(dicomContent.c_str(), dicomContent.size(), frameIndex)); |
f9eaf14d3d19
Fix decoding sequence if "BuiltinDecoderTranscoderOrder" is "Before"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4218
diff
changeset
|
1473 } |
f9eaf14d3d19
Fix decoding sequence if "BuiltinDecoderTranscoderOrder" is "Before"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4218
diff
changeset
|
1474 catch (OrthancException& e) |
f9eaf14d3d19
Fix decoding sequence if "BuiltinDecoderTranscoderOrder" is "Before"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4218
diff
changeset
|
1475 { |
f9eaf14d3d19
Fix decoding sequence if "BuiltinDecoderTranscoderOrder" is "Before"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4218
diff
changeset
|
1476 } |
f9eaf14d3d19
Fix decoding sequence if "BuiltinDecoderTranscoderOrder" is "Before"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4218
diff
changeset
|
1477 |
3928
4cdc875510d1
ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
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3913
diff
changeset
|
1478 if (decoded.get() != NULL) |
4cdc875510d1
ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1479 { |
4cdc875510d1
ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3913
diff
changeset
|
1480 return decoded.release(); |
4cdc875510d1
ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1481 } |
3931
e6606d3ec892
new configuration option: BuiltinDecoderTranscoderOrder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3930
diff
changeset
|
1482 else if (builtinDecoderTranscoderOrder_ == BuiltinDecoderTranscoderOrder_After) |
3928
4cdc875510d1
ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
1483 { |
4cdc875510d1
ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1484 LOG(INFO) << "The installed image decoding plugins cannot handle an image, " |
3930
b99acc213937
transcoder plugins and GDCM transcoding are working
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3928
diff
changeset
|
1485 << "fallback to the built-in DCMTK decoder"; |
3928
4cdc875510d1
ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1486 } |
4cdc875510d1
ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1487 } |
4cdc875510d1
ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1488 #endif |
4cdc875510d1
ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
1489 |
3931
e6606d3ec892
new configuration option: BuiltinDecoderTranscoderOrder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3930
diff
changeset
|
1490 if (builtinDecoderTranscoderOrder_ == BuiltinDecoderTranscoderOrder_After) |
3928
4cdc875510d1
ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
1491 { |
4cdc875510d1
ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1492 ServerContext::DicomCacheLocker locker(*this, publicId); |
4203
4d42408da117
improving const-correctness in ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4196
diff
changeset
|
1493 return locker.GetDicom().DecodeFrame(frameIndex); |
3928
4cdc875510d1
ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1494 } |
3931
e6606d3ec892
new configuration option: BuiltinDecoderTranscoderOrder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3930
diff
changeset
|
1495 else |
e6606d3ec892
new configuration option: BuiltinDecoderTranscoderOrder
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
1496 { |
e6606d3ec892
new configuration option: BuiltinDecoderTranscoderOrder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3930
diff
changeset
|
1497 return NULL; // Built-in decoder is disabled |
e6606d3ec892
new configuration option: BuiltinDecoderTranscoderOrder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3930
diff
changeset
|
1498 } |
3928
4cdc875510d1
ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1499 } |
4cdc875510d1
ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1500 |
4cdc875510d1
ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1501 |
4cdc875510d1
ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3913
diff
changeset
|
1502 ImageAccessor* ServerContext::DecodeDicomFrame(const DicomInstanceToStore& dicom, |
4cdc875510d1
ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3913
diff
changeset
|
1503 unsigned int frameIndex) |
4cdc875510d1
ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3913
diff
changeset
|
1504 { |
3931
e6606d3ec892
new configuration option: BuiltinDecoderTranscoderOrder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3930
diff
changeset
|
1505 if (builtinDecoderTranscoderOrder_ == BuiltinDecoderTranscoderOrder_Before) |
e6606d3ec892
new configuration option: BuiltinDecoderTranscoderOrder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3930
diff
changeset
|
1506 { |
4265
f9eaf14d3d19
Fix decoding sequence if "BuiltinDecoderTranscoderOrder" is "Before"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4218
diff
changeset
|
1507 std::unique_ptr<ImageAccessor> decoded; |
f9eaf14d3d19
Fix decoding sequence if "BuiltinDecoderTranscoderOrder" is "Before"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4218
diff
changeset
|
1508 try |
f9eaf14d3d19
Fix decoding sequence if "BuiltinDecoderTranscoderOrder" is "Before"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4218
diff
changeset
|
1509 { |
f9eaf14d3d19
Fix decoding sequence if "BuiltinDecoderTranscoderOrder" is "Before"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4218
diff
changeset
|
1510 decoded.reset(dicom.GetParsedDicomFile().DecodeFrame(frameIndex)); |
f9eaf14d3d19
Fix decoding sequence if "BuiltinDecoderTranscoderOrder" is "Before"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4218
diff
changeset
|
1511 } |
f9eaf14d3d19
Fix decoding sequence if "BuiltinDecoderTranscoderOrder" is "Before"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4218
diff
changeset
|
1512 catch (OrthancException& e) |
f9eaf14d3d19
Fix decoding sequence if "BuiltinDecoderTranscoderOrder" is "Before"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4218
diff
changeset
|
1513 { |
f9eaf14d3d19
Fix decoding sequence if "BuiltinDecoderTranscoderOrder" is "Before"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4218
diff
changeset
|
1514 } |
f9eaf14d3d19
Fix decoding sequence if "BuiltinDecoderTranscoderOrder" is "Before"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4218
diff
changeset
|
1515 |
3931
e6606d3ec892
new configuration option: BuiltinDecoderTranscoderOrder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3930
diff
changeset
|
1516 if (decoded.get() != NULL) |
e6606d3ec892
new configuration option: BuiltinDecoderTranscoderOrder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3930
diff
changeset
|
1517 { |
e6606d3ec892
new configuration option: BuiltinDecoderTranscoderOrder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3930
diff
changeset
|
1518 return decoded.release(); |
e6606d3ec892
new configuration option: BuiltinDecoderTranscoderOrder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3930
diff
changeset
|
1519 } |
e6606d3ec892
new configuration option: BuiltinDecoderTranscoderOrder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3930
diff
changeset
|
1520 } |
3928
4cdc875510d1
ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3913
diff
changeset
|
1521 |
4cdc875510d1
ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3913
diff
changeset
|
1522 #if ORTHANC_ENABLE_PLUGINS == 1 |
4cdc875510d1
ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3913
diff
changeset
|
1523 if (HasPlugins() && |
4cdc875510d1
ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3913
diff
changeset
|
1524 GetPlugins().HasCustomImageDecoder()) |
4cdc875510d1
ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3913
diff
changeset
|
1525 { |
4265
f9eaf14d3d19
Fix decoding sequence if "BuiltinDecoderTranscoderOrder" is "Before"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4218
diff
changeset
|
1526 std::unique_ptr<ImageAccessor> decoded; |
f9eaf14d3d19
Fix decoding sequence if "BuiltinDecoderTranscoderOrder" is "Before"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4218
diff
changeset
|
1527 try |
f9eaf14d3d19
Fix decoding sequence if "BuiltinDecoderTranscoderOrder" is "Before"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4218
diff
changeset
|
1528 { |
f9eaf14d3d19
Fix decoding sequence if "BuiltinDecoderTranscoderOrder" is "Before"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4218
diff
changeset
|
1529 decoded.reset(GetPlugins().Decode(dicom.GetBufferData(), dicom.GetBufferSize(), frameIndex)); |
f9eaf14d3d19
Fix decoding sequence if "BuiltinDecoderTranscoderOrder" is "Before"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4218
diff
changeset
|
1530 } |
f9eaf14d3d19
Fix decoding sequence if "BuiltinDecoderTranscoderOrder" is "Before"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4218
diff
changeset
|
1531 catch (OrthancException& e) |
f9eaf14d3d19
Fix decoding sequence if "BuiltinDecoderTranscoderOrder" is "Before"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4218
diff
changeset
|
1532 { |
f9eaf14d3d19
Fix decoding sequence if "BuiltinDecoderTranscoderOrder" is "Before"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4218
diff
changeset
|
1533 } |
f9eaf14d3d19
Fix decoding sequence if "BuiltinDecoderTranscoderOrder" is "Before"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4218
diff
changeset
|
1534 |
3928
4cdc875510d1
ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3913
diff
changeset
|
1535 if (decoded.get() != NULL) |
4cdc875510d1
ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3913
diff
changeset
|
1536 { |
4cdc875510d1
ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3913
diff
changeset
|
1537 return decoded.release(); |
4cdc875510d1
ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3913
diff
changeset
|
1538 } |
3931
e6606d3ec892
new configuration option: BuiltinDecoderTranscoderOrder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3930
diff
changeset
|
1539 else if (builtinDecoderTranscoderOrder_ == BuiltinDecoderTranscoderOrder_After) |
3928
4cdc875510d1
ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3913
diff
changeset
|
1540 { |
4cdc875510d1
ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3913
diff
changeset
|
1541 LOG(INFO) << "The installed image decoding plugins cannot handle an image, " |
3930
b99acc213937
transcoder plugins and GDCM transcoding are working
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3928
diff
changeset
|
1542 << "fallback to the built-in DCMTK decoder"; |
3928
4cdc875510d1
ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3913
diff
changeset
|
1543 } |
4cdc875510d1
ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3913
diff
changeset
|
1544 } |
4cdc875510d1
ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3913
diff
changeset
|
1545 #endif |
4cdc875510d1
ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3913
diff
changeset
|
1546 |
3931
e6606d3ec892
new configuration option: BuiltinDecoderTranscoderOrder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3930
diff
changeset
|
1547 if (builtinDecoderTranscoderOrder_ == BuiltinDecoderTranscoderOrder_After) |
e6606d3ec892
new configuration option: BuiltinDecoderTranscoderOrder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3930
diff
changeset
|
1548 { |
4203
4d42408da117
improving const-correctness in ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4196
diff
changeset
|
1549 return dicom.GetParsedDicomFile().DecodeFrame(frameIndex); |
3931
e6606d3ec892
new configuration option: BuiltinDecoderTranscoderOrder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3930
diff
changeset
|
1550 } |
e6606d3ec892
new configuration option: BuiltinDecoderTranscoderOrder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3930
diff
changeset
|
1551 else |
e6606d3ec892
new configuration option: BuiltinDecoderTranscoderOrder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3930
diff
changeset
|
1552 { |
e6606d3ec892
new configuration option: BuiltinDecoderTranscoderOrder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3930
diff
changeset
|
1553 return NULL; |
e6606d3ec892
new configuration option: BuiltinDecoderTranscoderOrder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3930
diff
changeset
|
1554 } |
3928
4cdc875510d1
ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3913
diff
changeset
|
1555 } |
4cdc875510d1
ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3913
diff
changeset
|
1556 |
4cdc875510d1
ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3913
diff
changeset
|
1557 |
3980
e42f5445d20d
Fix decoding of DICOM images for plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3951
diff
changeset
|
1558 ImageAccessor* ServerContext::DecodeDicomFrame(const void* dicom, |
e42f5445d20d
Fix decoding of DICOM images for plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3951
diff
changeset
|
1559 size_t size, |
e42f5445d20d
Fix decoding of DICOM images for plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3951
diff
changeset
|
1560 unsigned int frameIndex) |
e42f5445d20d
Fix decoding of DICOM images for plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3951
diff
changeset
|
1561 { |
e42f5445d20d
Fix decoding of DICOM images for plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3951
diff
changeset
|
1562 DicomInstanceToStore instance; |
e42f5445d20d
Fix decoding of DICOM images for plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3951
diff
changeset
|
1563 instance.SetBuffer(dicom, size); |
e42f5445d20d
Fix decoding of DICOM images for plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3951
diff
changeset
|
1564 return DecodeDicomFrame(instance, frameIndex); |
e42f5445d20d
Fix decoding of DICOM images for plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3951
diff
changeset
|
1565 } |
e42f5445d20d
Fix decoding of DICOM images for plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3951
diff
changeset
|
1566 |
e42f5445d20d
Fix decoding of DICOM images for plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3951
diff
changeset
|
1567 |
3894
8f7ad4989fec
transcoding to uncompressed transfer syntaxes over DICOM protocol is implemented
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3839
diff
changeset
|
1568 void ServerContext::StoreWithTranscoding(std::string& sopClassUid, |
8f7ad4989fec
transcoding to uncompressed transfer syntaxes over DICOM protocol is implemented
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3839
diff
changeset
|
1569 std::string& sopInstanceUid, |
8f7ad4989fec
transcoding to uncompressed transfer syntaxes over DICOM protocol is implemented
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3839
diff
changeset
|
1570 DicomStoreUserConnection& connection, |
8f7ad4989fec
transcoding to uncompressed transfer syntaxes over DICOM protocol is implemented
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3839
diff
changeset
|
1571 const std::string& dicom, |
8f7ad4989fec
transcoding to uncompressed transfer syntaxes over DICOM protocol is implemented
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3839
diff
changeset
|
1572 bool hasMoveOriginator, |
8f7ad4989fec
transcoding to uncompressed transfer syntaxes over DICOM protocol is implemented
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3839
diff
changeset
|
1573 const std::string& moveOriginatorAet, |
8f7ad4989fec
transcoding to uncompressed transfer syntaxes over DICOM protocol is implemented
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3839
diff
changeset
|
1574 uint16_t moveOriginatorId) |
8f7ad4989fec
transcoding to uncompressed transfer syntaxes over DICOM protocol is implemented
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3839
diff
changeset
|
1575 { |
8f7ad4989fec
transcoding to uncompressed transfer syntaxes over DICOM protocol is implemented
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3839
diff
changeset
|
1576 const void* data = dicom.empty() ? NULL : dicom.c_str(); |
8f7ad4989fec
transcoding to uncompressed transfer syntaxes over DICOM protocol is implemented
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3839
diff
changeset
|
1577 |
3911
0ef7f4528be2
renamed option TranscodingEnabled to TranscodeDicomProtocol
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3910
diff
changeset
|
1578 if (!transcodeDicomProtocol_ || |
3894
8f7ad4989fec
transcoding to uncompressed transfer syntaxes over DICOM protocol is implemented
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3839
diff
changeset
|
1579 !connection.GetParameters().GetRemoteModality().IsTranscodingAllowed()) |
8f7ad4989fec
transcoding to uncompressed transfer syntaxes over DICOM protocol is implemented
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3839
diff
changeset
|
1580 { |
8f7ad4989fec
transcoding to uncompressed transfer syntaxes over DICOM protocol is implemented
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3839
diff
changeset
|
1581 connection.Store(sopClassUid, sopInstanceUid, data, dicom.size(), |
8f7ad4989fec
transcoding to uncompressed transfer syntaxes over DICOM protocol is implemented
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3839
diff
changeset
|
1582 hasMoveOriginator, moveOriginatorAet, moveOriginatorId); |
8f7ad4989fec
transcoding to uncompressed transfer syntaxes over DICOM protocol is implemented
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3839
diff
changeset
|
1583 } |
8f7ad4989fec
transcoding to uncompressed transfer syntaxes over DICOM protocol is implemented
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3839
diff
changeset
|
1584 else |
8f7ad4989fec
transcoding to uncompressed transfer syntaxes over DICOM protocol is implemented
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3839
diff
changeset
|
1585 { |
3930
b99acc213937
transcoder plugins and GDCM transcoding are working
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3928
diff
changeset
|
1586 connection.Transcode(sopClassUid, sopInstanceUid, *this, data, dicom.size(), |
3912
7610af1532c3
prototyping automated transcoding of incoming DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3911
diff
changeset
|
1587 hasMoveOriginator, moveOriginatorAet, moveOriginatorId); |
3894
8f7ad4989fec
transcoding to uncompressed transfer syntaxes over DICOM protocol is implemented
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3839
diff
changeset
|
1588 } |
8f7ad4989fec
transcoding to uncompressed transfer syntaxes over DICOM protocol is implemented
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3839
diff
changeset
|
1589 } |
3930
b99acc213937
transcoder plugins and GDCM transcoding are working
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3928
diff
changeset
|
1590 |
b99acc213937
transcoder plugins and GDCM transcoding are working
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3928
diff
changeset
|
1591 |
3944
aae045f802f4
preparing simplified interface for IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3941
diff
changeset
|
1592 bool ServerContext::Transcode(DicomImage& target, |
aae045f802f4
preparing simplified interface for IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3941
diff
changeset
|
1593 DicomImage& source /* in, "GetParsed()" possibly modified */, |
aae045f802f4
preparing simplified interface for IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3941
diff
changeset
|
1594 const std::set<DicomTransferSyntax>& allowedSyntaxes, |
aae045f802f4
preparing simplified interface for IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3941
diff
changeset
|
1595 bool allowNewSopInstanceUid) |
aae045f802f4
preparing simplified interface for IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3941
diff
changeset
|
1596 { |
aae045f802f4
preparing simplified interface for IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3941
diff
changeset
|
1597 if (builtinDecoderTranscoderOrder_ == BuiltinDecoderTranscoderOrder_Before) |
aae045f802f4
preparing simplified interface for IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3941
diff
changeset
|
1598 { |
3951
5fe8c6d3212e
removed useless information "hasSopInstanceUidChanged"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3947
diff
changeset
|
1599 if (dcmtkTranscoder_->Transcode(target, source, allowedSyntaxes, allowNewSopInstanceUid)) |
3944
aae045f802f4
preparing simplified interface for IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3941
diff
changeset
|
1600 { |
aae045f802f4
preparing simplified interface for IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3941
diff
changeset
|
1601 return true; |
aae045f802f4
preparing simplified interface for IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3941
diff
changeset
|
1602 } |
aae045f802f4
preparing simplified interface for IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3941
diff
changeset
|
1603 } |
aae045f802f4
preparing simplified interface for IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3941
diff
changeset
|
1604 |
aae045f802f4
preparing simplified interface for IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3941
diff
changeset
|
1605 #if ORTHANC_ENABLE_PLUGINS == 1 |
aae045f802f4
preparing simplified interface for IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3941
diff
changeset
|
1606 if (HasPlugins() && |
aae045f802f4
preparing simplified interface for IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3941
diff
changeset
|
1607 GetPlugins().HasCustomTranscoder()) |
aae045f802f4
preparing simplified interface for IDicomTranscoder
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parents:
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1608 { |
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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1609 if (GetPlugins().Transcode(target, source, allowedSyntaxes, allowNewSopInstanceUid)) |
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parents:
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1610 { |
aae045f802f4
preparing simplified interface for IDicomTranscoder
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parents:
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1611 return true; |
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preparing simplified interface for IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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1612 } |
aae045f802f4
preparing simplified interface for IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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1613 else if (builtinDecoderTranscoderOrder_ == BuiltinDecoderTranscoderOrder_After) |
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preparing simplified interface for IDicomTranscoder
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parents:
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1614 { |
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preparing simplified interface for IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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1615 LOG(INFO) << "The installed transcoding plugins cannot handle an image, " |
aae045f802f4
preparing simplified interface for IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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1616 << "fallback to the built-in DCMTK transcoder"; |
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preparing simplified interface for IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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1617 } |
aae045f802f4
preparing simplified interface for IDicomTranscoder
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parents:
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1618 } |
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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1619 #endif |
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parents:
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1620 |
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preparing simplified interface for IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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1621 if (builtinDecoderTranscoderOrder_ == BuiltinDecoderTranscoderOrder_After) |
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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1622 { |
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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1623 return dcmtkTranscoder_->Transcode(target, source, allowedSyntaxes, allowNewSopInstanceUid); |
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parents:
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1624 } |
aae045f802f4
preparing simplified interface for IDicomTranscoder
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parents:
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1625 else |
aae045f802f4
preparing simplified interface for IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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1626 { |
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parents:
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1627 return false; |
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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1628 } |
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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1629 } |
224 | 1630 } |