orthanc: OrthancFramework/Sources/DicomParsing/Internals/DicomImageDecoder.cpp annotate

annotate OrthancFramework/Sources/DicomParsing/Internals/DicomImageDecoder.cpp @ 4136:2724977419fb

Fix DICOM SCP filters if some query tag has more than 256 characters

author	Sebastien Jodogne <s.jodogne@gmail.com>
date	Thu, 06 Aug 2020 15:55:03 +0200
parents	bf7b9edf6b81
children	6774605d4341

rev	line source
845 48016722c770 refactoring Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	1 /**
48016722c770 refactoring Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	2 * Orthanc - A Lightweight, RESTful DICOM Store
1900 b1291df2f780 2016 Sebastien Jodogne <s.jodogne@gmail.com> parents: 1826 diff changeset	3 * Copyright (C) 2012-2016 Sebastien Jodogne, Medical Physics
1288 6e7e5ed91c2d upgrade to year 2015 Sebastien Jodogne <s.jodogne@gmail.com> parents: 1206 diff changeset	4 * Department, University Hospital of Liege, Belgium
3640 94f4a18a79cc upgrade to year 2020 Sebastien Jodogne <s.jodogne@gmail.com> parents: 3525 diff changeset	5 * Copyright (C) 2017-2020 Osimis S.A., Belgium
845 48016722c770 refactoring Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	6 *
48016722c770 refactoring Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	7 * This program is free software: you can redistribute it and/or
4119 bf7b9edf6b81 re-licensing the OrthancFramework to LGPL, in order to license Stone of Orthanc under LGPL Sebastien Jodogne <s.jodogne@gmail.com> parents: 4044 diff changeset	8 * modify it under the terms of the GNU Lesser General Public License
bf7b9edf6b81 re-licensing the OrthancFramework to LGPL, in order to license Stone of Orthanc under LGPL Sebastien Jodogne <s.jodogne@gmail.com> parents: 4044 diff changeset	9 * as published by the Free Software Foundation, either version 3 of
bf7b9edf6b81 re-licensing the OrthancFramework to LGPL, in order to license Stone of Orthanc under LGPL Sebastien Jodogne <s.jodogne@gmail.com> parents: 4044 diff changeset	10 * the License, or (at your option) any later version.
845 48016722c770 refactoring Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	11 *
48016722c770 refactoring Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	12 * This program is distributed in the hope that it will be useful, but
48016722c770 refactoring Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	13 * WITHOUT ANY WARRANTY; without even the implied warranty of
48016722c770 refactoring Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	14 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
4119 bf7b9edf6b81 re-licensing the OrthancFramework to LGPL, in order to license Stone of Orthanc under LGPL Sebastien Jodogne <s.jodogne@gmail.com> parents: 4044 diff changeset	15 * Lesser General Public License for more details.
845 48016722c770 refactoring Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	16 *
4119 bf7b9edf6b81 re-licensing the OrthancFramework to LGPL, in order to license Stone of Orthanc under LGPL Sebastien Jodogne <s.jodogne@gmail.com> parents: 4044 diff changeset	17 * You should have received a copy of the GNU Lesser General Public
bf7b9edf6b81 re-licensing the OrthancFramework to LGPL, in order to license Stone of Orthanc under LGPL Sebastien Jodogne <s.jodogne@gmail.com> parents: 4044 diff changeset	18 * License along with this program. If not, see
bf7b9edf6b81 re-licensing the OrthancFramework to LGPL, in order to license Stone of Orthanc under LGPL Sebastien Jodogne <s.jodogne@gmail.com> parents: 4044 diff changeset	19 * <http://www.gnu.org/licenses/>.
845 48016722c770 refactoring Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	20 **/
48016722c770 refactoring Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	21
48016722c770 refactoring Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	22
2382 7284093111b0 big reorganization to cleanly separate framework vs. server Sebastien Jodogne <s.jodogne@gmail.com> parents: 2381 diff changeset	23 #include "../../PrecompiledHeaders.h"
845 48016722c770 refactoring Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	24 #include "DicomImageDecoder.h"
48016722c770 refactoring Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	25
3744 accf1b60b108 accessing raw pixel data Sebastien Jodogne <s.jodogne@gmail.com> parents: 3712 diff changeset	26 #include "../ParsedDicomFile.h"
accf1b60b108 accessing raw pixel data Sebastien Jodogne <s.jodogne@gmail.com> parents: 3712 diff changeset	27
846 715ab7674993 refactoring Sebastien Jodogne <s.jodogne@gmail.com> parents: 845 diff changeset	28
715ab7674993 refactoring Sebastien Jodogne <s.jodogne@gmail.com> parents: 845 diff changeset	29 /*=========================================================================
715ab7674993 refactoring Sebastien Jodogne <s.jodogne@gmail.com> parents: 845 diff changeset	30
715ab7674993 refactoring Sebastien Jodogne <s.jodogne@gmail.com> parents: 845 diff changeset	31 This file is based on portions of the following project
715ab7674993 refactoring Sebastien Jodogne <s.jodogne@gmail.com> parents: 845 diff changeset	32 (cf. function "DecodePsmctRle1()"):
715ab7674993 refactoring Sebastien Jodogne <s.jodogne@gmail.com> parents: 845 diff changeset	33
715ab7674993 refactoring Sebastien Jodogne <s.jodogne@gmail.com> parents: 845 diff changeset	34 Program: GDCM (Grassroots DICOM). A DICOM library
715ab7674993 refactoring Sebastien Jodogne <s.jodogne@gmail.com> parents: 845 diff changeset	35 Module: http://gdcm.sourceforge.net/Copyright.html
715ab7674993 refactoring Sebastien Jodogne <s.jodogne@gmail.com> parents: 845 diff changeset	36
863 3c0d0836f704 refactoring Sebastien Jodogne <s.jodogne@gmail.com> parents: 861 diff changeset	37 Copyright (c) 2006-2011 Mathieu Malaterre
3c0d0836f704 refactoring Sebastien Jodogne <s.jodogne@gmail.com> parents: 861 diff changeset	38 Copyright (c) 1993-2005 CREATIS
3c0d0836f704 refactoring Sebastien Jodogne <s.jodogne@gmail.com> parents: 861 diff changeset	39 (CREATIS = Centre de Recherche et d'Applications en Traitement de l'Image)
3c0d0836f704 refactoring Sebastien Jodogne <s.jodogne@gmail.com> parents: 861 diff changeset	40 All rights reserved.
846 715ab7674993 refactoring Sebastien Jodogne <s.jodogne@gmail.com> parents: 845 diff changeset	41
863 3c0d0836f704 refactoring Sebastien Jodogne <s.jodogne@gmail.com> parents: 861 diff changeset	42 Redistribution and use in source and binary forms, with or without
3c0d0836f704 refactoring Sebastien Jodogne <s.jodogne@gmail.com> parents: 861 diff changeset	43 modification, are permitted provided that the following conditions are met:
846 715ab7674993 refactoring Sebastien Jodogne <s.jodogne@gmail.com> parents: 845 diff changeset	44
863 3c0d0836f704 refactoring Sebastien Jodogne <s.jodogne@gmail.com> parents: 861 diff changeset	45 * Redistributions of source code must retain the above copyright notice,
3c0d0836f704 refactoring Sebastien Jodogne <s.jodogne@gmail.com> parents: 861 diff changeset	46 this list of conditions and the following disclaimer.
846 715ab7674993 refactoring Sebastien Jodogne <s.jodogne@gmail.com> parents: 845 diff changeset	47
863 3c0d0836f704 refactoring Sebastien Jodogne <s.jodogne@gmail.com> parents: 861 diff changeset	48 * Redistributions in binary form must reproduce the above copyright notice,
3c0d0836f704 refactoring Sebastien Jodogne <s.jodogne@gmail.com> parents: 861 diff changeset	49 this list of conditions and the following disclaimer in the documentation
3c0d0836f704 refactoring Sebastien Jodogne <s.jodogne@gmail.com> parents: 861 diff changeset	50 and/or other materials provided with the distribution.
846 715ab7674993 refactoring Sebastien Jodogne <s.jodogne@gmail.com> parents: 845 diff changeset	51
863 3c0d0836f704 refactoring Sebastien Jodogne <s.jodogne@gmail.com> parents: 861 diff changeset	52 * Neither name of Mathieu Malaterre, or CREATIS, nor the names of any
3c0d0836f704 refactoring Sebastien Jodogne <s.jodogne@gmail.com> parents: 861 diff changeset	53 contributors (CNRS, INSERM, UCB, Universite Lyon I), may be used to
3c0d0836f704 refactoring Sebastien Jodogne <s.jodogne@gmail.com> parents: 861 diff changeset	54 endorse or promote products derived from this software without specific
3c0d0836f704 refactoring Sebastien Jodogne <s.jodogne@gmail.com> parents: 861 diff changeset	55 prior written permission.
846 715ab7674993 refactoring Sebastien Jodogne <s.jodogne@gmail.com> parents: 845 diff changeset	56
863 3c0d0836f704 refactoring Sebastien Jodogne <s.jodogne@gmail.com> parents: 861 diff changeset	57 THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS ``AS IS''
3c0d0836f704 refactoring Sebastien Jodogne <s.jodogne@gmail.com> parents: 861 diff changeset	58 AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
3c0d0836f704 refactoring Sebastien Jodogne <s.jodogne@gmail.com> parents: 861 diff changeset	59 IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE
3c0d0836f704 refactoring Sebastien Jodogne <s.jodogne@gmail.com> parents: 861 diff changeset	60 ARE DISCLAIMED. IN NO EVENT SHALL THE AUTHORS OR CONTRIBUTORS BE LIABLE FOR
3c0d0836f704 refactoring Sebastien Jodogne <s.jodogne@gmail.com> parents: 861 diff changeset	61 ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL
3c0d0836f704 refactoring Sebastien Jodogne <s.jodogne@gmail.com> parents: 861 diff changeset	62 DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR
3c0d0836f704 refactoring Sebastien Jodogne <s.jodogne@gmail.com> parents: 861 diff changeset	63 SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER
3c0d0836f704 refactoring Sebastien Jodogne <s.jodogne@gmail.com> parents: 861 diff changeset	64 CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY,
3c0d0836f704 refactoring Sebastien Jodogne <s.jodogne@gmail.com> parents: 861 diff changeset	65 OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE
3c0d0836f704 refactoring Sebastien Jodogne <s.jodogne@gmail.com> parents: 861 diff changeset	66 OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
846 715ab7674993 refactoring Sebastien Jodogne <s.jodogne@gmail.com> parents: 845 diff changeset	67
863 3c0d0836f704 refactoring Sebastien Jodogne <s.jodogne@gmail.com> parents: 861 diff changeset	68 =========================================================================*/
846 715ab7674993 refactoring Sebastien Jodogne <s.jodogne@gmail.com> parents: 845 diff changeset	69
715ab7674993 refactoring Sebastien Jodogne <s.jodogne@gmail.com> parents: 845 diff changeset	70
2382 7284093111b0 big reorganization to cleanly separate framework vs. server Sebastien Jodogne <s.jodogne@gmail.com> parents: 2381 diff changeset	71 #include "../../Logging.h"
7284093111b0 big reorganization to cleanly separate framework vs. server Sebastien Jodogne <s.jodogne@gmail.com> parents: 2381 diff changeset	72 #include "../../OrthancException.h"
7284093111b0 big reorganization to cleanly separate framework vs. server Sebastien Jodogne <s.jodogne@gmail.com> parents: 2381 diff changeset	73 #include "../../Images/Image.h"
7284093111b0 big reorganization to cleanly separate framework vs. server Sebastien Jodogne <s.jodogne@gmail.com> parents: 2381 diff changeset	74 #include "../../Images/ImageProcessing.h"
7284093111b0 big reorganization to cleanly separate framework vs. server Sebastien Jodogne <s.jodogne@gmail.com> parents: 2381 diff changeset	75 #include "../../DicomFormat/DicomIntegerPixelAccessor.h"
845 48016722c770 refactoring Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	76 #include "../ToDcmtkBridge.h"
847 03ea55da7429 fully functional JPEG-LS conversion Sebastien Jodogne <s.jodogne@gmail.com> parents: 846 diff changeset	77 #include "../FromDcmtkBridge.h"
845 48016722c770 refactoring Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	78
2380 96b3ec054b69 reorganization in macros Sebastien Jodogne <s.jodogne@gmail.com> parents: 2281 diff changeset	79 #if ORTHANC_ENABLE_PNG == 1
2382 7284093111b0 big reorganization to cleanly separate framework vs. server Sebastien Jodogne <s.jodogne@gmail.com> parents: 2381 diff changeset	80 # include "../../Images/PngWriter.h"
2380 96b3ec054b69 reorganization in macros Sebastien Jodogne <s.jodogne@gmail.com> parents: 2281 diff changeset	81 #endif
96b3ec054b69 reorganization in macros Sebastien Jodogne <s.jodogne@gmail.com> parents: 2281 diff changeset	82
96b3ec054b69 reorganization in macros Sebastien Jodogne <s.jodogne@gmail.com> parents: 2281 diff changeset	83 #if ORTHANC_ENABLE_JPEG == 1
2382 7284093111b0 big reorganization to cleanly separate framework vs. server Sebastien Jodogne <s.jodogne@gmail.com> parents: 2381 diff changeset	84 # include "../../Images/JpegWriter.h"
2380 96b3ec054b69 reorganization in macros Sebastien Jodogne <s.jodogne@gmail.com> parents: 2281 diff changeset	85 #endif
2699 52217dc47a4e new image/pam MIME TYPE supported in /instances/../frames/../image-uint8... routes am@osimis.io parents: 2488 diff changeset	86 #include "../../Images/PamWriter.h"
2380 96b3ec054b69 reorganization in macros Sebastien Jodogne <s.jodogne@gmail.com> parents: 2281 diff changeset	87
847 03ea55da7429 fully functional JPEG-LS conversion Sebastien Jodogne <s.jodogne@gmail.com> parents: 846 diff changeset	88 #include <boost/lexical_cast.hpp>
03ea55da7429 fully functional JPEG-LS conversion Sebastien Jodogne <s.jodogne@gmail.com> parents: 846 diff changeset	89
2423 5a7c5c541a1d Built-in decoding of palette images Sebastien Jodogne <s.jodogne@gmail.com> parents: 2415 diff changeset	90 #include <dcmtk/dcmdata/dcdeftag.h>
1905 8b1baa2315b8 Huge speedup if decoding the family of JPEG transfer syntaxes Sebastien Jodogne <s.jodogne@gmail.com> parents: 1904 diff changeset	91 #include <dcmtk/dcmdata/dcrleccd.h>
8b1baa2315b8 Huge speedup if decoding the family of JPEG transfer syntaxes Sebastien Jodogne <s.jodogne@gmail.com> parents: 1904 diff changeset	92 #include <dcmtk/dcmdata/dcrlecp.h>
2423 5a7c5c541a1d Built-in decoding of palette images Sebastien Jodogne <s.jodogne@gmail.com> parents: 2415 diff changeset	93 #include <dcmtk/dcmdata/dcrlerp.h>
1826 ac5b0b4e2434 refactoring of DicomImageDecoder Sebastien Jodogne <s.jodogne@gmail.com> parents: 1824 diff changeset	94
2380 96b3ec054b69 reorganization in macros Sebastien Jodogne <s.jodogne@gmail.com> parents: 2281 diff changeset	95 #if ORTHANC_ENABLE_DCMTK_JPEG_LOSSLESS == 1
2423 5a7c5c541a1d Built-in decoding of palette images Sebastien Jodogne <s.jodogne@gmail.com> parents: 2415 diff changeset	96 # include <dcmtk/dcmjpeg/djrplol.h>
1944 1a5e070a21c3 fix compilation against DCMTK 3.6.1 Sebastien Jodogne <s.jodogne@gmail.com> parents: 1929 diff changeset	97 # include <dcmtk/dcmjpls/djcodecd.h>
1a5e070a21c3 fix compilation against DCMTK 3.6.1 Sebastien Jodogne <s.jodogne@gmail.com> parents: 1929 diff changeset	98 # include <dcmtk/dcmjpls/djcparam.h>
2423 5a7c5c541a1d Built-in decoding of palette images Sebastien Jodogne <s.jodogne@gmail.com> parents: 2415 diff changeset	99 # include <dcmtk/dcmjpls/djrparam.h>
845 48016722c770 refactoring Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	100 #endif
48016722c770 refactoring Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	101
2380 96b3ec054b69 reorganization in macros Sebastien Jodogne <s.jodogne@gmail.com> parents: 2281 diff changeset	102 #if ORTHANC_ENABLE_DCMTK_JPEG == 1
1944 1a5e070a21c3 fix compilation against DCMTK 3.6.1 Sebastien Jodogne <s.jodogne@gmail.com> parents: 1929 diff changeset	103 # include <dcmtk/dcmjpeg/djcodecd.h>
1a5e070a21c3 fix compilation against DCMTK 3.6.1 Sebastien Jodogne <s.jodogne@gmail.com> parents: 1929 diff changeset	104 # include <dcmtk/dcmjpeg/djcparam.h>
1a5e070a21c3 fix compilation against DCMTK 3.6.1 Sebastien Jodogne <s.jodogne@gmail.com> parents: 1929 diff changeset	105 # include <dcmtk/dcmjpeg/djdecbas.h>
1a5e070a21c3 fix compilation against DCMTK 3.6.1 Sebastien Jodogne <s.jodogne@gmail.com> parents: 1929 diff changeset	106 # include <dcmtk/dcmjpeg/djdecext.h>
1a5e070a21c3 fix compilation against DCMTK 3.6.1 Sebastien Jodogne <s.jodogne@gmail.com> parents: 1929 diff changeset	107 # include <dcmtk/dcmjpeg/djdeclol.h>
1a5e070a21c3 fix compilation against DCMTK 3.6.1 Sebastien Jodogne <s.jodogne@gmail.com> parents: 1929 diff changeset	108 # include <dcmtk/dcmjpeg/djdecpro.h>
1a5e070a21c3 fix compilation against DCMTK 3.6.1 Sebastien Jodogne <s.jodogne@gmail.com> parents: 1929 diff changeset	109 # include <dcmtk/dcmjpeg/djdecsps.h>
1a5e070a21c3 fix compilation against DCMTK 3.6.1 Sebastien Jodogne <s.jodogne@gmail.com> parents: 1929 diff changeset	110 # include <dcmtk/dcmjpeg/djdecsv1.h>
2423 5a7c5c541a1d Built-in decoding of palette images Sebastien Jodogne <s.jodogne@gmail.com> parents: 2415 diff changeset	111 # include <dcmtk/dcmjpeg/djrploss.h>
1905 8b1baa2315b8 Huge speedup if decoding the family of JPEG transfer syntaxes Sebastien Jodogne <s.jodogne@gmail.com> parents: 1904 diff changeset	112 #endif
8b1baa2315b8 Huge speedup if decoding the family of JPEG transfer syntaxes Sebastien Jodogne <s.jodogne@gmail.com> parents: 1904 diff changeset	113
1944 1a5e070a21c3 fix compilation against DCMTK 3.6.1 Sebastien Jodogne <s.jodogne@gmail.com> parents: 1929 diff changeset	114 #if DCMTK_VERSION_NUMBER <= 360
1a5e070a21c3 fix compilation against DCMTK 3.6.1 Sebastien Jodogne <s.jodogne@gmail.com> parents: 1929 diff changeset	115 # define EXS_JPEGProcess1 EXS_JPEGProcess1TransferSyntax
1a5e070a21c3 fix compilation against DCMTK 3.6.1 Sebastien Jodogne <s.jodogne@gmail.com> parents: 1929 diff changeset	116 # define EXS_JPEGProcess2_4 EXS_JPEGProcess2_4TransferSyntax
1a5e070a21c3 fix compilation against DCMTK 3.6.1 Sebastien Jodogne <s.jodogne@gmail.com> parents: 1929 diff changeset	117 # define EXS_JPEGProcess6_8 EXS_JPEGProcess6_8TransferSyntax
1a5e070a21c3 fix compilation against DCMTK 3.6.1 Sebastien Jodogne <s.jodogne@gmail.com> parents: 1929 diff changeset	118 # define EXS_JPEGProcess10_12 EXS_JPEGProcess10_12TransferSyntax
1a5e070a21c3 fix compilation against DCMTK 3.6.1 Sebastien Jodogne <s.jodogne@gmail.com> parents: 1929 diff changeset	119 # define EXS_JPEGProcess14 EXS_JPEGProcess14TransferSyntax
1a5e070a21c3 fix compilation against DCMTK 3.6.1 Sebastien Jodogne <s.jodogne@gmail.com> parents: 1929 diff changeset	120 # define EXS_JPEGProcess14SV1 EXS_JPEGProcess14SV1TransferSyntax
1a5e070a21c3 fix compilation against DCMTK 3.6.1 Sebastien Jodogne <s.jodogne@gmail.com> parents: 1929 diff changeset	121 #endif
845 48016722c770 refactoring Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	122
48016722c770 refactoring Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	123 namespace Orthanc
48016722c770 refactoring Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	124 {
846 715ab7674993 refactoring Sebastien Jodogne <s.jodogne@gmail.com> parents: 845 diff changeset	125 static const DicomTag DICOM_TAG_CONTENT(0x07a1, 0x100a);
715ab7674993 refactoring Sebastien Jodogne <s.jodogne@gmail.com> parents: 845 diff changeset	126 static const DicomTag DICOM_TAG_COMPRESSION_TYPE(0x07a1, 0x1011);
715ab7674993 refactoring Sebastien Jodogne <s.jodogne@gmail.com> parents: 845 diff changeset	127
942 b3f6fb1130cd fixes thanks to cppcheck Sebastien Jodogne <s.jodogne@gmail.com> parents: 876 diff changeset	128
1924 6c73df12ca51 New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding) Sebastien Jodogne <s.jodogne@gmail.com> parents: 1905 diff changeset	129 bool DicomImageDecoder::IsPsmctRle1(DcmDataset& dataset)
846 715ab7674993 refactoring Sebastien Jodogne <s.jodogne@gmail.com> parents: 845 diff changeset	130 {
715ab7674993 refactoring Sebastien Jodogne <s.jodogne@gmail.com> parents: 845 diff changeset	131 DcmElement* e;
715ab7674993 refactoring Sebastien Jodogne <s.jodogne@gmail.com> parents: 845 diff changeset	132 char* c;
715ab7674993 refactoring Sebastien Jodogne <s.jodogne@gmail.com> parents: 845 diff changeset	133
715ab7674993 refactoring Sebastien Jodogne <s.jodogne@gmail.com> parents: 845 diff changeset	134 // Check whether the DICOM instance contains an image encoded with
715ab7674993 refactoring Sebastien Jodogne <s.jodogne@gmail.com> parents: 845 diff changeset	135 // the PMSCT_RLE1 scheme.
715ab7674993 refactoring Sebastien Jodogne <s.jodogne@gmail.com> parents: 845 diff changeset	136 if (!dataset.findAndGetElement(ToDcmtkBridge::Convert(DICOM_TAG_COMPRESSION_TYPE), e).good() \|\|
715ab7674993 refactoring Sebastien Jodogne <s.jodogne@gmail.com> parents: 845 diff changeset	137 e == NULL \|\|
715ab7674993 refactoring Sebastien Jodogne <s.jodogne@gmail.com> parents: 845 diff changeset	138 !e->isaString() \|\|
715ab7674993 refactoring Sebastien Jodogne <s.jodogne@gmail.com> parents: 845 diff changeset	139 !e->getString(c).good() \|\|
715ab7674993 refactoring Sebastien Jodogne <s.jodogne@gmail.com> parents: 845 diff changeset	140 c == NULL \|\|
715ab7674993 refactoring Sebastien Jodogne <s.jodogne@gmail.com> parents: 845 diff changeset	141 strcmp("PMSCT_RLE1", c))
715ab7674993 refactoring Sebastien Jodogne <s.jodogne@gmail.com> parents: 845 diff changeset	142 {
715ab7674993 refactoring Sebastien Jodogne <s.jodogne@gmail.com> parents: 845 diff changeset	143 return false;
715ab7674993 refactoring Sebastien Jodogne <s.jodogne@gmail.com> parents: 845 diff changeset	144 }
715ab7674993 refactoring Sebastien Jodogne <s.jodogne@gmail.com> parents: 845 diff changeset	145 else
715ab7674993 refactoring Sebastien Jodogne <s.jodogne@gmail.com> parents: 845 diff changeset	146 {
715ab7674993 refactoring Sebastien Jodogne <s.jodogne@gmail.com> parents: 845 diff changeset	147 return true;
715ab7674993 refactoring Sebastien Jodogne <s.jodogne@gmail.com> parents: 845 diff changeset	148 }
715ab7674993 refactoring Sebastien Jodogne <s.jodogne@gmail.com> parents: 845 diff changeset	149 }
715ab7674993 refactoring Sebastien Jodogne <s.jodogne@gmail.com> parents: 845 diff changeset	150
715ab7674993 refactoring Sebastien Jodogne <s.jodogne@gmail.com> parents: 845 diff changeset	151
1924 6c73df12ca51 New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding) Sebastien Jodogne <s.jodogne@gmail.com> parents: 1905 diff changeset	152 bool DicomImageDecoder::DecodePsmctRle1(std::string& output,
6c73df12ca51 New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding) Sebastien Jodogne <s.jodogne@gmail.com> parents: 1905 diff changeset	153 DcmDataset& dataset)
846 715ab7674993 refactoring Sebastien Jodogne <s.jodogne@gmail.com> parents: 845 diff changeset	154 {
715ab7674993 refactoring Sebastien Jodogne <s.jodogne@gmail.com> parents: 845 diff changeset	155 // Check whether the DICOM instance contains an image encoded with
715ab7674993 refactoring Sebastien Jodogne <s.jodogne@gmail.com> parents: 845 diff changeset	156 // the PMSCT_RLE1 scheme.
715ab7674993 refactoring Sebastien Jodogne <s.jodogne@gmail.com> parents: 845 diff changeset	157 if (!IsPsmctRle1(dataset))
715ab7674993 refactoring Sebastien Jodogne <s.jodogne@gmail.com> parents: 845 diff changeset	158 {
715ab7674993 refactoring Sebastien Jodogne <s.jodogne@gmail.com> parents: 845 diff changeset	159 return false;
715ab7674993 refactoring Sebastien Jodogne <s.jodogne@gmail.com> parents: 845 diff changeset	160 }
715ab7674993 refactoring Sebastien Jodogne <s.jodogne@gmail.com> parents: 845 diff changeset	161
715ab7674993 refactoring Sebastien Jodogne <s.jodogne@gmail.com> parents: 845 diff changeset	162 // OK, this is a custom RLE encoding from Philips. Get the pixel
715ab7674993 refactoring Sebastien Jodogne <s.jodogne@gmail.com> parents: 845 diff changeset	163 // data from the appropriate private DICOM tag.
715ab7674993 refactoring Sebastien Jodogne <s.jodogne@gmail.com> parents: 845 diff changeset	164 Uint8* pixData = NULL;
715ab7674993 refactoring Sebastien Jodogne <s.jodogne@gmail.com> parents: 845 diff changeset	165 DcmElement* e;
715ab7674993 refactoring Sebastien Jodogne <s.jodogne@gmail.com> parents: 845 diff changeset	166 if (!dataset.findAndGetElement(ToDcmtkBridge::Convert(DICOM_TAG_CONTENT), e).good() \|\|
715ab7674993 refactoring Sebastien Jodogne <s.jodogne@gmail.com> parents: 845 diff changeset	167 e == NULL \|\|
715ab7674993 refactoring Sebastien Jodogne <s.jodogne@gmail.com> parents: 845 diff changeset	168 e->getUint8Array(pixData) != EC_Normal)
715ab7674993 refactoring Sebastien Jodogne <s.jodogne@gmail.com> parents: 845 diff changeset	169 {
715ab7674993 refactoring Sebastien Jodogne <s.jodogne@gmail.com> parents: 845 diff changeset	170 return false;
715ab7674993 refactoring Sebastien Jodogne <s.jodogne@gmail.com> parents: 845 diff changeset	171 }
715ab7674993 refactoring Sebastien Jodogne <s.jodogne@gmail.com> parents: 845 diff changeset	172
715ab7674993 refactoring Sebastien Jodogne <s.jodogne@gmail.com> parents: 845 diff changeset	173 // The "unsigned" below IS VERY IMPORTANT
715ab7674993 refactoring Sebastien Jodogne <s.jodogne@gmail.com> parents: 845 diff changeset	174 const uint8_t* inbuffer = reinterpret_cast<const uint8_t*>(pixData);
715ab7674993 refactoring Sebastien Jodogne <s.jodogne@gmail.com> parents: 845 diff changeset	175 const size_t length = e->getLength();
715ab7674993 refactoring Sebastien Jodogne <s.jodogne@gmail.com> parents: 845 diff changeset	176
715ab7674993 refactoring Sebastien Jodogne <s.jodogne@gmail.com> parents: 845 diff changeset	177 /**
715ab7674993 refactoring Sebastien Jodogne <s.jodogne@gmail.com> parents: 845 diff changeset	178 * The code below is an adaptation of a sample code for GDCM by
715ab7674993 refactoring Sebastien Jodogne <s.jodogne@gmail.com> parents: 845 diff changeset	179 * Mathieu Malaterre (under a BSD license).
715ab7674993 refactoring Sebastien Jodogne <s.jodogne@gmail.com> parents: 845 diff changeset	180 * http://gdcm.sourceforge.net/html/rle2img_8cxx-example.html
715ab7674993 refactoring Sebastien Jodogne <s.jodogne@gmail.com> parents: 845 diff changeset	181 **/
715ab7674993 refactoring Sebastien Jodogne <s.jodogne@gmail.com> parents: 845 diff changeset	182
715ab7674993 refactoring Sebastien Jodogne <s.jodogne@gmail.com> parents: 845 diff changeset	183 // RLE pass
715ab7674993 refactoring Sebastien Jodogne <s.jodogne@gmail.com> parents: 845 diff changeset	184 std::vector<uint8_t> temp;
715ab7674993 refactoring Sebastien Jodogne <s.jodogne@gmail.com> parents: 845 diff changeset	185 temp.reserve(length);
715ab7674993 refactoring Sebastien Jodogne <s.jodogne@gmail.com> parents: 845 diff changeset	186 for (size_t i = 0; i < length; i++)
715ab7674993 refactoring Sebastien Jodogne <s.jodogne@gmail.com> parents: 845 diff changeset	187 {
715ab7674993 refactoring Sebastien Jodogne <s.jodogne@gmail.com> parents: 845 diff changeset	188 if (inbuffer[i] == 0xa5)
715ab7674993 refactoring Sebastien Jodogne <s.jodogne@gmail.com> parents: 845 diff changeset	189 {
715ab7674993 refactoring Sebastien Jodogne <s.jodogne@gmail.com> parents: 845 diff changeset	190 temp.push_back(inbuffer[i+2]);
715ab7674993 refactoring Sebastien Jodogne <s.jodogne@gmail.com> parents: 845 diff changeset	191 for (uint8_t repeat = inbuffer[i + 1]; repeat != 0; repeat--)
715ab7674993 refactoring Sebastien Jodogne <s.jodogne@gmail.com> parents: 845 diff changeset	192 {
715ab7674993 refactoring Sebastien Jodogne <s.jodogne@gmail.com> parents: 845 diff changeset	193 temp.push_back(inbuffer[i+2]);
715ab7674993 refactoring Sebastien Jodogne <s.jodogne@gmail.com> parents: 845 diff changeset	194 }
715ab7674993 refactoring Sebastien Jodogne <s.jodogne@gmail.com> parents: 845 diff changeset	195 i += 2;
715ab7674993 refactoring Sebastien Jodogne <s.jodogne@gmail.com> parents: 845 diff changeset	196 }
715ab7674993 refactoring Sebastien Jodogne <s.jodogne@gmail.com> parents: 845 diff changeset	197 else
715ab7674993 refactoring Sebastien Jodogne <s.jodogne@gmail.com> parents: 845 diff changeset	198 {
715ab7674993 refactoring Sebastien Jodogne <s.jodogne@gmail.com> parents: 845 diff changeset	199 temp.push_back(inbuffer[i]);
715ab7674993 refactoring Sebastien Jodogne <s.jodogne@gmail.com> parents: 845 diff changeset	200 }
715ab7674993 refactoring Sebastien Jodogne <s.jodogne@gmail.com> parents: 845 diff changeset	201 }
715ab7674993 refactoring Sebastien Jodogne <s.jodogne@gmail.com> parents: 845 diff changeset	202
715ab7674993 refactoring Sebastien Jodogne <s.jodogne@gmail.com> parents: 845 diff changeset	203 // Delta encoding pass
715ab7674993 refactoring Sebastien Jodogne <s.jodogne@gmail.com> parents: 845 diff changeset	204 uint16_t delta = 0;
715ab7674993 refactoring Sebastien Jodogne <s.jodogne@gmail.com> parents: 845 diff changeset	205 output.clear();
715ab7674993 refactoring Sebastien Jodogne <s.jodogne@gmail.com> parents: 845 diff changeset	206 output.reserve(temp.size());
715ab7674993 refactoring Sebastien Jodogne <s.jodogne@gmail.com> parents: 845 diff changeset	207 for (size_t i = 0; i < temp.size(); i++)
715ab7674993 refactoring Sebastien Jodogne <s.jodogne@gmail.com> parents: 845 diff changeset	208 {
715ab7674993 refactoring Sebastien Jodogne <s.jodogne@gmail.com> parents: 845 diff changeset	209 uint16_t value;
715ab7674993 refactoring Sebastien Jodogne <s.jodogne@gmail.com> parents: 845 diff changeset	210
715ab7674993 refactoring Sebastien Jodogne <s.jodogne@gmail.com> parents: 845 diff changeset	211 if (temp[i] == 0x5a)
715ab7674993 refactoring Sebastien Jodogne <s.jodogne@gmail.com> parents: 845 diff changeset	212 {
715ab7674993 refactoring Sebastien Jodogne <s.jodogne@gmail.com> parents: 845 diff changeset	213 uint16_t v1 = temp[i + 1];
715ab7674993 refactoring Sebastien Jodogne <s.jodogne@gmail.com> parents: 845 diff changeset	214 uint16_t v2 = temp[i + 2];
715ab7674993 refactoring Sebastien Jodogne <s.jodogne@gmail.com> parents: 845 diff changeset	215 value = (v2 << 8) + v1;
715ab7674993 refactoring Sebastien Jodogne <s.jodogne@gmail.com> parents: 845 diff changeset	216 i += 2;
715ab7674993 refactoring Sebastien Jodogne <s.jodogne@gmail.com> parents: 845 diff changeset	217 }
715ab7674993 refactoring Sebastien Jodogne <s.jodogne@gmail.com> parents: 845 diff changeset	218 else
715ab7674993 refactoring Sebastien Jodogne <s.jodogne@gmail.com> parents: 845 diff changeset	219 {
715ab7674993 refactoring Sebastien Jodogne <s.jodogne@gmail.com> parents: 845 diff changeset	220 value = delta + (int8_t) temp[i];
715ab7674993 refactoring Sebastien Jodogne <s.jodogne@gmail.com> parents: 845 diff changeset	221 }
715ab7674993 refactoring Sebastien Jodogne <s.jodogne@gmail.com> parents: 845 diff changeset	222
715ab7674993 refactoring Sebastien Jodogne <s.jodogne@gmail.com> parents: 845 diff changeset	223 output.push_back(value & 0xff);
715ab7674993 refactoring Sebastien Jodogne <s.jodogne@gmail.com> parents: 845 diff changeset	224 output.push_back(value >> 8);
715ab7674993 refactoring Sebastien Jodogne <s.jodogne@gmail.com> parents: 845 diff changeset	225 delta = value;
715ab7674993 refactoring Sebastien Jodogne <s.jodogne@gmail.com> parents: 845 diff changeset	226 }
715ab7674993 refactoring Sebastien Jodogne <s.jodogne@gmail.com> parents: 845 diff changeset	227
715ab7674993 refactoring Sebastien Jodogne <s.jodogne@gmail.com> parents: 845 diff changeset	228 if (output.size() % 2)
715ab7674993 refactoring Sebastien Jodogne <s.jodogne@gmail.com> parents: 845 diff changeset	229 {
715ab7674993 refactoring Sebastien Jodogne <s.jodogne@gmail.com> parents: 845 diff changeset	230 output.resize(output.size() - 1);
715ab7674993 refactoring Sebastien Jodogne <s.jodogne@gmail.com> parents: 845 diff changeset	231 }
715ab7674993 refactoring Sebastien Jodogne <s.jodogne@gmail.com> parents: 845 diff changeset	232
715ab7674993 refactoring Sebastien Jodogne <s.jodogne@gmail.com> parents: 845 diff changeset	233 return true;
715ab7674993 refactoring Sebastien Jodogne <s.jodogne@gmail.com> parents: 845 diff changeset	234 }
715ab7674993 refactoring Sebastien Jodogne <s.jodogne@gmail.com> parents: 845 diff changeset	235
715ab7674993 refactoring Sebastien Jodogne <s.jodogne@gmail.com> parents: 845 diff changeset	236
942 b3f6fb1130cd fixes thanks to cppcheck Sebastien Jodogne <s.jodogne@gmail.com> parents: 876 diff changeset	237 class DicomImageDecoder::ImageSource
b3f6fb1130cd fixes thanks to cppcheck Sebastien Jodogne <s.jodogne@gmail.com> parents: 876 diff changeset	238 {
b3f6fb1130cd fixes thanks to cppcheck Sebastien Jodogne <s.jodogne@gmail.com> parents: 876 diff changeset	239 private:
b3f6fb1130cd fixes thanks to cppcheck Sebastien Jodogne <s.jodogne@gmail.com> parents: 876 diff changeset	240 std::string psmct_;
3712 2a170a8f1faf replacing std::auto_ptr by std::unique_ptr Sebastien Jodogne <s.jodogne@gmail.com> parents: 3640 diff changeset	241 std::unique_ptr<DicomIntegerPixelAccessor> slowAccessor_;
942 b3f6fb1130cd fixes thanks to cppcheck Sebastien Jodogne <s.jodogne@gmail.com> parents: 876 diff changeset	242
b3f6fb1130cd fixes thanks to cppcheck Sebastien Jodogne <s.jodogne@gmail.com> parents: 876 diff changeset	243 public:
b3f6fb1130cd fixes thanks to cppcheck Sebastien Jodogne <s.jodogne@gmail.com> parents: 876 diff changeset	244 void Setup(DcmDataset& dataset,
b3f6fb1130cd fixes thanks to cppcheck Sebastien Jodogne <s.jodogne@gmail.com> parents: 876 diff changeset	245 unsigned int frame)
b3f6fb1130cd fixes thanks to cppcheck Sebastien Jodogne <s.jodogne@gmail.com> parents: 876 diff changeset	246 {
b3f6fb1130cd fixes thanks to cppcheck Sebastien Jodogne <s.jodogne@gmail.com> parents: 876 diff changeset	247 psmct_.clear();
b3f6fb1130cd fixes thanks to cppcheck Sebastien Jodogne <s.jodogne@gmail.com> parents: 876 diff changeset	248 slowAccessor_.reset(NULL);
b3f6fb1130cd fixes thanks to cppcheck Sebastien Jodogne <s.jodogne@gmail.com> parents: 876 diff changeset	249
b3f6fb1130cd fixes thanks to cppcheck Sebastien Jodogne <s.jodogne@gmail.com> parents: 876 diff changeset	250 // See also: http://support.dcmtk.org/wiki/dcmtk/howto/accessing-compressed-data
b3f6fb1130cd fixes thanks to cppcheck Sebastien Jodogne <s.jodogne@gmail.com> parents: 876 diff changeset	251
b3f6fb1130cd fixes thanks to cppcheck Sebastien Jodogne <s.jodogne@gmail.com> parents: 876 diff changeset	252 DicomMap m;
4136 2724977419fb Fix DICOM SCP filters if some query tag has more than 256 characters Sebastien Jodogne <s.jodogne@gmail.com> parents: 4119 diff changeset	253 FromDcmtkBridge::ExtractDicomSummary(m, dataset, 0 /* don't truncate tags */);
942 b3f6fb1130cd fixes thanks to cppcheck Sebastien Jodogne <s.jodogne@gmail.com> parents: 876 diff changeset	254
b3f6fb1130cd fixes thanks to cppcheck Sebastien Jodogne <s.jodogne@gmail.com> parents: 876 diff changeset	255 /**
b3f6fb1130cd fixes thanks to cppcheck Sebastien Jodogne <s.jodogne@gmail.com> parents: 876 diff changeset	256 * Create an accessor to the raw values of the DICOM image.
b3f6fb1130cd fixes thanks to cppcheck Sebastien Jodogne <s.jodogne@gmail.com> parents: 876 diff changeset	257 **/
b3f6fb1130cd fixes thanks to cppcheck Sebastien Jodogne <s.jodogne@gmail.com> parents: 876 diff changeset	258
b3f6fb1130cd fixes thanks to cppcheck Sebastien Jodogne <s.jodogne@gmail.com> parents: 876 diff changeset	259 DcmElement* e;
b3f6fb1130cd fixes thanks to cppcheck Sebastien Jodogne <s.jodogne@gmail.com> parents: 876 diff changeset	260 if (dataset.findAndGetElement(ToDcmtkBridge::Convert(DICOM_TAG_PIXEL_DATA), e).good() &&
b3f6fb1130cd fixes thanks to cppcheck Sebastien Jodogne <s.jodogne@gmail.com> parents: 876 diff changeset	261 e != NULL)
b3f6fb1130cd fixes thanks to cppcheck Sebastien Jodogne <s.jodogne@gmail.com> parents: 876 diff changeset	262 {
b3f6fb1130cd fixes thanks to cppcheck Sebastien Jodogne <s.jodogne@gmail.com> parents: 876 diff changeset	263 Uint8* pixData = NULL;
b3f6fb1130cd fixes thanks to cppcheck Sebastien Jodogne <s.jodogne@gmail.com> parents: 876 diff changeset	264 if (e->getUint8Array(pixData) == EC_Normal)
b3f6fb1130cd fixes thanks to cppcheck Sebastien Jodogne <s.jodogne@gmail.com> parents: 876 diff changeset	265 {
b3f6fb1130cd fixes thanks to cppcheck Sebastien Jodogne <s.jodogne@gmail.com> parents: 876 diff changeset	266 slowAccessor_.reset(new DicomIntegerPixelAccessor(m, pixData, e->getLength()));
b3f6fb1130cd fixes thanks to cppcheck Sebastien Jodogne <s.jodogne@gmail.com> parents: 876 diff changeset	267 }
b3f6fb1130cd fixes thanks to cppcheck Sebastien Jodogne <s.jodogne@gmail.com> parents: 876 diff changeset	268 }
b3f6fb1130cd fixes thanks to cppcheck Sebastien Jodogne <s.jodogne@gmail.com> parents: 876 diff changeset	269 else if (DecodePsmctRle1(psmct_, dataset))
b3f6fb1130cd fixes thanks to cppcheck Sebastien Jodogne <s.jodogne@gmail.com> parents: 876 diff changeset	270 {
b3f6fb1130cd fixes thanks to cppcheck Sebastien Jodogne <s.jodogne@gmail.com> parents: 876 diff changeset	271 LOG(INFO) << "The PMSCT_RLE1 decoding has succeeded";
b3f6fb1130cd fixes thanks to cppcheck Sebastien Jodogne <s.jodogne@gmail.com> parents: 876 diff changeset	272 Uint8* pixData = NULL;
b3f6fb1130cd fixes thanks to cppcheck Sebastien Jodogne <s.jodogne@gmail.com> parents: 876 diff changeset	273 if (psmct_.size() > 0)
b3f6fb1130cd fixes thanks to cppcheck Sebastien Jodogne <s.jodogne@gmail.com> parents: 876 diff changeset	274 {
b3f6fb1130cd fixes thanks to cppcheck Sebastien Jodogne <s.jodogne@gmail.com> parents: 876 diff changeset	275 pixData = reinterpret_cast<Uint8*>(&psmct_[0]);
b3f6fb1130cd fixes thanks to cppcheck Sebastien Jodogne <s.jodogne@gmail.com> parents: 876 diff changeset	276 }
b3f6fb1130cd fixes thanks to cppcheck Sebastien Jodogne <s.jodogne@gmail.com> parents: 876 diff changeset	277
b3f6fb1130cd fixes thanks to cppcheck Sebastien Jodogne <s.jodogne@gmail.com> parents: 876 diff changeset	278 slowAccessor_.reset(new DicomIntegerPixelAccessor(m, pixData, psmct_.size()));
b3f6fb1130cd fixes thanks to cppcheck Sebastien Jodogne <s.jodogne@gmail.com> parents: 876 diff changeset	279 }
b3f6fb1130cd fixes thanks to cppcheck Sebastien Jodogne <s.jodogne@gmail.com> parents: 876 diff changeset	280
b3f6fb1130cd fixes thanks to cppcheck Sebastien Jodogne <s.jodogne@gmail.com> parents: 876 diff changeset	281 if (slowAccessor_.get() == NULL)
b3f6fb1130cd fixes thanks to cppcheck Sebastien Jodogne <s.jodogne@gmail.com> parents: 876 diff changeset	282 {
b3f6fb1130cd fixes thanks to cppcheck Sebastien Jodogne <s.jodogne@gmail.com> parents: 876 diff changeset	283 throw OrthancException(ErrorCode_BadFileFormat);
b3f6fb1130cd fixes thanks to cppcheck Sebastien Jodogne <s.jodogne@gmail.com> parents: 876 diff changeset	284 }
b3f6fb1130cd fixes thanks to cppcheck Sebastien Jodogne <s.jodogne@gmail.com> parents: 876 diff changeset	285
b3f6fb1130cd fixes thanks to cppcheck Sebastien Jodogne <s.jodogne@gmail.com> parents: 876 diff changeset	286 slowAccessor_->SetCurrentFrame(frame);
b3f6fb1130cd fixes thanks to cppcheck Sebastien Jodogne <s.jodogne@gmail.com> parents: 876 diff changeset	287 }
b3f6fb1130cd fixes thanks to cppcheck Sebastien Jodogne <s.jodogne@gmail.com> parents: 876 diff changeset	288
b3f6fb1130cd fixes thanks to cppcheck Sebastien Jodogne <s.jodogne@gmail.com> parents: 876 diff changeset	289 unsigned int GetWidth() const
b3f6fb1130cd fixes thanks to cppcheck Sebastien Jodogne <s.jodogne@gmail.com> parents: 876 diff changeset	290 {
b3f6fb1130cd fixes thanks to cppcheck Sebastien Jodogne <s.jodogne@gmail.com> parents: 876 diff changeset	291 assert(slowAccessor_.get() != NULL);
b3f6fb1130cd fixes thanks to cppcheck Sebastien Jodogne <s.jodogne@gmail.com> parents: 876 diff changeset	292 return slowAccessor_->GetInformation().GetWidth();
b3f6fb1130cd fixes thanks to cppcheck Sebastien Jodogne <s.jodogne@gmail.com> parents: 876 diff changeset	293 }
b3f6fb1130cd fixes thanks to cppcheck Sebastien Jodogne <s.jodogne@gmail.com> parents: 876 diff changeset	294
b3f6fb1130cd fixes thanks to cppcheck Sebastien Jodogne <s.jodogne@gmail.com> parents: 876 diff changeset	295 unsigned int GetHeight() const
b3f6fb1130cd fixes thanks to cppcheck Sebastien Jodogne <s.jodogne@gmail.com> parents: 876 diff changeset	296 {
b3f6fb1130cd fixes thanks to cppcheck Sebastien Jodogne <s.jodogne@gmail.com> parents: 876 diff changeset	297 assert(slowAccessor_.get() != NULL);
b3f6fb1130cd fixes thanks to cppcheck Sebastien Jodogne <s.jodogne@gmail.com> parents: 876 diff changeset	298 return slowAccessor_->GetInformation().GetHeight();
b3f6fb1130cd fixes thanks to cppcheck Sebastien Jodogne <s.jodogne@gmail.com> parents: 876 diff changeset	299 }
b3f6fb1130cd fixes thanks to cppcheck Sebastien Jodogne <s.jodogne@gmail.com> parents: 876 diff changeset	300
b3f6fb1130cd fixes thanks to cppcheck Sebastien Jodogne <s.jodogne@gmail.com> parents: 876 diff changeset	301 unsigned int GetChannelCount() const
b3f6fb1130cd fixes thanks to cppcheck Sebastien Jodogne <s.jodogne@gmail.com> parents: 876 diff changeset	302 {
b3f6fb1130cd fixes thanks to cppcheck Sebastien Jodogne <s.jodogne@gmail.com> parents: 876 diff changeset	303 assert(slowAccessor_.get() != NULL);
b3f6fb1130cd fixes thanks to cppcheck Sebastien Jodogne <s.jodogne@gmail.com> parents: 876 diff changeset	304 return slowAccessor_->GetInformation().GetChannelCount();
b3f6fb1130cd fixes thanks to cppcheck Sebastien Jodogne <s.jodogne@gmail.com> parents: 876 diff changeset	305 }
b3f6fb1130cd fixes thanks to cppcheck Sebastien Jodogne <s.jodogne@gmail.com> parents: 876 diff changeset	306
b3f6fb1130cd fixes thanks to cppcheck Sebastien Jodogne <s.jodogne@gmail.com> parents: 876 diff changeset	307 const DicomIntegerPixelAccessor& GetAccessor() const
b3f6fb1130cd fixes thanks to cppcheck Sebastien Jodogne <s.jodogne@gmail.com> parents: 876 diff changeset	308 {
b3f6fb1130cd fixes thanks to cppcheck Sebastien Jodogne <s.jodogne@gmail.com> parents: 876 diff changeset	309 assert(slowAccessor_.get() != NULL);
b3f6fb1130cd fixes thanks to cppcheck Sebastien Jodogne <s.jodogne@gmail.com> parents: 876 diff changeset	310 return *slowAccessor_;
b3f6fb1130cd fixes thanks to cppcheck Sebastien Jodogne <s.jodogne@gmail.com> parents: 876 diff changeset	311 }
b3f6fb1130cd fixes thanks to cppcheck Sebastien Jodogne <s.jodogne@gmail.com> parents: 876 diff changeset	312
1190 851a55d183c9 fix issue 22 Sebastien Jodogne <s.jodogne@gmail.com> parents: 1015 diff changeset	313 unsigned int GetSize() const
942 b3f6fb1130cd fixes thanks to cppcheck Sebastien Jodogne <s.jodogne@gmail.com> parents: 876 diff changeset	314 {
1190 851a55d183c9 fix issue 22 Sebastien Jodogne <s.jodogne@gmail.com> parents: 1015 diff changeset	315 assert(slowAccessor_.get() != NULL);
851a55d183c9 fix issue 22 Sebastien Jodogne <s.jodogne@gmail.com> parents: 1015 diff changeset	316 return slowAccessor_->GetSize();
942 b3f6fb1130cd fixes thanks to cppcheck Sebastien Jodogne <s.jodogne@gmail.com> parents: 876 diff changeset	317 }
b3f6fb1130cd fixes thanks to cppcheck Sebastien Jodogne <s.jodogne@gmail.com> parents: 876 diff changeset	318 };
b3f6fb1130cd fixes thanks to cppcheck Sebastien Jodogne <s.jodogne@gmail.com> parents: 876 diff changeset	319
b3f6fb1130cd fixes thanks to cppcheck Sebastien Jodogne <s.jodogne@gmail.com> parents: 876 diff changeset	320
1905 8b1baa2315b8 Huge speedup if decoding the family of JPEG transfer syntaxes Sebastien Jodogne <s.jodogne@gmail.com> parents: 1904 diff changeset	321 ImageAccessor* DicomImageDecoder::CreateImage(DcmDataset& dataset,
8b1baa2315b8 Huge speedup if decoding the family of JPEG transfer syntaxes Sebastien Jodogne <s.jodogne@gmail.com> parents: 1904 diff changeset	322 bool ignorePhotometricInterpretation)
845 48016722c770 refactoring Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	323 {
854 ff530685e46a fast version of image copy Sebastien Jodogne <s.jodogne@gmail.com> parents: 853 diff changeset	324 DicomMap m;
4136 2724977419fb Fix DICOM SCP filters if some query tag has more than 256 characters Sebastien Jodogne <s.jodogne@gmail.com> parents: 4119 diff changeset	325 FromDcmtkBridge::ExtractDicomSummary(m, dataset, 0 /* don't truncate tags */);
845 48016722c770 refactoring Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	326
854 ff530685e46a fast version of image copy Sebastien Jodogne <s.jodogne@gmail.com> parents: 853 diff changeset	327 DicomImageInformation info(m);
ff530685e46a fast version of image copy Sebastien Jodogne <s.jodogne@gmail.com> parents: 853 diff changeset	328 PixelFormat format;
ff530685e46a fast version of image copy Sebastien Jodogne <s.jodogne@gmail.com> parents: 853 diff changeset	329
1905 8b1baa2315b8 Huge speedup if decoding the family of JPEG transfer syntaxes Sebastien Jodogne <s.jodogne@gmail.com> parents: 1904 diff changeset	330 if (!info.ExtractPixelFormat(format, ignorePhotometricInterpretation))
845 48016722c770 refactoring Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	331 {
854 ff530685e46a fast version of image copy Sebastien Jodogne <s.jodogne@gmail.com> parents: 853 diff changeset	332 LOG(WARNING) << "Unsupported DICOM image: " << info.GetBitsStored()
ff530685e46a fast version of image copy Sebastien Jodogne <s.jodogne@gmail.com> parents: 853 diff changeset	333 << "bpp, " << info.GetChannelCount() << " channels, "
860 80c7e53a69b5 bugfix Sebastien Jodogne <s.jodogne@gmail.com> parents: 859 diff changeset	334 << (info.IsSigned() ? "signed" : "unsigned")
1206 f5b0207967bc Fix issue 19 (YBR_FULL are decoded incorrectly) Sebastien Jodogne <s.jodogne@gmail.com> parents: 1190 diff changeset	335 << (info.IsPlanar() ? ", planar, " : ", non-planar, ")
f5b0207967bc Fix issue 19 (YBR_FULL are decoded incorrectly) Sebastien Jodogne <s.jodogne@gmail.com> parents: 1190 diff changeset	336 << EnumerationToString(info.GetPhotometricInterpretation())
f5b0207967bc Fix issue 19 (YBR_FULL are decoded incorrectly) Sebastien Jodogne <s.jodogne@gmail.com> parents: 1190 diff changeset	337 << " photometric interpretation";
845 48016722c770 refactoring Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	338 throw OrthancException(ErrorCode_NotImplemented);
48016722c770 refactoring Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	339 }
874 87791ebc1f50 download matlab images Sebastien Jodogne <s.jodogne@gmail.com> parents: 863 diff changeset	340
2107 88831c3edd8f fix Sebastien Jodogne <s.jodogne@gmail.com> parents: 1944 diff changeset	341 return new Image(format, info.GetWidth(), info.GetHeight(), false);
845 48016722c770 refactoring Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	342 }
48016722c770 refactoring Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	343
48016722c770 refactoring Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	344
847 03ea55da7429 fully functional JPEG-LS conversion Sebastien Jodogne <s.jodogne@gmail.com> parents: 846 diff changeset	345 template <typename PixelType>
03ea55da7429 fully functional JPEG-LS conversion Sebastien Jodogne <s.jodogne@gmail.com> parents: 846 diff changeset	346 static void CopyPixels(ImageAccessor& target,
03ea55da7429 fully functional JPEG-LS conversion Sebastien Jodogne <s.jodogne@gmail.com> parents: 846 diff changeset	347 const DicomIntegerPixelAccessor& source)
03ea55da7429 fully functional JPEG-LS conversion Sebastien Jodogne <s.jodogne@gmail.com> parents: 846 diff changeset	348 {
3525 8c66c9c2257b fix ImageProcessing::ShiftScale() on float images Sebastien Jodogne <s.jodogne@gmail.com> parents: 3060 diff changeset	349 // WARNING - "::min()" should be replaced by "::lowest()" if
8c66c9c2257b fix ImageProcessing::ShiftScale() on float images Sebastien Jodogne <s.jodogne@gmail.com> parents: 3060 diff changeset	350 // dealing with float or double (which is not the case so far)
847 03ea55da7429 fully functional JPEG-LS conversion Sebastien Jodogne <s.jodogne@gmail.com> parents: 846 diff changeset	351 const PixelType minValue = std::numeric_limits<PixelType>::min();
03ea55da7429 fully functional JPEG-LS conversion Sebastien Jodogne <s.jodogne@gmail.com> parents: 846 diff changeset	352 const PixelType maxValue = std::numeric_limits<PixelType>::max();
03ea55da7429 fully functional JPEG-LS conversion Sebastien Jodogne <s.jodogne@gmail.com> parents: 846 diff changeset	353
853 839be3022203 DicomImageInformation Sebastien Jodogne <s.jodogne@gmail.com> parents: 852 diff changeset	354 for (unsigned int y = 0; y < source.GetInformation().GetHeight(); y++)
847 03ea55da7429 fully functional JPEG-LS conversion Sebastien Jodogne <s.jodogne@gmail.com> parents: 846 diff changeset	355 {
03ea55da7429 fully functional JPEG-LS conversion Sebastien Jodogne <s.jodogne@gmail.com> parents: 846 diff changeset	356 PixelType* pixel = reinterpret_cast<PixelType*>(target.GetRow(y));
853 839be3022203 DicomImageInformation Sebastien Jodogne <s.jodogne@gmail.com> parents: 852 diff changeset	357 for (unsigned int x = 0; x < source.GetInformation().GetWidth(); x++)
847 03ea55da7429 fully functional JPEG-LS conversion Sebastien Jodogne <s.jodogne@gmail.com> parents: 846 diff changeset	358 {
853 839be3022203 DicomImageInformation Sebastien Jodogne <s.jodogne@gmail.com> parents: 852 diff changeset	359 for (unsigned int c = 0; c < source.GetInformation().GetChannelCount(); c++, pixel++)
847 03ea55da7429 fully functional JPEG-LS conversion Sebastien Jodogne <s.jodogne@gmail.com> parents: 846 diff changeset	360 {
03ea55da7429 fully functional JPEG-LS conversion Sebastien Jodogne <s.jodogne@gmail.com> parents: 846 diff changeset	361 int32_t v = source.GetValue(x, y, c);
03ea55da7429 fully functional JPEG-LS conversion Sebastien Jodogne <s.jodogne@gmail.com> parents: 846 diff changeset	362 if (v < static_cast<int32_t>(minValue))
03ea55da7429 fully functional JPEG-LS conversion Sebastien Jodogne <s.jodogne@gmail.com> parents: 846 diff changeset	363 {
03ea55da7429 fully functional JPEG-LS conversion Sebastien Jodogne <s.jodogne@gmail.com> parents: 846 diff changeset	364 *pixel = minValue;
03ea55da7429 fully functional JPEG-LS conversion Sebastien Jodogne <s.jodogne@gmail.com> parents: 846 diff changeset	365 }
03ea55da7429 fully functional JPEG-LS conversion Sebastien Jodogne <s.jodogne@gmail.com> parents: 846 diff changeset	366 else if (v > static_cast<int32_t>(maxValue))
03ea55da7429 fully functional JPEG-LS conversion Sebastien Jodogne <s.jodogne@gmail.com> parents: 846 diff changeset	367 {
03ea55da7429 fully functional JPEG-LS conversion Sebastien Jodogne <s.jodogne@gmail.com> parents: 846 diff changeset	368 *pixel = maxValue;
03ea55da7429 fully functional JPEG-LS conversion Sebastien Jodogne <s.jodogne@gmail.com> parents: 846 diff changeset	369 }
03ea55da7429 fully functional JPEG-LS conversion Sebastien Jodogne <s.jodogne@gmail.com> parents: 846 diff changeset	370 else
03ea55da7429 fully functional JPEG-LS conversion Sebastien Jodogne <s.jodogne@gmail.com> parents: 846 diff changeset	371 {
03ea55da7429 fully functional JPEG-LS conversion Sebastien Jodogne <s.jodogne@gmail.com> parents: 846 diff changeset	372 *pixel = static_cast<PixelType>(v);
03ea55da7429 fully functional JPEG-LS conversion Sebastien Jodogne <s.jodogne@gmail.com> parents: 846 diff changeset	373 }
03ea55da7429 fully functional JPEG-LS conversion Sebastien Jodogne <s.jodogne@gmail.com> parents: 846 diff changeset	374 }
03ea55da7429 fully functional JPEG-LS conversion Sebastien Jodogne <s.jodogne@gmail.com> parents: 846 diff changeset	375 }
03ea55da7429 fully functional JPEG-LS conversion Sebastien Jodogne <s.jodogne@gmail.com> parents: 846 diff changeset	376 }
03ea55da7429 fully functional JPEG-LS conversion Sebastien Jodogne <s.jodogne@gmail.com> parents: 846 diff changeset	377 }
03ea55da7429 fully functional JPEG-LS conversion Sebastien Jodogne <s.jodogne@gmail.com> parents: 846 diff changeset	378
03ea55da7429 fully functional JPEG-LS conversion Sebastien Jodogne <s.jodogne@gmail.com> parents: 846 diff changeset	379
3712 2a170a8f1faf replacing std::auto_ptr by std::unique_ptr Sebastien Jodogne <s.jodogne@gmail.com> parents: 3640 diff changeset	380 static ImageAccessor* DecodeLookupTable(std::unique_ptr<ImageAccessor>& target,
2423 5a7c5c541a1d Built-in decoding of palette images Sebastien Jodogne <s.jodogne@gmail.com> parents: 2415 diff changeset	381 const DicomImageInformation& info,
5a7c5c541a1d Built-in decoding of palette images Sebastien Jodogne <s.jodogne@gmail.com> parents: 2415 diff changeset	382 DcmDataset& dataset,
5a7c5c541a1d Built-in decoding of palette images Sebastien Jodogne <s.jodogne@gmail.com> parents: 2415 diff changeset	383 const uint8_t* pixelData,
5a7c5c541a1d Built-in decoding of palette images Sebastien Jodogne <s.jodogne@gmail.com> parents: 2415 diff changeset	384 unsigned long pixelLength)
5a7c5c541a1d Built-in decoding of palette images Sebastien Jodogne <s.jodogne@gmail.com> parents: 2415 diff changeset	385 {
5a7c5c541a1d Built-in decoding of palette images Sebastien Jodogne <s.jodogne@gmail.com> parents: 2415 diff changeset	386 LOG(INFO) << "Decoding a lookup table";
5a7c5c541a1d Built-in decoding of palette images Sebastien Jodogne <s.jodogne@gmail.com> parents: 2415 diff changeset	387
5a7c5c541a1d Built-in decoding of palette images Sebastien Jodogne <s.jodogne@gmail.com> parents: 2415 diff changeset	388 OFString r, g, b;
5a7c5c541a1d Built-in decoding of palette images Sebastien Jodogne <s.jodogne@gmail.com> parents: 2415 diff changeset	389 PixelFormat format;
5a7c5c541a1d Built-in decoding of palette images Sebastien Jodogne <s.jodogne@gmail.com> parents: 2415 diff changeset	390 const uint16_t* lutRed = NULL;
5a7c5c541a1d Built-in decoding of palette images Sebastien Jodogne <s.jodogne@gmail.com> parents: 2415 diff changeset	391 const uint16_t* lutGreen = NULL;
5a7c5c541a1d Built-in decoding of palette images Sebastien Jodogne <s.jodogne@gmail.com> parents: 2415 diff changeset	392 const uint16_t* lutBlue = NULL;
5a7c5c541a1d Built-in decoding of palette images Sebastien Jodogne <s.jodogne@gmail.com> parents: 2415 diff changeset	393 unsigned long rc = 0;
5a7c5c541a1d Built-in decoding of palette images Sebastien Jodogne <s.jodogne@gmail.com> parents: 2415 diff changeset	394 unsigned long gc = 0;
5a7c5c541a1d Built-in decoding of palette images Sebastien Jodogne <s.jodogne@gmail.com> parents: 2415 diff changeset	395 unsigned long bc = 0;
5a7c5c541a1d Built-in decoding of palette images Sebastien Jodogne <s.jodogne@gmail.com> parents: 2415 diff changeset	396
5a7c5c541a1d Built-in decoding of palette images Sebastien Jodogne <s.jodogne@gmail.com> parents: 2415 diff changeset	397 if (pixelData == NULL &&
5a7c5c541a1d Built-in decoding of palette images Sebastien Jodogne <s.jodogne@gmail.com> parents: 2415 diff changeset	398 !dataset.findAndGetUint8Array(DCM_PixelData, pixelData, &pixelLength).good())
5a7c5c541a1d Built-in decoding of palette images Sebastien Jodogne <s.jodogne@gmail.com> parents: 2415 diff changeset	399 {
5a7c5c541a1d Built-in decoding of palette images Sebastien Jodogne <s.jodogne@gmail.com> parents: 2415 diff changeset	400 throw OrthancException(ErrorCode_NotImplemented);
5a7c5c541a1d Built-in decoding of palette images Sebastien Jodogne <s.jodogne@gmail.com> parents: 2415 diff changeset	401 }
5a7c5c541a1d Built-in decoding of palette images Sebastien Jodogne <s.jodogne@gmail.com> parents: 2415 diff changeset	402
5a7c5c541a1d Built-in decoding of palette images Sebastien Jodogne <s.jodogne@gmail.com> parents: 2415 diff changeset	403 if (info.IsPlanar() \|\|
5a7c5c541a1d Built-in decoding of palette images Sebastien Jodogne <s.jodogne@gmail.com> parents: 2415 diff changeset	404 info.GetNumberOfFrames() != 1 \|\|
5a7c5c541a1d Built-in decoding of palette images Sebastien Jodogne <s.jodogne@gmail.com> parents: 2415 diff changeset	405 !info.ExtractPixelFormat(format, false) \|\|
5a7c5c541a1d Built-in decoding of palette images Sebastien Jodogne <s.jodogne@gmail.com> parents: 2415 diff changeset	406 !dataset.findAndGetOFStringArray(DCM_BluePaletteColorLookupTableDescriptor, b).good() \|\|
5a7c5c541a1d Built-in decoding of palette images Sebastien Jodogne <s.jodogne@gmail.com> parents: 2415 diff changeset	407 !dataset.findAndGetOFStringArray(DCM_GreenPaletteColorLookupTableDescriptor, g).good() \|\|
5a7c5c541a1d Built-in decoding of palette images Sebastien Jodogne <s.jodogne@gmail.com> parents: 2415 diff changeset	408 !dataset.findAndGetOFStringArray(DCM_RedPaletteColorLookupTableDescriptor, r).good() \|\|
5a7c5c541a1d Built-in decoding of palette images Sebastien Jodogne <s.jodogne@gmail.com> parents: 2415 diff changeset	409 !dataset.findAndGetUint16Array(DCM_BluePaletteColorLookupTableData, lutBlue, &bc).good() \|\|
5a7c5c541a1d Built-in decoding of palette images Sebastien Jodogne <s.jodogne@gmail.com> parents: 2415 diff changeset	410 !dataset.findAndGetUint16Array(DCM_GreenPaletteColorLookupTableData, lutGreen, &gc).good() \|\|
5a7c5c541a1d Built-in decoding of palette images Sebastien Jodogne <s.jodogne@gmail.com> parents: 2415 diff changeset	411 !dataset.findAndGetUint16Array(DCM_RedPaletteColorLookupTableData, lutRed, &rc).good() \|\|
5a7c5c541a1d Built-in decoding of palette images Sebastien Jodogne <s.jodogne@gmail.com> parents: 2415 diff changeset	412 r != g \|\|
5a7c5c541a1d Built-in decoding of palette images Sebastien Jodogne <s.jodogne@gmail.com> parents: 2415 diff changeset	413 r != b \|\|
5a7c5c541a1d Built-in decoding of palette images Sebastien Jodogne <s.jodogne@gmail.com> parents: 2415 diff changeset	414 g != b \|\|
5a7c5c541a1d Built-in decoding of palette images Sebastien Jodogne <s.jodogne@gmail.com> parents: 2415 diff changeset	415 lutRed == NULL \|\|
5a7c5c541a1d Built-in decoding of palette images Sebastien Jodogne <s.jodogne@gmail.com> parents: 2415 diff changeset	416 lutGreen == NULL \|\|
5a7c5c541a1d Built-in decoding of palette images Sebastien Jodogne <s.jodogne@gmail.com> parents: 2415 diff changeset	417 lutBlue == NULL \|\|
5a7c5c541a1d Built-in decoding of palette images Sebastien Jodogne <s.jodogne@gmail.com> parents: 2415 diff changeset	418 pixelData == NULL)
5a7c5c541a1d Built-in decoding of palette images Sebastien Jodogne <s.jodogne@gmail.com> parents: 2415 diff changeset	419 {
5a7c5c541a1d Built-in decoding of palette images Sebastien Jodogne <s.jodogne@gmail.com> parents: 2415 diff changeset	420 throw OrthancException(ErrorCode_NotImplemented);
5a7c5c541a1d Built-in decoding of palette images Sebastien Jodogne <s.jodogne@gmail.com> parents: 2415 diff changeset	421 }
5a7c5c541a1d Built-in decoding of palette images Sebastien Jodogne <s.jodogne@gmail.com> parents: 2415 diff changeset	422
5a7c5c541a1d Built-in decoding of palette images Sebastien Jodogne <s.jodogne@gmail.com> parents: 2415 diff changeset	423 switch (format)
5a7c5c541a1d Built-in decoding of palette images Sebastien Jodogne <s.jodogne@gmail.com> parents: 2415 diff changeset	424 {
5a7c5c541a1d Built-in decoding of palette images Sebastien Jodogne <s.jodogne@gmail.com> parents: 2415 diff changeset	425 case PixelFormat_RGB24:
5a7c5c541a1d Built-in decoding of palette images Sebastien Jodogne <s.jodogne@gmail.com> parents: 2415 diff changeset	426 {
5a7c5c541a1d Built-in decoding of palette images Sebastien Jodogne <s.jodogne@gmail.com> parents: 2415 diff changeset	427 if (r != "256\\0\\16" \|\|
5a7c5c541a1d Built-in decoding of palette images Sebastien Jodogne <s.jodogne@gmail.com> parents: 2415 diff changeset	428 rc != 256 \|\|
5a7c5c541a1d Built-in decoding of palette images Sebastien Jodogne <s.jodogne@gmail.com> parents: 2415 diff changeset	429 gc != 256 \|\|
5a7c5c541a1d Built-in decoding of palette images Sebastien Jodogne <s.jodogne@gmail.com> parents: 2415 diff changeset	430 bc != 256 \|\|
5a7c5c541a1d Built-in decoding of palette images Sebastien Jodogne <s.jodogne@gmail.com> parents: 2415 diff changeset	431 pixelLength != target->GetWidth() * target->GetHeight())
5a7c5c541a1d Built-in decoding of palette images Sebastien Jodogne <s.jodogne@gmail.com> parents: 2415 diff changeset	432 {
5a7c5c541a1d Built-in decoding of palette images Sebastien Jodogne <s.jodogne@gmail.com> parents: 2415 diff changeset	433 throw OrthancException(ErrorCode_NotImplemented);
5a7c5c541a1d Built-in decoding of palette images Sebastien Jodogne <s.jodogne@gmail.com> parents: 2415 diff changeset	434 }
5a7c5c541a1d Built-in decoding of palette images Sebastien Jodogne <s.jodogne@gmail.com> parents: 2415 diff changeset	435
5a7c5c541a1d Built-in decoding of palette images Sebastien Jodogne <s.jodogne@gmail.com> parents: 2415 diff changeset	436 const uint8_t* source = reinterpret_cast<const uint8_t*>(pixelData);
5a7c5c541a1d Built-in decoding of palette images Sebastien Jodogne <s.jodogne@gmail.com> parents: 2415 diff changeset	437
5a7c5c541a1d Built-in decoding of palette images Sebastien Jodogne <s.jodogne@gmail.com> parents: 2415 diff changeset	438 for (unsigned int y = 0; y < target->GetHeight(); y++)
5a7c5c541a1d Built-in decoding of palette images Sebastien Jodogne <s.jodogne@gmail.com> parents: 2415 diff changeset	439 {
5a7c5c541a1d Built-in decoding of palette images Sebastien Jodogne <s.jodogne@gmail.com> parents: 2415 diff changeset	440 uint8_t* p = reinterpret_cast<uint8_t*>(target->GetRow(y));
5a7c5c541a1d Built-in decoding of palette images Sebastien Jodogne <s.jodogne@gmail.com> parents: 2415 diff changeset	441
5a7c5c541a1d Built-in decoding of palette images Sebastien Jodogne <s.jodogne@gmail.com> parents: 2415 diff changeset	442 for (unsigned int x = 0; x < target->GetWidth(); x++)
5a7c5c541a1d Built-in decoding of palette images Sebastien Jodogne <s.jodogne@gmail.com> parents: 2415 diff changeset	443 {
5a7c5c541a1d Built-in decoding of palette images Sebastien Jodogne <s.jodogne@gmail.com> parents: 2415 diff changeset	444 p[0] = lutRed[*source] >> 8;
5a7c5c541a1d Built-in decoding of palette images Sebastien Jodogne <s.jodogne@gmail.com> parents: 2415 diff changeset	445 p[1] = lutGreen[*source] >> 8;
5a7c5c541a1d Built-in decoding of palette images Sebastien Jodogne <s.jodogne@gmail.com> parents: 2415 diff changeset	446 p[2] = lutBlue[*source] >> 8;
5a7c5c541a1d Built-in decoding of palette images Sebastien Jodogne <s.jodogne@gmail.com> parents: 2415 diff changeset	447 source++;
5a7c5c541a1d Built-in decoding of palette images Sebastien Jodogne <s.jodogne@gmail.com> parents: 2415 diff changeset	448 p += 3;
5a7c5c541a1d Built-in decoding of palette images Sebastien Jodogne <s.jodogne@gmail.com> parents: 2415 diff changeset	449 }
5a7c5c541a1d Built-in decoding of palette images Sebastien Jodogne <s.jodogne@gmail.com> parents: 2415 diff changeset	450 }
5a7c5c541a1d Built-in decoding of palette images Sebastien Jodogne <s.jodogne@gmail.com> parents: 2415 diff changeset	451
5a7c5c541a1d Built-in decoding of palette images Sebastien Jodogne <s.jodogne@gmail.com> parents: 2415 diff changeset	452 return target.release();
5a7c5c541a1d Built-in decoding of palette images Sebastien Jodogne <s.jodogne@gmail.com> parents: 2415 diff changeset	453 }
5a7c5c541a1d Built-in decoding of palette images Sebastien Jodogne <s.jodogne@gmail.com> parents: 2415 diff changeset	454
5a7c5c541a1d Built-in decoding of palette images Sebastien Jodogne <s.jodogne@gmail.com> parents: 2415 diff changeset	455 case PixelFormat_RGB48:
5a7c5c541a1d Built-in decoding of palette images Sebastien Jodogne <s.jodogne@gmail.com> parents: 2415 diff changeset	456 {
5a7c5c541a1d Built-in decoding of palette images Sebastien Jodogne <s.jodogne@gmail.com> parents: 2415 diff changeset	457 if (r != "0\\0\\16" \|\|
5a7c5c541a1d Built-in decoding of palette images Sebastien Jodogne <s.jodogne@gmail.com> parents: 2415 diff changeset	458 rc != 65536 \|\|
5a7c5c541a1d Built-in decoding of palette images Sebastien Jodogne <s.jodogne@gmail.com> parents: 2415 diff changeset	459 gc != 65536 \|\|
5a7c5c541a1d Built-in decoding of palette images Sebastien Jodogne <s.jodogne@gmail.com> parents: 2415 diff changeset	460 bc != 65536 \|\|
5a7c5c541a1d Built-in decoding of palette images Sebastien Jodogne <s.jodogne@gmail.com> parents: 2415 diff changeset	461 pixelLength != 2 * target->GetWidth() * target->GetHeight())
5a7c5c541a1d Built-in decoding of palette images Sebastien Jodogne <s.jodogne@gmail.com> parents: 2415 diff changeset	462 {
5a7c5c541a1d Built-in decoding of palette images Sebastien Jodogne <s.jodogne@gmail.com> parents: 2415 diff changeset	463 throw OrthancException(ErrorCode_NotImplemented);
5a7c5c541a1d Built-in decoding of palette images Sebastien Jodogne <s.jodogne@gmail.com> parents: 2415 diff changeset	464 }
5a7c5c541a1d Built-in decoding of palette images Sebastien Jodogne <s.jodogne@gmail.com> parents: 2415 diff changeset	465
5a7c5c541a1d Built-in decoding of palette images Sebastien Jodogne <s.jodogne@gmail.com> parents: 2415 diff changeset	466 const uint16_t* source = reinterpret_cast<const uint16_t*>(pixelData);
5a7c5c541a1d Built-in decoding of palette images Sebastien Jodogne <s.jodogne@gmail.com> parents: 2415 diff changeset	467
5a7c5c541a1d Built-in decoding of palette images Sebastien Jodogne <s.jodogne@gmail.com> parents: 2415 diff changeset	468 for (unsigned int y = 0; y < target->GetHeight(); y++)
5a7c5c541a1d Built-in decoding of palette images Sebastien Jodogne <s.jodogne@gmail.com> parents: 2415 diff changeset	469 {
5a7c5c541a1d Built-in decoding of palette images Sebastien Jodogne <s.jodogne@gmail.com> parents: 2415 diff changeset	470 uint16_t* p = reinterpret_cast<uint16_t*>(target->GetRow(y));
5a7c5c541a1d Built-in decoding of palette images Sebastien Jodogne <s.jodogne@gmail.com> parents: 2415 diff changeset	471
5a7c5c541a1d Built-in decoding of palette images Sebastien Jodogne <s.jodogne@gmail.com> parents: 2415 diff changeset	472 for (unsigned int x = 0; x < target->GetWidth(); x++)
5a7c5c541a1d Built-in decoding of palette images Sebastien Jodogne <s.jodogne@gmail.com> parents: 2415 diff changeset	473 {
5a7c5c541a1d Built-in decoding of palette images Sebastien Jodogne <s.jodogne@gmail.com> parents: 2415 diff changeset	474 p[0] = lutRed[*source];
5a7c5c541a1d Built-in decoding of palette images Sebastien Jodogne <s.jodogne@gmail.com> parents: 2415 diff changeset	475 p[1] = lutGreen[*source];
5a7c5c541a1d Built-in decoding of palette images Sebastien Jodogne <s.jodogne@gmail.com> parents: 2415 diff changeset	476 p[2] = lutBlue[*source];
5a7c5c541a1d Built-in decoding of palette images Sebastien Jodogne <s.jodogne@gmail.com> parents: 2415 diff changeset	477 source++;
5a7c5c541a1d Built-in decoding of palette images Sebastien Jodogne <s.jodogne@gmail.com> parents: 2415 diff changeset	478 p += 3;
5a7c5c541a1d Built-in decoding of palette images Sebastien Jodogne <s.jodogne@gmail.com> parents: 2415 diff changeset	479 }
5a7c5c541a1d Built-in decoding of palette images Sebastien Jodogne <s.jodogne@gmail.com> parents: 2415 diff changeset	480 }
5a7c5c541a1d Built-in decoding of palette images Sebastien Jodogne <s.jodogne@gmail.com> parents: 2415 diff changeset	481
5a7c5c541a1d Built-in decoding of palette images Sebastien Jodogne <s.jodogne@gmail.com> parents: 2415 diff changeset	482 return target.release();
5a7c5c541a1d Built-in decoding of palette images Sebastien Jodogne <s.jodogne@gmail.com> parents: 2415 diff changeset	483 }
5a7c5c541a1d Built-in decoding of palette images Sebastien Jodogne <s.jodogne@gmail.com> parents: 2415 diff changeset	484
5a7c5c541a1d Built-in decoding of palette images Sebastien Jodogne <s.jodogne@gmail.com> parents: 2415 diff changeset	485 default:
5a7c5c541a1d Built-in decoding of palette images Sebastien Jodogne <s.jodogne@gmail.com> parents: 2415 diff changeset	486 break;
5a7c5c541a1d Built-in decoding of palette images Sebastien Jodogne <s.jodogne@gmail.com> parents: 2415 diff changeset	487 }
5a7c5c541a1d Built-in decoding of palette images Sebastien Jodogne <s.jodogne@gmail.com> parents: 2415 diff changeset	488
5a7c5c541a1d Built-in decoding of palette images Sebastien Jodogne <s.jodogne@gmail.com> parents: 2415 diff changeset	489 throw OrthancException(ErrorCode_InternalError);
5a7c5c541a1d Built-in decoding of palette images Sebastien Jodogne <s.jodogne@gmail.com> parents: 2415 diff changeset	490 }
5a7c5c541a1d Built-in decoding of palette images Sebastien Jodogne <s.jodogne@gmail.com> parents: 2415 diff changeset	491
5a7c5c541a1d Built-in decoding of palette images Sebastien Jodogne <s.jodogne@gmail.com> parents: 2415 diff changeset	492
1826 ac5b0b4e2434 refactoring of DicomImageDecoder Sebastien Jodogne <s.jodogne@gmail.com> parents: 1824 diff changeset	493 ImageAccessor* DicomImageDecoder::DecodeUncompressedImage(DcmDataset& dataset,
1905 8b1baa2315b8 Huge speedup if decoding the family of JPEG transfer syntaxes Sebastien Jodogne <s.jodogne@gmail.com> parents: 1904 diff changeset	494 unsigned int frame)
847 03ea55da7429 fully functional JPEG-LS conversion Sebastien Jodogne <s.jodogne@gmail.com> parents: 846 diff changeset	495 {
03ea55da7429 fully functional JPEG-LS conversion Sebastien Jodogne <s.jodogne@gmail.com> parents: 846 diff changeset	496 /**
2423 5a7c5c541a1d Built-in decoding of palette images Sebastien Jodogne <s.jodogne@gmail.com> parents: 2415 diff changeset	497 * Create the target image.
847 03ea55da7429 fully functional JPEG-LS conversion Sebastien Jodogne <s.jodogne@gmail.com> parents: 846 diff changeset	498 **/
03ea55da7429 fully functional JPEG-LS conversion Sebastien Jodogne <s.jodogne@gmail.com> parents: 846 diff changeset	499
3712 2a170a8f1faf replacing std::auto_ptr by std::unique_ptr Sebastien Jodogne <s.jodogne@gmail.com> parents: 3640 diff changeset	500 std::unique_ptr<ImageAccessor> target(CreateImage(dataset, false));
847 03ea55da7429 fully functional JPEG-LS conversion Sebastien Jodogne <s.jodogne@gmail.com> parents: 846 diff changeset	501
2423 5a7c5c541a1d Built-in decoding of palette images Sebastien Jodogne <s.jodogne@gmail.com> parents: 2415 diff changeset	502 ImageSource source;
5a7c5c541a1d Built-in decoding of palette images Sebastien Jodogne <s.jodogne@gmail.com> parents: 2415 diff changeset	503 source.Setup(dataset, frame);
5a7c5c541a1d Built-in decoding of palette images Sebastien Jodogne <s.jodogne@gmail.com> parents: 2415 diff changeset	504
1826 ac5b0b4e2434 refactoring of DicomImageDecoder Sebastien Jodogne <s.jodogne@gmail.com> parents: 1824 diff changeset	505 if (source.GetWidth() != target->GetWidth() \|\|
ac5b0b4e2434 refactoring of DicomImageDecoder Sebastien Jodogne <s.jodogne@gmail.com> parents: 1824 diff changeset	506 source.GetHeight() != target->GetHeight())
847 03ea55da7429 fully functional JPEG-LS conversion Sebastien Jodogne <s.jodogne@gmail.com> parents: 846 diff changeset	507 {
03ea55da7429 fully functional JPEG-LS conversion Sebastien Jodogne <s.jodogne@gmail.com> parents: 846 diff changeset	508 throw OrthancException(ErrorCode_InternalError);
03ea55da7429 fully functional JPEG-LS conversion Sebastien Jodogne <s.jodogne@gmail.com> parents: 846 diff changeset	509 }
03ea55da7429 fully functional JPEG-LS conversion Sebastien Jodogne <s.jodogne@gmail.com> parents: 846 diff changeset	510
2423 5a7c5c541a1d Built-in decoding of palette images Sebastien Jodogne <s.jodogne@gmail.com> parents: 2415 diff changeset	511
5a7c5c541a1d Built-in decoding of palette images Sebastien Jodogne <s.jodogne@gmail.com> parents: 2415 diff changeset	512 /**
5a7c5c541a1d Built-in decoding of palette images Sebastien Jodogne <s.jodogne@gmail.com> parents: 2415 diff changeset	513 * Deal with lookup tables
5a7c5c541a1d Built-in decoding of palette images Sebastien Jodogne <s.jodogne@gmail.com> parents: 2415 diff changeset	514 **/
5a7c5c541a1d Built-in decoding of palette images Sebastien Jodogne <s.jodogne@gmail.com> parents: 2415 diff changeset	515
5a7c5c541a1d Built-in decoding of palette images Sebastien Jodogne <s.jodogne@gmail.com> parents: 2415 diff changeset	516 const DicomImageInformation& info = source.GetAccessor().GetInformation();
5a7c5c541a1d Built-in decoding of palette images Sebastien Jodogne <s.jodogne@gmail.com> parents: 2415 diff changeset	517
5a7c5c541a1d Built-in decoding of palette images Sebastien Jodogne <s.jodogne@gmail.com> parents: 2415 diff changeset	518 if (info.GetPhotometricInterpretation() == PhotometricInterpretation_Palette)
5a7c5c541a1d Built-in decoding of palette images Sebastien Jodogne <s.jodogne@gmail.com> parents: 2415 diff changeset	519 {
5a7c5c541a1d Built-in decoding of palette images Sebastien Jodogne <s.jodogne@gmail.com> parents: 2415 diff changeset	520 return DecodeLookupTable(target, info, dataset, NULL, 0);
5a7c5c541a1d Built-in decoding of palette images Sebastien Jodogne <s.jodogne@gmail.com> parents: 2415 diff changeset	521 }
5a7c5c541a1d Built-in decoding of palette images Sebastien Jodogne <s.jodogne@gmail.com> parents: 2415 diff changeset	522
847 03ea55da7429 fully functional JPEG-LS conversion Sebastien Jodogne <s.jodogne@gmail.com> parents: 846 diff changeset	523
03ea55da7429 fully functional JPEG-LS conversion Sebastien Jodogne <s.jodogne@gmail.com> parents: 846 diff changeset	524 /**
854 ff530685e46a fast version of image copy Sebastien Jodogne <s.jodogne@gmail.com> parents: 853 diff changeset	525 * If the format of the DICOM buffer is natively supported, use a
ff530685e46a fast version of image copy Sebastien Jodogne <s.jodogne@gmail.com> parents: 853 diff changeset	526 * direct access to copy its values.
ff530685e46a fast version of image copy Sebastien Jodogne <s.jodogne@gmail.com> parents: 853 diff changeset	527 **/
ff530685e46a fast version of image copy Sebastien Jodogne <s.jodogne@gmail.com> parents: 853 diff changeset	528
ff530685e46a fast version of image copy Sebastien Jodogne <s.jodogne@gmail.com> parents: 853 diff changeset	529 bool fastVersionSuccess = false;
ff530685e46a fast version of image copy Sebastien Jodogne <s.jodogne@gmail.com> parents: 853 diff changeset	530 PixelFormat sourceFormat;
863 3c0d0836f704 refactoring Sebastien Jodogne <s.jodogne@gmail.com> parents: 861 diff changeset	531 if (!info.IsPlanar() &&
1905 8b1baa2315b8 Huge speedup if decoding the family of JPEG transfer syntaxes Sebastien Jodogne <s.jodogne@gmail.com> parents: 1904 diff changeset	532 info.ExtractPixelFormat(sourceFormat, false))
854 ff530685e46a fast version of image copy Sebastien Jodogne <s.jodogne@gmail.com> parents: 853 diff changeset	533 {
ff530685e46a fast version of image copy Sebastien Jodogne <s.jodogne@gmail.com> parents: 853 diff changeset	534 try
ff530685e46a fast version of image copy Sebastien Jodogne <s.jodogne@gmail.com> parents: 853 diff changeset	535 {
1190 851a55d183c9 fix issue 22 Sebastien Jodogne <s.jodogne@gmail.com> parents: 1015 diff changeset	536 size_t frameSize = info.GetHeight() * info.GetWidth() * GetBytesPerPixel(sourceFormat);
851a55d183c9 fix issue 22 Sebastien Jodogne <s.jodogne@gmail.com> parents: 1015 diff changeset	537 if ((frame + 1) * frameSize <= source.GetSize())
851a55d183c9 fix issue 22 Sebastien Jodogne <s.jodogne@gmail.com> parents: 1015 diff changeset	538 {
851a55d183c9 fix issue 22 Sebastien Jodogne <s.jodogne@gmail.com> parents: 1015 diff changeset	539 const uint8_t* buffer = reinterpret_cast<const uint8_t*>(source.GetAccessor().GetPixelData());
854 ff530685e46a fast version of image copy Sebastien Jodogne <s.jodogne@gmail.com> parents: 853 diff changeset	540
1190 851a55d183c9 fix issue 22 Sebastien Jodogne <s.jodogne@gmail.com> parents: 1015 diff changeset	541 ImageAccessor sourceImage;
851a55d183c9 fix issue 22 Sebastien Jodogne <s.jodogne@gmail.com> parents: 1015 diff changeset	542 sourceImage.AssignReadOnly(sourceFormat,
851a55d183c9 fix issue 22 Sebastien Jodogne <s.jodogne@gmail.com> parents: 1015 diff changeset	543 info.GetWidth(),
851a55d183c9 fix issue 22 Sebastien Jodogne <s.jodogne@gmail.com> parents: 1015 diff changeset	544 info.GetHeight(),
851a55d183c9 fix issue 22 Sebastien Jodogne <s.jodogne@gmail.com> parents: 1015 diff changeset	545 info.GetWidth() * GetBytesPerPixel(sourceFormat),
851a55d183c9 fix issue 22 Sebastien Jodogne <s.jodogne@gmail.com> parents: 1015 diff changeset	546 buffer + frame * frameSize);
851a55d183c9 fix issue 22 Sebastien Jodogne <s.jodogne@gmail.com> parents: 1015 diff changeset	547
1826 ac5b0b4e2434 refactoring of DicomImageDecoder Sebastien Jodogne <s.jodogne@gmail.com> parents: 1824 diff changeset	548 ImageProcessing::Convert(*target, sourceImage);
ac5b0b4e2434 refactoring of DicomImageDecoder Sebastien Jodogne <s.jodogne@gmail.com> parents: 1824 diff changeset	549 ImageProcessing::ShiftRight(*target, info.GetShift());
1190 851a55d183c9 fix issue 22 Sebastien Jodogne <s.jodogne@gmail.com> parents: 1015 diff changeset	550 fastVersionSuccess = true;
851a55d183c9 fix issue 22 Sebastien Jodogne <s.jodogne@gmail.com> parents: 1015 diff changeset	551 }
854 ff530685e46a fast version of image copy Sebastien Jodogne <s.jodogne@gmail.com> parents: 853 diff changeset	552 }
ff530685e46a fast version of image copy Sebastien Jodogne <s.jodogne@gmail.com> parents: 853 diff changeset	553 catch (OrthancException&)
ff530685e46a fast version of image copy Sebastien Jodogne <s.jodogne@gmail.com> parents: 853 diff changeset	554 {
859 610a9a1ed855 ImageProcessing::Convert Sebastien Jodogne <s.jodogne@gmail.com> parents: 858 diff changeset	555 // Unsupported conversion, use the slow version
854 ff530685e46a fast version of image copy Sebastien Jodogne <s.jodogne@gmail.com> parents: 853 diff changeset	556 }
ff530685e46a fast version of image copy Sebastien Jodogne <s.jodogne@gmail.com> parents: 853 diff changeset	557 }
ff530685e46a fast version of image copy Sebastien Jodogne <s.jodogne@gmail.com> parents: 853 diff changeset	558
ff530685e46a fast version of image copy Sebastien Jodogne <s.jodogne@gmail.com> parents: 853 diff changeset	559 /**
859 610a9a1ed855 ImageProcessing::Convert Sebastien Jodogne <s.jodogne@gmail.com> parents: 858 diff changeset	560 * Slow version : loop over the DICOM buffer, storing its value
610a9a1ed855 ImageProcessing::Convert Sebastien Jodogne <s.jodogne@gmail.com> parents: 858 diff changeset	561 * into the target image.
847 03ea55da7429 fully functional JPEG-LS conversion Sebastien Jodogne <s.jodogne@gmail.com> parents: 846 diff changeset	562 **/
03ea55da7429 fully functional JPEG-LS conversion Sebastien Jodogne <s.jodogne@gmail.com> parents: 846 diff changeset	563
854 ff530685e46a fast version of image copy Sebastien Jodogne <s.jodogne@gmail.com> parents: 853 diff changeset	564 if (!fastVersionSuccess)
847 03ea55da7429 fully functional JPEG-LS conversion Sebastien Jodogne <s.jodogne@gmail.com> parents: 846 diff changeset	565 {
1826 ac5b0b4e2434 refactoring of DicomImageDecoder Sebastien Jodogne <s.jodogne@gmail.com> parents: 1824 diff changeset	566 switch (target->GetFormat())
854 ff530685e46a fast version of image copy Sebastien Jodogne <s.jodogne@gmail.com> parents: 853 diff changeset	567 {
ff530685e46a fast version of image copy Sebastien Jodogne <s.jodogne@gmail.com> parents: 853 diff changeset	568 case PixelFormat_RGB24:
ff530685e46a fast version of image copy Sebastien Jodogne <s.jodogne@gmail.com> parents: 853 diff changeset	569 case PixelFormat_RGBA32:
ff530685e46a fast version of image copy Sebastien Jodogne <s.jodogne@gmail.com> parents: 853 diff changeset	570 case PixelFormat_Grayscale8:
1826 ac5b0b4e2434 refactoring of DicomImageDecoder Sebastien Jodogne <s.jodogne@gmail.com> parents: 1824 diff changeset	571 CopyPixels<uint8_t>(*target, source.GetAccessor());
863 3c0d0836f704 refactoring Sebastien Jodogne <s.jodogne@gmail.com> parents: 861 diff changeset	572 break;
860 80c7e53a69b5 bugfix Sebastien Jodogne <s.jodogne@gmail.com> parents: 859 diff changeset	573
854 ff530685e46a fast version of image copy Sebastien Jodogne <s.jodogne@gmail.com> parents: 853 diff changeset	574 case PixelFormat_Grayscale16:
1826 ac5b0b4e2434 refactoring of DicomImageDecoder Sebastien Jodogne <s.jodogne@gmail.com> parents: 1824 diff changeset	575 CopyPixels<uint16_t>(*target, source.GetAccessor());
863 3c0d0836f704 refactoring Sebastien Jodogne <s.jodogne@gmail.com> parents: 861 diff changeset	576 break;
847 03ea55da7429 fully functional JPEG-LS conversion Sebastien Jodogne <s.jodogne@gmail.com> parents: 846 diff changeset	577
854 ff530685e46a fast version of image copy Sebastien Jodogne <s.jodogne@gmail.com> parents: 853 diff changeset	578 case PixelFormat_SignedGrayscale16:
1826 ac5b0b4e2434 refactoring of DicomImageDecoder Sebastien Jodogne <s.jodogne@gmail.com> parents: 1824 diff changeset	579 CopyPixels<int16_t>(*target, source.GetAccessor());
863 3c0d0836f704 refactoring Sebastien Jodogne <s.jodogne@gmail.com> parents: 861 diff changeset	580 break;
847 03ea55da7429 fully functional JPEG-LS conversion Sebastien Jodogne <s.jodogne@gmail.com> parents: 846 diff changeset	581
854 ff530685e46a fast version of image copy Sebastien Jodogne <s.jodogne@gmail.com> parents: 853 diff changeset	582 default:
863 3c0d0836f704 refactoring Sebastien Jodogne <s.jodogne@gmail.com> parents: 861 diff changeset	583 throw OrthancException(ErrorCode_InternalError);
854 ff530685e46a fast version of image copy Sebastien Jodogne <s.jodogne@gmail.com> parents: 853 diff changeset	584 }
847 03ea55da7429 fully functional JPEG-LS conversion Sebastien Jodogne <s.jodogne@gmail.com> parents: 846 diff changeset	585 }
1826 ac5b0b4e2434 refactoring of DicomImageDecoder Sebastien Jodogne <s.jodogne@gmail.com> parents: 1824 diff changeset	586
ac5b0b4e2434 refactoring of DicomImageDecoder Sebastien Jodogne <s.jodogne@gmail.com> parents: 1824 diff changeset	587 return target.release();
847 03ea55da7429 fully functional JPEG-LS conversion Sebastien Jodogne <s.jodogne@gmail.com> parents: 846 diff changeset	588 }
03ea55da7429 fully functional JPEG-LS conversion Sebastien Jodogne <s.jodogne@gmail.com> parents: 846 diff changeset	589
03ea55da7429 fully functional JPEG-LS conversion Sebastien Jodogne <s.jodogne@gmail.com> parents: 846 diff changeset	590
2423 5a7c5c541a1d Built-in decoding of palette images Sebastien Jodogne <s.jodogne@gmail.com> parents: 2415 diff changeset	591 ImageAccessor* DicomImageDecoder::ApplyCodec
5a7c5c541a1d Built-in decoding of palette images Sebastien Jodogne <s.jodogne@gmail.com> parents: 2415 diff changeset	592 (const DcmCodec& codec,
5a7c5c541a1d Built-in decoding of palette images Sebastien Jodogne <s.jodogne@gmail.com> parents: 2415 diff changeset	593 const DcmCodecParameter& parameters,
5a7c5c541a1d Built-in decoding of palette images Sebastien Jodogne <s.jodogne@gmail.com> parents: 2415 diff changeset	594 const DcmRepresentationParameter& representationParameter,
5a7c5c541a1d Built-in decoding of palette images Sebastien Jodogne <s.jodogne@gmail.com> parents: 2415 diff changeset	595 DcmDataset& dataset,
5a7c5c541a1d Built-in decoding of palette images Sebastien Jodogne <s.jodogne@gmail.com> parents: 2415 diff changeset	596 unsigned int frame)
1903 554ec8422ec5 refactoring Sebastien Jodogne <s.jodogne@gmail.com> parents: 1902 diff changeset	597 {
1924 6c73df12ca51 New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding) Sebastien Jodogne <s.jodogne@gmail.com> parents: 1905 diff changeset	598 DcmPixelSequence* pixelSequence = FromDcmtkBridge::GetPixelSequence(dataset);
6c73df12ca51 New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding) Sebastien Jodogne <s.jodogne@gmail.com> parents: 1905 diff changeset	599 if (pixelSequence == NULL)
6c73df12ca51 New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding) Sebastien Jodogne <s.jodogne@gmail.com> parents: 1905 diff changeset	600 {
6c73df12ca51 New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding) Sebastien Jodogne <s.jodogne@gmail.com> parents: 1905 diff changeset	601 throw OrthancException(ErrorCode_BadFileFormat);
6c73df12ca51 New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding) Sebastien Jodogne <s.jodogne@gmail.com> parents: 1905 diff changeset	602 }
6c73df12ca51 New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding) Sebastien Jodogne <s.jodogne@gmail.com> parents: 1905 diff changeset	603
2423 5a7c5c541a1d Built-in decoding of palette images Sebastien Jodogne <s.jodogne@gmail.com> parents: 2415 diff changeset	604 DicomMap m;
4136 2724977419fb Fix DICOM SCP filters if some query tag has more than 256 characters Sebastien Jodogne <s.jodogne@gmail.com> parents: 4119 diff changeset	605 FromDcmtkBridge::ExtractDicomSummary(m, dataset, 0 /* don't truncate tags */);
2423 5a7c5c541a1d Built-in decoding of palette images Sebastien Jodogne <s.jodogne@gmail.com> parents: 2415 diff changeset	606 DicomImageInformation info(m);
5a7c5c541a1d Built-in decoding of palette images Sebastien Jodogne <s.jodogne@gmail.com> parents: 2415 diff changeset	607
3712 2a170a8f1faf replacing std::auto_ptr by std::unique_ptr Sebastien Jodogne <s.jodogne@gmail.com> parents: 3640 diff changeset	608 std::unique_ptr<ImageAccessor> target(CreateImage(dataset, true));
845 48016722c770 refactoring Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	609
48016722c770 refactoring Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	610 Uint32 startFragment = 0; // Default
48016722c770 refactoring Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	611 OFString decompressedColorModel; // Out
2423 5a7c5c541a1d Built-in decoding of palette images Sebastien Jodogne <s.jodogne@gmail.com> parents: 2415 diff changeset	612
5a7c5c541a1d Built-in decoding of palette images Sebastien Jodogne <s.jodogne@gmail.com> parents: 2415 diff changeset	613 OFCondition c;
5a7c5c541a1d Built-in decoding of palette images Sebastien Jodogne <s.jodogne@gmail.com> parents: 2415 diff changeset	614
5a7c5c541a1d Built-in decoding of palette images Sebastien Jodogne <s.jodogne@gmail.com> parents: 2415 diff changeset	615 if (info.GetPhotometricInterpretation() == PhotometricInterpretation_Palette &&
5a7c5c541a1d Built-in decoding of palette images Sebastien Jodogne <s.jodogne@gmail.com> parents: 2415 diff changeset	616 info.GetChannelCount() == 1)
5a7c5c541a1d Built-in decoding of palette images Sebastien Jodogne <s.jodogne@gmail.com> parents: 2415 diff changeset	617 {
5a7c5c541a1d Built-in decoding of palette images Sebastien Jodogne <s.jodogne@gmail.com> parents: 2415 diff changeset	618 std::string uncompressed;
5a7c5c541a1d Built-in decoding of palette images Sebastien Jodogne <s.jodogne@gmail.com> parents: 2415 diff changeset	619 uncompressed.resize(info.GetWidth() * info.GetHeight() * info.GetBytesPerValue());
845 48016722c770 refactoring Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	620
2423 5a7c5c541a1d Built-in decoding of palette images Sebastien Jodogne <s.jodogne@gmail.com> parents: 2415 diff changeset	621 if (uncompressed.size() == 0 \|\|
5a7c5c541a1d Built-in decoding of palette images Sebastien Jodogne <s.jodogne@gmail.com> parents: 2415 diff changeset	622 !codec.decodeFrame(&representationParameter,
5a7c5c541a1d Built-in decoding of palette images Sebastien Jodogne <s.jodogne@gmail.com> parents: 2415 diff changeset	623 pixelSequence, &parameters,
5a7c5c541a1d Built-in decoding of palette images Sebastien Jodogne <s.jodogne@gmail.com> parents: 2415 diff changeset	624 &dataset, frame, startFragment, &uncompressed[0],
5a7c5c541a1d Built-in decoding of palette images Sebastien Jodogne <s.jodogne@gmail.com> parents: 2415 diff changeset	625 uncompressed.size(), decompressedColorModel).good())
5a7c5c541a1d Built-in decoding of palette images Sebastien Jodogne <s.jodogne@gmail.com> parents: 2415 diff changeset	626 {
2954 d924f9bb61cc taking advantage of details in OrthancException Sebastien Jodogne <s.jodogne@gmail.com> parents: 2699 diff changeset	627 throw OrthancException(ErrorCode_BadFileFormat,
d924f9bb61cc taking advantage of details in OrthancException Sebastien Jodogne <s.jodogne@gmail.com> parents: 2699 diff changeset	628 "Cannot decode a palette image");
2423 5a7c5c541a1d Built-in decoding of palette images Sebastien Jodogne <s.jodogne@gmail.com> parents: 2415 diff changeset	629 }
5a7c5c541a1d Built-in decoding of palette images Sebastien Jodogne <s.jodogne@gmail.com> parents: 2415 diff changeset	630
5a7c5c541a1d Built-in decoding of palette images Sebastien Jodogne <s.jodogne@gmail.com> parents: 2415 diff changeset	631 return DecodeLookupTable(target, info, dataset,
5a7c5c541a1d Built-in decoding of palette images Sebastien Jodogne <s.jodogne@gmail.com> parents: 2415 diff changeset	632 reinterpret_cast<const uint8_t*>(uncompressed.c_str()),
5a7c5c541a1d Built-in decoding of palette images Sebastien Jodogne <s.jodogne@gmail.com> parents: 2415 diff changeset	633 uncompressed.size());
845 48016722c770 refactoring Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	634 }
1903 554ec8422ec5 refactoring Sebastien Jodogne <s.jodogne@gmail.com> parents: 1902 diff changeset	635 else
554ec8422ec5 refactoring Sebastien Jodogne <s.jodogne@gmail.com> parents: 1902 diff changeset	636 {
2423 5a7c5c541a1d Built-in decoding of palette images Sebastien Jodogne <s.jodogne@gmail.com> parents: 2415 diff changeset	637 if (!codec.decodeFrame(&representationParameter,
5a7c5c541a1d Built-in decoding of palette images Sebastien Jodogne <s.jodogne@gmail.com> parents: 2415 diff changeset	638 pixelSequence, &parameters,
5a7c5c541a1d Built-in decoding of palette images Sebastien Jodogne <s.jodogne@gmail.com> parents: 2415 diff changeset	639 &dataset, frame, startFragment, target->GetBuffer(),
5a7c5c541a1d Built-in decoding of palette images Sebastien Jodogne <s.jodogne@gmail.com> parents: 2415 diff changeset	640 target->GetSize(), decompressedColorModel).good())
5a7c5c541a1d Built-in decoding of palette images Sebastien Jodogne <s.jodogne@gmail.com> parents: 2415 diff changeset	641 {
2954 d924f9bb61cc taking advantage of details in OrthancException Sebastien Jodogne <s.jodogne@gmail.com> parents: 2699 diff changeset	642 throw OrthancException(ErrorCode_BadFileFormat,
d924f9bb61cc taking advantage of details in OrthancException Sebastien Jodogne <s.jodogne@gmail.com> parents: 2699 diff changeset	643 "Cannot decode a non-palette image");
2423 5a7c5c541a1d Built-in decoding of palette images Sebastien Jodogne <s.jodogne@gmail.com> parents: 2415 diff changeset	644 }
5a7c5c541a1d Built-in decoding of palette images Sebastien Jodogne <s.jodogne@gmail.com> parents: 2415 diff changeset	645
5a7c5c541a1d Built-in decoding of palette images Sebastien Jodogne <s.jodogne@gmail.com> parents: 2415 diff changeset	646 return target.release();
1903 554ec8422ec5 refactoring Sebastien Jodogne <s.jodogne@gmail.com> parents: 1902 diff changeset	647 }
845 48016722c770 refactoring Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	648 }
847 03ea55da7429 fully functional JPEG-LS conversion Sebastien Jodogne <s.jodogne@gmail.com> parents: 846 diff changeset	649
859 610a9a1ed855 ImageProcessing::Convert Sebastien Jodogne <s.jodogne@gmail.com> parents: 858 diff changeset	650
1826 ac5b0b4e2434 refactoring of DicomImageDecoder Sebastien Jodogne <s.jodogne@gmail.com> parents: 1824 diff changeset	651 ImageAccessor* DicomImageDecoder::Decode(ParsedDicomFile& dicom,
ac5b0b4e2434 refactoring of DicomImageDecoder Sebastien Jodogne <s.jodogne@gmail.com> parents: 1824 diff changeset	652 unsigned int frame)
847 03ea55da7429 fully functional JPEG-LS conversion Sebastien Jodogne <s.jodogne@gmail.com> parents: 846 diff changeset	653 {
3744 accf1b60b108 accessing raw pixel data Sebastien Jodogne <s.jodogne@gmail.com> parents: 3712 diff changeset	654 if (dicom.GetDcmtkObject().getDataset() == NULL)
accf1b60b108 accessing raw pixel data Sebastien Jodogne <s.jodogne@gmail.com> parents: 3712 diff changeset	655 {
accf1b60b108 accessing raw pixel data Sebastien Jodogne <s.jodogne@gmail.com> parents: 3712 diff changeset	656 throw OrthancException(ErrorCode_InternalError);
accf1b60b108 accessing raw pixel data Sebastien Jodogne <s.jodogne@gmail.com> parents: 3712 diff changeset	657 }
accf1b60b108 accessing raw pixel data Sebastien Jodogne <s.jodogne@gmail.com> parents: 3712 diff changeset	658 else
accf1b60b108 accessing raw pixel data Sebastien Jodogne <s.jodogne@gmail.com> parents: 3712 diff changeset	659 {
accf1b60b108 accessing raw pixel data Sebastien Jodogne <s.jodogne@gmail.com> parents: 3712 diff changeset	660 return Decode(*dicom.GetDcmtkObject().getDataset(), frame);
accf1b60b108 accessing raw pixel data Sebastien Jodogne <s.jodogne@gmail.com> parents: 3712 diff changeset	661 }
accf1b60b108 accessing raw pixel data Sebastien Jodogne <s.jodogne@gmail.com> parents: 3712 diff changeset	662 }
accf1b60b108 accessing raw pixel data Sebastien Jodogne <s.jodogne@gmail.com> parents: 3712 diff changeset	663
accf1b60b108 accessing raw pixel data Sebastien Jodogne <s.jodogne@gmail.com> parents: 3712 diff changeset	664
accf1b60b108 accessing raw pixel data Sebastien Jodogne <s.jodogne@gmail.com> parents: 3712 diff changeset	665 ImageAccessor* DicomImageDecoder::Decode(DcmDataset& dataset,
accf1b60b108 accessing raw pixel data Sebastien Jodogne <s.jodogne@gmail.com> parents: 3712 diff changeset	666 unsigned int frame)
accf1b60b108 accessing raw pixel data Sebastien Jodogne <s.jodogne@gmail.com> parents: 3712 diff changeset	667 {
3883 795c9ca5eb91 DANGEROUS changeset: replaced "getOriginalXfer()" by "getCurrentXfer()" throughout Orthanc Sebastien Jodogne <s.jodogne@gmail.com> parents: 3744 diff changeset	668 E_TransferSyntax syntax = dataset.getCurrentXfer();
1824 b530c3dfe2a6 refactoring image decoding Sebastien Jodogne <s.jodogne@gmail.com> parents: 1612 diff changeset	669
1903 554ec8422ec5 refactoring Sebastien Jodogne <s.jodogne@gmail.com> parents: 1902 diff changeset	670 /**
554ec8422ec5 refactoring Sebastien Jodogne <s.jodogne@gmail.com> parents: 1902 diff changeset	671 * Deal with uncompressed, raw images.
554ec8422ec5 refactoring Sebastien Jodogne <s.jodogne@gmail.com> parents: 1902 diff changeset	672 * http://support.dcmtk.org/docs/dcxfer_8h-source.html
554ec8422ec5 refactoring Sebastien Jodogne <s.jodogne@gmail.com> parents: 1902 diff changeset	673 **/
1904 4be8accf8768 clarifications Sebastien Jodogne <s.jodogne@gmail.com> parents: 1903 diff changeset	674 if (syntax == EXS_Unknown \|\|
4be8accf8768 clarifications Sebastien Jodogne <s.jodogne@gmail.com> parents: 1903 diff changeset	675 syntax == EXS_LittleEndianImplicit \|\|
4be8accf8768 clarifications Sebastien Jodogne <s.jodogne@gmail.com> parents: 1903 diff changeset	676 syntax == EXS_BigEndianImplicit \|\|
4be8accf8768 clarifications Sebastien Jodogne <s.jodogne@gmail.com> parents: 1903 diff changeset	677 syntax == EXS_LittleEndianExplicit \|\|
4be8accf8768 clarifications Sebastien Jodogne <s.jodogne@gmail.com> parents: 1903 diff changeset	678 syntax == EXS_BigEndianExplicit)
847 03ea55da7429 fully functional JPEG-LS conversion Sebastien Jodogne <s.jodogne@gmail.com> parents: 846 diff changeset	679 {
1826 ac5b0b4e2434 refactoring of DicomImageDecoder Sebastien Jodogne <s.jodogne@gmail.com> parents: 1824 diff changeset	680 return DecodeUncompressedImage(dataset, frame);
847 03ea55da7429 fully functional JPEG-LS conversion Sebastien Jodogne <s.jodogne@gmail.com> parents: 846 diff changeset	681 }
03ea55da7429 fully functional JPEG-LS conversion Sebastien Jodogne <s.jodogne@gmail.com> parents: 846 diff changeset	682
1904 4be8accf8768 clarifications Sebastien Jodogne <s.jodogne@gmail.com> parents: 1903 diff changeset	683
2380 96b3ec054b69 reorganization in macros Sebastien Jodogne <s.jodogne@gmail.com> parents: 2281 diff changeset	684 #if ORTHANC_ENABLE_DCMTK_JPEG_LOSSLESS == 1
1904 4be8accf8768 clarifications Sebastien Jodogne <s.jodogne@gmail.com> parents: 1903 diff changeset	685 /**
4be8accf8768 clarifications Sebastien Jodogne <s.jodogne@gmail.com> parents: 1903 diff changeset	686 * Deal with JPEG-LS images.
4be8accf8768 clarifications Sebastien Jodogne <s.jodogne@gmail.com> parents: 1903 diff changeset	687 **/
4be8accf8768 clarifications Sebastien Jodogne <s.jodogne@gmail.com> parents: 1903 diff changeset	688
4be8accf8768 clarifications Sebastien Jodogne <s.jodogne@gmail.com> parents: 1903 diff changeset	689 if (syntax == EXS_JPEGLSLossless \|\|
4be8accf8768 clarifications Sebastien Jodogne <s.jodogne@gmail.com> parents: 1903 diff changeset	690 syntax == EXS_JPEGLSLossy)
847 03ea55da7429 fully functional JPEG-LS conversion Sebastien Jodogne <s.jodogne@gmail.com> parents: 846 diff changeset	691 {
2430 a6fab385b89e fix for dcmtk 3.6.0 Sebastien Jodogne <s.jodogne@gmail.com> parents: 2423 diff changeset	692 // The (2, OFTrue) are the default parameters as found in DCMTK 3.6.2
a6fab385b89e fix for dcmtk 3.6.0 Sebastien Jodogne <s.jodogne@gmail.com> parents: 2423 diff changeset	693 // http://support.dcmtk.org/docs/classDJLSRepresentationParameter.html
a6fab385b89e fix for dcmtk 3.6.0 Sebastien Jodogne <s.jodogne@gmail.com> parents: 2423 diff changeset	694 DJLSRepresentationParameter representationParameter(2, OFTrue);
a6fab385b89e fix for dcmtk 3.6.0 Sebastien Jodogne <s.jodogne@gmail.com> parents: 2423 diff changeset	695
1904 4be8accf8768 clarifications Sebastien Jodogne <s.jodogne@gmail.com> parents: 1903 diff changeset	696 DJLSCodecParameter parameters;
3712 2a170a8f1faf replacing std::auto_ptr by std::unique_ptr Sebastien Jodogne <s.jodogne@gmail.com> parents: 3640 diff changeset	697 std::unique_ptr<DJLSDecoderBase> decoder;
1903 554ec8422ec5 refactoring Sebastien Jodogne <s.jodogne@gmail.com> parents: 1902 diff changeset	698
1904 4be8accf8768 clarifications Sebastien Jodogne <s.jodogne@gmail.com> parents: 1903 diff changeset	699 switch (syntax)
4be8accf8768 clarifications Sebastien Jodogne <s.jodogne@gmail.com> parents: 1903 diff changeset	700 {
4be8accf8768 clarifications Sebastien Jodogne <s.jodogne@gmail.com> parents: 1903 diff changeset	701 case EXS_JPEGLSLossless:
1905 8b1baa2315b8 Huge speedup if decoding the family of JPEG transfer syntaxes Sebastien Jodogne <s.jodogne@gmail.com> parents: 1904 diff changeset	702 LOG(INFO) << "Decoding a JPEG-LS lossless DICOM image";
1904 4be8accf8768 clarifications Sebastien Jodogne <s.jodogne@gmail.com> parents: 1903 diff changeset	703 decoder.reset(new DJLSLosslessDecoder);
4be8accf8768 clarifications Sebastien Jodogne <s.jodogne@gmail.com> parents: 1903 diff changeset	704 break;
4be8accf8768 clarifications Sebastien Jodogne <s.jodogne@gmail.com> parents: 1903 diff changeset	705
4be8accf8768 clarifications Sebastien Jodogne <s.jodogne@gmail.com> parents: 1903 diff changeset	706 case EXS_JPEGLSLossy:
1905 8b1baa2315b8 Huge speedup if decoding the family of JPEG transfer syntaxes Sebastien Jodogne <s.jodogne@gmail.com> parents: 1904 diff changeset	707 LOG(INFO) << "Decoding a JPEG-LS near-lossless DICOM image";
1904 4be8accf8768 clarifications Sebastien Jodogne <s.jodogne@gmail.com> parents: 1903 diff changeset	708 decoder.reset(new DJLSNearLosslessDecoder);
4be8accf8768 clarifications Sebastien Jodogne <s.jodogne@gmail.com> parents: 1903 diff changeset	709 break;
1903 554ec8422ec5 refactoring Sebastien Jodogne <s.jodogne@gmail.com> parents: 1902 diff changeset	710
1904 4be8accf8768 clarifications Sebastien Jodogne <s.jodogne@gmail.com> parents: 1903 diff changeset	711 default:
4be8accf8768 clarifications Sebastien Jodogne <s.jodogne@gmail.com> parents: 1903 diff changeset	712 throw OrthancException(ErrorCode_InternalError);
4be8accf8768 clarifications Sebastien Jodogne <s.jodogne@gmail.com> parents: 1903 diff changeset	713 }
4be8accf8768 clarifications Sebastien Jodogne <s.jodogne@gmail.com> parents: 1903 diff changeset	714
2423 5a7c5c541a1d Built-in decoding of palette images Sebastien Jodogne <s.jodogne@gmail.com> parents: 2415 diff changeset	715 return ApplyCodec(*decoder, parameters, representationParameter, dataset, frame);
847 03ea55da7429 fully functional JPEG-LS conversion Sebastien Jodogne <s.jodogne@gmail.com> parents: 846 diff changeset	716 }
03ea55da7429 fully functional JPEG-LS conversion Sebastien Jodogne <s.jodogne@gmail.com> parents: 846 diff changeset	717 #endif
03ea55da7429 fully functional JPEG-LS conversion Sebastien Jodogne <s.jodogne@gmail.com> parents: 846 diff changeset	718
852 5944b8b80842 refactoring Sebastien Jodogne <s.jodogne@gmail.com> parents: 851 diff changeset	719
2380 96b3ec054b69 reorganization in macros Sebastien Jodogne <s.jodogne@gmail.com> parents: 2281 diff changeset	720 #if ORTHANC_ENABLE_DCMTK_JPEG == 1
1905 8b1baa2315b8 Huge speedup if decoding the family of JPEG transfer syntaxes Sebastien Jodogne <s.jodogne@gmail.com> parents: 1904 diff changeset	721 /**
8b1baa2315b8 Huge speedup if decoding the family of JPEG transfer syntaxes Sebastien Jodogne <s.jodogne@gmail.com> parents: 1904 diff changeset	722 * Deal with JPEG images.
8b1baa2315b8 Huge speedup if decoding the family of JPEG transfer syntaxes Sebastien Jodogne <s.jodogne@gmail.com> parents: 1904 diff changeset	723 **/
8b1baa2315b8 Huge speedup if decoding the family of JPEG transfer syntaxes Sebastien Jodogne <s.jodogne@gmail.com> parents: 1904 diff changeset	724
1944 1a5e070a21c3 fix compilation against DCMTK 3.6.1 Sebastien Jodogne <s.jodogne@gmail.com> parents: 1929 diff changeset	725 if (syntax == EXS_JPEGProcess1 \|\| // DJDecoderBaseline
1a5e070a21c3 fix compilation against DCMTK 3.6.1 Sebastien Jodogne <s.jodogne@gmail.com> parents: 1929 diff changeset	726 syntax == EXS_JPEGProcess2_4 \|\| // DJDecoderExtended
1a5e070a21c3 fix compilation against DCMTK 3.6.1 Sebastien Jodogne <s.jodogne@gmail.com> parents: 1929 diff changeset	727 syntax == EXS_JPEGProcess6_8 \|\| // DJDecoderSpectralSelection (retired)
1a5e070a21c3 fix compilation against DCMTK 3.6.1 Sebastien Jodogne <s.jodogne@gmail.com> parents: 1929 diff changeset	728 syntax == EXS_JPEGProcess10_12 \|\| // DJDecoderProgressive (retired)
1a5e070a21c3 fix compilation against DCMTK 3.6.1 Sebastien Jodogne <s.jodogne@gmail.com> parents: 1929 diff changeset	729 syntax == EXS_JPEGProcess14 \|\| // DJDecoderLossless
1a5e070a21c3 fix compilation against DCMTK 3.6.1 Sebastien Jodogne <s.jodogne@gmail.com> parents: 1929 diff changeset	730 syntax == EXS_JPEGProcess14SV1) // DJDecoderP14SV1
1905 8b1baa2315b8 Huge speedup if decoding the family of JPEG transfer syntaxes Sebastien Jodogne <s.jodogne@gmail.com> parents: 1904 diff changeset	731 {
8b1baa2315b8 Huge speedup if decoding the family of JPEG transfer syntaxes Sebastien Jodogne <s.jodogne@gmail.com> parents: 1904 diff changeset	732 // http://support.dcmtk.org/docs-snapshot/djutils_8h.html#a2a9695e5b6b0f5c45a64c7f072c1eb9d
8b1baa2315b8 Huge speedup if decoding the family of JPEG transfer syntaxes Sebastien Jodogne <s.jodogne@gmail.com> parents: 1904 diff changeset	733 DJCodecParameter parameters(
8b1baa2315b8 Huge speedup if decoding the family of JPEG transfer syntaxes Sebastien Jodogne <s.jodogne@gmail.com> parents: 1904 diff changeset	734 ECC_lossyYCbCr, // Mode for color conversion for compression, Unused for decompression
8b1baa2315b8 Huge speedup if decoding the family of JPEG transfer syntaxes Sebastien Jodogne <s.jodogne@gmail.com> parents: 1904 diff changeset	735 EDC_photometricInterpretation, // Perform color space conversion from YCbCr to RGB if DICOM photometric interpretation indicates YCbCr
8b1baa2315b8 Huge speedup if decoding the family of JPEG transfer syntaxes Sebastien Jodogne <s.jodogne@gmail.com> parents: 1904 diff changeset	736 EUC_default, // Mode for UID creation, unused for decompression
8b1baa2315b8 Huge speedup if decoding the family of JPEG transfer syntaxes Sebastien Jodogne <s.jodogne@gmail.com> parents: 1904 diff changeset	737 EPC_default); // Automatically determine whether color-by-plane is required from the SOP Class UID and decompressed photometric interpretation
2423 5a7c5c541a1d Built-in decoding of palette images Sebastien Jodogne <s.jodogne@gmail.com> parents: 2415 diff changeset	738 DJ_RPLossy representationParameter;
3712 2a170a8f1faf replacing std::auto_ptr by std::unique_ptr Sebastien Jodogne <s.jodogne@gmail.com> parents: 3640 diff changeset	739 std::unique_ptr<DJCodecDecoder> decoder;
1905 8b1baa2315b8 Huge speedup if decoding the family of JPEG transfer syntaxes Sebastien Jodogne <s.jodogne@gmail.com> parents: 1904 diff changeset	740
8b1baa2315b8 Huge speedup if decoding the family of JPEG transfer syntaxes Sebastien Jodogne <s.jodogne@gmail.com> parents: 1904 diff changeset	741 switch (syntax)
8b1baa2315b8 Huge speedup if decoding the family of JPEG transfer syntaxes Sebastien Jodogne <s.jodogne@gmail.com> parents: 1904 diff changeset	742 {
1944 1a5e070a21c3 fix compilation against DCMTK 3.6.1 Sebastien Jodogne <s.jodogne@gmail.com> parents: 1929 diff changeset	743 case EXS_JPEGProcess1:
1905 8b1baa2315b8 Huge speedup if decoding the family of JPEG transfer syntaxes Sebastien Jodogne <s.jodogne@gmail.com> parents: 1904 diff changeset	744 LOG(INFO) << "Decoding a JPEG baseline (process 1) DICOM image";
8b1baa2315b8 Huge speedup if decoding the family of JPEG transfer syntaxes Sebastien Jodogne <s.jodogne@gmail.com> parents: 1904 diff changeset	745 decoder.reset(new DJDecoderBaseline);
8b1baa2315b8 Huge speedup if decoding the family of JPEG transfer syntaxes Sebastien Jodogne <s.jodogne@gmail.com> parents: 1904 diff changeset	746 break;
8b1baa2315b8 Huge speedup if decoding the family of JPEG transfer syntaxes Sebastien Jodogne <s.jodogne@gmail.com> parents: 1904 diff changeset	747
1944 1a5e070a21c3 fix compilation against DCMTK 3.6.1 Sebastien Jodogne <s.jodogne@gmail.com> parents: 1929 diff changeset	748 case EXS_JPEGProcess2_4 :
1905 8b1baa2315b8 Huge speedup if decoding the family of JPEG transfer syntaxes Sebastien Jodogne <s.jodogne@gmail.com> parents: 1904 diff changeset	749 LOG(INFO) << "Decoding a JPEG baseline (processes 2 and 4) DICOM image";
8b1baa2315b8 Huge speedup if decoding the family of JPEG transfer syntaxes Sebastien Jodogne <s.jodogne@gmail.com> parents: 1904 diff changeset	750 decoder.reset(new DJDecoderExtended);
8b1baa2315b8 Huge speedup if decoding the family of JPEG transfer syntaxes Sebastien Jodogne <s.jodogne@gmail.com> parents: 1904 diff changeset	751 break;
8b1baa2315b8 Huge speedup if decoding the family of JPEG transfer syntaxes Sebastien Jodogne <s.jodogne@gmail.com> parents: 1904 diff changeset	752
1944 1a5e070a21c3 fix compilation against DCMTK 3.6.1 Sebastien Jodogne <s.jodogne@gmail.com> parents: 1929 diff changeset	753 case EXS_JPEGProcess6_8: // Retired
1905 8b1baa2315b8 Huge speedup if decoding the family of JPEG transfer syntaxes Sebastien Jodogne <s.jodogne@gmail.com> parents: 1904 diff changeset	754 LOG(INFO) << "Decoding a JPEG spectral section, nonhierarchical (processes 6 and 8) DICOM image";
8b1baa2315b8 Huge speedup if decoding the family of JPEG transfer syntaxes Sebastien Jodogne <s.jodogne@gmail.com> parents: 1904 diff changeset	755 decoder.reset(new DJDecoderSpectralSelection);
8b1baa2315b8 Huge speedup if decoding the family of JPEG transfer syntaxes Sebastien Jodogne <s.jodogne@gmail.com> parents: 1904 diff changeset	756 break;
8b1baa2315b8 Huge speedup if decoding the family of JPEG transfer syntaxes Sebastien Jodogne <s.jodogne@gmail.com> parents: 1904 diff changeset	757
1944 1a5e070a21c3 fix compilation against DCMTK 3.6.1 Sebastien Jodogne <s.jodogne@gmail.com> parents: 1929 diff changeset	758 case EXS_JPEGProcess10_12: // Retired
1905 8b1baa2315b8 Huge speedup if decoding the family of JPEG transfer syntaxes Sebastien Jodogne <s.jodogne@gmail.com> parents: 1904 diff changeset	759 LOG(INFO) << "Decoding a JPEG full progression, nonhierarchical (processes 10 and 12) DICOM image";
8b1baa2315b8 Huge speedup if decoding the family of JPEG transfer syntaxes Sebastien Jodogne <s.jodogne@gmail.com> parents: 1904 diff changeset	760 decoder.reset(new DJDecoderProgressive);
8b1baa2315b8 Huge speedup if decoding the family of JPEG transfer syntaxes Sebastien Jodogne <s.jodogne@gmail.com> parents: 1904 diff changeset	761 break;
8b1baa2315b8 Huge speedup if decoding the family of JPEG transfer syntaxes Sebastien Jodogne <s.jodogne@gmail.com> parents: 1904 diff changeset	762
1944 1a5e070a21c3 fix compilation against DCMTK 3.6.1 Sebastien Jodogne <s.jodogne@gmail.com> parents: 1929 diff changeset	763 case EXS_JPEGProcess14:
1905 8b1baa2315b8 Huge speedup if decoding the family of JPEG transfer syntaxes Sebastien Jodogne <s.jodogne@gmail.com> parents: 1904 diff changeset	764 LOG(INFO) << "Decoding a JPEG lossless, nonhierarchical (process 14) DICOM image";
8b1baa2315b8 Huge speedup if decoding the family of JPEG transfer syntaxes Sebastien Jodogne <s.jodogne@gmail.com> parents: 1904 diff changeset	765 decoder.reset(new DJDecoderLossless);
8b1baa2315b8 Huge speedup if decoding the family of JPEG transfer syntaxes Sebastien Jodogne <s.jodogne@gmail.com> parents: 1904 diff changeset	766 break;
8b1baa2315b8 Huge speedup if decoding the family of JPEG transfer syntaxes Sebastien Jodogne <s.jodogne@gmail.com> parents: 1904 diff changeset	767
1944 1a5e070a21c3 fix compilation against DCMTK 3.6.1 Sebastien Jodogne <s.jodogne@gmail.com> parents: 1929 diff changeset	768 case EXS_JPEGProcess14SV1:
1905 8b1baa2315b8 Huge speedup if decoding the family of JPEG transfer syntaxes Sebastien Jodogne <s.jodogne@gmail.com> parents: 1904 diff changeset	769 LOG(INFO) << "Decoding a JPEG lossless, nonhierarchical, first-order prediction (process 14 selection value 1) DICOM image";
8b1baa2315b8 Huge speedup if decoding the family of JPEG transfer syntaxes Sebastien Jodogne <s.jodogne@gmail.com> parents: 1904 diff changeset	770 decoder.reset(new DJDecoderP14SV1);
8b1baa2315b8 Huge speedup if decoding the family of JPEG transfer syntaxes Sebastien Jodogne <s.jodogne@gmail.com> parents: 1904 diff changeset	771 break;
8b1baa2315b8 Huge speedup if decoding the family of JPEG transfer syntaxes Sebastien Jodogne <s.jodogne@gmail.com> parents: 1904 diff changeset	772
8b1baa2315b8 Huge speedup if decoding the family of JPEG transfer syntaxes Sebastien Jodogne <s.jodogne@gmail.com> parents: 1904 diff changeset	773 default:
8b1baa2315b8 Huge speedup if decoding the family of JPEG transfer syntaxes Sebastien Jodogne <s.jodogne@gmail.com> parents: 1904 diff changeset	774 throw OrthancException(ErrorCode_InternalError);
8b1baa2315b8 Huge speedup if decoding the family of JPEG transfer syntaxes Sebastien Jodogne <s.jodogne@gmail.com> parents: 1904 diff changeset	775 }
1904 4be8accf8768 clarifications Sebastien Jodogne <s.jodogne@gmail.com> parents: 1903 diff changeset	776
2423 5a7c5c541a1d Built-in decoding of palette images Sebastien Jodogne <s.jodogne@gmail.com> parents: 2415 diff changeset	777 return ApplyCodec(*decoder, parameters, representationParameter, dataset, frame);
1905 8b1baa2315b8 Huge speedup if decoding the family of JPEG transfer syntaxes Sebastien Jodogne <s.jodogne@gmail.com> parents: 1904 diff changeset	778 }
852 5944b8b80842 refactoring Sebastien Jodogne <s.jodogne@gmail.com> parents: 851 diff changeset	779 #endif
5944b8b80842 refactoring Sebastien Jodogne <s.jodogne@gmail.com> parents: 851 diff changeset	780
1904 4be8accf8768 clarifications Sebastien Jodogne <s.jodogne@gmail.com> parents: 1903 diff changeset	781
1905 8b1baa2315b8 Huge speedup if decoding the family of JPEG transfer syntaxes Sebastien Jodogne <s.jodogne@gmail.com> parents: 1904 diff changeset	782 if (syntax == EXS_RLELossless)
8b1baa2315b8 Huge speedup if decoding the family of JPEG transfer syntaxes Sebastien Jodogne <s.jodogne@gmail.com> parents: 1904 diff changeset	783 {
8b1baa2315b8 Huge speedup if decoding the family of JPEG transfer syntaxes Sebastien Jodogne <s.jodogne@gmail.com> parents: 1904 diff changeset	784 LOG(INFO) << "Decoding a RLE lossless DICOM image";
8b1baa2315b8 Huge speedup if decoding the family of JPEG transfer syntaxes Sebastien Jodogne <s.jodogne@gmail.com> parents: 1904 diff changeset	785 DcmRLECodecParameter parameters;
8b1baa2315b8 Huge speedup if decoding the family of JPEG transfer syntaxes Sebastien Jodogne <s.jodogne@gmail.com> parents: 1904 diff changeset	786 DcmRLECodecDecoder decoder;
2423 5a7c5c541a1d Built-in decoding of palette images Sebastien Jodogne <s.jodogne@gmail.com> parents: 2415 diff changeset	787 DcmRLERepresentationParameter representationParameter;
5a7c5c541a1d Built-in decoding of palette images Sebastien Jodogne <s.jodogne@gmail.com> parents: 2415 diff changeset	788 return ApplyCodec(decoder, parameters, representationParameter, dataset, frame);
1905 8b1baa2315b8 Huge speedup if decoding the family of JPEG transfer syntaxes Sebastien Jodogne <s.jodogne@gmail.com> parents: 1904 diff changeset	789 }
1904 4be8accf8768 clarifications Sebastien Jodogne <s.jodogne@gmail.com> parents: 1903 diff changeset	790
4be8accf8768 clarifications Sebastien Jodogne <s.jodogne@gmail.com> parents: 1903 diff changeset	791
847 03ea55da7429 fully functional JPEG-LS conversion Sebastien Jodogne <s.jodogne@gmail.com> parents: 846 diff changeset	792 /**
03ea55da7429 fully functional JPEG-LS conversion Sebastien Jodogne <s.jodogne@gmail.com> parents: 846 diff changeset	793 * This DICOM image format is not natively supported by
1905 8b1baa2315b8 Huge speedup if decoding the family of JPEG transfer syntaxes Sebastien Jodogne <s.jodogne@gmail.com> parents: 1904 diff changeset	794 * Orthanc. As a last resort, try and decode it through DCMTK by
8b1baa2315b8 Huge speedup if decoding the family of JPEG transfer syntaxes Sebastien Jodogne <s.jodogne@gmail.com> parents: 1904 diff changeset	795 * converting its transfer syntax to Little Endian. This will
8b1baa2315b8 Huge speedup if decoding the family of JPEG transfer syntaxes Sebastien Jodogne <s.jodogne@gmail.com> parents: 1904 diff changeset	796 * result in higher memory consumption. This is actually the
8b1baa2315b8 Huge speedup if decoding the family of JPEG transfer syntaxes Sebastien Jodogne <s.jodogne@gmail.com> parents: 1904 diff changeset	797 * second example of the following page:
847 03ea55da7429 fully functional JPEG-LS conversion Sebastien Jodogne <s.jodogne@gmail.com> parents: 846 diff changeset	798 * http://support.dcmtk.org/docs/mod_dcmjpeg.html#Examples
03ea55da7429 fully functional JPEG-LS conversion Sebastien Jodogne <s.jodogne@gmail.com> parents: 846 diff changeset	799 **/
03ea55da7429 fully functional JPEG-LS conversion Sebastien Jodogne <s.jodogne@gmail.com> parents: 846 diff changeset	800
03ea55da7429 fully functional JPEG-LS conversion Sebastien Jodogne <s.jodogne@gmail.com> parents: 846 diff changeset	801 {
3932 bf46e10de8ae clarifying debug message Sebastien Jodogne <s.jodogne@gmail.com> parents: 3883 diff changeset	802 LOG(INFO) << "Trying to decode a compressed image by transcoding it to Little Endian Explicit";
847 03ea55da7429 fully functional JPEG-LS conversion Sebastien Jodogne <s.jodogne@gmail.com> parents: 846 diff changeset	803
3712 2a170a8f1faf replacing std::auto_ptr by std::unique_ptr Sebastien Jodogne <s.jodogne@gmail.com> parents: 3640 diff changeset	804 std::unique_ptr<DcmDataset> converted(dynamic_cast<DcmDataset*>(dataset.clone()));
847 03ea55da7429 fully functional JPEG-LS conversion Sebastien Jodogne <s.jodogne@gmail.com> parents: 846 diff changeset	805 converted->chooseRepresentation(EXS_LittleEndianExplicit, NULL);
03ea55da7429 fully functional JPEG-LS conversion Sebastien Jodogne <s.jodogne@gmail.com> parents: 846 diff changeset	806
03ea55da7429 fully functional JPEG-LS conversion Sebastien Jodogne <s.jodogne@gmail.com> parents: 846 diff changeset	807 if (converted->canWriteXfer(EXS_LittleEndianExplicit))
03ea55da7429 fully functional JPEG-LS conversion Sebastien Jodogne <s.jodogne@gmail.com> parents: 846 diff changeset	808 {
1903 554ec8422ec5 refactoring Sebastien Jodogne <s.jodogne@gmail.com> parents: 1902 diff changeset	809 return DecodeUncompressedImage(*converted, frame);
847 03ea55da7429 fully functional JPEG-LS conversion Sebastien Jodogne <s.jodogne@gmail.com> parents: 846 diff changeset	810 }
03ea55da7429 fully functional JPEG-LS conversion Sebastien Jodogne <s.jodogne@gmail.com> parents: 846 diff changeset	811 }
03ea55da7429 fully functional JPEG-LS conversion Sebastien Jodogne <s.jodogne@gmail.com> parents: 846 diff changeset	812
3932 bf46e10de8ae clarifying debug message Sebastien Jodogne <s.jodogne@gmail.com> parents: 3883 diff changeset	813 DicomTransferSyntax s;
bf46e10de8ae clarifying debug message Sebastien Jodogne <s.jodogne@gmail.com> parents: 3883 diff changeset	814 if (FromDcmtkBridge::LookupOrthancTransferSyntax(s, dataset.getCurrentXfer()))
bf46e10de8ae clarifying debug message Sebastien Jodogne <s.jodogne@gmail.com> parents: 3883 diff changeset	815 {
bf46e10de8ae clarifying debug message Sebastien Jodogne <s.jodogne@gmail.com> parents: 3883 diff changeset	816 throw OrthancException(ErrorCode_NotImplemented,
bf46e10de8ae clarifying debug message Sebastien Jodogne <s.jodogne@gmail.com> parents: 3883 diff changeset	817 "The built-in DCMTK decoder cannot decode some DICOM instance "
bf46e10de8ae clarifying debug message Sebastien Jodogne <s.jodogne@gmail.com> parents: 3883 diff changeset	818 "whose transfer syntax is: " + std::string(GetTransferSyntaxUid(s)));
bf46e10de8ae clarifying debug message Sebastien Jodogne <s.jodogne@gmail.com> parents: 3883 diff changeset	819 }
bf46e10de8ae clarifying debug message Sebastien Jodogne <s.jodogne@gmail.com> parents: 3883 diff changeset	820 else
bf46e10de8ae clarifying debug message Sebastien Jodogne <s.jodogne@gmail.com> parents: 3883 diff changeset	821 {
bf46e10de8ae clarifying debug message Sebastien Jodogne <s.jodogne@gmail.com> parents: 3883 diff changeset	822 throw OrthancException(ErrorCode_NotImplemented,
bf46e10de8ae clarifying debug message Sebastien Jodogne <s.jodogne@gmail.com> parents: 3883 diff changeset	823 "The built-in DCMTK decoder cannot decode some DICOM instance");
bf46e10de8ae clarifying debug message Sebastien Jodogne <s.jodogne@gmail.com> parents: 3883 diff changeset	824 }
847 03ea55da7429 fully functional JPEG-LS conversion Sebastien Jodogne <s.jodogne@gmail.com> parents: 846 diff changeset	825 }
859 610a9a1ed855 ImageProcessing::Convert Sebastien Jodogne <s.jodogne@gmail.com> parents: 858 diff changeset	826
610a9a1ed855 ImageProcessing::Convert Sebastien Jodogne <s.jodogne@gmail.com> parents: 858 diff changeset	827
1015 f009f7c75069 fix integration tests Sebastien Jodogne <s.jodogne@gmail.com> parents: 942 diff changeset	828 static bool IsColorImage(PixelFormat format)
f009f7c75069 fix integration tests Sebastien Jodogne <s.jodogne@gmail.com> parents: 942 diff changeset	829 {
f009f7c75069 fix integration tests Sebastien Jodogne <s.jodogne@gmail.com> parents: 942 diff changeset	830 return (format == PixelFormat_RGB24 \|\|
f009f7c75069 fix integration tests Sebastien Jodogne <s.jodogne@gmail.com> parents: 942 diff changeset	831 format == PixelFormat_RGBA32);
f009f7c75069 fix integration tests Sebastien Jodogne <s.jodogne@gmail.com> parents: 942 diff changeset	832 }
f009f7c75069 fix integration tests Sebastien Jodogne <s.jodogne@gmail.com> parents: 942 diff changeset	833
f009f7c75069 fix integration tests Sebastien Jodogne <s.jodogne@gmail.com> parents: 942 diff changeset	834
3712 2a170a8f1faf replacing std::auto_ptr by std::unique_ptr Sebastien Jodogne <s.jodogne@gmail.com> parents: 3640 diff changeset	835 bool DicomImageDecoder::TruncateDecodedImage(std::unique_ptr<ImageAccessor>& image,
1824 b530c3dfe2a6 refactoring image decoding Sebastien Jodogne <s.jodogne@gmail.com> parents: 1612 diff changeset	836 PixelFormat format,
b530c3dfe2a6 refactoring image decoding Sebastien Jodogne <s.jodogne@gmail.com> parents: 1612 diff changeset	837 bool allowColorConversion)
859 610a9a1ed855 ImageProcessing::Convert Sebastien Jodogne <s.jodogne@gmail.com> parents: 858 diff changeset	838 {
1015 f009f7c75069 fix integration tests Sebastien Jodogne <s.jodogne@gmail.com> parents: 942 diff changeset	839 // If specified, prevent the conversion between color and
f009f7c75069 fix integration tests Sebastien Jodogne <s.jodogne@gmail.com> parents: 942 diff changeset	840 // grayscale images
1826 ac5b0b4e2434 refactoring of DicomImageDecoder Sebastien Jodogne <s.jodogne@gmail.com> parents: 1824 diff changeset	841 bool isSourceColor = IsColorImage(image->GetFormat());
1015 f009f7c75069 fix integration tests Sebastien Jodogne <s.jodogne@gmail.com> parents: 942 diff changeset	842 bool isTargetColor = IsColorImage(format);
f009f7c75069 fix integration tests Sebastien Jodogne <s.jodogne@gmail.com> parents: 942 diff changeset	843
f009f7c75069 fix integration tests Sebastien Jodogne <s.jodogne@gmail.com> parents: 942 diff changeset	844 if (!allowColorConversion)
f009f7c75069 fix integration tests Sebastien Jodogne <s.jodogne@gmail.com> parents: 942 diff changeset	845 {
f009f7c75069 fix integration tests Sebastien Jodogne <s.jodogne@gmail.com> parents: 942 diff changeset	846 if (isSourceColor ^ isTargetColor)
f009f7c75069 fix integration tests Sebastien Jodogne <s.jodogne@gmail.com> parents: 942 diff changeset	847 {
f009f7c75069 fix integration tests Sebastien Jodogne <s.jodogne@gmail.com> parents: 942 diff changeset	848 return false;
f009f7c75069 fix integration tests Sebastien Jodogne <s.jodogne@gmail.com> parents: 942 diff changeset	849 }
f009f7c75069 fix integration tests Sebastien Jodogne <s.jodogne@gmail.com> parents: 942 diff changeset	850 }
f009f7c75069 fix integration tests Sebastien Jodogne <s.jodogne@gmail.com> parents: 942 diff changeset	851
1826 ac5b0b4e2434 refactoring of DicomImageDecoder Sebastien Jodogne <s.jodogne@gmail.com> parents: 1824 diff changeset	852 if (image->GetFormat() != format)
863 3c0d0836f704 refactoring Sebastien Jodogne <s.jodogne@gmail.com> parents: 861 diff changeset	853 {
1826 ac5b0b4e2434 refactoring of DicomImageDecoder Sebastien Jodogne <s.jodogne@gmail.com> parents: 1824 diff changeset	854 // A conversion is required
3712 2a170a8f1faf replacing std::auto_ptr by std::unique_ptr Sebastien Jodogne <s.jodogne@gmail.com> parents: 3640 diff changeset	855 std::unique_ptr<ImageAccessor> target
2423 5a7c5c541a1d Built-in decoding of palette images Sebastien Jodogne <s.jodogne@gmail.com> parents: 2415 diff changeset	856 (new Image(format, image->GetWidth(), image->GetHeight(), false));
1826 ac5b0b4e2434 refactoring of DicomImageDecoder Sebastien Jodogne <s.jodogne@gmail.com> parents: 1824 diff changeset	857 ImageProcessing::Convert(target, image);
3712 2a170a8f1faf replacing std::auto_ptr by std::unique_ptr Sebastien Jodogne <s.jodogne@gmail.com> parents: 3640 diff changeset	858
2a170a8f1faf replacing std::auto_ptr by std::unique_ptr Sebastien Jodogne <s.jodogne@gmail.com> parents: 3640 diff changeset	859 #if __cplusplus < 201103L
2a170a8f1faf replacing std::auto_ptr by std::unique_ptr Sebastien Jodogne <s.jodogne@gmail.com> parents: 3640 diff changeset	860 image.reset(target.release());
2a170a8f1faf replacing std::auto_ptr by std::unique_ptr Sebastien Jodogne <s.jodogne@gmail.com> parents: 3640 diff changeset	861 #else
2a170a8f1faf replacing std::auto_ptr by std::unique_ptr Sebastien Jodogne <s.jodogne@gmail.com> parents: 3640 diff changeset	862 image = std::move(target);
2a170a8f1faf replacing std::auto_ptr by std::unique_ptr Sebastien Jodogne <s.jodogne@gmail.com> parents: 3640 diff changeset	863 #endif
863 3c0d0836f704 refactoring Sebastien Jodogne <s.jodogne@gmail.com> parents: 861 diff changeset	864 }
859 610a9a1ed855 ImageProcessing::Convert Sebastien Jodogne <s.jodogne@gmail.com> parents: 858 diff changeset	865
863 3c0d0836f704 refactoring Sebastien Jodogne <s.jodogne@gmail.com> parents: 861 diff changeset	866 return true;
3c0d0836f704 refactoring Sebastien Jodogne <s.jodogne@gmail.com> parents: 861 diff changeset	867 }
3c0d0836f704 refactoring Sebastien Jodogne <s.jodogne@gmail.com> parents: 861 diff changeset	868
3c0d0836f704 refactoring Sebastien Jodogne <s.jodogne@gmail.com> parents: 861 diff changeset	869
3712 2a170a8f1faf replacing std::auto_ptr by std::unique_ptr Sebastien Jodogne <s.jodogne@gmail.com> parents: 3640 diff changeset	870 bool DicomImageDecoder::PreviewDecodedImage(std::unique_ptr<ImageAccessor>& image)
863 3c0d0836f704 refactoring Sebastien Jodogne <s.jodogne@gmail.com> parents: 861 diff changeset	871 {
1826 ac5b0b4e2434 refactoring of DicomImageDecoder Sebastien Jodogne <s.jodogne@gmail.com> parents: 1824 diff changeset	872 switch (image->GetFormat())
861 a546b05a43da fix PngWriter Sebastien Jodogne <s.jodogne@gmail.com> parents: 860 diff changeset	873 {
863 3c0d0836f704 refactoring Sebastien Jodogne <s.jodogne@gmail.com> parents: 861 diff changeset	874 case PixelFormat_RGB24:
859 610a9a1ed855 ImageProcessing::Convert Sebastien Jodogne <s.jodogne@gmail.com> parents: 858 diff changeset	875 {
1826 ac5b0b4e2434 refactoring of DicomImageDecoder Sebastien Jodogne <s.jodogne@gmail.com> parents: 1824 diff changeset	876 // Directly return color images without modification (RGB)
859 610a9a1ed855 ImageProcessing::Convert Sebastien Jodogne <s.jodogne@gmail.com> parents: 858 diff changeset	877 return true;
610a9a1ed855 ImageProcessing::Convert Sebastien Jodogne <s.jodogne@gmail.com> parents: 858 diff changeset	878 }
610a9a1ed855 ImageProcessing::Convert Sebastien Jodogne <s.jodogne@gmail.com> parents: 858 diff changeset	879
2423 5a7c5c541a1d Built-in decoding of palette images Sebastien Jodogne <s.jodogne@gmail.com> parents: 2415 diff changeset	880 case PixelFormat_RGB48:
5a7c5c541a1d Built-in decoding of palette images Sebastien Jodogne <s.jodogne@gmail.com> parents: 2415 diff changeset	881 {
3712 2a170a8f1faf replacing std::auto_ptr by std::unique_ptr Sebastien Jodogne <s.jodogne@gmail.com> parents: 3640 diff changeset	882 std::unique_ptr<ImageAccessor> target
2423 5a7c5c541a1d Built-in decoding of palette images Sebastien Jodogne <s.jodogne@gmail.com> parents: 2415 diff changeset	883 (new Image(PixelFormat_RGB24, image->GetWidth(), image->GetHeight(), false));
5a7c5c541a1d Built-in decoding of palette images Sebastien Jodogne <s.jodogne@gmail.com> parents: 2415 diff changeset	884 ImageProcessing::Convert(target, image);
3712 2a170a8f1faf replacing std::auto_ptr by std::unique_ptr Sebastien Jodogne <s.jodogne@gmail.com> parents: 3640 diff changeset	885
2a170a8f1faf replacing std::auto_ptr by std::unique_ptr Sebastien Jodogne <s.jodogne@gmail.com> parents: 3640 diff changeset	886 #if __cplusplus < 201103L
2a170a8f1faf replacing std::auto_ptr by std::unique_ptr Sebastien Jodogne <s.jodogne@gmail.com> parents: 3640 diff changeset	887 image.reset(target.release());
2a170a8f1faf replacing std::auto_ptr by std::unique_ptr Sebastien Jodogne <s.jodogne@gmail.com> parents: 3640 diff changeset	888 #else
2a170a8f1faf replacing std::auto_ptr by std::unique_ptr Sebastien Jodogne <s.jodogne@gmail.com> parents: 3640 diff changeset	889 image = std::move(target);
2a170a8f1faf replacing std::auto_ptr by std::unique_ptr Sebastien Jodogne <s.jodogne@gmail.com> parents: 3640 diff changeset	890 #endif
2a170a8f1faf replacing std::auto_ptr by std::unique_ptr Sebastien Jodogne <s.jodogne@gmail.com> parents: 3640 diff changeset	891
2423 5a7c5c541a1d Built-in decoding of palette images Sebastien Jodogne <s.jodogne@gmail.com> parents: 2415 diff changeset	892 return true;
5a7c5c541a1d Built-in decoding of palette images Sebastien Jodogne <s.jodogne@gmail.com> parents: 2415 diff changeset	893 }
5a7c5c541a1d Built-in decoding of palette images Sebastien Jodogne <s.jodogne@gmail.com> parents: 2415 diff changeset	894
863 3c0d0836f704 refactoring Sebastien Jodogne <s.jodogne@gmail.com> parents: 861 diff changeset	895 case PixelFormat_Grayscale8:
3c0d0836f704 refactoring Sebastien Jodogne <s.jodogne@gmail.com> parents: 861 diff changeset	896 case PixelFormat_Grayscale16:
3c0d0836f704 refactoring Sebastien Jodogne <s.jodogne@gmail.com> parents: 861 diff changeset	897 case PixelFormat_SignedGrayscale16:
3c0d0836f704 refactoring Sebastien Jodogne <s.jodogne@gmail.com> parents: 861 diff changeset	898 {
3c0d0836f704 refactoring Sebastien Jodogne <s.jodogne@gmail.com> parents: 861 diff changeset	899 // Grayscale image: Stretch its dynamics to the [0,255] range
1826 ac5b0b4e2434 refactoring of DicomImageDecoder Sebastien Jodogne <s.jodogne@gmail.com> parents: 1824 diff changeset	900 int64_t a, b;
2415 7e217a1cc63f PixelFormat_Float32 Sebastien Jodogne <s.jodogne@gmail.com> parents: 2382 diff changeset	901 ImageProcessing::GetMinMaxIntegerValue(a, b, *image);
863 3c0d0836f704 refactoring Sebastien Jodogne <s.jodogne@gmail.com> parents: 861 diff changeset	902
3c0d0836f704 refactoring Sebastien Jodogne <s.jodogne@gmail.com> parents: 861 diff changeset	903 if (a == b)
3c0d0836f704 refactoring Sebastien Jodogne <s.jodogne@gmail.com> parents: 861 diff changeset	904 {
1826 ac5b0b4e2434 refactoring of DicomImageDecoder Sebastien Jodogne <s.jodogne@gmail.com> parents: 1824 diff changeset	905 ImageProcessing::Set(*image, 0);
863 3c0d0836f704 refactoring Sebastien Jodogne <s.jodogne@gmail.com> parents: 861 diff changeset	906 }
3c0d0836f704 refactoring Sebastien Jodogne <s.jodogne@gmail.com> parents: 861 diff changeset	907 else
3c0d0836f704 refactoring Sebastien Jodogne <s.jodogne@gmail.com> parents: 861 diff changeset	908 {
2423 5a7c5c541a1d Built-in decoding of palette images Sebastien Jodogne <s.jodogne@gmail.com> parents: 2415 diff changeset	909 ImageProcessing::ShiftScale(*image, static_cast<float>(-a),
2488 345725b9350c back to rounding to fix integration tests Sebastien Jodogne <s.jodogne@gmail.com> parents: 2447 diff changeset	910 255.0f / static_cast<float>(b - a),
345725b9350c back to rounding to fix integration tests Sebastien Jodogne <s.jodogne@gmail.com> parents: 2447 diff changeset	911 true /* TODO - Consider using "false" to speed up */);
1826 ac5b0b4e2434 refactoring of DicomImageDecoder Sebastien Jodogne <s.jodogne@gmail.com> parents: 1824 diff changeset	912 }
863 3c0d0836f704 refactoring Sebastien Jodogne <s.jodogne@gmail.com> parents: 861 diff changeset	913
1826 ac5b0b4e2434 refactoring of DicomImageDecoder Sebastien Jodogne <s.jodogne@gmail.com> parents: 1824 diff changeset	914 // If the source image is not grayscale 8bpp, convert it
ac5b0b4e2434 refactoring of DicomImageDecoder Sebastien Jodogne <s.jodogne@gmail.com> parents: 1824 diff changeset	915 if (image->GetFormat() != PixelFormat_Grayscale8)
ac5b0b4e2434 refactoring of DicomImageDecoder Sebastien Jodogne <s.jodogne@gmail.com> parents: 1824 diff changeset	916 {
3712 2a170a8f1faf replacing std::auto_ptr by std::unique_ptr Sebastien Jodogne <s.jodogne@gmail.com> parents: 3640 diff changeset	917 std::unique_ptr<ImageAccessor> target
2423 5a7c5c541a1d Built-in decoding of palette images Sebastien Jodogne <s.jodogne@gmail.com> parents: 2415 diff changeset	918 (new Image(PixelFormat_Grayscale8, image->GetWidth(), image->GetHeight(), false));
1826 ac5b0b4e2434 refactoring of DicomImageDecoder Sebastien Jodogne <s.jodogne@gmail.com> parents: 1824 diff changeset	919 ImageProcessing::Convert(target, image);
3712 2a170a8f1faf replacing std::auto_ptr by std::unique_ptr Sebastien Jodogne <s.jodogne@gmail.com> parents: 3640 diff changeset	920
2a170a8f1faf replacing std::auto_ptr by std::unique_ptr Sebastien Jodogne <s.jodogne@gmail.com> parents: 3640 diff changeset	921 #if __cplusplus < 201103L
2a170a8f1faf replacing std::auto_ptr by std::unique_ptr Sebastien Jodogne <s.jodogne@gmail.com> parents: 3640 diff changeset	922 image.reset(target.release());
2a170a8f1faf replacing std::auto_ptr by std::unique_ptr Sebastien Jodogne <s.jodogne@gmail.com> parents: 3640 diff changeset	923 #else
2a170a8f1faf replacing std::auto_ptr by std::unique_ptr Sebastien Jodogne <s.jodogne@gmail.com> parents: 3640 diff changeset	924 image = std::move(target);
2a170a8f1faf replacing std::auto_ptr by std::unique_ptr Sebastien Jodogne <s.jodogne@gmail.com> parents: 3640 diff changeset	925 #endif
863 3c0d0836f704 refactoring Sebastien Jodogne <s.jodogne@gmail.com> parents: 861 diff changeset	926 }
3c0d0836f704 refactoring Sebastien Jodogne <s.jodogne@gmail.com> parents: 861 diff changeset	927
3c0d0836f704 refactoring Sebastien Jodogne <s.jodogne@gmail.com> parents: 861 diff changeset	928 return true;
3c0d0836f704 refactoring Sebastien Jodogne <s.jodogne@gmail.com> parents: 861 diff changeset	929 }
3c0d0836f704 refactoring Sebastien Jodogne <s.jodogne@gmail.com> parents: 861 diff changeset	930
859 610a9a1ed855 ImageProcessing::Convert Sebastien Jodogne <s.jodogne@gmail.com> parents: 858 diff changeset	931 default:
610a9a1ed855 ImageProcessing::Convert Sebastien Jodogne <s.jodogne@gmail.com> parents: 858 diff changeset	932 throw OrthancException(ErrorCode_NotImplemented);
610a9a1ed855 ImageProcessing::Convert Sebastien Jodogne <s.jodogne@gmail.com> parents: 858 diff changeset	933 }
610a9a1ed855 ImageProcessing::Convert Sebastien Jodogne <s.jodogne@gmail.com> parents: 858 diff changeset	934 }
1902 8b0ee8d5e6d0 Refactoring leading to speedups with custom image decoders Sebastien Jodogne <s.jodogne@gmail.com> parents: 1900 diff changeset	935
8b0ee8d5e6d0 Refactoring leading to speedups with custom image decoders Sebastien Jodogne <s.jodogne@gmail.com> parents: 1900 diff changeset	936
3712 2a170a8f1faf replacing std::auto_ptr by std::unique_ptr Sebastien Jodogne <s.jodogne@gmail.com> parents: 3640 diff changeset	937 void DicomImageDecoder::ApplyExtractionMode(std::unique_ptr<ImageAccessor>& image,
2281 e002430baa41 Fix issue #44 (Bad interpretation of photometric interpretation MONOCHROME1) Sebastien Jodogne <s.jodogne@gmail.com> parents: 2244 diff changeset	938 ImageExtractionMode mode,
e002430baa41 Fix issue #44 (Bad interpretation of photometric interpretation MONOCHROME1) Sebastien Jodogne <s.jodogne@gmail.com> parents: 2244 diff changeset	939 bool invert)
1902 8b0ee8d5e6d0 Refactoring leading to speedups with custom image decoders Sebastien Jodogne <s.jodogne@gmail.com> parents: 1900 diff changeset	940 {
8b0ee8d5e6d0 Refactoring leading to speedups with custom image decoders Sebastien Jodogne <s.jodogne@gmail.com> parents: 1900 diff changeset	941 if (image.get() == NULL)
8b0ee8d5e6d0 Refactoring leading to speedups with custom image decoders Sebastien Jodogne <s.jodogne@gmail.com> parents: 1900 diff changeset	942 {
8b0ee8d5e6d0 Refactoring leading to speedups with custom image decoders Sebastien Jodogne <s.jodogne@gmail.com> parents: 1900 diff changeset	943 throw OrthancException(ErrorCode_ParameterOutOfRange);
8b0ee8d5e6d0 Refactoring leading to speedups with custom image decoders Sebastien Jodogne <s.jodogne@gmail.com> parents: 1900 diff changeset	944 }
8b0ee8d5e6d0 Refactoring leading to speedups with custom image decoders Sebastien Jodogne <s.jodogne@gmail.com> parents: 1900 diff changeset	945
8b0ee8d5e6d0 Refactoring leading to speedups with custom image decoders Sebastien Jodogne <s.jodogne@gmail.com> parents: 1900 diff changeset	946 bool ok = false;
8b0ee8d5e6d0 Refactoring leading to speedups with custom image decoders Sebastien Jodogne <s.jodogne@gmail.com> parents: 1900 diff changeset	947
8b0ee8d5e6d0 Refactoring leading to speedups with custom image decoders Sebastien Jodogne <s.jodogne@gmail.com> parents: 1900 diff changeset	948 switch (mode)
8b0ee8d5e6d0 Refactoring leading to speedups with custom image decoders Sebastien Jodogne <s.jodogne@gmail.com> parents: 1900 diff changeset	949 {
8b0ee8d5e6d0 Refactoring leading to speedups with custom image decoders Sebastien Jodogne <s.jodogne@gmail.com> parents: 1900 diff changeset	950 case ImageExtractionMode_UInt8:
8b0ee8d5e6d0 Refactoring leading to speedups with custom image decoders Sebastien Jodogne <s.jodogne@gmail.com> parents: 1900 diff changeset	951 ok = TruncateDecodedImage(image, PixelFormat_Grayscale8, false);
8b0ee8d5e6d0 Refactoring leading to speedups with custom image decoders Sebastien Jodogne <s.jodogne@gmail.com> parents: 1900 diff changeset	952 break;
8b0ee8d5e6d0 Refactoring leading to speedups with custom image decoders Sebastien Jodogne <s.jodogne@gmail.com> parents: 1900 diff changeset	953
8b0ee8d5e6d0 Refactoring leading to speedups with custom image decoders Sebastien Jodogne <s.jodogne@gmail.com> parents: 1900 diff changeset	954 case ImageExtractionMode_UInt16:
8b0ee8d5e6d0 Refactoring leading to speedups with custom image decoders Sebastien Jodogne <s.jodogne@gmail.com> parents: 1900 diff changeset	955 ok = TruncateDecodedImage(image, PixelFormat_Grayscale16, false);
8b0ee8d5e6d0 Refactoring leading to speedups with custom image decoders Sebastien Jodogne <s.jodogne@gmail.com> parents: 1900 diff changeset	956 break;
8b0ee8d5e6d0 Refactoring leading to speedups with custom image decoders Sebastien Jodogne <s.jodogne@gmail.com> parents: 1900 diff changeset	957
8b0ee8d5e6d0 Refactoring leading to speedups with custom image decoders Sebastien Jodogne <s.jodogne@gmail.com> parents: 1900 diff changeset	958 case ImageExtractionMode_Int16:
8b0ee8d5e6d0 Refactoring leading to speedups with custom image decoders Sebastien Jodogne <s.jodogne@gmail.com> parents: 1900 diff changeset	959 ok = TruncateDecodedImage(image, PixelFormat_SignedGrayscale16, false);
8b0ee8d5e6d0 Refactoring leading to speedups with custom image decoders Sebastien Jodogne <s.jodogne@gmail.com> parents: 1900 diff changeset	960 break;
8b0ee8d5e6d0 Refactoring leading to speedups with custom image decoders Sebastien Jodogne <s.jodogne@gmail.com> parents: 1900 diff changeset	961
8b0ee8d5e6d0 Refactoring leading to speedups with custom image decoders Sebastien Jodogne <s.jodogne@gmail.com> parents: 1900 diff changeset	962 case ImageExtractionMode_Preview:
8b0ee8d5e6d0 Refactoring leading to speedups with custom image decoders Sebastien Jodogne <s.jodogne@gmail.com> parents: 1900 diff changeset	963 ok = PreviewDecodedImage(image);
8b0ee8d5e6d0 Refactoring leading to speedups with custom image decoders Sebastien Jodogne <s.jodogne@gmail.com> parents: 1900 diff changeset	964 break;
8b0ee8d5e6d0 Refactoring leading to speedups with custom image decoders Sebastien Jodogne <s.jodogne@gmail.com> parents: 1900 diff changeset	965
8b0ee8d5e6d0 Refactoring leading to speedups with custom image decoders Sebastien Jodogne <s.jodogne@gmail.com> parents: 1900 diff changeset	966 default:
8b0ee8d5e6d0 Refactoring leading to speedups with custom image decoders Sebastien Jodogne <s.jodogne@gmail.com> parents: 1900 diff changeset	967 throw OrthancException(ErrorCode_ParameterOutOfRange);
8b0ee8d5e6d0 Refactoring leading to speedups with custom image decoders Sebastien Jodogne <s.jodogne@gmail.com> parents: 1900 diff changeset	968 }
8b0ee8d5e6d0 Refactoring leading to speedups with custom image decoders Sebastien Jodogne <s.jodogne@gmail.com> parents: 1900 diff changeset	969
8b0ee8d5e6d0 Refactoring leading to speedups with custom image decoders Sebastien Jodogne <s.jodogne@gmail.com> parents: 1900 diff changeset	970 if (ok)
8b0ee8d5e6d0 Refactoring leading to speedups with custom image decoders Sebastien Jodogne <s.jodogne@gmail.com> parents: 1900 diff changeset	971 {
8b0ee8d5e6d0 Refactoring leading to speedups with custom image decoders Sebastien Jodogne <s.jodogne@gmail.com> parents: 1900 diff changeset	972 assert(image.get() != NULL);
2281 e002430baa41 Fix issue #44 (Bad interpretation of photometric interpretation MONOCHROME1) Sebastien Jodogne <s.jodogne@gmail.com> parents: 2244 diff changeset	973
e002430baa41 Fix issue #44 (Bad interpretation of photometric interpretation MONOCHROME1) Sebastien Jodogne <s.jodogne@gmail.com> parents: 2244 diff changeset	974 if (invert)
e002430baa41 Fix issue #44 (Bad interpretation of photometric interpretation MONOCHROME1) Sebastien Jodogne <s.jodogne@gmail.com> parents: 2244 diff changeset	975 {
e002430baa41 Fix issue #44 (Bad interpretation of photometric interpretation MONOCHROME1) Sebastien Jodogne <s.jodogne@gmail.com> parents: 2244 diff changeset	976 Orthanc::ImageProcessing::Invert(*image);
e002430baa41 Fix issue #44 (Bad interpretation of photometric interpretation MONOCHROME1) Sebastien Jodogne <s.jodogne@gmail.com> parents: 2244 diff changeset	977 }
1902 8b0ee8d5e6d0 Refactoring leading to speedups with custom image decoders Sebastien Jodogne <s.jodogne@gmail.com> parents: 1900 diff changeset	978 }
8b0ee8d5e6d0 Refactoring leading to speedups with custom image decoders Sebastien Jodogne <s.jodogne@gmail.com> parents: 1900 diff changeset	979 else
8b0ee8d5e6d0 Refactoring leading to speedups with custom image decoders Sebastien Jodogne <s.jodogne@gmail.com> parents: 1900 diff changeset	980 {
8b0ee8d5e6d0 Refactoring leading to speedups with custom image decoders Sebastien Jodogne <s.jodogne@gmail.com> parents: 1900 diff changeset	981 throw OrthancException(ErrorCode_NotImplemented);
8b0ee8d5e6d0 Refactoring leading to speedups with custom image decoders Sebastien Jodogne <s.jodogne@gmail.com> parents: 1900 diff changeset	982 }
8b0ee8d5e6d0 Refactoring leading to speedups with custom image decoders Sebastien Jodogne <s.jodogne@gmail.com> parents: 1900 diff changeset	983 }
8b0ee8d5e6d0 Refactoring leading to speedups with custom image decoders Sebastien Jodogne <s.jodogne@gmail.com> parents: 1900 diff changeset	984
8b0ee8d5e6d0 Refactoring leading to speedups with custom image decoders Sebastien Jodogne <s.jodogne@gmail.com> parents: 1900 diff changeset	985
2699 52217dc47a4e new image/pam MIME TYPE supported in /instances/../frames/../image-uint8... routes am@osimis.io parents: 2488 diff changeset	986 void DicomImageDecoder::ExtractPamImage(std::string& result,
3712 2a170a8f1faf replacing std::auto_ptr by std::unique_ptr Sebastien Jodogne <s.jodogne@gmail.com> parents: 3640 diff changeset	987 std::unique_ptr<ImageAccessor>& image,
2699 52217dc47a4e new image/pam MIME TYPE supported in /instances/../frames/../image-uint8... routes am@osimis.io parents: 2488 diff changeset	988 ImageExtractionMode mode,
52217dc47a4e new image/pam MIME TYPE supported in /instances/../frames/../image-uint8... routes am@osimis.io parents: 2488 diff changeset	989 bool invert)
52217dc47a4e new image/pam MIME TYPE supported in /instances/../frames/../image-uint8... routes am@osimis.io parents: 2488 diff changeset	990 {
52217dc47a4e new image/pam MIME TYPE supported in /instances/../frames/../image-uint8... routes am@osimis.io parents: 2488 diff changeset	991 ApplyExtractionMode(image, mode, invert);
52217dc47a4e new image/pam MIME TYPE supported in /instances/../frames/../image-uint8... routes am@osimis.io parents: 2488 diff changeset	992
52217dc47a4e new image/pam MIME TYPE supported in /instances/../frames/../image-uint8... routes am@osimis.io parents: 2488 diff changeset	993 PamWriter writer;
52217dc47a4e new image/pam MIME TYPE supported in /instances/../frames/../image-uint8... routes am@osimis.io parents: 2488 diff changeset	994 writer.WriteToMemory(result, *image);
52217dc47a4e new image/pam MIME TYPE supported in /instances/../frames/../image-uint8... routes am@osimis.io parents: 2488 diff changeset	995 }
52217dc47a4e new image/pam MIME TYPE supported in /instances/../frames/../image-uint8... routes am@osimis.io parents: 2488 diff changeset	996
2380 96b3ec054b69 reorganization in macros Sebastien Jodogne <s.jodogne@gmail.com> parents: 2281 diff changeset	997 #if ORTHANC_ENABLE_PNG == 1
1902 8b0ee8d5e6d0 Refactoring leading to speedups with custom image decoders Sebastien Jodogne <s.jodogne@gmail.com> parents: 1900 diff changeset	998 void DicomImageDecoder::ExtractPngImage(std::string& result,
3712 2a170a8f1faf replacing std::auto_ptr by std::unique_ptr Sebastien Jodogne <s.jodogne@gmail.com> parents: 3640 diff changeset	999 std::unique_ptr<ImageAccessor>& image,
2281 e002430baa41 Fix issue #44 (Bad interpretation of photometric interpretation MONOCHROME1) Sebastien Jodogne <s.jodogne@gmail.com> parents: 2244 diff changeset	1000 ImageExtractionMode mode,
e002430baa41 Fix issue #44 (Bad interpretation of photometric interpretation MONOCHROME1) Sebastien Jodogne <s.jodogne@gmail.com> parents: 2244 diff changeset	1001 bool invert)
1902 8b0ee8d5e6d0 Refactoring leading to speedups with custom image decoders Sebastien Jodogne <s.jodogne@gmail.com> parents: 1900 diff changeset	1002 {
2281 e002430baa41 Fix issue #44 (Bad interpretation of photometric interpretation MONOCHROME1) Sebastien Jodogne <s.jodogne@gmail.com> parents: 2244 diff changeset	1003 ApplyExtractionMode(image, mode, invert);
1902 8b0ee8d5e6d0 Refactoring leading to speedups with custom image decoders Sebastien Jodogne <s.jodogne@gmail.com> parents: 1900 diff changeset	1004
8b0ee8d5e6d0 Refactoring leading to speedups with custom image decoders Sebastien Jodogne <s.jodogne@gmail.com> parents: 1900 diff changeset	1005 PngWriter writer;
8b0ee8d5e6d0 Refactoring leading to speedups with custom image decoders Sebastien Jodogne <s.jodogne@gmail.com> parents: 1900 diff changeset	1006 writer.WriteToMemory(result, *image);
8b0ee8d5e6d0 Refactoring leading to speedups with custom image decoders Sebastien Jodogne <s.jodogne@gmail.com> parents: 1900 diff changeset	1007 }
2380 96b3ec054b69 reorganization in macros Sebastien Jodogne <s.jodogne@gmail.com> parents: 2281 diff changeset	1008 #endif
1902 8b0ee8d5e6d0 Refactoring leading to speedups with custom image decoders Sebastien Jodogne <s.jodogne@gmail.com> parents: 1900 diff changeset	1009
8b0ee8d5e6d0 Refactoring leading to speedups with custom image decoders Sebastien Jodogne <s.jodogne@gmail.com> parents: 1900 diff changeset	1010
2380 96b3ec054b69 reorganization in macros Sebastien Jodogne <s.jodogne@gmail.com> parents: 2281 diff changeset	1011 #if ORTHANC_ENABLE_JPEG == 1
1902 8b0ee8d5e6d0 Refactoring leading to speedups with custom image decoders Sebastien Jodogne <s.jodogne@gmail.com> parents: 1900 diff changeset	1012 void DicomImageDecoder::ExtractJpegImage(std::string& result,
3712 2a170a8f1faf replacing std::auto_ptr by std::unique_ptr Sebastien Jodogne <s.jodogne@gmail.com> parents: 3640 diff changeset	1013 std::unique_ptr<ImageAccessor>& image,
1902 8b0ee8d5e6d0 Refactoring leading to speedups with custom image decoders Sebastien Jodogne <s.jodogne@gmail.com> parents: 1900 diff changeset	1014 ImageExtractionMode mode,
2281 e002430baa41 Fix issue #44 (Bad interpretation of photometric interpretation MONOCHROME1) Sebastien Jodogne <s.jodogne@gmail.com> parents: 2244 diff changeset	1015 bool invert,
1902 8b0ee8d5e6d0 Refactoring leading to speedups with custom image decoders Sebastien Jodogne <s.jodogne@gmail.com> parents: 1900 diff changeset	1016 uint8_t quality)
8b0ee8d5e6d0 Refactoring leading to speedups with custom image decoders Sebastien Jodogne <s.jodogne@gmail.com> parents: 1900 diff changeset	1017 {
8b0ee8d5e6d0 Refactoring leading to speedups with custom image decoders Sebastien Jodogne <s.jodogne@gmail.com> parents: 1900 diff changeset	1018 if (mode != ImageExtractionMode_UInt8 &&
8b0ee8d5e6d0 Refactoring leading to speedups with custom image decoders Sebastien Jodogne <s.jodogne@gmail.com> parents: 1900 diff changeset	1019 mode != ImageExtractionMode_Preview)
8b0ee8d5e6d0 Refactoring leading to speedups with custom image decoders Sebastien Jodogne <s.jodogne@gmail.com> parents: 1900 diff changeset	1020 {
8b0ee8d5e6d0 Refactoring leading to speedups with custom image decoders Sebastien Jodogne <s.jodogne@gmail.com> parents: 1900 diff changeset	1021 throw OrthancException(ErrorCode_ParameterOutOfRange);
8b0ee8d5e6d0 Refactoring leading to speedups with custom image decoders Sebastien Jodogne <s.jodogne@gmail.com> parents: 1900 diff changeset	1022 }
8b0ee8d5e6d0 Refactoring leading to speedups with custom image decoders Sebastien Jodogne <s.jodogne@gmail.com> parents: 1900 diff changeset	1023
2281 e002430baa41 Fix issue #44 (Bad interpretation of photometric interpretation MONOCHROME1) Sebastien Jodogne <s.jodogne@gmail.com> parents: 2244 diff changeset	1024 ApplyExtractionMode(image, mode, invert);
1902 8b0ee8d5e6d0 Refactoring leading to speedups with custom image decoders Sebastien Jodogne <s.jodogne@gmail.com> parents: 1900 diff changeset	1025
8b0ee8d5e6d0 Refactoring leading to speedups with custom image decoders Sebastien Jodogne <s.jodogne@gmail.com> parents: 1900 diff changeset	1026 JpegWriter writer;
8b0ee8d5e6d0 Refactoring leading to speedups with custom image decoders Sebastien Jodogne <s.jodogne@gmail.com> parents: 1900 diff changeset	1027 writer.SetQuality(quality);
8b0ee8d5e6d0 Refactoring leading to speedups with custom image decoders Sebastien Jodogne <s.jodogne@gmail.com> parents: 1900 diff changeset	1028 writer.WriteToMemory(result, *image);
8b0ee8d5e6d0 Refactoring leading to speedups with custom image decoders Sebastien Jodogne <s.jodogne@gmail.com> parents: 1900 diff changeset	1029 }
2380 96b3ec054b69 reorganization in macros Sebastien Jodogne <s.jodogne@gmail.com> parents: 2281 diff changeset	1030 #endif
845 48016722c770 refactoring Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	1031 }

Mercurial > hg > orthanc

annotate OrthancFramework/Sources/DicomParsing/Internals/DicomImageDecoder.cpp @ 4136:2724977419fb