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annotate OrthancServer/Sources/Database/StatelessDatabaseOperations.h @ 5039:28db9663fc2d

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DicomSequencesMap + fix unit tests
author Alain Mazy <am@osimis.io>
date Mon, 27 Jun 2022 10:48:46 +0200
parents 877bc3b96476
children ec5c203a97ea
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1 /**
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2 * Orthanc - A Lightweight, RESTful DICOM Store
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3 * Copyright (C) 2012-2016 Sebastien Jodogne, Medical Physics
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4 * Department, University Hospital of Liege, Belgium
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5 * Copyright (C) 2017-2022 Osimis S.A., Belgium
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6 * Copyright (C) 2021-2022 Sebastien Jodogne, ICTEAM UCLouvain, Belgium
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7 *
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8 * This program is free software: you can redistribute it and/or
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9 * modify it under the terms of the GNU General Public License as
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10 * published by the Free Software Foundation, either version 3 of the
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11 * License, or (at your option) any later version.
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12 *
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13 * This program is distributed in the hope that it will be useful, but
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14 * WITHOUT ANY WARRANTY; without even the implied warranty of
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15 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
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16 * General Public License for more details.
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17 *
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18 * You should have received a copy of the GNU General Public License
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19 * along with this program. If not, see <http://www.gnu.org/licenses/>.
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20 **/
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21
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22
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23 #pragma once
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24
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25 #include "../../../OrthancFramework/Sources/DicomFormat/DicomMap.h"
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26
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27 #include "IDatabaseWrapper.h"
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28 #include "../DicomInstanceOrigin.h"
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29
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30 #include <boost/shared_ptr.hpp>
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31 #include <boost/thread/shared_mutex.hpp>
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32
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33
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34 namespace Orthanc
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35 {
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36 class DatabaseLookup;
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37 class ParsedDicomFile;
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38 struct ServerIndexChange;
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39
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40 /*
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41 * contains a map of dicom sequences where:
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42 * the key is a DicomTag
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43 * the sequence is serialized in Json "full" format
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44 */
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45 struct DicomSequencesMap : public boost::noncopyable
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46 {
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47 std::map<DicomTag, Json::Value> sequences_;
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48
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49 void Deserialize(const Json::Value& serialized);
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50 void Serialize(Json::Value& target, const std::set<DicomTag>& tags) const;
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51 void FromDicomAsJson(const Json::Value& dicomAsJson, const std::set<DicomTag>& tags);
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52 void ToJson(Json::Value& target, DicomToJsonFormat format) const;
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53
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54 size_t GetSize() const
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55 {
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56 return sequences_.size();
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57 }
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58 };
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59
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60 struct ExpandedResource : public boost::noncopyable
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61 {
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62 std::string id_;
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63 DicomMap tags_; // all tags from DB (only leaf tags, not sequences !)
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64 DicomSequencesMap sequences_; // the requested sequences
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65 std::string mainDicomTagsSignature_;
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66 std::string parentId_;
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67 std::list<std::string> childrenIds_;
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68 std::map<MetadataType, std::string> metadata_;
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69 ResourceType type_;
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70 std::string anonymizedFrom_;
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71 std::string modifiedFrom_;
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72 std::string lastUpdate_;
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73 std::set<DicomTag> missingRequestedTags_;
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74
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75 // for patients/studies/series
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76 bool isStable_;
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77
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78 // for series only
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79 int expectedNumberOfInstances_;
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80 std::string status_;
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81
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82 // for instances only
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83 size_t fileSize_;
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84 std::string fileUuid_;
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85 int indexInSeries_;
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86 };
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87
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88 enum ExpandResourceDbFlags
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89 {
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90 ExpandResourceDbFlags_None = 0,
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91 ExpandResourceDbFlags_IncludeMetadata = (1 << 0),
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92 ExpandResourceDbFlags_IncludeChildren = (1 << 1),
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93 ExpandResourceDbFlags_IncludeMainDicomTags = (1 << 2),
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94
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95 ExpandResourceDbFlags_Default = (ExpandResourceDbFlags_IncludeMetadata |
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96 ExpandResourceDbFlags_IncludeChildren |
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97 ExpandResourceDbFlags_IncludeMainDicomTags)
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98 };
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99
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100 class StatelessDatabaseOperations : public boost::noncopyable
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101 {
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102 public:
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103 typedef std::list<FileInfo> Attachments;
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104 typedef std::map<std::pair<ResourceType, MetadataType>, std::string> MetadataMap;
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105
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106 class ITransactionContext : public IDatabaseListener
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107 {
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108 public:
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109 virtual ~ITransactionContext()
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110 {
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111 }
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112
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113 virtual void Commit() = 0;
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114
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115 virtual int64_t GetCompressedSizeDelta() = 0;
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116
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117 virtual bool IsUnstableResource(int64_t id) = 0;
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118
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119 virtual bool LookupRemainingLevel(std::string& remainingPublicId /* out */,
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120 ResourceType& remainingLevel /* out */) = 0;
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121
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122 virtual void MarkAsUnstable(int64_t id,
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123 Orthanc::ResourceType type,
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124 const std::string& publicId) = 0;
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125
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126 virtual void SignalAttachmentsAdded(uint64_t compressedSize) = 0;
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127
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128 virtual void SignalChange(const ServerIndexChange& change) = 0;
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129 };
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130
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131
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132 class ITransactionContextFactory : public boost::noncopyable
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133 {
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134 public:
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135 virtual ~ITransactionContextFactory()
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136 {
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137 }
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138
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139 // WARNING: This method can be invoked from several threads concurrently
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140 virtual ITransactionContext* Create() = 0;
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141 };
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142
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143
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144 class ReadOnlyTransaction : public boost::noncopyable
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145 {
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146 private:
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147 ITransactionContext& context_;
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148
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149 protected:
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150 IDatabaseWrapper::ITransaction& transaction_;
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151
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152 public:
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153 explicit ReadOnlyTransaction(IDatabaseWrapper::ITransaction& transaction,
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154 ITransactionContext& context) :
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155 context_(context),
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156 transaction_(transaction)
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157 {
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158 }
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159
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160 ITransactionContext& GetTransactionContext()
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161 {
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162 return context_;
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163 }
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164
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165 /**
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166 * Higher-level constructions
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167 **/
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168
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169 SeriesStatus GetSeriesStatus(int64_t id,
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170 int64_t expectedNumberOfInstances);
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171
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172
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173 /**
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174 * Read-only methods from "IDatabaseWrapper"
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175 **/
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176
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177 void ApplyLookupResources(std::list<std::string>& resourcesId,
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178 std::list<std::string>* instancesId, // Can be NULL if not needed
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179 const std::vector<DatabaseConstraint>& lookup,
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180 ResourceType queryLevel,
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181 size_t limit)
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182 {
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183 return transaction_.ApplyLookupResources(resourcesId, instancesId, lookup, queryLevel, limit);
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184 }
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185
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186 void GetAllMetadata(std::map<MetadataType, std::string>& target,
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187 int64_t id)
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188 {
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189 transaction_.GetAllMetadata(target, id);
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190 }
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191
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192 void GetAllPublicIds(std::list<std::string>& target,
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193 ResourceType resourceType)
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194 {
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195 return transaction_.GetAllPublicIds(target, resourceType);
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196 }
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197
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198 void GetAllPublicIds(std::list<std::string>& target,
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199 ResourceType resourceType,
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200 size_t since,
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201 size_t limit)
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202 {
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203 return transaction_.GetAllPublicIds(target, resourceType, since, limit);
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204 }
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205
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206 void GetChanges(std::list<ServerIndexChange>& target /*out*/,
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207 bool& done /*out*/,
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208 int64_t since,
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209 uint32_t maxResults)
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210 {
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211 transaction_.GetChanges(target, done, since, maxResults);
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212 }
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213
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214 void GetChildrenInternalId(std::list<int64_t>& target,
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215 int64_t id)
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216 {
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217 transaction_.GetChildrenInternalId(target, id);
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218 }
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219
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220 void GetChildrenPublicId(std::list<std::string>& target,
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221 int64_t id)
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222 {
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223 transaction_.GetChildrenPublicId(target, id);
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224 }
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225
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226 void GetExportedResources(std::list<ExportedResource>& target /*out*/,
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227 bool& done /*out*/,
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228 int64_t since,
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229 uint32_t maxResults)
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230 {
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231 return transaction_.GetExportedResources(target, done, since, maxResults);
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232 }
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233
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234 void GetLastChange(std::list<ServerIndexChange>& target /*out*/)
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235 {
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236 transaction_.GetLastChange(target);
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237 }
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238
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239 void GetLastExportedResource(std::list<ExportedResource>& target /*out*/)
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240 {
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241 return transaction_.GetLastExportedResource(target);
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242 }
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243
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244 int64_t GetLastChangeIndex()
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245 {
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246 return transaction_.GetLastChangeIndex();
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247 }
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248
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249 void GetMainDicomTags(DicomMap& map,
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250 int64_t id)
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251 {
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252 transaction_.GetMainDicomTags(map, id);
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253 }
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254
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255 std::string GetPublicId(int64_t resourceId)
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256 {
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257 return transaction_.GetPublicId(resourceId);
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258 }
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259
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260 uint64_t GetResourcesCount(ResourceType resourceType)
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261 {
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262 return transaction_.GetResourcesCount(resourceType);
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263 }
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264
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265 ResourceType GetResourceType(int64_t resourceId)
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266 {
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267 return transaction_.GetResourceType(resourceId);
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268 }
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269
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270 uint64_t GetTotalCompressedSize()
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271 {
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272 return transaction_.GetTotalCompressedSize();
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273 }
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274
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275 uint64_t GetTotalUncompressedSize()
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276 {
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277 return transaction_.GetTotalUncompressedSize();
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278 }
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279
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280 bool IsProtectedPatient(int64_t internalId)
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281 {
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282 return transaction_.IsProtectedPatient(internalId);
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283 }
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284
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285 void ListAvailableAttachments(std::set<FileContentType>& target,
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286 int64_t id)
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287 {
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288 transaction_.ListAvailableAttachments(target, id);
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289 }
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290
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291 bool LookupAttachment(FileInfo& attachment,
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292 int64_t& revision,
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293 int64_t id,
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294 FileContentType contentType)
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295 {
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296 return transaction_.LookupAttachment(attachment, revision, id, contentType);
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297 }
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298
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299 bool LookupGlobalProperty(std::string& target,
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300 GlobalProperty property,
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301 bool shared)
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302 {
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303 return transaction_.LookupGlobalProperty(target, property, shared);
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304 }
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305
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306 bool LookupMetadata(std::string& target,
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diff changeset
307 int64_t& revision,
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308 int64_t id,
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diff changeset
309 MetadataType type)
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310 {
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diff changeset
311 return transaction_.LookupMetadata(target, revision, id, type);
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312 }
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313
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314 bool LookupParent(int64_t& parentId,
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315 int64_t resourceId)
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diff changeset
316 {
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diff changeset
317 return transaction_.LookupParent(parentId, resourceId);
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318 }
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319
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diff changeset
320 bool LookupResource(int64_t& id,
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diff changeset
321 ResourceType& type,
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diff changeset
322 const std::string& publicId)
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diff changeset
323 {
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diff changeset
324 return transaction_.LookupResource(id, type, publicId);
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diff changeset
325 }
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parents:
diff changeset
326
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diff changeset
327 bool LookupResourceAndParent(int64_t& id,
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parents:
diff changeset
328 ResourceType& type,
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diff changeset
329 std::string& parentPublicId,
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
330 const std::string& publicId)
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parents:
diff changeset
331 {
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parents: 4589
diff changeset
332 return transaction_.LookupResourceAndParent(id, type, parentPublicId, publicId);
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diff changeset
333 }
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diff changeset
334 };
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diff changeset
335
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diff changeset
336
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diff changeset
337 class ReadWriteTransaction : public ReadOnlyTransaction
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diff changeset
338 {
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diff changeset
339 public:
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parents: 4589
diff changeset
340 ReadWriteTransaction(IDatabaseWrapper::ITransaction& transaction,
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diff changeset
341 ITransactionContext& context) :
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parents: 4589
diff changeset
342 ReadOnlyTransaction(transaction, context)
4586
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diff changeset
343 {
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diff changeset
344 }
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diff changeset
345
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diff changeset
346 void AddAttachment(int64_t id,
4627
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diff changeset
347 const FileInfo& attachment,
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diff changeset
348 int64_t revision)
4586
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diff changeset
349 {
4627
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diff changeset
350 transaction_.AddAttachment(id, attachment, revision);
4586
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diff changeset
351 }
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diff changeset
352
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parents:
diff changeset
353 void ClearChanges()
1d96fe7e054e taking StatelessDatabaseOperations out of ServerIndex
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diff changeset
354 {
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diff changeset
355 transaction_.ClearChanges();
4586
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diff changeset
356 }
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parents:
diff changeset
357
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
358 void ClearExportedResources()
1d96fe7e054e taking StatelessDatabaseOperations out of ServerIndex
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
359 {
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diff changeset
360 transaction_.ClearExportedResources();
4586
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parents:
diff changeset
361 }
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parents:
diff changeset
362
1d96fe7e054e taking StatelessDatabaseOperations out of ServerIndex
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parents:
diff changeset
363 void ClearMainDicomTags(int64_t id)
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
364 {
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parents: 4589
diff changeset
365 return transaction_.ClearMainDicomTags(id);
4586
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parents:
diff changeset
366 }
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parents:
diff changeset
367
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parents:
diff changeset
368 bool CreateInstance(IDatabaseWrapper::CreateInstanceResult& result, /* out */
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parents:
diff changeset
369 int64_t& instanceId, /* out */
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parents:
diff changeset
370 const std::string& patient,
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
371 const std::string& study,
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
372 const std::string& series,
1d96fe7e054e taking StatelessDatabaseOperations out of ServerIndex
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parents:
diff changeset
373 const std::string& instance)
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parents:
diff changeset
374 {
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parents: 4589
diff changeset
375 return transaction_.CreateInstance(result, instanceId, patient, study, series, instance);
4586
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parents:
diff changeset
376 }
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parents:
diff changeset
377
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
378 void DeleteAttachment(int64_t id,
1d96fe7e054e taking StatelessDatabaseOperations out of ServerIndex
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
379 FileContentType attachment)
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
380 {
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diff changeset
381 return transaction_.DeleteAttachment(id, attachment);
4586
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parents:
diff changeset
382 }
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parents:
diff changeset
383
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
384 void DeleteMetadata(int64_t id,
1d96fe7e054e taking StatelessDatabaseOperations out of ServerIndex
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
385 MetadataType type)
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
386 {
4591
ff8170d17d90 moving all accesses to databases from IDatabaseWrapper to ITransaction
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4589
diff changeset
387 transaction_.DeleteMetadata(id, type);
4586
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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388 }
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
389
1d96fe7e054e taking StatelessDatabaseOperations out of ServerIndex
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
390 void DeleteResource(int64_t id)
1d96fe7e054e taking StatelessDatabaseOperations out of ServerIndex
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
391 {
4591
ff8170d17d90 moving all accesses to databases from IDatabaseWrapper to ITransaction
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4589
diff changeset
392 transaction_.DeleteResource(id);
4586
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
393 }
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
394
1d96fe7e054e taking StatelessDatabaseOperations out of ServerIndex
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
395 void LogChange(int64_t internalId,
1d96fe7e054e taking StatelessDatabaseOperations out of ServerIndex
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
396 ChangeType changeType,
1d96fe7e054e taking StatelessDatabaseOperations out of ServerIndex
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
397 ResourceType resourceType,
1d96fe7e054e taking StatelessDatabaseOperations out of ServerIndex
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
398 const std::string& publicId);
1d96fe7e054e taking StatelessDatabaseOperations out of ServerIndex
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
399
1d96fe7e054e taking StatelessDatabaseOperations out of ServerIndex
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
400 void LogExportedResource(const ExportedResource& resource)
1d96fe7e054e taking StatelessDatabaseOperations out of ServerIndex
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
401 {
4591
ff8170d17d90 moving all accesses to databases from IDatabaseWrapper to ITransaction
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4589
diff changeset
402 transaction_.LogExportedResource(resource);
4586
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
403 }
1d96fe7e054e taking StatelessDatabaseOperations out of ServerIndex
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
404
1d96fe7e054e taking StatelessDatabaseOperations out of ServerIndex
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
405 void SetGlobalProperty(GlobalProperty property,
4607
f75c63aa9de0 differentiating between shared and private global properties
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4595
diff changeset
406 bool shared,
4586
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
407 const std::string& value)
1d96fe7e054e taking StatelessDatabaseOperations out of ServerIndex
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
408 {
4607
f75c63aa9de0 differentiating between shared and private global properties
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4595
diff changeset
409 transaction_.SetGlobalProperty(property, shared, value);
4586
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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410 }
1d96fe7e054e taking StatelessDatabaseOperations out of ServerIndex
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
411
1d96fe7e054e taking StatelessDatabaseOperations out of ServerIndex
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
412 void SetMetadata(int64_t id,
1d96fe7e054e taking StatelessDatabaseOperations out of ServerIndex
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
413 MetadataType type,
4623
95ffe3b6ef7c handling of revisions for metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4613
diff changeset
414 const std::string& value,
95ffe3b6ef7c handling of revisions for metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4613
diff changeset
415 int64_t revision)
4586
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
416 {
4623
95ffe3b6ef7c handling of revisions for metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4613
diff changeset
417 return transaction_.SetMetadata(id, type, value, revision);
4586
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
418 }
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
419
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
420 void SetProtectedPatient(int64_t internalId,
1d96fe7e054e taking StatelessDatabaseOperations out of ServerIndex
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
421 bool isProtected)
1d96fe7e054e taking StatelessDatabaseOperations out of ServerIndex
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
422 {
4591
ff8170d17d90 moving all accesses to databases from IDatabaseWrapper to ITransaction
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4589
diff changeset
423 transaction_.SetProtectedPatient(internalId, isProtected);
4586
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
424 }
1d96fe7e054e taking StatelessDatabaseOperations out of ServerIndex
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
425
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
426 void SetResourcesContent(const ResourcesContent& content)
1d96fe7e054e taking StatelessDatabaseOperations out of ServerIndex
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
427 {
4591
ff8170d17d90 moving all accesses to databases from IDatabaseWrapper to ITransaction
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4589
diff changeset
428 transaction_.SetResourcesContent(content);
4586
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
429 }
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
430
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
431 void Recycle(uint64_t maximumStorageSize,
1d96fe7e054e taking StatelessDatabaseOperations out of ServerIndex
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
432 unsigned int maximumPatients,
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
433 uint64_t addedInstanceSize,
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
434 const std::string& newPatientId);
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
435 };
1d96fe7e054e taking StatelessDatabaseOperations out of ServerIndex
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
436
1d96fe7e054e taking StatelessDatabaseOperations out of ServerIndex
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
437
1d96fe7e054e taking StatelessDatabaseOperations out of ServerIndex
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
438 class IReadOnlyOperations : public boost::noncopyable
1d96fe7e054e taking StatelessDatabaseOperations out of ServerIndex
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
439 {
1d96fe7e054e taking StatelessDatabaseOperations out of ServerIndex
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
440 public:
1d96fe7e054e taking StatelessDatabaseOperations out of ServerIndex
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
441 virtual ~IReadOnlyOperations()
1d96fe7e054e taking StatelessDatabaseOperations out of ServerIndex
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
442 {
1d96fe7e054e taking StatelessDatabaseOperations out of ServerIndex
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
443 }
1d96fe7e054e taking StatelessDatabaseOperations out of ServerIndex
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
444
1d96fe7e054e taking StatelessDatabaseOperations out of ServerIndex
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
445 virtual void Apply(ReadOnlyTransaction& transaction) = 0;
1d96fe7e054e taking StatelessDatabaseOperations out of ServerIndex
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
446 };
1d96fe7e054e taking StatelessDatabaseOperations out of ServerIndex
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
447
1d96fe7e054e taking StatelessDatabaseOperations out of ServerIndex
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
448
1d96fe7e054e taking StatelessDatabaseOperations out of ServerIndex
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
449 class IReadWriteOperations : public boost::noncopyable
1d96fe7e054e taking StatelessDatabaseOperations out of ServerIndex
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
450 {
1d96fe7e054e taking StatelessDatabaseOperations out of ServerIndex
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
451 public:
1d96fe7e054e taking StatelessDatabaseOperations out of ServerIndex
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
452 virtual ~IReadWriteOperations()
1d96fe7e054e taking StatelessDatabaseOperations out of ServerIndex
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
453 {
1d96fe7e054e taking StatelessDatabaseOperations out of ServerIndex
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
454 }
1d96fe7e054e taking StatelessDatabaseOperations out of ServerIndex
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
455
1d96fe7e054e taking StatelessDatabaseOperations out of ServerIndex
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
456 virtual void Apply(ReadWriteTransaction& transaction) = 0;
1d96fe7e054e taking StatelessDatabaseOperations out of ServerIndex
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
457 };
1d96fe7e054e taking StatelessDatabaseOperations out of ServerIndex
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
458
1d96fe7e054e taking StatelessDatabaseOperations out of ServerIndex
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
459
1d96fe7e054e taking StatelessDatabaseOperations out of ServerIndex
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
460 private:
1d96fe7e054e taking StatelessDatabaseOperations out of ServerIndex
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
461 class MainDicomTagsRegistry;
1d96fe7e054e taking StatelessDatabaseOperations out of ServerIndex
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
462 class Transaction;
1d96fe7e054e taking StatelessDatabaseOperations out of ServerIndex
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
463
4587
888868a5dc4e ServerIndex now uses StatelessDatabaseOperations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4586
diff changeset
464 IDatabaseWrapper& db_;
4613
2684544ff03c maximum number of database retries for writer collisions is now set by the plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4607
diff changeset
465 boost::shared_ptr<MainDicomTagsRegistry> mainDicomTagsRegistry_; // "shared_ptr" because of PImpl
2684544ff03c maximum number of database retries for writer collisions is now set by the plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4607
diff changeset
466 bool hasFlushToDisk_;
2684544ff03c maximum number of database retries for writer collisions is now set by the plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4607
diff changeset
467
2684544ff03c maximum number of database retries for writer collisions is now set by the plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4607
diff changeset
468 // Mutex to protect the configuration options
2684544ff03c maximum number of database retries for writer collisions is now set by the plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4607
diff changeset
469 boost::shared_mutex mutex_;
4586
1d96fe7e054e taking StatelessDatabaseOperations out of ServerIndex
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
470 std::unique_ptr<ITransactionContextFactory> factory_;
4587
888868a5dc4e ServerIndex now uses StatelessDatabaseOperations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4586
diff changeset
471 unsigned int maxRetries_;
4586
1d96fe7e054e taking StatelessDatabaseOperations out of ServerIndex
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
472
1d96fe7e054e taking StatelessDatabaseOperations out of ServerIndex
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
473 void NormalizeLookup(std::vector<DatabaseConstraint>& target,
1d96fe7e054e taking StatelessDatabaseOperations out of ServerIndex
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
474 const DatabaseLookup& source,
1d96fe7e054e taking StatelessDatabaseOperations out of ServerIndex
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
475 ResourceType level) const;
1d96fe7e054e taking StatelessDatabaseOperations out of ServerIndex
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
476
1d96fe7e054e taking StatelessDatabaseOperations out of ServerIndex
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
477 void ApplyInternal(IReadOnlyOperations* readOperations,
1d96fe7e054e taking StatelessDatabaseOperations out of ServerIndex
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
478 IReadWriteOperations* writeOperations);
1d96fe7e054e taking StatelessDatabaseOperations out of ServerIndex
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
479
1d96fe7e054e taking StatelessDatabaseOperations out of ServerIndex
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
480 protected:
1d96fe7e054e taking StatelessDatabaseOperations out of ServerIndex
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
481 void StandaloneRecycling(uint64_t maximumStorageSize,
1d96fe7e054e taking StatelessDatabaseOperations out of ServerIndex
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
482 unsigned int maximumPatientCount);
1d96fe7e054e taking StatelessDatabaseOperations out of ServerIndex
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
483
1d96fe7e054e taking StatelessDatabaseOperations out of ServerIndex
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
484 public:
4591
ff8170d17d90 moving all accesses to databases from IDatabaseWrapper to ITransaction
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4589
diff changeset
485 explicit StatelessDatabaseOperations(IDatabaseWrapper& database);
4586
1d96fe7e054e taking StatelessDatabaseOperations out of ServerIndex
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
486
1d96fe7e054e taking StatelessDatabaseOperations out of ServerIndex
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
487 void SetTransactionContextFactory(ITransactionContextFactory* factory /* takes ownership */);
4613
2684544ff03c maximum number of database retries for writer collisions is now set by the plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4607
diff changeset
488
2684544ff03c maximum number of database retries for writer collisions is now set by the plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4607
diff changeset
489 // Only used to handle "ErrorCode_DatabaseCannotSerialize" in the
2684544ff03c maximum number of database retries for writer collisions is now set by the plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4607
diff changeset
490 // case of collision between multiple writers
2684544ff03c maximum number of database retries for writer collisions is now set by the plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4607
diff changeset
491 void SetMaxDatabaseRetries(unsigned int maxRetries);
4586
1d96fe7e054e taking StatelessDatabaseOperations out of ServerIndex
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
492
1d96fe7e054e taking StatelessDatabaseOperations out of ServerIndex
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
493 // It is assumed that "GetDatabaseVersion()" can run out of a
1d96fe7e054e taking StatelessDatabaseOperations out of ServerIndex
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
494 // database transaction
1d96fe7e054e taking StatelessDatabaseOperations out of ServerIndex
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
495 unsigned int GetDatabaseVersion()
1d96fe7e054e taking StatelessDatabaseOperations out of ServerIndex
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
496 {
1d96fe7e054e taking StatelessDatabaseOperations out of ServerIndex
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
497 return db_.GetDatabaseVersion();
1d96fe7e054e taking StatelessDatabaseOperations out of ServerIndex
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
498 }
1d96fe7e054e taking StatelessDatabaseOperations out of ServerIndex
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
499
4587
888868a5dc4e ServerIndex now uses StatelessDatabaseOperations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4586
diff changeset
500 void FlushToDisk();
888868a5dc4e ServerIndex now uses StatelessDatabaseOperations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4586
diff changeset
501
888868a5dc4e ServerIndex now uses StatelessDatabaseOperations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4586
diff changeset
502 bool HasFlushToDisk() const
888868a5dc4e ServerIndex now uses StatelessDatabaseOperations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4586
diff changeset
503 {
888868a5dc4e ServerIndex now uses StatelessDatabaseOperations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4586
diff changeset
504 return hasFlushToDisk_;
888868a5dc4e ServerIndex now uses StatelessDatabaseOperations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4586
diff changeset
505 }
888868a5dc4e ServerIndex now uses StatelessDatabaseOperations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4586
diff changeset
506
4586
1d96fe7e054e taking StatelessDatabaseOperations out of ServerIndex
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
507 void Apply(IReadOnlyOperations& operations);
1d96fe7e054e taking StatelessDatabaseOperations out of ServerIndex
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
508
1d96fe7e054e taking StatelessDatabaseOperations out of ServerIndex
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
509 void Apply(IReadWriteOperations& operations);
1d96fe7e054e taking StatelessDatabaseOperations out of ServerIndex
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
510
4935
acd3f72e2a21 split ExpandResource in 2: read from DB and serialize to json. This will allow us to merge requested tags from both the DB and the file system
Alain Mazy <am@osimis.io>
parents: 4892
diff changeset
511 bool ExpandResource(ExpandedResource& target,
4586
1d96fe7e054e taking StatelessDatabaseOperations out of ServerIndex
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
512 const std::string& publicId,
4697
569d9ef165b1 Added "short", "simplify" and/or "full" options to control the format of DICOM tags wherever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4694
diff changeset
513 ResourceType level,
4940
304514ce84ee tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags'
Alain Mazy <am@osimis.io>
parents: 4939
diff changeset
514 const std::set<DicomTag>& requestedTags,
304514ce84ee tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags'
Alain Mazy <am@osimis.io>
parents: 4939
diff changeset
515 ExpandResourceDbFlags expandFlags);
4586
1d96fe7e054e taking StatelessDatabaseOperations out of ServerIndex
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
516
1d96fe7e054e taking StatelessDatabaseOperations out of ServerIndex
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
517 void GetAllMetadata(std::map<MetadataType, std::string>& target,
1d96fe7e054e taking StatelessDatabaseOperations out of ServerIndex
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
518 const std::string& publicId,
1d96fe7e054e taking StatelessDatabaseOperations out of ServerIndex
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
519 ResourceType level);
1d96fe7e054e taking StatelessDatabaseOperations out of ServerIndex
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
520
1d96fe7e054e taking StatelessDatabaseOperations out of ServerIndex
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
521 void GetAllUuids(std::list<std::string>& target,
1d96fe7e054e taking StatelessDatabaseOperations out of ServerIndex
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
522 ResourceType resourceType);
1d96fe7e054e taking StatelessDatabaseOperations out of ServerIndex
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
523
1d96fe7e054e taking StatelessDatabaseOperations out of ServerIndex
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
524 void GetAllUuids(std::list<std::string>& target,
1d96fe7e054e taking StatelessDatabaseOperations out of ServerIndex
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
525 ResourceType resourceType,
1d96fe7e054e taking StatelessDatabaseOperations out of ServerIndex
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
526 size_t since,
1d96fe7e054e taking StatelessDatabaseOperations out of ServerIndex
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
527 size_t limit);
1d96fe7e054e taking StatelessDatabaseOperations out of ServerIndex
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
528
1d96fe7e054e taking StatelessDatabaseOperations out of ServerIndex
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
529 void GetGlobalStatistics(/* out */ uint64_t& diskSize,
1d96fe7e054e taking StatelessDatabaseOperations out of ServerIndex
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
530 /* out */ uint64_t& uncompressedSize,
1d96fe7e054e taking StatelessDatabaseOperations out of ServerIndex
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
531 /* out */ uint64_t& countPatients,
1d96fe7e054e taking StatelessDatabaseOperations out of ServerIndex
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
532 /* out */ uint64_t& countStudies,
1d96fe7e054e taking StatelessDatabaseOperations out of ServerIndex
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
533 /* out */ uint64_t& countSeries,
1d96fe7e054e taking StatelessDatabaseOperations out of ServerIndex
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
534 /* out */ uint64_t& countInstances);
1d96fe7e054e taking StatelessDatabaseOperations out of ServerIndex
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
535
1d96fe7e054e taking StatelessDatabaseOperations out of ServerIndex
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
536 bool LookupAttachment(FileInfo& attachment,
4627
f7d5372b59b3 handling revisions of attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4623
diff changeset
537 int64_t& revision,
4586
1d96fe7e054e taking StatelessDatabaseOperations out of ServerIndex
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
538 const std::string& instancePublicId,
1d96fe7e054e taking StatelessDatabaseOperations out of ServerIndex
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
539 FileContentType contentType);
1d96fe7e054e taking StatelessDatabaseOperations out of ServerIndex
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
540
1d96fe7e054e taking StatelessDatabaseOperations out of ServerIndex
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
541 void GetChanges(Json::Value& target,
1d96fe7e054e taking StatelessDatabaseOperations out of ServerIndex
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
542 int64_t since,
1d96fe7e054e taking StatelessDatabaseOperations out of ServerIndex
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
543 unsigned int maxResults);
1d96fe7e054e taking StatelessDatabaseOperations out of ServerIndex
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
544
1d96fe7e054e taking StatelessDatabaseOperations out of ServerIndex
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
545 void GetLastChange(Json::Value& target);
1d96fe7e054e taking StatelessDatabaseOperations out of ServerIndex
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
546
1d96fe7e054e taking StatelessDatabaseOperations out of ServerIndex
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
547 void GetExportedResources(Json::Value& target,
1d96fe7e054e taking StatelessDatabaseOperations out of ServerIndex
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
548 int64_t since,
1d96fe7e054e taking StatelessDatabaseOperations out of ServerIndex
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
549 unsigned int maxResults);
1d96fe7e054e taking StatelessDatabaseOperations out of ServerIndex
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
550
1d96fe7e054e taking StatelessDatabaseOperations out of ServerIndex
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
551 void GetLastExportedResource(Json::Value& target);
1d96fe7e054e taking StatelessDatabaseOperations out of ServerIndex
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
552
1d96fe7e054e taking StatelessDatabaseOperations out of ServerIndex
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
553 bool IsProtectedPatient(const std::string& publicId);
1d96fe7e054e taking StatelessDatabaseOperations out of ServerIndex
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
554
1d96fe7e054e taking StatelessDatabaseOperations out of ServerIndex
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
555 void GetChildren(std::list<std::string>& result,
1d96fe7e054e taking StatelessDatabaseOperations out of ServerIndex
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
556 const std::string& publicId);
1d96fe7e054e taking StatelessDatabaseOperations out of ServerIndex
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
557
1d96fe7e054e taking StatelessDatabaseOperations out of ServerIndex
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
558 void GetChildInstances(std::list<std::string>& result,
1d96fe7e054e taking StatelessDatabaseOperations out of ServerIndex
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
559 const std::string& publicId);
1d96fe7e054e taking StatelessDatabaseOperations out of ServerIndex
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
560
1d96fe7e054e taking StatelessDatabaseOperations out of ServerIndex
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
561 bool LookupMetadata(std::string& target,
4623
95ffe3b6ef7c handling of revisions for metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4613
diff changeset
562 int64_t& revision,
4586
1d96fe7e054e taking StatelessDatabaseOperations out of ServerIndex
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
563 const std::string& publicId,
1d96fe7e054e taking StatelessDatabaseOperations out of ServerIndex
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
564 ResourceType expectedType,
1d96fe7e054e taking StatelessDatabaseOperations out of ServerIndex
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
565 MetadataType type);
1d96fe7e054e taking StatelessDatabaseOperations out of ServerIndex
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
566
1d96fe7e054e taking StatelessDatabaseOperations out of ServerIndex
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
567 void ListAvailableAttachments(std::set<FileContentType>& target,
1d96fe7e054e taking StatelessDatabaseOperations out of ServerIndex
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
568 const std::string& publicId,
1d96fe7e054e taking StatelessDatabaseOperations out of ServerIndex
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
569 ResourceType expectedType);
1d96fe7e054e taking StatelessDatabaseOperations out of ServerIndex
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
570
1d96fe7e054e taking StatelessDatabaseOperations out of ServerIndex
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
571 bool LookupParent(std::string& target,
1d96fe7e054e taking StatelessDatabaseOperations out of ServerIndex
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
572 const std::string& publicId);
1d96fe7e054e taking StatelessDatabaseOperations out of ServerIndex
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
573
1d96fe7e054e taking StatelessDatabaseOperations out of ServerIndex
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
574 void GetResourceStatistics(/* out */ ResourceType& type,
1d96fe7e054e taking StatelessDatabaseOperations out of ServerIndex
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
575 /* out */ uint64_t& diskSize,
1d96fe7e054e taking StatelessDatabaseOperations out of ServerIndex
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
576 /* out */ uint64_t& uncompressedSize,
1d96fe7e054e taking StatelessDatabaseOperations out of ServerIndex
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
577 /* out */ unsigned int& countStudies,
1d96fe7e054e taking StatelessDatabaseOperations out of ServerIndex
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
578 /* out */ unsigned int& countSeries,
1d96fe7e054e taking StatelessDatabaseOperations out of ServerIndex
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
579 /* out */ unsigned int& countInstances,
1d96fe7e054e taking StatelessDatabaseOperations out of ServerIndex
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
580 /* out */ uint64_t& dicomDiskSize,
1d96fe7e054e taking StatelessDatabaseOperations out of ServerIndex
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
581 /* out */ uint64_t& dicomUncompressedSize,
1d96fe7e054e taking StatelessDatabaseOperations out of ServerIndex
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
582 const std::string& publicId);
1d96fe7e054e taking StatelessDatabaseOperations out of ServerIndex
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
583
1d96fe7e054e taking StatelessDatabaseOperations out of ServerIndex
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
584 void LookupIdentifierExact(std::vector<std::string>& result,
1d96fe7e054e taking StatelessDatabaseOperations out of ServerIndex
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
585 ResourceType level,
1d96fe7e054e taking StatelessDatabaseOperations out of ServerIndex
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
586 const DicomTag& tag,
1d96fe7e054e taking StatelessDatabaseOperations out of ServerIndex
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
587 const std::string& value);
1d96fe7e054e taking StatelessDatabaseOperations out of ServerIndex
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
588
1d96fe7e054e taking StatelessDatabaseOperations out of ServerIndex
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
589 bool LookupGlobalProperty(std::string& value,
4607
f75c63aa9de0 differentiating between shared and private global properties
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4595
diff changeset
590 GlobalProperty property,
f75c63aa9de0 differentiating between shared and private global properties
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4595
diff changeset
591 bool shared);
4586
1d96fe7e054e taking StatelessDatabaseOperations out of ServerIndex
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
592
1d96fe7e054e taking StatelessDatabaseOperations out of ServerIndex
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
593 std::string GetGlobalProperty(GlobalProperty property,
4607
f75c63aa9de0 differentiating between shared and private global properties
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4595
diff changeset
594 bool shared,
4586
1d96fe7e054e taking StatelessDatabaseOperations out of ServerIndex
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
595 const std::string& defaultValue);
1d96fe7e054e taking StatelessDatabaseOperations out of ServerIndex
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
596
1d96fe7e054e taking StatelessDatabaseOperations out of ServerIndex
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
597 bool GetMainDicomTags(DicomMap& result,
1d96fe7e054e taking StatelessDatabaseOperations out of ServerIndex
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
598 const std::string& publicId,
1d96fe7e054e taking StatelessDatabaseOperations out of ServerIndex
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
599 ResourceType expectedType,
1d96fe7e054e taking StatelessDatabaseOperations out of ServerIndex
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
600 ResourceType levelOfInterest);
1d96fe7e054e taking StatelessDatabaseOperations out of ServerIndex
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
601
1d96fe7e054e taking StatelessDatabaseOperations out of ServerIndex
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
602 // Only applicable at the instance level
1d96fe7e054e taking StatelessDatabaseOperations out of ServerIndex
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
603 bool GetAllMainDicomTags(DicomMap& result,
1d96fe7e054e taking StatelessDatabaseOperations out of ServerIndex
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
604 const std::string& instancePublicId);
1d96fe7e054e taking StatelessDatabaseOperations out of ServerIndex
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
605
1d96fe7e054e taking StatelessDatabaseOperations out of ServerIndex
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
606 bool LookupResourceType(ResourceType& type,
1d96fe7e054e taking StatelessDatabaseOperations out of ServerIndex
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
607 const std::string& publicId);
1d96fe7e054e taking StatelessDatabaseOperations out of ServerIndex
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
608
1d96fe7e054e taking StatelessDatabaseOperations out of ServerIndex
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
609 bool LookupParent(std::string& target,
1d96fe7e054e taking StatelessDatabaseOperations out of ServerIndex
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
610 const std::string& publicId,
1d96fe7e054e taking StatelessDatabaseOperations out of ServerIndex
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
611 ResourceType parentType);
1d96fe7e054e taking StatelessDatabaseOperations out of ServerIndex
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
612
1d96fe7e054e taking StatelessDatabaseOperations out of ServerIndex
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
613 void ApplyLookupResources(std::vector<std::string>& resourcesId,
1d96fe7e054e taking StatelessDatabaseOperations out of ServerIndex
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
614 std::vector<std::string>* instancesId, // Can be NULL if not needed
1d96fe7e054e taking StatelessDatabaseOperations out of ServerIndex
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
615 const DatabaseLookup& lookup,
1d96fe7e054e taking StatelessDatabaseOperations out of ServerIndex
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
616 ResourceType queryLevel,
1d96fe7e054e taking StatelessDatabaseOperations out of ServerIndex
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
617 size_t limit);
1d96fe7e054e taking StatelessDatabaseOperations out of ServerIndex
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
618
4694
da1edb7d6332 "/tools/bulk-delete" to delete a group of multiple, unrelated resources at once
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4640
diff changeset
619 bool DeleteResource(Json::Value& remainingAncestor /* out */,
4586
1d96fe7e054e taking StatelessDatabaseOperations out of ServerIndex
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
620 const std::string& uuid,
1d96fe7e054e taking StatelessDatabaseOperations out of ServerIndex
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
621 ResourceType expectedType);
1d96fe7e054e taking StatelessDatabaseOperations out of ServerIndex
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
622
1d96fe7e054e taking StatelessDatabaseOperations out of ServerIndex
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
623 void LogExportedResource(const std::string& publicId,
1d96fe7e054e taking StatelessDatabaseOperations out of ServerIndex
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
624 const std::string& remoteModality);
1d96fe7e054e taking StatelessDatabaseOperations out of ServerIndex
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
625
1d96fe7e054e taking StatelessDatabaseOperations out of ServerIndex
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
626 void SetProtectedPatient(const std::string& publicId,
1d96fe7e054e taking StatelessDatabaseOperations out of ServerIndex
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
627 bool isProtected);
1d96fe7e054e taking StatelessDatabaseOperations out of ServerIndex
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
628
4623
95ffe3b6ef7c handling of revisions for metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4613
diff changeset
629 void SetMetadata(int64_t& newRevision /*out*/,
95ffe3b6ef7c handling of revisions for metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4613
diff changeset
630 const std::string& publicId,
4586
1d96fe7e054e taking StatelessDatabaseOperations out of ServerIndex
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
631 MetadataType type,
4623
95ffe3b6ef7c handling of revisions for metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4613
diff changeset
632 const std::string& value,
95ffe3b6ef7c handling of revisions for metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4613
diff changeset
633 bool hasOldRevision,
4640
66109d24d26e "ETag" headers for metadata and attachments now allow strong comparison (MD5 is included)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4627
diff changeset
634 int64_t oldRevision,
66109d24d26e "ETag" headers for metadata and attachments now allow strong comparison (MD5 is included)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4627
diff changeset
635 const std::string& oldMD5);
4586
1d96fe7e054e taking StatelessDatabaseOperations out of ServerIndex
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
636
4623
95ffe3b6ef7c handling of revisions for metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4613
diff changeset
637 // Same as "SetMetadata()", but doesn't care about revisions
95ffe3b6ef7c handling of revisions for metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4613
diff changeset
638 void OverwriteMetadata(const std::string& publicId,
95ffe3b6ef7c handling of revisions for metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4613
diff changeset
639 MetadataType type,
95ffe3b6ef7c handling of revisions for metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4613
diff changeset
640 const std::string& value);
95ffe3b6ef7c handling of revisions for metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4613
diff changeset
641
95ffe3b6ef7c handling of revisions for metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4613
diff changeset
642 bool DeleteMetadata(const std::string& publicId,
95ffe3b6ef7c handling of revisions for metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4613
diff changeset
643 MetadataType type,
95ffe3b6ef7c handling of revisions for metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4613
diff changeset
644 bool hasRevision,
4640
66109d24d26e "ETag" headers for metadata and attachments now allow strong comparison (MD5 is included)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4627
diff changeset
645 int64_t revision,
66109d24d26e "ETag" headers for metadata and attachments now allow strong comparison (MD5 is included)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4627
diff changeset
646 const std::string& md5);
4586
1d96fe7e054e taking StatelessDatabaseOperations out of ServerIndex
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
647
4607
f75c63aa9de0 differentiating between shared and private global properties
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4595
diff changeset
648 uint64_t IncrementGlobalSequence(GlobalProperty sequence,
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649 bool shared);
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650
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651 void DeleteChanges();
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652
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653 void DeleteExportedResources();
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654
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655 void SetGlobalProperty(GlobalProperty property,
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656 bool shared,
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657 const std::string& value);
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658
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659 bool DeleteAttachment(const std::string& publicId,
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660 FileContentType type,
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661 bool hasRevision,
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662 int64_t revision,
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663 const std::string& md5);
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664
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665 void LogChange(int64_t internalId,
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666 ChangeType changeType,
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667 const std::string& publicId,
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668 ResourceType level);
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669
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670 void ReconstructInstance(const ParsedDicomFile& dicom);
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671
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672 StoreStatus Store(std::map<MetadataType, std::string>& instanceMetadata,
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673 const DicomMap& dicomSummary,
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674 const DicomSequencesMap& sequencesToStore,
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675 const Attachments& attachments,
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676 const MetadataMap& metadata,
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677 const DicomInstanceOrigin& origin,
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678 bool overwrite,
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679 bool hasTransferSyntax,
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680 DicomTransferSyntax transferSyntax,
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681 bool hasPixelDataOffset,
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682 uint64_t pixelDataOffset,
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683 uint64_t maximumStorageSize,
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684 unsigned int maximumPatients,
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685 bool isReconstruct);
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686
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687 StoreStatus AddAttachment(int64_t& newRevision /*out*/,
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688 const FileInfo& attachment,
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689 const std::string& publicId,
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690 uint64_t maximumStorageSize,
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691 unsigned int maximumPatients,
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692 bool hasOldRevision,
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693 int64_t oldRevision,
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694 const std::string& oldMd5);
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695 };
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696 }