Mercurial > hg > orthanc
annotate OrthancServer/Sources/ServerContext.cpp @ 4375:208029732d51 varian
New config option "DeidentifyDimseQueryLogs"
author | Mark Poscablo <Mark.Poscablo@varian.com> |
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date | Tue, 15 Dec 2020 13:59:01 -0500 |
parents | 09ed936fd381 |
children | b002f9abe802 |
rev | line source |
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224 | 1 /** |
2 * Orthanc - A Lightweight, RESTful DICOM Store | |
1900 | 3 * Copyright (C) 2012-2016 Sebastien Jodogne, Medical Physics |
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4 * Department, University Hospital of Liege, Belgium |
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5 * Copyright (C) 2017-2020 Osimis S.A., Belgium |
224 | 6 * |
7 * This program is free software: you can redistribute it and/or | |
8 * modify it under the terms of the GNU General Public License as | |
9 * published by the Free Software Foundation, either version 3 of the | |
10 * License, or (at your option) any later version. | |
11 * | |
12 * In addition, as a special exception, the copyright holders of this | |
13 * program give permission to link the code of its release with the | |
14 * OpenSSL project's "OpenSSL" library (or with modified versions of it | |
15 * that use the same license as the "OpenSSL" library), and distribute | |
16 * the linked executables. You must obey the GNU General Public License | |
17 * in all respects for all of the code used other than "OpenSSL". If you | |
18 * modify file(s) with this exception, you may extend this exception to | |
19 * your version of the file(s), but you are not obligated to do so. If | |
20 * you do not wish to do so, delete this exception statement from your | |
21 * version. If you delete this exception statement from all source files | |
22 * in the program, then also delete it here. | |
23 * | |
24 * This program is distributed in the hope that it will be useful, but | |
25 * WITHOUT ANY WARRANTY; without even the implied warranty of | |
26 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU | |
27 * General Public License for more details. | |
28 * | |
29 * You should have received a copy of the GNU General Public License | |
30 * along with this program. If not, see <http://www.gnu.org/licenses/>. | |
31 **/ | |
32 | |
33 | |
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34 #include "PrecompiledHeadersServer.h" |
224 | 35 #include "ServerContext.h" |
36 | |
4045 | 37 #include "../../OrthancFramework/Sources/Cache/SharedArchive.h" |
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38 #include "../../OrthancFramework/Sources/DicomFormat/DicomElement.h" |
4045 | 39 #include "../../OrthancFramework/Sources/DicomParsing/DcmtkTranscoder.h" |
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40 #include "../../OrthancFramework/Sources/DicomParsing/DicomModification.h" |
4045 | 41 #include "../../OrthancFramework/Sources/DicomParsing/FromDcmtkBridge.h" |
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42 #include "../../OrthancFramework/Sources/DicomParsing/Internals/DicomImageDecoder.h" |
4045 | 43 #include "../../OrthancFramework/Sources/FileStorage/StorageAccessor.h" |
44 #include "../../OrthancFramework/Sources/HttpServer/FilesystemHttpSender.h" | |
45 #include "../../OrthancFramework/Sources/HttpServer/HttpStreamTranscoder.h" | |
46 #include "../../OrthancFramework/Sources/JobsEngine/SetOfInstancesJob.h" | |
47 #include "../../OrthancFramework/Sources/Logging.h" | |
48 #include "../../OrthancFramework/Sources/MetricsRegistry.h" | |
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49 #include "../Plugins/Engine/OrthancPlugins.h" |
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50 |
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51 #include "OrthancConfiguration.h" |
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52 #include "OrthancRestApi/OrthancRestApi.h" |
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53 #include "Search/DatabaseLookup.h" |
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54 #include "ServerJobs/OrthancJobUnserializer.h" |
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55 #include "ServerToolbox.h" |
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56 #include "StorageCommitmentReports.h" |
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57 |
794 | 58 #include <dcmtk/dcmdata/dcfilefo.h> |
224 | 59 |
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60 |
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61 |
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62 #define ENABLE_DICOM_CACHE 1 |
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63 |
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64 static const size_t DICOM_CACHE_SIZE = 2; |
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65 |
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66 /** |
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67 * IMPORTANT: We make the assumption that the same instance of |
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68 * FileStorage can be accessed from multiple threads. This seems OK |
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69 * since the filesystem implements the required locking mechanisms, |
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70 * but maybe a read-writer lock on the "FileStorage" could be |
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71 * useful. Conversely, "ServerIndex" already implements mutex-based |
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72 * locking. |
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73 **/ |
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74 |
224 | 75 namespace Orthanc |
76 { | |
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77 void ServerContext::ChangeThread(ServerContext* that, |
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78 unsigned int sleepDelay) |
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79 { |
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80 while (!that->done_) |
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81 { |
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82 std::unique_ptr<IDynamicObject> obj(that->pendingChanges_.Dequeue(sleepDelay)); |
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83 |
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84 if (obj.get() != NULL) |
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85 { |
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86 const ServerIndexChange& change = dynamic_cast<const ServerIndexChange&>(*obj.get()); |
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87 |
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88 boost::shared_lock<boost::shared_mutex> lock(that->listenersMutex_); |
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89 for (ServerListeners::iterator it = that->listeners_.begin(); |
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90 it != that->listeners_.end(); ++it) |
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91 { |
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92 try |
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93 { |
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94 try |
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95 { |
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96 it->GetListener().SignalChange(change); |
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97 } |
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98 catch (std::bad_alloc&) |
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99 { |
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100 LOG(ERROR) << "Not enough memory while signaling a change"; |
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101 } |
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102 catch (...) |
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103 { |
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104 throw OrthancException(ErrorCode_InternalError); |
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105 } |
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106 } |
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107 catch (OrthancException& e) |
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108 { |
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109 LOG(ERROR) << "Error in the " << it->GetDescription() |
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110 << " callback while signaling a change: " << e.What() |
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111 << " (code " << e.GetErrorCode() << ")"; |
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112 } |
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113 } |
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114 } |
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115 } |
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116 } |
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117 |
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118 |
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119 void ServerContext::SaveJobsThread(ServerContext* that, |
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120 unsigned int sleepDelay) |
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121 { |
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122 static const boost::posix_time::time_duration PERIODICITY = |
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123 boost::posix_time::seconds(10); |
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124 |
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125 boost::posix_time::ptime next = |
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126 boost::posix_time::microsec_clock::universal_time() + PERIODICITY; |
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127 |
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128 while (!that->done_) |
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129 { |
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130 boost::this_thread::sleep(boost::posix_time::milliseconds(sleepDelay)); |
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131 |
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132 if (that->haveJobsChanged_ || |
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133 boost::posix_time::microsec_clock::universal_time() >= next) |
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134 { |
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135 that->haveJobsChanged_ = false; |
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136 that->SaveJobsEngine(); |
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137 next = boost::posix_time::microsec_clock::universal_time() + PERIODICITY; |
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138 } |
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139 } |
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140 } |
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141 |
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142 |
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143 void ServerContext::SignalJobSubmitted(const std::string& jobId) |
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144 { |
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145 haveJobsChanged_ = true; |
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146 mainLua_.SignalJobSubmitted(jobId); |
4129 | 147 |
148 #if ORTHANC_ENABLE_PLUGINS == 1 | |
149 if (HasPlugins()) | |
150 { | |
151 GetPlugins().SignalJobSubmitted(jobId); | |
152 } | |
153 #endif | |
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154 } |
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155 |
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156 |
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157 void ServerContext::SignalJobSuccess(const std::string& jobId) |
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158 { |
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159 haveJobsChanged_ = true; |
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160 mainLua_.SignalJobSuccess(jobId); |
4129 | 161 |
162 #if ORTHANC_ENABLE_PLUGINS == 1 | |
163 if (HasPlugins()) | |
164 { | |
165 GetPlugins().SignalJobSuccess(jobId); | |
166 } | |
167 #endif | |
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168 } |
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169 |
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170 |
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171 void ServerContext::SignalJobFailure(const std::string& jobId) |
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172 { |
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173 haveJobsChanged_ = true; |
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174 mainLua_.SignalJobFailure(jobId); |
4129 | 175 |
176 #if ORTHANC_ENABLE_PLUGINS == 1 | |
177 if (HasPlugins()) | |
178 { | |
179 GetPlugins().SignalJobFailure(jobId); | |
180 } | |
181 #endif | |
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182 } |
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183 |
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184 |
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185 void ServerContext::SetupJobsEngine(bool unitTesting, |
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186 bool loadJobsFromDatabase) |
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187 { |
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188 if (loadJobsFromDatabase) |
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189 { |
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190 std::string serialized; |
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191 if (index_.LookupGlobalProperty(serialized, GlobalProperty_JobsRegistry)) |
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192 { |
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193 LOG(WARNING) << "Reloading the jobs from the last execution of Orthanc"; |
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194 |
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195 try |
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196 { |
4205 | 197 OrthancJobUnserializer unserializer(*this); |
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198 jobsEngine_.LoadRegistryFromString(unserializer, serialized); |
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199 } |
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200 catch (OrthancException& e) |
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201 { |
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202 LOG(WARNING) << "Cannot unserialize the jobs engine, starting anyway: " << e.What(); |
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203 } |
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204 } |
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205 else |
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206 { |
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207 LOG(INFO) << "The last execution of Orthanc has archived no job"; |
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208 } |
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209 } |
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210 else |
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211 { |
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212 LOG(INFO) << "Not reloading the jobs from the last execution of Orthanc"; |
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213 } |
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214 |
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215 jobsEngine_.GetRegistry().SetObserver(*this); |
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216 jobsEngine_.Start(); |
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217 isJobsEngineUnserialized_ = true; |
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218 |
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219 saveJobsThread_ = boost::thread(SaveJobsThread, this, (unitTesting ? 20 : 100)); |
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220 } |
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221 |
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222 |
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223 void ServerContext::SaveJobsEngine() |
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224 { |
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225 if (saveJobs_) |
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226 { |
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227 LOG(TRACE) << "Serializing the content of the jobs engine"; |
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228 |
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229 try |
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230 { |
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231 Json::Value value; |
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232 jobsEngine_.GetRegistry().Serialize(value); |
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233 |
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234 Json::FastWriter writer; |
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235 std::string serialized = writer.write(value); |
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236 |
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237 index_.SetGlobalProperty(GlobalProperty_JobsRegistry, serialized); |
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238 } |
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239 catch (OrthancException& e) |
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240 { |
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241 LOG(ERROR) << "Cannot serialize the jobs engine: " << e.What(); |
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242 } |
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243 } |
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244 } |
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245 |
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246 |
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247 ServerContext::ServerContext(IDatabaseWrapper& database, |
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248 IStorageArea& area, |
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249 bool unitTesting, |
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250 size_t maxCompletedJobs) : |
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251 index_(*this, database, (unitTesting ? 20 : 500)), |
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252 area_(area), |
656 | 253 compressionEnabled_(false), |
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254 storeMD5_(true), |
285
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255 provider_(*this), |
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256 dicomCache_(provider_, DICOM_CACHE_SIZE), |
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257 mainLua_(*this), |
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258 filterLua_(*this), |
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259 luaListener_(*this), |
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260 jobsEngine_(maxCompletedJobs), |
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261 #if ORTHANC_ENABLE_PLUGINS == 1 |
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262 plugins_(NULL), |
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263 #endif |
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264 done_(false), |
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265 haveJobsChanged_(false), |
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266 isJobsEngineUnserialized_(false), |
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267 metricsRegistry_(new MetricsRegistry), |
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268 isHttpServerSecure_(true), |
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moving SetOverwriteInstances from ServerIndex to ServerContext
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269 isExecuteLuaEnabled_(false), |
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270 overwriteInstances_(false), |
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271 dcmtkTranscoder_(new DcmtkTranscoder), |
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272 isIngestTranscoding_(false), |
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273 deidentifyDimseQueryLogs_(false), |
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274 deidentifyDimseQueryLogsDicomVersion_(DicomVersion_2017c) |
224 | 275 { |
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276 try |
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277 { |
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278 unsigned int lossyQuality; |
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279 |
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280 { |
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281 OrthancConfiguration::ReaderLock lock; |
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282 |
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283 queryRetrieveArchive_.reset( |
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284 new SharedArchive(lock.GetConfiguration().GetUnsignedIntegerParameter("QueryRetrieveSize", 100))); |
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285 mediaArchive_.reset( |
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286 new SharedArchive(lock.GetConfiguration().GetUnsignedIntegerParameter("MediaArchiveSize", 1))); |
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287 defaultLocalAet_ = lock.GetConfiguration().GetOrthancAET(); |
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288 jobsEngine_.SetWorkersCount(lock.GetConfiguration().GetUnsignedIntegerParameter("ConcurrentJobs", 2)); |
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289 saveJobs_ = lock.GetConfiguration().GetBooleanParameter("SaveJobs", true); |
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290 metricsRegistry_->SetEnabled(lock.GetConfiguration().GetBooleanParameter("MetricsEnabled", true)); |
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291 |
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292 // New configuration options in Orthanc 1.5.1 |
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293 findStorageAccessMode_ = StringToFindStorageAccessMode(lock.GetConfiguration().GetStringParameter("StorageAccessOnFind", "Always")); |
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294 limitFindInstances_ = lock.GetConfiguration().GetUnsignedIntegerParameter("LimitFindInstances", 0); |
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295 limitFindResults_ = lock.GetConfiguration().GetUnsignedIntegerParameter("LimitFindResults", 0); |
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296 |
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297 // New configuration option in Orthanc 1.6.0 |
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298 storageCommitmentReports_.reset(new StorageCommitmentReports(lock.GetConfiguration().GetUnsignedIntegerParameter("StorageCommitmentReportsSize", 100))); |
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299 |
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300 // New options in Orthanc 1.7.0 |
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301 transcodeDicomProtocol_ = lock.GetConfiguration().GetBooleanParameter("TranscodeDicomProtocol", true); |
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302 builtinDecoderTranscoderOrder_ = StringToBuiltinDecoderTranscoderOrder(lock.GetConfiguration().GetStringParameter("BuiltinDecoderTranscoderOrder", "After")); |
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303 lossyQuality = lock.GetConfiguration().GetUnsignedIntegerParameter("DicomLossyTranscodingQuality", 90); |
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304 |
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305 std::string s; |
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306 if (lock.GetConfiguration().LookupStringParameter(s, "IngestTranscoding")) |
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307 { |
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308 if (LookupTransferSyntax(ingestTransferSyntax_, s)) |
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309 { |
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310 isIngestTranscoding_ = true; |
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311 LOG(WARNING) << "Incoming DICOM instances will automatically be transcoded to " |
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312 << "transfer syntax: " << GetTransferSyntaxUid(ingestTransferSyntax_); |
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313 } |
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314 else |
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315 { |
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316 throw OrthancException(ErrorCode_ParameterOutOfRange, |
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317 "Unknown transfer syntax for ingest transcoding: " + s); |
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318 } |
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319 } |
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320 else |
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321 { |
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322 isIngestTranscoding_ = false; |
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323 LOG(INFO) << "Automated transcoding of incoming DICOM instances is disabled"; |
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324 } |
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325 |
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326 if (lock.GetConfiguration().GetBooleanParameter("DeidentifyDimseQueryLogs", false)) |
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327 { |
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328 deidentifyDimseQueryLogs_ = true; |
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329 CLOG(INFO, DICOM) << "Deidentification of DIMSE query log contents is enabled"; |
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330 |
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331 deidentifyDimseQueryLogsDicomVersion_ = StringToDicomVersion( |
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332 lock.GetConfiguration().GetStringParameter("DeidentifyDimseQueryLogsDicomVersion", "2017c")); |
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333 CLOG(INFO, DICOM) << "Version of DICOM standard used for deidentification is " |
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334 << EnumerationToString(deidentifyDimseQueryLogsDicomVersion_); |
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335 } |
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336 else |
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337 { |
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338 deidentifyDimseQueryLogs_ = false; |
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339 CLOG(INFO, DICOM) << "Deidentification of DIMSE query log contents is disabled"; |
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340 } |
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341 } |
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342 |
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343 jobsEngine_.SetThreadSleep(unitTesting ? 20 : 200); |
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344 |
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345 listeners_.push_back(ServerListener(luaListener_, "Lua")); |
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346 changeThread_ = boost::thread(ChangeThread, this, (unitTesting ? 20 : 100)); |
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347 |
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348 dynamic_cast<DcmtkTranscoder&>(*dcmtkTranscoder_).SetLossyQuality(lossyQuality); |
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349 |
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350 if (deidentifyDimseQueryLogs_) |
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351 { |
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352 logsDeidentifierRules_.SetupAnonymization(deidentifyDimseQueryLogsDicomVersion_); |
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353 } |
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354 } |
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355 catch (OrthancException&) |
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356 { |
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357 Stop(); |
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358 throw; |
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359 } |
224 | 360 } |
361 | |
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362 |
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363 |
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364 ServerContext::~ServerContext() |
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365 { |
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366 if (!done_) |
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367 { |
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368 LOG(ERROR) << "INTERNAL ERROR: ServerContext::Stop() should be invoked manually to avoid mess in the destruction order!"; |
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369 Stop(); |
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370 } |
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371 } |
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372 |
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373 |
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374 void ServerContext::Stop() |
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375 { |
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376 if (!done_) |
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377 { |
1459 | 378 { |
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379 boost::unique_lock<boost::shared_mutex> lock(listenersMutex_); |
1459 | 380 listeners_.clear(); |
381 } | |
382 | |
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383 done_ = true; |
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384 |
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385 if (changeThread_.joinable()) |
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386 { |
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387 changeThread_.join(); |
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388 } |
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389 |
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390 if (saveJobsThread_.joinable()) |
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391 { |
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392 saveJobsThread_.join(); |
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393 } |
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394 |
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395 jobsEngine_.GetRegistry().ResetObserver(); |
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396 |
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397 if (isJobsEngineUnserialized_) |
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398 { |
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399 // Avoid losing jobs if the JobsRegistry cannot be unserialized |
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400 SaveJobsEngine(); |
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401 } |
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402 |
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403 // Do not change the order below! |
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404 jobsEngine_.Stop(); |
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405 index_.Stop(); |
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406 } |
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407 } |
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408 |
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409 |
236 | 410 void ServerContext::SetCompressionEnabled(bool enabled) |
411 { | |
412 if (enabled) | |
413 LOG(WARNING) << "Disk compression is enabled"; | |
414 else | |
415 LOG(WARNING) << "Disk compression is disabled"; | |
416 | |
417 compressionEnabled_ = enabled; | |
418 } | |
419 | |
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420 |
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421 void ServerContext::RemoveFile(const std::string& fileUuid, |
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422 FileContentType type) |
227
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423 { |
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424 StorageAccessor accessor(area_, GetMetricsRegistry()); |
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425 accessor.Remove(fileUuid, type); |
227
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426 } |
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427 |
996
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clarification of Lua classes wrt multithreading
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428 |
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429 StoreStatus ServerContext::StoreAfterTranscoding(std::string& resultPublicId, |
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430 DicomInstanceToStore& dicom, |
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431 StoreInstanceMode mode) |
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432 { |
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433 bool overwrite; |
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434 switch (mode) |
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435 { |
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436 case StoreInstanceMode_Default: |
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437 overwrite = overwriteInstances_; |
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438 break; |
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439 |
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440 case StoreInstanceMode_OverwriteDuplicate: |
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441 overwrite = true; |
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442 break; |
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443 |
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444 case StoreInstanceMode_IgnoreDuplicate: |
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445 overwrite = false; |
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446 break; |
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447 |
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448 default: |
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449 throw OrthancException(ErrorCode_ParameterOutOfRange); |
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450 } |
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451 |
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452 try |
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453 { |
3175
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454 MetricsRegistry::Timer timer(GetMetricsRegistry(), "orthanc_store_dicom_duration_ms"); |
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455 StorageAccessor accessor(area_, GetMetricsRegistry()); |
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456 |
2898
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DicomInstanceToStore::GetHasher()
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|
457 resultPublicId = dicom.GetHasher().HashInstance(); |
1004
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458 |
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459 Json::Value simplifiedTags; |
4055
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|
460 Toolbox::SimplifyDicomAsJson(simplifiedTags, dicom.GetJson(), DicomToJsonFormat_Human); |
1004
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461 |
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462 // Test if the instance must be filtered out |
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463 bool accepted = true; |
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464 |
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465 { |
3947
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|
466 boost::shared_lock<boost::shared_mutex> lock(listenersMutex_); |
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467 |
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468 for (ServerListeners::iterator it = listeners_.begin(); it != listeners_.end(); ++it) |
1433
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469 { |
1453
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470 try |
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471 { |
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472 if (!it->GetListener().FilterIncomingInstance(dicom, simplifiedTags)) |
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473 { |
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474 accepted = false; |
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475 break; |
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476 } |
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477 } |
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478 catch (OrthancException& e) |
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479 { |
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|
480 LOG(ERROR) << "Error in the " << it->GetDescription() |
2135
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481 << " callback while receiving an instance: " << e.What() |
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482 << " (code " << e.GetErrorCode() << ")"; |
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483 throw; |
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484 } |
1433
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485 } |
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|
486 } |
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487 |
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488 if (!accepted) |
1004
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489 { |
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|
490 LOG(INFO) << "An incoming instance has been discarded by the filter"; |
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491 return StoreStatus_FilteredOut; |
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492 } |
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|
493 |
2825
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New configuration option "OverwriteInstances" to choose how duplicate SOPInstanceUID are handled
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494 { |
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495 // Remove the file from the DicomCache (useful if |
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496 // "OverwriteInstances" is set to "true") |
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497 boost::mutex::scoped_lock lock(dicomCacheMutex_); |
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498 dicomCache_.Invalidate(resultPublicId); |
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499 } |
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|
500 |
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501 // TODO Should we use "gzip" instead? |
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|
502 CompressionType compression = (compressionEnabled_ ? CompressionType_ZlibWithSize : CompressionType_None); |
1004
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|
503 |
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|
504 FileInfo dicomInfo = accessor.Write(dicom.GetBufferData(), dicom.GetBufferSize(), |
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|
505 FileContentType_Dicom, compression, storeMD5_); |
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|
506 FileInfo jsonInfo = accessor.Write(dicom.GetJson().toStyledString(), |
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|
507 FileContentType_DicomAsJson, compression, storeMD5_); |
1004
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|
508 |
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DicomInstanceToStore
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changeset
|
509 ServerIndex::Attachments attachments; |
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DicomInstanceToStore
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|
510 attachments.push_back(dicomInfo); |
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|
511 attachments.push_back(jsonInfo); |
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DicomInstanceToStore
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diff
changeset
|
512 |
1067
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access metadata in plugins
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diff
changeset
|
513 typedef std::map<MetadataType, std::string> InstanceMetadata; |
ace99e272203
access metadata in plugins
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parents:
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diff
changeset
|
514 InstanceMetadata instanceMetadata; |
3813
aaaa442bfe39
moving SetOverwriteInstances from ServerIndex to ServerContext
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3736
diff
changeset
|
515 StoreStatus status = index_.Store( |
3814
023b2a9f3aa1
new enum: StoreInstanceMode
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
516 instanceMetadata, dicom, attachments, overwrite); |
1004
a226e0959d8b
DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
517 |
1433
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refactoring: LuaScripting
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diff
changeset
|
518 // Only keep the metadata for the "instance" level |
1067
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access metadata in plugins
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parents:
1066
diff
changeset
|
519 dicom.GetMetadata().clear(); |
ace99e272203
access metadata in plugins
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parents:
1066
diff
changeset
|
520 |
ace99e272203
access metadata in plugins
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parents:
1066
diff
changeset
|
521 for (InstanceMetadata::const_iterator it = instanceMetadata.begin(); |
1304 | 522 it != instanceMetadata.end(); ++it) |
1067
ace99e272203
access metadata in plugins
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diff
changeset
|
523 { |
ace99e272203
access metadata in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
524 dicom.GetMetadata().insert(std::make_pair(std::make_pair(ResourceType_Instance, it->first), |
ace99e272203
access metadata in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1066
diff
changeset
|
525 it->second)); |
ace99e272203
access metadata in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1066
diff
changeset
|
526 } |
ace99e272203
access metadata in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1066
diff
changeset
|
527 |
1004
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DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
528 if (status != StoreStatus_Success) |
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DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
529 { |
1549
e5e975e9b738
refactoring and simplification of StorageAccessor
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parents:
1548
diff
changeset
|
530 accessor.Remove(dicomInfo); |
e5e975e9b738
refactoring and simplification of StorageAccessor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1548
diff
changeset
|
531 accessor.Remove(jsonInfo); |
1004
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DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1002
diff
changeset
|
532 } |
a226e0959d8b
DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
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1002
diff
changeset
|
533 |
a226e0959d8b
DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1002
diff
changeset
|
534 switch (status) |
a226e0959d8b
DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1002
diff
changeset
|
535 { |
a226e0959d8b
DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
536 case StoreStatus_Success: |
a226e0959d8b
DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
537 LOG(INFO) << "New instance stored"; |
a226e0959d8b
DicomInstanceToStore
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parents:
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diff
changeset
|
538 break; |
a226e0959d8b
DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1002
diff
changeset
|
539 |
a226e0959d8b
DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1002
diff
changeset
|
540 case StoreStatus_AlreadyStored: |
a226e0959d8b
DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1002
diff
changeset
|
541 LOG(INFO) << "Already stored"; |
a226e0959d8b
DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1002
diff
changeset
|
542 break; |
a226e0959d8b
DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1002
diff
changeset
|
543 |
a226e0959d8b
DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1002
diff
changeset
|
544 case StoreStatus_Failure: |
a226e0959d8b
DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1002
diff
changeset
|
545 LOG(ERROR) << "Store failure"; |
a226e0959d8b
DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1002
diff
changeset
|
546 break; |
a226e0959d8b
DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1002
diff
changeset
|
547 |
a226e0959d8b
DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1002
diff
changeset
|
548 default: |
a226e0959d8b
DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1002
diff
changeset
|
549 // This should never happen |
a226e0959d8b
DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1002
diff
changeset
|
550 break; |
a226e0959d8b
DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1002
diff
changeset
|
551 } |
a226e0959d8b
DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1002
diff
changeset
|
552 |
a226e0959d8b
DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1002
diff
changeset
|
553 if (status == StoreStatus_Success || |
a226e0959d8b
DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1002
diff
changeset
|
554 status == StoreStatus_AlreadyStored) |
a226e0959d8b
DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1002
diff
changeset
|
555 { |
3947
cf6eb4fc6841
fix issue 179: use a shared mutex to avoid deadlock in python plugins
Alain Mazy <alain@mazy.be>
parents:
3945
diff
changeset
|
556 boost::shared_lock<boost::shared_mutex> lock(listenersMutex_); |
1453
c0bdc47165ef
code to warn about possible threading problems
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1447
diff
changeset
|
557 |
1433
461e7554bff7
refactoring: LuaScripting
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1427
diff
changeset
|
558 for (ServerListeners::iterator it = listeners_.begin(); it != listeners_.end(); ++it) |
1066
bb82e5e818e9
OnStoredInstance callback in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1065
diff
changeset
|
559 { |
bb82e5e818e9
OnStoredInstance callback in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1065
diff
changeset
|
560 try |
bb82e5e818e9
OnStoredInstance callback in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1065
diff
changeset
|
561 { |
1574
0c29ebe80ac9
give access to full request origin in ReceivedInstanceFilter (Lua)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1550
diff
changeset
|
562 it->GetListener().SignalStoredInstance(resultPublicId, dicom, simplifiedTags); |
1066
bb82e5e818e9
OnStoredInstance callback in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1065
diff
changeset
|
563 } |
bb82e5e818e9
OnStoredInstance callback in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1065
diff
changeset
|
564 catch (OrthancException& e) |
bb82e5e818e9
OnStoredInstance callback in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1065
diff
changeset
|
565 { |
1433
461e7554bff7
refactoring: LuaScripting
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1427
diff
changeset
|
566 LOG(ERROR) << "Error in the " << it->GetDescription() |
2135
cadfe0a2a393
fix in the sample basic plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2134
diff
changeset
|
567 << " callback while receiving an instance: " << e.What() |
cadfe0a2a393
fix in the sample basic plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2134
diff
changeset
|
568 << " (code " << e.GetErrorCode() << ")"; |
1066
bb82e5e818e9
OnStoredInstance callback in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1065
diff
changeset
|
569 } |
bb82e5e818e9
OnStoredInstance callback in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1065
diff
changeset
|
570 } |
1004
a226e0959d8b
DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1002
diff
changeset
|
571 } |
a226e0959d8b
DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1002
diff
changeset
|
572 |
a226e0959d8b
DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1002
diff
changeset
|
573 return status; |
a226e0959d8b
DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1002
diff
changeset
|
574 } |
a226e0959d8b
DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1002
diff
changeset
|
575 catch (OrthancException& e) |
a226e0959d8b
DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1002
diff
changeset
|
576 { |
a226e0959d8b
DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1002
diff
changeset
|
577 if (e.GetErrorCode() == ErrorCode_InexistentTag) |
a226e0959d8b
DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1002
diff
changeset
|
578 { |
2380
96b3ec054b69
reorganization in macros
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2304
diff
changeset
|
579 dicom.GetSummary().LogMissingTagsForStore(); |
1004
a226e0959d8b
DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1002
diff
changeset
|
580 } |
a226e0959d8b
DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1002
diff
changeset
|
581 |
a226e0959d8b
DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1002
diff
changeset
|
582 throw; |
a226e0959d8b
DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1002
diff
changeset
|
583 } |
a226e0959d8b
DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1002
diff
changeset
|
584 } |
a226e0959d8b
DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1002
diff
changeset
|
585 |
a226e0959d8b
DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1002
diff
changeset
|
586 |
3912
7610af1532c3
prototyping automated transcoding of incoming DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3911
diff
changeset
|
587 StoreStatus ServerContext::Store(std::string& resultPublicId, |
7610af1532c3
prototyping automated transcoding of incoming DICOM files
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parents:
3911
diff
changeset
|
588 DicomInstanceToStore& dicom, |
7610af1532c3
prototyping automated transcoding of incoming DICOM files
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parents:
3911
diff
changeset
|
589 StoreInstanceMode mode) |
7610af1532c3
prototyping automated transcoding of incoming DICOM files
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parents:
3911
diff
changeset
|
590 { |
3939
c205f670098e
new configuration options: BuiltinDecoderTranscoderOrder and IngestTranscoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3938
diff
changeset
|
591 if (!isIngestTranscoding_) |
3912
7610af1532c3
prototyping automated transcoding of incoming DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3911
diff
changeset
|
592 { |
3941
771dbd9eb3bd
class CleaningInstancesJob to share cleaning code by merge/split jobs
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3939
diff
changeset
|
593 // No automated transcoding. This was the only path in Orthanc <= 1.6.1. |
3912
7610af1532c3
prototyping automated transcoding of incoming DICOM files
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parents:
3911
diff
changeset
|
594 return StoreAfterTranscoding(resultPublicId, dicom, mode); |
7610af1532c3
prototyping automated transcoding of incoming DICOM files
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parents:
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diff
changeset
|
595 } |
7610af1532c3
prototyping automated transcoding of incoming DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3911
diff
changeset
|
596 else |
7610af1532c3
prototyping automated transcoding of incoming DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3911
diff
changeset
|
597 { |
3939
c205f670098e
new configuration options: BuiltinDecoderTranscoderOrder and IngestTranscoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3938
diff
changeset
|
598 // Automated transcoding of incoming DICOM files |
3945
0b3256c3ee14
simplified IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3944
diff
changeset
|
599 |
3912
7610af1532c3
prototyping automated transcoding of incoming DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3911
diff
changeset
|
600 DicomTransferSyntax sourceSyntax; |
7610af1532c3
prototyping automated transcoding of incoming DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3911
diff
changeset
|
601 if (!FromDcmtkBridge::LookupOrthancTransferSyntax( |
7610af1532c3
prototyping automated transcoding of incoming DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3911
diff
changeset
|
602 sourceSyntax, dicom.GetParsedDicomFile().GetDcmtkObject()) || |
3939
c205f670098e
new configuration options: BuiltinDecoderTranscoderOrder and IngestTranscoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3938
diff
changeset
|
603 sourceSyntax == ingestTransferSyntax_) |
3912
7610af1532c3
prototyping automated transcoding of incoming DICOM files
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parents:
3911
diff
changeset
|
604 { |
7610af1532c3
prototyping automated transcoding of incoming DICOM files
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parents:
3911
diff
changeset
|
605 // No transcoding |
7610af1532c3
prototyping automated transcoding of incoming DICOM files
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parents:
3911
diff
changeset
|
606 return StoreAfterTranscoding(resultPublicId, dicom, mode); |
7610af1532c3
prototyping automated transcoding of incoming DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3911
diff
changeset
|
607 } |
7610af1532c3
prototyping automated transcoding of incoming DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3911
diff
changeset
|
608 else |
7610af1532c3
prototyping automated transcoding of incoming DICOM files
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parents:
3911
diff
changeset
|
609 { |
7610af1532c3
prototyping automated transcoding of incoming DICOM files
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parents:
3911
diff
changeset
|
610 std::set<DicomTransferSyntax> syntaxes; |
3939
c205f670098e
new configuration options: BuiltinDecoderTranscoderOrder and IngestTranscoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3938
diff
changeset
|
611 syntaxes.insert(ingestTransferSyntax_); |
3912
7610af1532c3
prototyping automated transcoding of incoming DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3911
diff
changeset
|
612 |
3945
0b3256c3ee14
simplified IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3944
diff
changeset
|
613 IDicomTranscoder::DicomImage source; |
0b3256c3ee14
simplified IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3944
diff
changeset
|
614 source.SetExternalBuffer(dicom.GetBufferData(), dicom.GetBufferSize()); |
0b3256c3ee14
simplified IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3944
diff
changeset
|
615 |
0b3256c3ee14
simplified IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3944
diff
changeset
|
616 IDicomTranscoder::DicomImage transcoded; |
3951
5fe8c6d3212e
removed useless information "hasSopInstanceUidChanged"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3947
diff
changeset
|
617 if (Transcode(transcoded, source, syntaxes, true /* allow new SOP instance UID */)) |
3912
7610af1532c3
prototyping automated transcoding of incoming DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3911
diff
changeset
|
618 { |
3945
0b3256c3ee14
simplified IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3944
diff
changeset
|
619 std::unique_ptr<ParsedDicomFile> tmp(transcoded.ReleaseAsParsedDicomFile()); |
0b3256c3ee14
simplified IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3944
diff
changeset
|
620 |
3912
7610af1532c3
prototyping automated transcoding of incoming DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3911
diff
changeset
|
621 DicomInstanceToStore toStore; |
7610af1532c3
prototyping automated transcoding of incoming DICOM files
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parents:
3911
diff
changeset
|
622 toStore.SetParsedDicomFile(*tmp); |
7610af1532c3
prototyping automated transcoding of incoming DICOM files
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parents:
3911
diff
changeset
|
623 toStore.SetOrigin(dicom.GetOrigin()); |
7610af1532c3
prototyping automated transcoding of incoming DICOM files
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parents:
3911
diff
changeset
|
624 |
7610af1532c3
prototyping automated transcoding of incoming DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3911
diff
changeset
|
625 StoreStatus ok = StoreAfterTranscoding(resultPublicId, toStore, mode); |
3938 | 626 assert(resultPublicId == tmp->GetHasher().HashInstance()); |
627 | |
3912
7610af1532c3
prototyping automated transcoding of incoming DICOM files
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parents:
3911
diff
changeset
|
628 return ok; |
7610af1532c3
prototyping automated transcoding of incoming DICOM files
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parents:
3911
diff
changeset
|
629 } |
3945
0b3256c3ee14
simplified IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
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|
630 else |
0b3256c3ee14
simplified IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3944
diff
changeset
|
631 { |
0b3256c3ee14
simplified IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
632 // Cannot transcode => store the original file |
0b3256c3ee14
simplified IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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|
633 return StoreAfterTranscoding(resultPublicId, dicom, mode); |
0b3256c3ee14
simplified IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
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|
634 } |
3912
7610af1532c3
prototyping automated transcoding of incoming DICOM files
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|
635 } |
7610af1532c3
prototyping automated transcoding of incoming DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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|
636 } |
7610af1532c3
prototyping automated transcoding of incoming DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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|
637 } |
7610af1532c3
prototyping automated transcoding of incoming DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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|
638 |
7610af1532c3
prototyping automated transcoding of incoming DICOM files
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|
639 |
1146
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optimization for access to attachments
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640 void ServerContext::AnswerAttachment(RestApiOutput& output, |
1700
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New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
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641 const std::string& resourceId, |
1146
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optimization for access to attachments
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642 FileContentType content) |
226
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refactoring to read files
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643 { |
232
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refactoring of attachments
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644 FileInfo attachment; |
1700
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New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
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645 if (!index_.LookupAttachment(attachment, resourceId, content)) |
232
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refactoring of attachments
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646 { |
1700
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New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
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647 throw OrthancException(ErrorCode_UnknownResource); |
236 | 648 } |
226
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refactoring to read files
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649 |
3175
574890d14c92
new metrics: orthanc_store_dicom_duration_ms, orthanc_storage_[create|read|remove]_duration_ms
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650 StorageAccessor accessor(area_, GetMetricsRegistry()); |
1772
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MIME content type can be associated to custom attachments (cf. "UserContentType")
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651 accessor.AnswerFile(output, attachment, GetFileContentMime(content)); |
226
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refactoring to read files
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diff
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|
652 } |
8a26a8e85edf
refactoring to read files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
224
diff
changeset
|
653 |
8a26a8e85edf
refactoring to read files
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224
diff
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|
654 |
1700
f5ddbd9239dd
New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
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655 void ServerContext::ChangeAttachmentCompression(const std::string& resourceId, |
f5ddbd9239dd
New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
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656 FileContentType attachmentType, |
f5ddbd9239dd
New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
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657 CompressionType compression) |
f5ddbd9239dd
New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
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diff
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|
658 { |
f5ddbd9239dd
New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
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659 LOG(INFO) << "Changing compression type for attachment " |
f5ddbd9239dd
New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
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660 << EnumerationToString(attachmentType) |
f5ddbd9239dd
New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
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661 << " of resource " << resourceId << " to " |
f5ddbd9239dd
New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
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662 << compression; |
f5ddbd9239dd
New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
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663 |
f5ddbd9239dd
New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
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|
664 FileInfo attachment; |
f5ddbd9239dd
New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
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|
665 if (!index_.LookupAttachment(attachment, resourceId, attachmentType)) |
f5ddbd9239dd
New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
666 { |
f5ddbd9239dd
New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
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|
667 throw OrthancException(ErrorCode_UnknownResource); |
f5ddbd9239dd
New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
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diff
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|
668 } |
f5ddbd9239dd
New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
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diff
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|
669 |
f5ddbd9239dd
New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
Sebastien Jodogne <s.jodogne@gmail.com>
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|
670 if (attachment.GetCompressionType() == compression) |
f5ddbd9239dd
New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
671 { |
f5ddbd9239dd
New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
Sebastien Jodogne <s.jodogne@gmail.com>
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|
672 // Nothing to do |
f5ddbd9239dd
New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
Sebastien Jodogne <s.jodogne@gmail.com>
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673 return; |
f5ddbd9239dd
New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
Sebastien Jodogne <s.jodogne@gmail.com>
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|
674 } |
f5ddbd9239dd
New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
Sebastien Jodogne <s.jodogne@gmail.com>
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|
675 |
f5ddbd9239dd
New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
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|
676 std::string content; |
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New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
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|
677 |
3175
574890d14c92
new metrics: orthanc_store_dicom_duration_ms, orthanc_storage_[create|read|remove]_duration_ms
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|
678 StorageAccessor accessor(area_, GetMetricsRegistry()); |
1700
f5ddbd9239dd
New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
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679 accessor.Read(content, attachment); |
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New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
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diff
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|
680 |
f5ddbd9239dd
New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
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parents:
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diff
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681 FileInfo modified = accessor.Write(content.empty() ? NULL : content.c_str(), |
f5ddbd9239dd
New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
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682 content.size(), attachmentType, compression, storeMD5_); |
f5ddbd9239dd
New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
683 |
f5ddbd9239dd
New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
684 try |
f5ddbd9239dd
New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
685 { |
f5ddbd9239dd
New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
Sebastien Jodogne <s.jodogne@gmail.com>
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|
686 StoreStatus status = index_.AddAttachment(modified, resourceId); |
f5ddbd9239dd
New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
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diff
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687 if (status != StoreStatus_Success) |
f5ddbd9239dd
New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
688 { |
f5ddbd9239dd
New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
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689 accessor.Remove(modified); |
f5ddbd9239dd
New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
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|
690 throw OrthancException(ErrorCode_Database); |
f5ddbd9239dd
New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
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diff
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|
691 } |
f5ddbd9239dd
New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
692 } |
f5ddbd9239dd
New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
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|
693 catch (OrthancException&) |
f5ddbd9239dd
New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
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diff
changeset
|
694 { |
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New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
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|
695 accessor.Remove(modified); |
f5ddbd9239dd
New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
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|
696 throw; |
f5ddbd9239dd
New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
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diff
changeset
|
697 } |
f5ddbd9239dd
New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
698 } |
f5ddbd9239dd
New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
699 |
f5ddbd9239dd
New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
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diff
changeset
|
700 |
2409
e4045b3c9772
ignore-length argument if retrieving DICOM tags
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2382
diff
changeset
|
701 void ServerContext::ReadDicomAsJsonInternal(std::string& result, |
e4045b3c9772
ignore-length argument if retrieving DICOM tags
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|
702 const std::string& instancePublicId) |
2127 | 703 { |
2128
9329ba17a069
Possibility to DELETE "dicom-as-json" attachments to reconstruct them
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diff
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|
704 FileInfo attachment; |
9329ba17a069
Possibility to DELETE "dicom-as-json" attachments to reconstruct them
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2127
diff
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|
705 if (index_.LookupAttachment(attachment, instancePublicId, FileContentType_DicomAsJson)) |
9329ba17a069
Possibility to DELETE "dicom-as-json" attachments to reconstruct them
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diff
changeset
|
706 { |
9329ba17a069
Possibility to DELETE "dicom-as-json" attachments to reconstruct them
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diff
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|
707 ReadAttachment(result, attachment); |
9329ba17a069
Possibility to DELETE "dicom-as-json" attachments to reconstruct them
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diff
changeset
|
708 } |
2409
e4045b3c9772
ignore-length argument if retrieving DICOM tags
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diff
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|
709 else |
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ignore-length argument if retrieving DICOM tags
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diff
changeset
|
710 { |
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ignore-length argument if retrieving DICOM tags
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|
711 // The "DICOM as JSON" summary is not available from the Orthanc |
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ignore-length argument if retrieving DICOM tags
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|
712 // store (most probably deleted), reconstruct it from the DICOM file |
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ignore-length argument if retrieving DICOM tags
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|
713 std::string dicom; |
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ignore-length argument if retrieving DICOM tags
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|
714 ReadDicom(dicom, instancePublicId); |
2128
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Possibility to DELETE "dicom-as-json" attachments to reconstruct them
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diff
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|
715 |
2409
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ignore-length argument if retrieving DICOM tags
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|
716 LOG(INFO) << "Reconstructing the missing DICOM-as-JSON summary for instance: " |
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ignore-length argument if retrieving DICOM tags
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|
717 << instancePublicId; |
2128
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Possibility to DELETE "dicom-as-json" attachments to reconstruct them
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diff
changeset
|
718 |
2409
e4045b3c9772
ignore-length argument if retrieving DICOM tags
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changeset
|
719 ParsedDicomFile parsed(dicom); |
2128
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Possibility to DELETE "dicom-as-json" attachments to reconstruct them
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diff
changeset
|
720 |
2409
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ignore-length argument if retrieving DICOM tags
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diff
changeset
|
721 Json::Value summary; |
4140
0ddc5297a8ab
centralization of default parameters for JSON/DicomMap conversions from DCMTK
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4129
diff
changeset
|
722 OrthancConfiguration::DefaultDicomDatasetToJson(summary, parsed); |
2409
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ignore-length argument if retrieving DICOM tags
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diff
changeset
|
723 |
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ignore-length argument if retrieving DICOM tags
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changeset
|
724 result = summary.toStyledString(); |
2128
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Possibility to DELETE "dicom-as-json" attachments to reconstruct them
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2127
diff
changeset
|
725 |
2409
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ignore-length argument if retrieving DICOM tags
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diff
changeset
|
726 if (!AddAttachment(instancePublicId, FileContentType_DicomAsJson, |
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ignore-length argument if retrieving DICOM tags
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changeset
|
727 result.c_str(), result.size())) |
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ignore-length argument if retrieving DICOM tags
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diff
changeset
|
728 { |
2956 | 729 throw OrthancException(ErrorCode_InternalError, |
730 "Cannot associate the DICOM-as-JSON summary to instance: " + instancePublicId); | |
2409
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ignore-length argument if retrieving DICOM tags
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diff
changeset
|
731 } |
e4045b3c9772
ignore-length argument if retrieving DICOM tags
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diff
changeset
|
732 } |
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ignore-length argument if retrieving DICOM tags
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diff
changeset
|
733 } |
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ignore-length argument if retrieving DICOM tags
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diff
changeset
|
734 |
2128
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Possibility to DELETE "dicom-as-json" attachments to reconstruct them
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2127
diff
changeset
|
735 |
2409
e4045b3c9772
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736 void ServerContext::ReadDicomAsJson(std::string& result, |
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737 const std::string& instancePublicId, |
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738 const std::set<DicomTag>& ignoreTagLength) |
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739 { |
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740 if (ignoreTagLength.empty()) |
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741 { |
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742 ReadDicomAsJsonInternal(result, instancePublicId); |
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743 } |
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744 else |
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745 { |
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746 Json::Value tmp; |
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747 ReadDicomAsJson(tmp, instancePublicId, ignoreTagLength); |
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748 result = tmp.toStyledString(); |
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749 } |
2127 | 750 } |
751 | |
752 | |
2124 | 753 void ServerContext::ReadDicomAsJson(Json::Value& result, |
2409
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754 const std::string& instancePublicId, |
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755 const std::set<DicomTag>& ignoreTagLength) |
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756 { |
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757 if (ignoreTagLength.empty()) |
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758 { |
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759 std::string tmp; |
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760 ReadDicomAsJsonInternal(tmp, instancePublicId); |
226
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761 |
2409
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762 Json::Reader reader; |
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763 if (!reader.parse(tmp, result)) |
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764 { |
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765 throw OrthancException(ErrorCode_CorruptedFile); |
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766 } |
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767 } |
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768 else |
226
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769 { |
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770 // The "DicomAsJson" attachment might have stored some tags as |
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771 // "too long". We are forced to re-parse the DICOM file. |
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772 std::string dicom; |
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773 ReadDicom(dicom, instancePublicId); |
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774 |
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775 ParsedDicomFile parsed(dicom); |
4140
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776 OrthancConfiguration::DefaultDicomDatasetToJson(result, parsed, ignoreTagLength); |
226
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777 } |
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778 } |
227
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779 |
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780 |
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781 void ServerContext::ReadAttachment(std::string& result, |
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782 const std::string& instancePublicId, |
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|
783 FileContentType content, |
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784 bool uncompressIfNeeded) |
227
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785 { |
232
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786 FileInfo attachment; |
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787 if (!index_.LookupAttachment(attachment, instancePublicId, content)) |
227
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|
788 { |
2956 | 789 throw OrthancException(ErrorCode_InternalError, |
790 "Unable to read attachment " + EnumerationToString(content) + | |
791 " of instance " + instancePublicId); | |
227
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792 } |
1550 | 793 |
3175
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794 assert(attachment.GetContentType() == content); |
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795 |
1550 | 796 if (uncompressIfNeeded) |
797 { | |
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798 ReadAttachment(result, attachment); |
1550 | 799 } |
800 else | |
801 { | |
3175
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802 // Do not uncompress the content of the storage area, return the |
1550 | 803 // raw data |
3175
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804 StorageAccessor accessor(area_, GetMetricsRegistry()); |
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805 accessor.ReadRaw(result, attachment); |
1550 | 806 } |
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807 } |
285
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808 |
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809 |
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810 void ServerContext::ReadAttachment(std::string& result, |
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811 const FileInfo& attachment) |
1778
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812 { |
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813 // This will decompress the attachment |
3175
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814 StorageAccessor accessor(area_, GetMetricsRegistry()); |
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815 accessor.Read(result, attachment); |
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816 } |
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817 |
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818 |
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819 IDynamicObject* ServerContext::DicomCacheProvider::Provide(const std::string& instancePublicId) |
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820 { |
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821 std::string content; |
2124 | 822 context_.ReadDicom(content, instancePublicId); |
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823 return new ParsedDicomFile(content); |
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824 } |
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825 |
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826 |
778
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827 ServerContext::DicomCacheLocker::DicomCacheLocker(ServerContext& that, |
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828 const std::string& instancePublicId) : |
1129
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|
829 that_(that), |
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830 lock_(that_.dicomCacheMutex_) |
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831 { |
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832 #if ENABLE_DICOM_CACHE == 0 |
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|
833 static std::unique_ptr<IDynamicObject> p; |
3836 | 834 p.reset(that_.provider_.Provide(instancePublicId)); |
778
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835 dicom_ = dynamic_cast<ParsedDicomFile*>(p.get()); |
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836 #else |
778
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837 dicom_ = &dynamic_cast<ParsedDicomFile&>(that_.dicomCache_.Access(instancePublicId)); |
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838 #endif |
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839 } |
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840 |
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|
841 |
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|
842 ServerContext::DicomCacheLocker::~DicomCacheLocker() |
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843 { |
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844 } |
304 | 845 |
846 | |
695
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|
847 void ServerContext::SetStoreMD5ForAttachments(bool storeMD5) |
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848 { |
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849 LOG(INFO) << "Storing MD5 for attachments: " << (storeMD5 ? "yes" : "no"); |
1549
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850 storeMD5_ = storeMD5; |
695
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851 } |
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|
852 |
699
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|
853 |
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854 bool ServerContext::AddAttachment(const std::string& resourceId, |
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855 FileContentType attachmentType, |
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856 const void* data, |
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857 size_t size) |
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858 { |
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|
859 LOG(INFO) << "Adding attachment " << EnumerationToString(attachmentType) << " to resource " << resourceId; |
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860 |
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changeset
|
861 // TODO Should we use "gzip" instead? |
e5e975e9b738
refactoring and simplification of StorageAccessor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1548
diff
changeset
|
862 CompressionType compression = (compressionEnabled_ ? CompressionType_ZlibWithSize : CompressionType_None); |
699
2929e17f8447
add attachments to resources
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
697
diff
changeset
|
863 |
3175
574890d14c92
new metrics: orthanc_store_dicom_duration_ms, orthanc_storage_[create|read|remove]_duration_ms
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3174
diff
changeset
|
864 StorageAccessor accessor(area_, GetMetricsRegistry()); |
1549
e5e975e9b738
refactoring and simplification of StorageAccessor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1548
diff
changeset
|
865 FileInfo attachment = accessor.Write(data, size, attachmentType, compression, storeMD5_); |
699
2929e17f8447
add attachments to resources
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
697
diff
changeset
|
866 |
1549
e5e975e9b738
refactoring and simplification of StorageAccessor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1548
diff
changeset
|
867 StoreStatus status = index_.AddAttachment(attachment, resourceId); |
699
2929e17f8447
add attachments to resources
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
697
diff
changeset
|
868 if (status != StoreStatus_Success) |
2929e17f8447
add attachments to resources
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
697
diff
changeset
|
869 { |
1549
e5e975e9b738
refactoring and simplification of StorageAccessor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1548
diff
changeset
|
870 accessor.Remove(attachment); |
699
2929e17f8447
add attachments to resources
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
697
diff
changeset
|
871 return false; |
2929e17f8447
add attachments to resources
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
697
diff
changeset
|
872 } |
2929e17f8447
add attachments to resources
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
697
diff
changeset
|
873 else |
2929e17f8447
add attachments to resources
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
697
diff
changeset
|
874 { |
2929e17f8447
add attachments to resources
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
697
diff
changeset
|
875 return true; |
2929e17f8447
add attachments to resources
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
697
diff
changeset
|
876 } |
2929e17f8447
add attachments to resources
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
697
diff
changeset
|
877 } |
1145
0479d02c6778
Plugins can retrieve the path to Orthanc and to its configuration file
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1134
diff
changeset
|
878 |
0479d02c6778
Plugins can retrieve the path to Orthanc and to its configuration file
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1134
diff
changeset
|
879 |
0479d02c6778
Plugins can retrieve the path to Orthanc and to its configuration file
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1134
diff
changeset
|
880 bool ServerContext::DeleteResource(Json::Value& target, |
0479d02c6778
Plugins can retrieve the path to Orthanc and to its configuration file
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1134
diff
changeset
|
881 const std::string& uuid, |
0479d02c6778
Plugins can retrieve the path to Orthanc and to its configuration file
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1134
diff
changeset
|
882 ResourceType expectedType) |
0479d02c6778
Plugins can retrieve the path to Orthanc and to its configuration file
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1134
diff
changeset
|
883 { |
2507 | 884 if (expectedType == ResourceType_Instance) |
885 { | |
886 // remove the file from the DicomCache | |
887 boost::mutex::scoped_lock lock(dicomCacheMutex_); | |
888 dicomCache_.Invalidate(uuid); | |
889 } | |
890 | |
1145
0479d02c6778
Plugins can retrieve the path to Orthanc and to its configuration file
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1134
diff
changeset
|
891 return index_.DeleteResource(target, uuid, expectedType); |
0479d02c6778
Plugins can retrieve the path to Orthanc and to its configuration file
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1134
diff
changeset
|
892 } |
1189
6b9b02a16e99
NewChildInstance change type
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1165
diff
changeset
|
893 |
6b9b02a16e99
NewChildInstance change type
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1165
diff
changeset
|
894 |
1198 | 895 void ServerContext::SignalChange(const ServerIndexChange& change) |
1189
6b9b02a16e99
NewChildInstance change type
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1165
diff
changeset
|
896 { |
1436
0a3e3be59094
uncoupling of SignalChange for Lua scripts
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1434
diff
changeset
|
897 pendingChanges_.Enqueue(change.Clone()); |
1189
6b9b02a16e99
NewChildInstance change type
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1165
diff
changeset
|
898 } |
1232
f1c01451a8ee
Introspection of plugins, Plugins can extend Orthanc Explorer with custom JavaScript
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1198
diff
changeset
|
899 |
f1c01451a8ee
Introspection of plugins, Plugins can extend Orthanc Explorer with custom JavaScript
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1198
diff
changeset
|
900 |
2136
dd609a99d39a
uniformization of the macro naming
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2135
diff
changeset
|
901 #if ORTHANC_ENABLE_PLUGINS == 1 |
1434
f9cd40166269
refactoring of OrthancPlugins, improvement in ServeFolders
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1433
diff
changeset
|
902 void ServerContext::SetPlugins(OrthancPlugins& plugins) |
1232
f1c01451a8ee
Introspection of plugins, Plugins can extend Orthanc Explorer with custom JavaScript
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1198
diff
changeset
|
903 { |
3947
cf6eb4fc6841
fix issue 179: use a shared mutex to avoid deadlock in python plugins
Alain Mazy <alain@mazy.be>
parents:
3945
diff
changeset
|
904 boost::unique_lock<boost::shared_mutex> lock(listenersMutex_); |
1459 | 905 |
1434
f9cd40166269
refactoring of OrthancPlugins, improvement in ServeFolders
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1433
diff
changeset
|
906 plugins_ = &plugins; |
f9cd40166269
refactoring of OrthancPlugins, improvement in ServeFolders
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1433
diff
changeset
|
907 |
f9cd40166269
refactoring of OrthancPlugins, improvement in ServeFolders
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1433
diff
changeset
|
908 // TODO REFACTOR THIS |
f9cd40166269
refactoring of OrthancPlugins, improvement in ServeFolders
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1433
diff
changeset
|
909 listeners_.clear(); |
2738
3a55b77339ff
fix deadlock in Lua scripts
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2716
diff
changeset
|
910 listeners_.push_back(ServerListener(luaListener_, "Lua")); |
1434
f9cd40166269
refactoring of OrthancPlugins, improvement in ServeFolders
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1433
diff
changeset
|
911 listeners_.push_back(ServerListener(plugins, "plugin")); |
1232
f1c01451a8ee
Introspection of plugins, Plugins can extend Orthanc Explorer with custom JavaScript
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1198
diff
changeset
|
912 } |
f1c01451a8ee
Introspection of plugins, Plugins can extend Orthanc Explorer with custom JavaScript
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1198
diff
changeset
|
913 |
f1c01451a8ee
Introspection of plugins, Plugins can extend Orthanc Explorer with custom JavaScript
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1198
diff
changeset
|
914 |
1434
f9cd40166269
refactoring of OrthancPlugins, improvement in ServeFolders
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1433
diff
changeset
|
915 void ServerContext::ResetPlugins() |
1232
f1c01451a8ee
Introspection of plugins, Plugins can extend Orthanc Explorer with custom JavaScript
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1198
diff
changeset
|
916 { |
3947
cf6eb4fc6841
fix issue 179: use a shared mutex to avoid deadlock in python plugins
Alain Mazy <alain@mazy.be>
parents:
3945
diff
changeset
|
917 boost::unique_lock<boost::shared_mutex> lock(listenersMutex_); |
1459 | 918 |
1434
f9cd40166269
refactoring of OrthancPlugins, improvement in ServeFolders
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1433
diff
changeset
|
919 plugins_ = NULL; |
f9cd40166269
refactoring of OrthancPlugins, improvement in ServeFolders
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1433
diff
changeset
|
920 |
f9cd40166269
refactoring of OrthancPlugins, improvement in ServeFolders
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1433
diff
changeset
|
921 // TODO REFACTOR THIS |
f9cd40166269
refactoring of OrthancPlugins, improvement in ServeFolders
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1433
diff
changeset
|
922 listeners_.clear(); |
2738
3a55b77339ff
fix deadlock in Lua scripts
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2716
diff
changeset
|
923 listeners_.push_back(ServerListener(luaListener_, "Lua")); |
1232
f1c01451a8ee
Introspection of plugins, Plugins can extend Orthanc Explorer with custom JavaScript
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1198
diff
changeset
|
924 } |
f1c01451a8ee
Introspection of plugins, Plugins can extend Orthanc Explorer with custom JavaScript
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1198
diff
changeset
|
925 |
f1c01451a8ee
Introspection of plugins, Plugins can extend Orthanc Explorer with custom JavaScript
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1198
diff
changeset
|
926 |
1434
f9cd40166269
refactoring of OrthancPlugins, improvement in ServeFolders
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1433
diff
changeset
|
927 const OrthancPlugins& ServerContext::GetPlugins() const |
1232
f1c01451a8ee
Introspection of plugins, Plugins can extend Orthanc Explorer with custom JavaScript
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1198
diff
changeset
|
928 { |
f1c01451a8ee
Introspection of plugins, Plugins can extend Orthanc Explorer with custom JavaScript
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1198
diff
changeset
|
929 if (HasPlugins()) |
f1c01451a8ee
Introspection of plugins, Plugins can extend Orthanc Explorer with custom JavaScript
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1198
diff
changeset
|
930 { |
f1c01451a8ee
Introspection of plugins, Plugins can extend Orthanc Explorer with custom JavaScript
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1198
diff
changeset
|
931 return *plugins_; |
f1c01451a8ee
Introspection of plugins, Plugins can extend Orthanc Explorer with custom JavaScript
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1198
diff
changeset
|
932 } |
f1c01451a8ee
Introspection of plugins, Plugins can extend Orthanc Explorer with custom JavaScript
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1198
diff
changeset
|
933 else |
f1c01451a8ee
Introspection of plugins, Plugins can extend Orthanc Explorer with custom JavaScript
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1198
diff
changeset
|
934 { |
f1c01451a8ee
Introspection of plugins, Plugins can extend Orthanc Explorer with custom JavaScript
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1198
diff
changeset
|
935 throw OrthancException(ErrorCode_InternalError); |
f1c01451a8ee
Introspection of plugins, Plugins can extend Orthanc Explorer with custom JavaScript
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1198
diff
changeset
|
936 } |
f1c01451a8ee
Introspection of plugins, Plugins can extend Orthanc Explorer with custom JavaScript
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1198
diff
changeset
|
937 } |
1632
eb8fbcf008b5
fix build with plugins disabled
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1582
diff
changeset
|
938 |
1741
06addfcd1d4c
OrthancStarted and OrthancStopped events in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1701
diff
changeset
|
939 OrthancPlugins& ServerContext::GetPlugins() |
06addfcd1d4c
OrthancStarted and OrthancStopped events in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1701
diff
changeset
|
940 { |
06addfcd1d4c
OrthancStarted and OrthancStopped events in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1701
diff
changeset
|
941 if (HasPlugins()) |
06addfcd1d4c
OrthancStarted and OrthancStopped events in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1701
diff
changeset
|
942 { |
06addfcd1d4c
OrthancStarted and OrthancStopped events in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1701
diff
changeset
|
943 return *plugins_; |
06addfcd1d4c
OrthancStarted and OrthancStopped events in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1701
diff
changeset
|
944 } |
06addfcd1d4c
OrthancStarted and OrthancStopped events in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1701
diff
changeset
|
945 else |
06addfcd1d4c
OrthancStarted and OrthancStopped events in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1701
diff
changeset
|
946 { |
06addfcd1d4c
OrthancStarted and OrthancStopped events in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1701
diff
changeset
|
947 throw OrthancException(ErrorCode_InternalError); |
06addfcd1d4c
OrthancStarted and OrthancStopped events in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1701
diff
changeset
|
948 } |
06addfcd1d4c
OrthancStarted and OrthancStopped events in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1701
diff
changeset
|
949 } |
06addfcd1d4c
OrthancStarted and OrthancStopped events in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1701
diff
changeset
|
950 |
1632
eb8fbcf008b5
fix build with plugins disabled
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1582
diff
changeset
|
951 #endif |
eb8fbcf008b5
fix build with plugins disabled
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1582
diff
changeset
|
952 |
eb8fbcf008b5
fix build with plugins disabled
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1582
diff
changeset
|
953 |
eb8fbcf008b5
fix build with plugins disabled
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1582
diff
changeset
|
954 bool ServerContext::HasPlugins() const |
eb8fbcf008b5
fix build with plugins disabled
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1582
diff
changeset
|
955 { |
2136
dd609a99d39a
uniformization of the macro naming
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2135
diff
changeset
|
956 #if ORTHANC_ENABLE_PLUGINS == 1 |
1632
eb8fbcf008b5
fix build with plugins disabled
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1582
diff
changeset
|
957 return (plugins_ != NULL); |
eb8fbcf008b5
fix build with plugins disabled
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1582
diff
changeset
|
958 #else |
eb8fbcf008b5
fix build with plugins disabled
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1582
diff
changeset
|
959 return false; |
eb8fbcf008b5
fix build with plugins disabled
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1582
diff
changeset
|
960 #endif |
eb8fbcf008b5
fix build with plugins disabled
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1582
diff
changeset
|
961 } |
1757
98abb8d7f905
ServerContext::Apply lookup
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1741
diff
changeset
|
962 |
98abb8d7f905
ServerContext::Apply lookup
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1741
diff
changeset
|
963 |
4196
37310bb1cd30
Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4143
diff
changeset
|
964 void ServerContext::ApplyInternal(ILookupVisitor& visitor, |
37310bb1cd30
Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4143
diff
changeset
|
965 const DatabaseLookup& lookup, |
37310bb1cd30
Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4143
diff
changeset
|
966 ResourceType queryLevel, |
37310bb1cd30
Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4143
diff
changeset
|
967 size_t since, |
37310bb1cd30
Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4143
diff
changeset
|
968 size_t limit) |
37310bb1cd30
Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4143
diff
changeset
|
969 { |
3679
6358923d3ced
C-FIND: forbid wildcard matching on some VRs, ignore main tags below the queried level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3677
diff
changeset
|
970 unsigned int databaseLimit = (queryLevel == ResourceType_Instance ? |
6358923d3ced
C-FIND: forbid wildcard matching on some VRs, ignore main tags below the queried level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3677
diff
changeset
|
971 limitFindInstances_ : limitFindResults_); |
3015
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
972 |
1757
98abb8d7f905
ServerContext::Apply lookup
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1741
diff
changeset
|
973 std::vector<std::string> resources, instances; |
3015
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
974 |
3204
8792867b739a
fix incorrect "too many results"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3175
diff
changeset
|
975 { |
8792867b739a
fix incorrect "too many results"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3175
diff
changeset
|
976 const size_t lookupLimit = (databaseLimit == 0 ? 0 : databaseLimit + 1); |
8792867b739a
fix incorrect "too many results"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3175
diff
changeset
|
977 GetIndex().ApplyLookupResources(resources, &instances, lookup, queryLevel, lookupLimit); |
8792867b739a
fix incorrect "too many results"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3175
diff
changeset
|
978 } |
3025
039a9d262d64
preparing to speed up find in databases
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3021
diff
changeset
|
979 |
3033
5da6d1063d8f
effectively replacing LookupResource by DatabaseLookup in searches
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980 bool complete = (databaseLimit == 0 || |
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981 resources.size() <= databaseLimit); |
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982 |
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DicomMap::FromDicomAsJson
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983 LOG(INFO) << "Number of candidate resources after fast DB filtering on main DICOM tags: " << resources.size(); |
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984 |
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985 /** |
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986 * "resources" contains the Orthanc ID of the resource at level |
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987 * "queryLevel", "instances" contains one the Orthanc ID of one |
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988 * sample instance from this resource. |
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989 **/ |
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990 assert(resources.size() == instances.size()); |
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991 |
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992 size_t countResults = 0; |
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993 size_t skipped = 0; |
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994 |
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995 const bool isDicomAsJsonNeeded = visitor.IsDicomAsJsonNeeded(); |
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996 |
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997 for (size_t i = 0; i < instances.size(); i++) |
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998 { |
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999 // Optimization in Orthanc 1.5.1 - Don't read the full JSON from |
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1000 // the disk if only "main DICOM tags" are to be returned |
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1001 |
3712
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1002 std::unique_ptr<Json::Value> dicomAsJson; |
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1003 |
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1004 bool hasOnlyMainDicomTags; |
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1005 DicomMap dicom; |
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1006 |
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1007 if (findStorageAccessMode_ == FindStorageAccessMode_DatabaseOnly || |
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1008 findStorageAccessMode_ == FindStorageAccessMode_DiskOnAnswer || |
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1009 lookup.HasOnlyMainDicomTags()) |
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1010 { |
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1011 // Case (1): The main DICOM tags, as stored in the database, |
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1012 // are sufficient to look for match |
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1013 |
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1014 DicomMap tmp; |
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1015 if (!GetIndex().GetAllMainDicomTags(tmp, instances[i])) |
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1016 { |
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1017 // The instance has been removed during the execution of the |
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1018 // lookup, ignore it |
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1019 continue; |
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1020 } |
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1021 |
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1022 // New in Orthanc 1.6.0: Only keep the main DICOM tags at the |
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1023 // level of interest for the query |
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1024 switch (queryLevel) |
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1025 { |
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1026 // WARNING: Don't reorder cases below, and don't add "break" |
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1027 case ResourceType_Instance: |
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1028 dicom.MergeMainDicomTags(tmp, ResourceType_Instance); |
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1029 |
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1030 case ResourceType_Series: |
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1031 dicom.MergeMainDicomTags(tmp, ResourceType_Series); |
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1032 |
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1033 case ResourceType_Study: |
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1034 dicom.MergeMainDicomTags(tmp, ResourceType_Study); |
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1035 |
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1036 case ResourceType_Patient: |
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1037 dicom.MergeMainDicomTags(tmp, ResourceType_Patient); |
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1038 break; |
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1039 |
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1040 default: |
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1041 throw OrthancException(ErrorCode_InternalError); |
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1042 } |
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1043 |
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1044 hasOnlyMainDicomTags = true; |
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1045 } |
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1046 else |
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1047 { |
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1048 // Case (2): Need to read the "DICOM-as-JSON" attachment from |
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1049 // the storage area |
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1050 dicomAsJson.reset(new Json::Value); |
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1051 ReadDicomAsJson(*dicomAsJson, instances[i]); |
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1052 |
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1053 dicom.FromDicomAsJson(*dicomAsJson); |
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1054 |
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1055 // This map contains the entire JSON, i.e. more than the main DICOM tags |
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1056 hasOnlyMainDicomTags = false; |
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1057 } |
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1058 |
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1059 if (lookup.IsMatch(dicom)) |
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1060 { |
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1061 if (skipped < since) |
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1062 { |
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1063 skipped++; |
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1064 } |
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1065 else if (limit != 0 && |
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1066 countResults >= limit) |
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1067 { |
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refactoring OrthancFindRequestHandler using LookupResource::IVisitor
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|
1068 // Too many results, don't mark as complete |
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1069 complete = false; |
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1070 break; |
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1071 } |
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1072 else |
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1073 { |
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1074 if ((findStorageAccessMode_ == FindStorageAccessMode_DiskOnLookupAndAnswer || |
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1075 findStorageAccessMode_ == FindStorageAccessMode_DiskOnAnswer) && |
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1076 dicomAsJson.get() == NULL && |
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1077 isDicomAsJsonNeeded) |
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1078 { |
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|
1079 dicomAsJson.reset(new Json::Value); |
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1080 ReadDicomAsJson(*dicomAsJson, instances[i]); |
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1081 } |
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1082 |
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1083 if (hasOnlyMainDicomTags) |
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1084 { |
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1085 // This is Case (1): The variable "dicom" only contains the main DICOM tags |
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1086 visitor.Visit(resources[i], instances[i], dicom, dicomAsJson.get()); |
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1087 } |
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1088 else |
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1089 { |
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1090 // Remove the non-main DICOM tags from "dicom" if Case (2) |
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1091 // was used, for consistency with Case (1) |
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1092 |
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1093 DicomMap mainDicomTags; |
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1094 mainDicomTags.ExtractMainDicomTags(dicom); |
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1095 visitor.Visit(resources[i], instances[i], mainDicomTags, dicomAsJson.get()); |
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1096 } |
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1097 |
3001
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1098 countResults ++; |
1757
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1099 } |
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1100 } |
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1101 } |
3001
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1102 |
3003
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1103 if (complete) |
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1104 { |
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1105 visitor.MarkAsComplete(); |
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1106 } |
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1107 |
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1108 LOG(INFO) << "Number of matching resources: " << countResults; |
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1109 } |
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1110 |
2626 | 1111 |
4196
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1112 |
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1113 namespace |
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1114 { |
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1115 class ModalitiesInStudyVisitor : public ServerContext::ILookupVisitor |
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1116 { |
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1117 private: |
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1118 class Study : public boost::noncopyable |
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1119 { |
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1120 private: |
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1121 std::string orthancId_; |
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1122 std::string instanceId_; |
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1123 DicomMap mainDicomTags_; |
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1124 Json::Value dicomAsJson_; |
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1125 std::set<std::string> modalitiesInStudy_; |
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1126 |
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1127 public: |
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1128 Study(const std::string& instanceId, |
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1129 const DicomMap& seriesTags) : |
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1130 instanceId_(instanceId), |
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1131 dicomAsJson_(Json::nullValue) |
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1132 { |
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1133 { |
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1134 DicomMap tmp; |
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1135 tmp.Assign(seriesTags); |
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1136 tmp.SetValue(DICOM_TAG_SOP_INSTANCE_UID, "dummy", false); |
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1137 DicomInstanceHasher hasher(tmp); |
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1138 orthancId_ = hasher.HashStudy(); |
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1139 } |
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1140 |
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1141 mainDicomTags_.MergeMainDicomTags(seriesTags, ResourceType_Study); |
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1142 mainDicomTags_.MergeMainDicomTags(seriesTags, ResourceType_Patient); |
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1143 AddModality(seriesTags); |
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1144 } |
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1145 |
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1146 void AddModality(const DicomMap& seriesTags) |
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1147 { |
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1148 std::string modality; |
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1149 if (seriesTags.LookupStringValue(modality, DICOM_TAG_MODALITY, false) && |
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1150 !modality.empty()) |
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1151 { |
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1152 modalitiesInStudy_.insert(modality); |
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1153 } |
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1154 } |
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1155 |
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1156 void SetDicomAsJson(const Json::Value& dicomAsJson) |
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1157 { |
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1158 dicomAsJson_ = dicomAsJson; |
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1159 } |
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1160 |
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1161 const std::string& GetOrthancId() const |
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1162 { |
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1163 return orthancId_; |
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1164 } |
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1165 |
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1166 const std::string& GetInstanceId() const |
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1167 { |
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1168 return instanceId_; |
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1169 } |
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1170 |
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1171 const DicomMap& GetMainDicomTags() const |
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1172 { |
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1173 return mainDicomTags_; |
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1174 } |
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1175 |
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1176 const Json::Value* GetDicomAsJson() const |
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1177 { |
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1178 if (dicomAsJson_.type() == Json::nullValue) |
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1179 { |
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1180 return NULL; |
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1181 } |
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1182 else |
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1183 { |
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1184 return &dicomAsJson_; |
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1185 } |
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1186 } |
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1187 }; |
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1188 |
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1189 typedef std::map<std::string, Study*> Studies; |
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1190 |
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1191 bool isDicomAsJsonNeeded_; |
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1192 bool complete_; |
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1193 Studies studies_; |
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1194 |
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1195 public: |
4205 | 1196 explicit ModalitiesInStudyVisitor(bool isDicomAsJsonNeeded) : |
1197 isDicomAsJsonNeeded_(isDicomAsJsonNeeded), | |
1198 complete_(false) | |
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1199 { |
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1200 } |
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1201 |
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1202 ~ModalitiesInStudyVisitor() |
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1203 { |
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1204 for (Studies::const_iterator it = studies_.begin(); it != studies_.end(); ++it) |
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1205 { |
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1206 assert(it->second != NULL); |
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1207 delete it->second; |
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1208 } |
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1209 |
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1210 studies_.clear(); |
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1211 } |
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1212 |
4205 | 1213 virtual bool IsDicomAsJsonNeeded() const ORTHANC_OVERRIDE |
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1214 { |
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1215 return isDicomAsJsonNeeded_; |
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1216 } |
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1217 |
4205 | 1218 virtual void MarkAsComplete() ORTHANC_OVERRIDE |
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1219 { |
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1220 complete_ = true; |
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1221 } |
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1222 |
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1223 virtual void Visit(const std::string& publicId, |
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1224 const std::string& instanceId, |
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1225 const DicomMap& seriesTags, |
4205 | 1226 const Json::Value* dicomAsJson) ORTHANC_OVERRIDE |
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1227 { |
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1228 std::string studyInstanceUid; |
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1229 if (seriesTags.LookupStringValue(studyInstanceUid, DICOM_TAG_STUDY_INSTANCE_UID, false)) |
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1230 { |
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1231 Studies::iterator found = studies_.find(studyInstanceUid); |
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1232 if (found == studies_.end()) |
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1233 { |
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1234 // New study |
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1235 std::unique_ptr<Study> study(new Study(instanceId, seriesTags)); |
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1236 |
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1237 if (dicomAsJson != NULL) |
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1238 { |
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1239 study->SetDicomAsJson(*dicomAsJson); |
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1240 } |
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1241 |
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1242 studies_[studyInstanceUid] = study.release(); |
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1243 } |
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1244 else |
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1245 { |
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1246 // Already existing study |
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1247 found->second->AddModality(seriesTags); |
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1248 } |
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1249 } |
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1250 } |
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1251 |
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1252 void Forward(ILookupVisitor& callerVisitor, |
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1253 size_t since, |
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1254 size_t limit) const |
4205 | 1255 { |
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1256 size_t index = 0; |
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1257 size_t countForwarded = 0; |
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1258 |
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1259 for (Studies::const_iterator it = studies_.begin(); it != studies_.end(); ++it, index++) |
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1260 { |
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1261 if (limit == 0 || |
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1262 (index >= since && |
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1263 index < limit)) |
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1264 { |
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1265 assert(it->second != NULL); |
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1266 const Study& study = *it->second; |
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1267 |
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1268 countForwarded++; |
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1269 callerVisitor.Visit(study.GetOrthancId(), study.GetInstanceId(), |
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1270 study.GetMainDicomTags(), study.GetDicomAsJson()); |
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1271 } |
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1272 } |
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1273 |
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1274 if (countForwarded == studies_.size()) |
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1275 { |
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|
1276 callerVisitor.MarkAsComplete(); |
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|
1277 } |
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Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
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|
1278 } |
37310bb1cd30
Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
Sebastien Jodogne <s.jodogne@gmail.com>
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|
1279 }; |
37310bb1cd30
Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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1280 } |
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Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
Sebastien Jodogne <s.jodogne@gmail.com>
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|
1281 |
37310bb1cd30
Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
Sebastien Jodogne <s.jodogne@gmail.com>
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|
1282 |
37310bb1cd30
Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
1283 void ServerContext::Apply(ILookupVisitor& visitor, |
37310bb1cd30
Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
Sebastien Jodogne <s.jodogne@gmail.com>
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|
1284 const DatabaseLookup& lookup, |
37310bb1cd30
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Sebastien Jodogne <s.jodogne@gmail.com>
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|
1285 ResourceType queryLevel, |
37310bb1cd30
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Sebastien Jodogne <s.jodogne@gmail.com>
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1286 size_t since, |
37310bb1cd30
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Sebastien Jodogne <s.jodogne@gmail.com>
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|
1287 size_t limit) |
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Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
Sebastien Jodogne <s.jodogne@gmail.com>
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|
1288 { |
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Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
Sebastien Jodogne <s.jodogne@gmail.com>
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|
1289 if (queryLevel == ResourceType_Study && |
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Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
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|
1290 lookup.HasTag(DICOM_TAG_MODALITIES_IN_STUDY)) |
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Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
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|
1291 { |
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Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
Sebastien Jodogne <s.jodogne@gmail.com>
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|
1292 // Convert the study-level query, into a series-level query, |
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Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
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diff
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|
1293 // where "ModalitiesInStudy" is replaced by "Modality" |
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Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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1294 DatabaseLookup seriesLookup; |
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Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
1295 |
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Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
1296 for (size_t i = 0; i < lookup.GetConstraintsCount(); i++) |
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Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
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diff
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|
1297 { |
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Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
1298 const DicomTagConstraint& constraint = lookup.GetConstraint(i); |
37310bb1cd30
Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
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diff
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|
1299 if (constraint.GetTag() == DICOM_TAG_MODALITIES_IN_STUDY) |
37310bb1cd30
Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
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|
1300 { |
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Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
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diff
changeset
|
1301 if ((constraint.GetConstraintType() == ConstraintType_Equal && constraint.GetValue().empty()) || |
37310bb1cd30
Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
1302 (constraint.GetConstraintType() == ConstraintType_List && constraint.GetValues().empty())) |
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Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
1303 { |
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Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
1304 // Ignore universal lookup on "ModalitiesInStudy" (0008,0061), |
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Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
Sebastien Jodogne <s.jodogne@gmail.com>
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|
1305 // this should have been handled by the caller |
4218
8e069a7e1c11
validation against orthanc-tests
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4205
diff
changeset
|
1306 ApplyInternal(visitor, lookup, queryLevel, since, limit); |
8e069a7e1c11
validation against orthanc-tests
Sebastien Jodogne <s.jodogne@gmail.com>
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4205
diff
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|
1307 return; |
4196
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Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
Sebastien Jodogne <s.jodogne@gmail.com>
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|
1308 } |
37310bb1cd30
Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
1309 else |
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Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
1310 { |
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Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
1311 DicomTagConstraint modality(constraint); |
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Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1312 modality.SetTag(DICOM_TAG_MODALITY); |
37310bb1cd30
Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
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|
1313 seriesLookup.AddConstraint(modality); |
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Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
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|
1314 } |
37310bb1cd30
Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
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|
1315 } |
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Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
1316 else |
37310bb1cd30
Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
1317 { |
37310bb1cd30
Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
1318 seriesLookup.AddConstraint(constraint); |
37310bb1cd30
Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
1319 } |
37310bb1cd30
Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
1320 } |
37310bb1cd30
Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
1321 |
37310bb1cd30
Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
1322 ModalitiesInStudyVisitor seriesVisitor(visitor.IsDicomAsJsonNeeded()); |
37310bb1cd30
Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
1323 ApplyInternal(seriesVisitor, seriesLookup, ResourceType_Series, 0, 0); |
37310bb1cd30
Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
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|
1324 seriesVisitor.Forward(visitor, since, limit); |
37310bb1cd30
Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
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|
1325 } |
37310bb1cd30
Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1326 else |
37310bb1cd30
Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
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|
1327 { |
37310bb1cd30
Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4143
diff
changeset
|
1328 ApplyInternal(visitor, lookup, queryLevel, since, limit); |
37310bb1cd30
Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1329 } |
37310bb1cd30
Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1330 } |
37310bb1cd30
Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1331 |
37310bb1cd30
Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1332 |
3015
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1333 bool ServerContext::LookupOrReconstructMetadata(std::string& target, |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1334 const std::string& publicId, |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1335 MetadataType metadata) |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1336 { |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1337 // This is a backwards-compatibility function, that can |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1338 // reconstruct metadata that were not generated by an older |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1339 // release of Orthanc |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1340 |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1341 if (metadata == MetadataType_Instance_SopClassUid || |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1342 metadata == MetadataType_Instance_TransferSyntax) |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1343 { |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1344 if (index_.LookupMetadata(target, publicId, metadata)) |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1345 { |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1346 return true; |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1347 } |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1348 else |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1349 { |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1350 // These metadata are mandatory in DICOM instances, and were |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1351 // introduced in Orthanc 1.2.0. The fact that |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1352 // "LookupMetadata()" has failed indicates that this database |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1353 // comes from an older release of Orthanc. |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1354 |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1355 DicomTag tag(0, 0); |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1356 |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1357 switch (metadata) |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1358 { |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1359 case MetadataType_Instance_SopClassUid: |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1360 tag = DICOM_TAG_SOP_CLASS_UID; |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1361 break; |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1362 |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1363 case MetadataType_Instance_TransferSyntax: |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1364 tag = DICOM_TAG_TRANSFER_SYNTAX_UID; |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1365 break; |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1366 |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1367 default: |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1368 throw OrthancException(ErrorCode_InternalError); |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1369 } |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1370 |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1371 Json::Value dicomAsJson; |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1372 ReadDicomAsJson(dicomAsJson, publicId); |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1373 |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1374 DicomMap tags; |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1375 tags.FromDicomAsJson(dicomAsJson); |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1376 |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1377 const DicomValue* value = tags.TestAndGetValue(tag); |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1378 |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1379 if (value != NULL && |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1380 !value->IsNull() && |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1381 !value->IsBinary()) |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1382 { |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1383 target = value->GetContent(); |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1384 |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1385 // Store for reuse |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1386 index_.SetMetadata(publicId, metadata, target); |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1387 return true; |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1388 } |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1389 else |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1390 { |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1391 // Should never happen |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1392 return false; |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1393 } |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1394 } |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1395 } |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1396 else |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1397 { |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1398 // No backward |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1399 return index_.LookupMetadata(target, publicId, metadata); |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1400 } |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1401 } |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1402 |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1403 |
2626 | 1404 void ServerContext::AddChildInstances(SetOfInstancesJob& job, |
1405 const std::string& publicId) | |
1406 { | |
1407 std::list<std::string> instances; | |
1408 GetIndex().GetChildInstances(instances, publicId); | |
1409 | |
1410 job.Reserve(job.GetInstancesCount() + instances.size()); | |
1411 | |
1412 for (std::list<std::string>::const_iterator | |
1413 it = instances.begin(); it != instances.end(); ++it) | |
1414 { | |
1415 job.AddInstance(*it); | |
1416 } | |
1417 } | |
2940
4767d36679ed
refactoring access to Orthanc configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2925
diff
changeset
|
1418 |
4767d36679ed
refactoring access to Orthanc configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2925
diff
changeset
|
1419 |
4767d36679ed
refactoring access to Orthanc configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2925
diff
changeset
|
1420 void ServerContext::SignalUpdatedModalities() |
4767d36679ed
refactoring access to Orthanc configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2925
diff
changeset
|
1421 { |
4767d36679ed
refactoring access to Orthanc configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2925
diff
changeset
|
1422 #if ORTHANC_ENABLE_PLUGINS == 1 |
4767d36679ed
refactoring access to Orthanc configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2925
diff
changeset
|
1423 if (HasPlugins()) |
4767d36679ed
refactoring access to Orthanc configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2925
diff
changeset
|
1424 { |
4767d36679ed
refactoring access to Orthanc configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2925
diff
changeset
|
1425 GetPlugins().SignalUpdatedModalities(); |
4767d36679ed
refactoring access to Orthanc configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2925
diff
changeset
|
1426 } |
4767d36679ed
refactoring access to Orthanc configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2925
diff
changeset
|
1427 #endif |
4767d36679ed
refactoring access to Orthanc configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2925
diff
changeset
|
1428 } |
4767d36679ed
refactoring access to Orthanc configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2925
diff
changeset
|
1429 |
4767d36679ed
refactoring access to Orthanc configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2925
diff
changeset
|
1430 |
4767d36679ed
refactoring access to Orthanc configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2925
diff
changeset
|
1431 void ServerContext::SignalUpdatedPeers() |
4767d36679ed
refactoring access to Orthanc configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2925
diff
changeset
|
1432 { |
4767d36679ed
refactoring access to Orthanc configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2925
diff
changeset
|
1433 #if ORTHANC_ENABLE_PLUGINS == 1 |
4767d36679ed
refactoring access to Orthanc configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2925
diff
changeset
|
1434 if (HasPlugins()) |
4767d36679ed
refactoring access to Orthanc configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2925
diff
changeset
|
1435 { |
4767d36679ed
refactoring access to Orthanc configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2925
diff
changeset
|
1436 GetPlugins().SignalUpdatedPeers(); |
4767d36679ed
refactoring access to Orthanc configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2925
diff
changeset
|
1437 } |
4767d36679ed
refactoring access to Orthanc configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2925
diff
changeset
|
1438 #endif |
4767d36679ed
refactoring access to Orthanc configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2925
diff
changeset
|
1439 } |
3660
f159b731c47d
IStorageCommitmentFactory
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3640
diff
changeset
|
1440 |
f159b731c47d
IStorageCommitmentFactory
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3640
diff
changeset
|
1441 |
f159b731c47d
IStorageCommitmentFactory
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3640
diff
changeset
|
1442 IStorageCommitmentFactory::ILookupHandler* |
f159b731c47d
IStorageCommitmentFactory
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3640
diff
changeset
|
1443 ServerContext::CreateStorageCommitment(const std::string& jobId, |
f159b731c47d
IStorageCommitmentFactory
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3640
diff
changeset
|
1444 const std::string& transactionUid, |
f159b731c47d
IStorageCommitmentFactory
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3640
diff
changeset
|
1445 const std::vector<std::string>& sopClassUids, |
3662
d8371b4302ff
OrthancPluginRegisterStorageCommitmentScpCallback()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3660
diff
changeset
|
1446 const std::vector<std::string>& sopInstanceUids, |
d8371b4302ff
OrthancPluginRegisterStorageCommitmentScpCallback()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3660
diff
changeset
|
1447 const std::string& remoteAet, |
d8371b4302ff
OrthancPluginRegisterStorageCommitmentScpCallback()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3660
diff
changeset
|
1448 const std::string& calledAet) |
3660
f159b731c47d
IStorageCommitmentFactory
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3640
diff
changeset
|
1449 { |
f159b731c47d
IStorageCommitmentFactory
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3640
diff
changeset
|
1450 #if ORTHANC_ENABLE_PLUGINS == 1 |
f159b731c47d
IStorageCommitmentFactory
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3640
diff
changeset
|
1451 if (HasPlugins()) |
f159b731c47d
IStorageCommitmentFactory
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3640
diff
changeset
|
1452 { |
3662
d8371b4302ff
OrthancPluginRegisterStorageCommitmentScpCallback()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3660
diff
changeset
|
1453 return GetPlugins().CreateStorageCommitment( |
d8371b4302ff
OrthancPluginRegisterStorageCommitmentScpCallback()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3660
diff
changeset
|
1454 jobId, transactionUid, sopClassUids, sopInstanceUids, remoteAet, calledAet); |
3660
f159b731c47d
IStorageCommitmentFactory
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3640
diff
changeset
|
1455 } |
f159b731c47d
IStorageCommitmentFactory
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3640
diff
changeset
|
1456 #endif |
f159b731c47d
IStorageCommitmentFactory
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3640
diff
changeset
|
1457 |
f159b731c47d
IStorageCommitmentFactory
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3640
diff
changeset
|
1458 return NULL; |
f159b731c47d
IStorageCommitmentFactory
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3640
diff
changeset
|
1459 } |
3894
8f7ad4989fec
transcoding to uncompressed transfer syntaxes over DICOM protocol is implemented
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3839
diff
changeset
|
1460 |
8f7ad4989fec
transcoding to uncompressed transfer syntaxes over DICOM protocol is implemented
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3839
diff
changeset
|
1461 |
3928
4cdc875510d1
ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3913
diff
changeset
|
1462 ImageAccessor* ServerContext::DecodeDicomFrame(const std::string& publicId, |
4cdc875510d1
ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3913
diff
changeset
|
1463 unsigned int frameIndex) |
4cdc875510d1
ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3913
diff
changeset
|
1464 { |
3931
e6606d3ec892
new configuration option: BuiltinDecoderTranscoderOrder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3930
diff
changeset
|
1465 if (builtinDecoderTranscoderOrder_ == BuiltinDecoderTranscoderOrder_Before) |
e6606d3ec892
new configuration option: BuiltinDecoderTranscoderOrder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3930
diff
changeset
|
1466 { |
e6606d3ec892
new configuration option: BuiltinDecoderTranscoderOrder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3930
diff
changeset
|
1467 // Use Orthanc's built-in decoder, using the cache to speed-up |
e6606d3ec892
new configuration option: BuiltinDecoderTranscoderOrder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3930
diff
changeset
|
1468 // things on multi-frame images |
4265
f9eaf14d3d19
Fix decoding sequence if "BuiltinDecoderTranscoderOrder" is "Before"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4218
diff
changeset
|
1469 |
f9eaf14d3d19
Fix decoding sequence if "BuiltinDecoderTranscoderOrder" is "Before"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4218
diff
changeset
|
1470 std::unique_ptr<ImageAccessor> decoded; |
f9eaf14d3d19
Fix decoding sequence if "BuiltinDecoderTranscoderOrder" is "Before"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4218
diff
changeset
|
1471 try |
f9eaf14d3d19
Fix decoding sequence if "BuiltinDecoderTranscoderOrder" is "Before"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4218
diff
changeset
|
1472 { |
4274 | 1473 ServerContext::DicomCacheLocker locker(*this, publicId); |
4265
f9eaf14d3d19
Fix decoding sequence if "BuiltinDecoderTranscoderOrder" is "Before"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4218
diff
changeset
|
1474 decoded.reset(locker.GetDicom().DecodeFrame(frameIndex)); |
f9eaf14d3d19
Fix decoding sequence if "BuiltinDecoderTranscoderOrder" is "Before"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4218
diff
changeset
|
1475 } |
f9eaf14d3d19
Fix decoding sequence if "BuiltinDecoderTranscoderOrder" is "Before"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4218
diff
changeset
|
1476 catch (OrthancException& e) |
f9eaf14d3d19
Fix decoding sequence if "BuiltinDecoderTranscoderOrder" is "Before"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4218
diff
changeset
|
1477 { |
f9eaf14d3d19
Fix decoding sequence if "BuiltinDecoderTranscoderOrder" is "Before"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4218
diff
changeset
|
1478 } |
f9eaf14d3d19
Fix decoding sequence if "BuiltinDecoderTranscoderOrder" is "Before"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4218
diff
changeset
|
1479 |
3931
e6606d3ec892
new configuration option: BuiltinDecoderTranscoderOrder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3930
diff
changeset
|
1480 if (decoded.get() != NULL) |
e6606d3ec892
new configuration option: BuiltinDecoderTranscoderOrder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3930
diff
changeset
|
1481 { |
e6606d3ec892
new configuration option: BuiltinDecoderTranscoderOrder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3930
diff
changeset
|
1482 return decoded.release(); |
e6606d3ec892
new configuration option: BuiltinDecoderTranscoderOrder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3930
diff
changeset
|
1483 } |
e6606d3ec892
new configuration option: BuiltinDecoderTranscoderOrder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3930
diff
changeset
|
1484 } |
3928
4cdc875510d1
ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3913
diff
changeset
|
1485 |
4cdc875510d1
ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3913
diff
changeset
|
1486 #if ORTHANC_ENABLE_PLUGINS == 1 |
4cdc875510d1
ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3913
diff
changeset
|
1487 if (HasPlugins() && |
4cdc875510d1
ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3913
diff
changeset
|
1488 GetPlugins().HasCustomImageDecoder()) |
4cdc875510d1
ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3913
diff
changeset
|
1489 { |
4cdc875510d1
ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3913
diff
changeset
|
1490 // TODO: Store the raw buffer in the DicomCacheLocker |
4cdc875510d1
ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3913
diff
changeset
|
1491 std::string dicomContent; |
4cdc875510d1
ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3913
diff
changeset
|
1492 ReadDicom(dicomContent, publicId); |
4265
f9eaf14d3d19
Fix decoding sequence if "BuiltinDecoderTranscoderOrder" is "Before"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4218
diff
changeset
|
1493 |
f9eaf14d3d19
Fix decoding sequence if "BuiltinDecoderTranscoderOrder" is "Before"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4218
diff
changeset
|
1494 std::unique_ptr<ImageAccessor> decoded; |
f9eaf14d3d19
Fix decoding sequence if "BuiltinDecoderTranscoderOrder" is "Before"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4218
diff
changeset
|
1495 try |
f9eaf14d3d19
Fix decoding sequence if "BuiltinDecoderTranscoderOrder" is "Before"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4218
diff
changeset
|
1496 { |
f9eaf14d3d19
Fix decoding sequence if "BuiltinDecoderTranscoderOrder" is "Before"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4218
diff
changeset
|
1497 decoded.reset(GetPlugins().Decode(dicomContent.c_str(), dicomContent.size(), frameIndex)); |
f9eaf14d3d19
Fix decoding sequence if "BuiltinDecoderTranscoderOrder" is "Before"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4218
diff
changeset
|
1498 } |
f9eaf14d3d19
Fix decoding sequence if "BuiltinDecoderTranscoderOrder" is "Before"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4218
diff
changeset
|
1499 catch (OrthancException& e) |
f9eaf14d3d19
Fix decoding sequence if "BuiltinDecoderTranscoderOrder" is "Before"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4218
diff
changeset
|
1500 { |
f9eaf14d3d19
Fix decoding sequence if "BuiltinDecoderTranscoderOrder" is "Before"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4218
diff
changeset
|
1501 } |
f9eaf14d3d19
Fix decoding sequence if "BuiltinDecoderTranscoderOrder" is "Before"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4218
diff
changeset
|
1502 |
3928
4cdc875510d1
ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3913
diff
changeset
|
1503 if (decoded.get() != NULL) |
4cdc875510d1
ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3913
diff
changeset
|
1504 { |
4cdc875510d1
ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3913
diff
changeset
|
1505 return decoded.release(); |
4cdc875510d1
ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3913
diff
changeset
|
1506 } |
3931
e6606d3ec892
new configuration option: BuiltinDecoderTranscoderOrder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3930
diff
changeset
|
1507 else if (builtinDecoderTranscoderOrder_ == BuiltinDecoderTranscoderOrder_After) |
3928
4cdc875510d1
ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3913
diff
changeset
|
1508 { |
4cdc875510d1
ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3913
diff
changeset
|
1509 LOG(INFO) << "The installed image decoding plugins cannot handle an image, " |
3930
b99acc213937
transcoder plugins and GDCM transcoding are working
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3928
diff
changeset
|
1510 << "fallback to the built-in DCMTK decoder"; |
3928
4cdc875510d1
ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3913
diff
changeset
|
1511 } |
4cdc875510d1
ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3913
diff
changeset
|
1512 } |
4cdc875510d1
ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3913
diff
changeset
|
1513 #endif |
4cdc875510d1
ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3913
diff
changeset
|
1514 |
3931
e6606d3ec892
new configuration option: BuiltinDecoderTranscoderOrder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3930
diff
changeset
|
1515 if (builtinDecoderTranscoderOrder_ == BuiltinDecoderTranscoderOrder_After) |
3928
4cdc875510d1
ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3913
diff
changeset
|
1516 { |
4cdc875510d1
ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3913
diff
changeset
|
1517 ServerContext::DicomCacheLocker locker(*this, publicId); |
4203
4d42408da117
improving const-correctness in ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4196
diff
changeset
|
1518 return locker.GetDicom().DecodeFrame(frameIndex); |
3928
4cdc875510d1
ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3913
diff
changeset
|
1519 } |
3931
e6606d3ec892
new configuration option: BuiltinDecoderTranscoderOrder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3930
diff
changeset
|
1520 else |
e6606d3ec892
new configuration option: BuiltinDecoderTranscoderOrder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3930
diff
changeset
|
1521 { |
e6606d3ec892
new configuration option: BuiltinDecoderTranscoderOrder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3930
diff
changeset
|
1522 return NULL; // Built-in decoder is disabled |
e6606d3ec892
new configuration option: BuiltinDecoderTranscoderOrder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3930
diff
changeset
|
1523 } |
3928
4cdc875510d1
ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3913
diff
changeset
|
1524 } |
4cdc875510d1
ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3913
diff
changeset
|
1525 |
4cdc875510d1
ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3913
diff
changeset
|
1526 |
4cdc875510d1
ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3913
diff
changeset
|
1527 ImageAccessor* ServerContext::DecodeDicomFrame(const DicomInstanceToStore& dicom, |
4cdc875510d1
ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3913
diff
changeset
|
1528 unsigned int frameIndex) |
4cdc875510d1
ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3913
diff
changeset
|
1529 { |
3931
e6606d3ec892
new configuration option: BuiltinDecoderTranscoderOrder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3930
diff
changeset
|
1530 if (builtinDecoderTranscoderOrder_ == BuiltinDecoderTranscoderOrder_Before) |
e6606d3ec892
new configuration option: BuiltinDecoderTranscoderOrder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3930
diff
changeset
|
1531 { |
4265
f9eaf14d3d19
Fix decoding sequence if "BuiltinDecoderTranscoderOrder" is "Before"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4218
diff
changeset
|
1532 std::unique_ptr<ImageAccessor> decoded; |
f9eaf14d3d19
Fix decoding sequence if "BuiltinDecoderTranscoderOrder" is "Before"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4218
diff
changeset
|
1533 try |
f9eaf14d3d19
Fix decoding sequence if "BuiltinDecoderTranscoderOrder" is "Before"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4218
diff
changeset
|
1534 { |
f9eaf14d3d19
Fix decoding sequence if "BuiltinDecoderTranscoderOrder" is "Before"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4218
diff
changeset
|
1535 decoded.reset(dicom.GetParsedDicomFile().DecodeFrame(frameIndex)); |
f9eaf14d3d19
Fix decoding sequence if "BuiltinDecoderTranscoderOrder" is "Before"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4218
diff
changeset
|
1536 } |
f9eaf14d3d19
Fix decoding sequence if "BuiltinDecoderTranscoderOrder" is "Before"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4218
diff
changeset
|
1537 catch (OrthancException& e) |
f9eaf14d3d19
Fix decoding sequence if "BuiltinDecoderTranscoderOrder" is "Before"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4218
diff
changeset
|
1538 { |
f9eaf14d3d19
Fix decoding sequence if "BuiltinDecoderTranscoderOrder" is "Before"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4218
diff
changeset
|
1539 } |
f9eaf14d3d19
Fix decoding sequence if "BuiltinDecoderTranscoderOrder" is "Before"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4218
diff
changeset
|
1540 |
3931
e6606d3ec892
new configuration option: BuiltinDecoderTranscoderOrder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3930
diff
changeset
|
1541 if (decoded.get() != NULL) |
e6606d3ec892
new configuration option: BuiltinDecoderTranscoderOrder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3930
diff
changeset
|
1542 { |
e6606d3ec892
new configuration option: BuiltinDecoderTranscoderOrder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3930
diff
changeset
|
1543 return decoded.release(); |
e6606d3ec892
new configuration option: BuiltinDecoderTranscoderOrder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3930
diff
changeset
|
1544 } |
e6606d3ec892
new configuration option: BuiltinDecoderTranscoderOrder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3930
diff
changeset
|
1545 } |
3928
4cdc875510d1
ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3913
diff
changeset
|
1546 |
4cdc875510d1
ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3913
diff
changeset
|
1547 #if ORTHANC_ENABLE_PLUGINS == 1 |
4cdc875510d1
ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3913
diff
changeset
|
1548 if (HasPlugins() && |
4cdc875510d1
ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3913
diff
changeset
|
1549 GetPlugins().HasCustomImageDecoder()) |
4cdc875510d1
ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3913
diff
changeset
|
1550 { |
4265
f9eaf14d3d19
Fix decoding sequence if "BuiltinDecoderTranscoderOrder" is "Before"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4218
diff
changeset
|
1551 std::unique_ptr<ImageAccessor> decoded; |
f9eaf14d3d19
Fix decoding sequence if "BuiltinDecoderTranscoderOrder" is "Before"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4218
diff
changeset
|
1552 try |
f9eaf14d3d19
Fix decoding sequence if "BuiltinDecoderTranscoderOrder" is "Before"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4218
diff
changeset
|
1553 { |
f9eaf14d3d19
Fix decoding sequence if "BuiltinDecoderTranscoderOrder" is "Before"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4218
diff
changeset
|
1554 decoded.reset(GetPlugins().Decode(dicom.GetBufferData(), dicom.GetBufferSize(), frameIndex)); |
f9eaf14d3d19
Fix decoding sequence if "BuiltinDecoderTranscoderOrder" is "Before"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4218
diff
changeset
|
1555 } |
f9eaf14d3d19
Fix decoding sequence if "BuiltinDecoderTranscoderOrder" is "Before"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4218
diff
changeset
|
1556 catch (OrthancException& e) |
f9eaf14d3d19
Fix decoding sequence if "BuiltinDecoderTranscoderOrder" is "Before"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4218
diff
changeset
|
1557 { |
f9eaf14d3d19
Fix decoding sequence if "BuiltinDecoderTranscoderOrder" is "Before"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4218
diff
changeset
|
1558 } |
f9eaf14d3d19
Fix decoding sequence if "BuiltinDecoderTranscoderOrder" is "Before"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4218
diff
changeset
|
1559 |
3928
4cdc875510d1
ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3913
diff
changeset
|
1560 if (decoded.get() != NULL) |
4cdc875510d1
ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3913
diff
changeset
|
1561 { |
4cdc875510d1
ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3913
diff
changeset
|
1562 return decoded.release(); |
4cdc875510d1
ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3913
diff
changeset
|
1563 } |
3931
e6606d3ec892
new configuration option: BuiltinDecoderTranscoderOrder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3930
diff
changeset
|
1564 else if (builtinDecoderTranscoderOrder_ == BuiltinDecoderTranscoderOrder_After) |
3928
4cdc875510d1
ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3913
diff
changeset
|
1565 { |
4cdc875510d1
ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3913
diff
changeset
|
1566 LOG(INFO) << "The installed image decoding plugins cannot handle an image, " |
3930
b99acc213937
transcoder plugins and GDCM transcoding are working
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3928
diff
changeset
|
1567 << "fallback to the built-in DCMTK decoder"; |
3928
4cdc875510d1
ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3913
diff
changeset
|
1568 } |
4cdc875510d1
ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3913
diff
changeset
|
1569 } |
4cdc875510d1
ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3913
diff
changeset
|
1570 #endif |
4cdc875510d1
ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3913
diff
changeset
|
1571 |
3931
e6606d3ec892
new configuration option: BuiltinDecoderTranscoderOrder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3930
diff
changeset
|
1572 if (builtinDecoderTranscoderOrder_ == BuiltinDecoderTranscoderOrder_After) |
e6606d3ec892
new configuration option: BuiltinDecoderTranscoderOrder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3930
diff
changeset
|
1573 { |
4203
4d42408da117
improving const-correctness in ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4196
diff
changeset
|
1574 return dicom.GetParsedDicomFile().DecodeFrame(frameIndex); |
3931
e6606d3ec892
new configuration option: BuiltinDecoderTranscoderOrder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3930
diff
changeset
|
1575 } |
e6606d3ec892
new configuration option: BuiltinDecoderTranscoderOrder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3930
diff
changeset
|
1576 else |
e6606d3ec892
new configuration option: BuiltinDecoderTranscoderOrder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3930
diff
changeset
|
1577 { |
e6606d3ec892
new configuration option: BuiltinDecoderTranscoderOrder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3930
diff
changeset
|
1578 return NULL; |
e6606d3ec892
new configuration option: BuiltinDecoderTranscoderOrder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3930
diff
changeset
|
1579 } |
3928
4cdc875510d1
ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3913
diff
changeset
|
1580 } |
4cdc875510d1
ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3913
diff
changeset
|
1581 |
4cdc875510d1
ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3913
diff
changeset
|
1582 |
3980
e42f5445d20d
Fix decoding of DICOM images for plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3951
diff
changeset
|
1583 ImageAccessor* ServerContext::DecodeDicomFrame(const void* dicom, |
e42f5445d20d
Fix decoding of DICOM images for plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3951
diff
changeset
|
1584 size_t size, |
e42f5445d20d
Fix decoding of DICOM images for plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3951
diff
changeset
|
1585 unsigned int frameIndex) |
e42f5445d20d
Fix decoding of DICOM images for plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3951
diff
changeset
|
1586 { |
e42f5445d20d
Fix decoding of DICOM images for plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3951
diff
changeset
|
1587 DicomInstanceToStore instance; |
e42f5445d20d
Fix decoding of DICOM images for plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3951
diff
changeset
|
1588 instance.SetBuffer(dicom, size); |
e42f5445d20d
Fix decoding of DICOM images for plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3951
diff
changeset
|
1589 return DecodeDicomFrame(instance, frameIndex); |
e42f5445d20d
Fix decoding of DICOM images for plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3951
diff
changeset
|
1590 } |
e42f5445d20d
Fix decoding of DICOM images for plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3951
diff
changeset
|
1591 |
e42f5445d20d
Fix decoding of DICOM images for plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3951
diff
changeset
|
1592 |
3894
8f7ad4989fec
transcoding to uncompressed transfer syntaxes over DICOM protocol is implemented
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3839
diff
changeset
|
1593 void ServerContext::StoreWithTranscoding(std::string& sopClassUid, |
8f7ad4989fec
transcoding to uncompressed transfer syntaxes over DICOM protocol is implemented
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3839
diff
changeset
|
1594 std::string& sopInstanceUid, |
8f7ad4989fec
transcoding to uncompressed transfer syntaxes over DICOM protocol is implemented
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3839
diff
changeset
|
1595 DicomStoreUserConnection& connection, |
8f7ad4989fec
transcoding to uncompressed transfer syntaxes over DICOM protocol is implemented
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3839
diff
changeset
|
1596 const std::string& dicom, |
8f7ad4989fec
transcoding to uncompressed transfer syntaxes over DICOM protocol is implemented
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3839
diff
changeset
|
1597 bool hasMoveOriginator, |
8f7ad4989fec
transcoding to uncompressed transfer syntaxes over DICOM protocol is implemented
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3839
diff
changeset
|
1598 const std::string& moveOriginatorAet, |
8f7ad4989fec
transcoding to uncompressed transfer syntaxes over DICOM protocol is implemented
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3839
diff
changeset
|
1599 uint16_t moveOriginatorId) |
8f7ad4989fec
transcoding to uncompressed transfer syntaxes over DICOM protocol is implemented
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3839
diff
changeset
|
1600 { |
8f7ad4989fec
transcoding to uncompressed transfer syntaxes over DICOM protocol is implemented
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3839
diff
changeset
|
1601 const void* data = dicom.empty() ? NULL : dicom.c_str(); |
8f7ad4989fec
transcoding to uncompressed transfer syntaxes over DICOM protocol is implemented
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3839
diff
changeset
|
1602 |
3911
0ef7f4528be2
renamed option TranscodingEnabled to TranscodeDicomProtocol
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3910
diff
changeset
|
1603 if (!transcodeDicomProtocol_ || |
3894
8f7ad4989fec
transcoding to uncompressed transfer syntaxes over DICOM protocol is implemented
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3839
diff
changeset
|
1604 !connection.GetParameters().GetRemoteModality().IsTranscodingAllowed()) |
8f7ad4989fec
transcoding to uncompressed transfer syntaxes over DICOM protocol is implemented
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3839
diff
changeset
|
1605 { |
8f7ad4989fec
transcoding to uncompressed transfer syntaxes over DICOM protocol is implemented
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3839
diff
changeset
|
1606 connection.Store(sopClassUid, sopInstanceUid, data, dicom.size(), |
8f7ad4989fec
transcoding to uncompressed transfer syntaxes over DICOM protocol is implemented
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3839
diff
changeset
|
1607 hasMoveOriginator, moveOriginatorAet, moveOriginatorId); |
8f7ad4989fec
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Sebastien Jodogne <s.jodogne@gmail.com>
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1608 } |
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1609 else |
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Sebastien Jodogne <s.jodogne@gmail.com>
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1610 { |
3930
b99acc213937
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Sebastien Jodogne <s.jodogne@gmail.com>
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|
1611 connection.Transcode(sopClassUid, sopInstanceUid, *this, data, dicom.size(), |
3912
7610af1532c3
prototyping automated transcoding of incoming DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
1612 hasMoveOriginator, moveOriginatorAet, moveOriginatorId); |
3894
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|
1613 } |
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
1614 } |
3930
b99acc213937
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Sebastien Jodogne <s.jodogne@gmail.com>
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|
1615 |
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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|
1616 |
3944
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preparing simplified interface for IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
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|
1617 bool ServerContext::Transcode(DicomImage& target, |
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|
1618 DicomImage& source /* in, "GetParsed()" possibly modified */, |
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Sebastien Jodogne <s.jodogne@gmail.com>
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|
1619 const std::set<DicomTransferSyntax>& allowedSyntaxes, |
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Sebastien Jodogne <s.jodogne@gmail.com>
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|
1620 bool allowNewSopInstanceUid) |
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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|
1621 { |
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diff
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|
1622 if (builtinDecoderTranscoderOrder_ == BuiltinDecoderTranscoderOrder_Before) |
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
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|
1623 { |
3951
5fe8c6d3212e
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
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|
1624 if (dcmtkTranscoder_->Transcode(target, source, allowedSyntaxes, allowNewSopInstanceUid)) |
3944
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Sebastien Jodogne <s.jodogne@gmail.com>
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|
1625 { |
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Sebastien Jodogne <s.jodogne@gmail.com>
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|
1626 return true; |
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Sebastien Jodogne <s.jodogne@gmail.com>
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|
1627 } |
aae045f802f4
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|
1628 } |
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
1629 |
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
1630 #if ORTHANC_ENABLE_PLUGINS == 1 |
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
1631 if (HasPlugins() && |
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
1632 GetPlugins().HasCustomTranscoder()) |
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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|
1633 { |
3951
5fe8c6d3212e
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3947
diff
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|
1634 if (GetPlugins().Transcode(target, source, allowedSyntaxes, allowNewSopInstanceUid)) |
3944
aae045f802f4
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Sebastien Jodogne <s.jodogne@gmail.com>
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|
1635 { |
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
1636 return true; |
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
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|
1637 } |
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
1638 else if (builtinDecoderTranscoderOrder_ == BuiltinDecoderTranscoderOrder_After) |
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Sebastien Jodogne <s.jodogne@gmail.com>
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|
1639 { |
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diff
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|
1640 LOG(INFO) << "The installed transcoding plugins cannot handle an image, " |
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
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|
1641 << "fallback to the built-in DCMTK transcoder"; |
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|
1642 } |
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|
1643 } |
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|
1644 #endif |
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diff
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|
1645 |
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parents:
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diff
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|
1646 if (builtinDecoderTranscoderOrder_ == BuiltinDecoderTranscoderOrder_After) |
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3941
diff
changeset
|
1647 { |
3951
5fe8c6d3212e
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
1648 return dcmtkTranscoder_->Transcode(target, source, allowedSyntaxes, allowNewSopInstanceUid); |
3944
aae045f802f4
preparing simplified interface for IDicomTranscoder
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parents:
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diff
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|
1649 } |
aae045f802f4
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
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|
1650 else |
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diff
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|
1651 { |
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diff
changeset
|
1652 return false; |
aae045f802f4
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diff
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|
1653 } |
aae045f802f4
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diff
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|
1654 } |
4375
208029732d51
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Mark Poscablo <Mark.Poscablo@varian.com>
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|
1655 |
208029732d51
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Mark Poscablo <Mark.Poscablo@varian.com>
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diff
changeset
|
1656 const std::string& ServerContext::GetDeidentifiedQueryContent(const DicomElement &element) const |
208029732d51
New config option "DeidentifyDimseQueryLogs"
Mark Poscablo <Mark.Poscablo@varian.com>
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diff
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|
1657 { |
208029732d51
New config option "DeidentifyDimseQueryLogs"
Mark Poscablo <Mark.Poscablo@varian.com>
parents:
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diff
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|
1658 static const std::string redactedContent = "*** POTENTIAL PHI ***"; |
208029732d51
New config option "DeidentifyDimseQueryLogs"
Mark Poscablo <Mark.Poscablo@varian.com>
parents:
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diff
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|
1659 |
208029732d51
New config option "DeidentifyDimseQueryLogs"
Mark Poscablo <Mark.Poscablo@varian.com>
parents:
4274
diff
changeset
|
1660 const DicomTag& tag = element.GetTag(); |
208029732d51
New config option "DeidentifyDimseQueryLogs"
Mark Poscablo <Mark.Poscablo@varian.com>
parents:
4274
diff
changeset
|
1661 if (deidentifyDimseQueryLogs_ && ( |
208029732d51
New config option "DeidentifyDimseQueryLogs"
Mark Poscablo <Mark.Poscablo@varian.com>
parents:
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diff
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|
1662 logsDeidentifierRules_.IsCleared(tag) || |
208029732d51
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Mark Poscablo <Mark.Poscablo@varian.com>
parents:
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diff
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|
1663 logsDeidentifierRules_.IsRemoved(tag) || |
208029732d51
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Mark Poscablo <Mark.Poscablo@varian.com>
parents:
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diff
changeset
|
1664 logsDeidentifierRules_.IsReplaced(tag))) |
208029732d51
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Mark Poscablo <Mark.Poscablo@varian.com>
parents:
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diff
changeset
|
1665 { |
208029732d51
New config option "DeidentifyDimseQueryLogs"
Mark Poscablo <Mark.Poscablo@varian.com>
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diff
changeset
|
1666 return redactedContent; |
208029732d51
New config option "DeidentifyDimseQueryLogs"
Mark Poscablo <Mark.Poscablo@varian.com>
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|
1667 } |
208029732d51
New config option "DeidentifyDimseQueryLogs"
Mark Poscablo <Mark.Poscablo@varian.com>
parents:
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diff
changeset
|
1668 else |
208029732d51
New config option "DeidentifyDimseQueryLogs"
Mark Poscablo <Mark.Poscablo@varian.com>
parents:
4274
diff
changeset
|
1669 { |
208029732d51
New config option "DeidentifyDimseQueryLogs"
Mark Poscablo <Mark.Poscablo@varian.com>
parents:
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diff
changeset
|
1670 return element.GetValue().GetContent(); |
208029732d51
New config option "DeidentifyDimseQueryLogs"
Mark Poscablo <Mark.Poscablo@varian.com>
parents:
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diff
changeset
|
1671 } |
208029732d51
New config option "DeidentifyDimseQueryLogs"
Mark Poscablo <Mark.Poscablo@varian.com>
parents:
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diff
changeset
|
1672 } |
224 | 1673 } |