Mercurial > hg > orthanc
annotate OrthancServer/FromDcmtkBridge.cpp @ 1400:1c8df4424437
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| author | Sebastien Jodogne <s.jodogne@gmail.com> |
|---|---|
| date | Mon, 01 Jun 2015 14:05:35 +0200 |
| parents | b22ba8c5edbe |
| children | 8e23f16a198d |
| rev | line source |
|---|---|
| 0 | 1 /** |
| 62 | 2 * Orthanc - A Lightweight, RESTful DICOM Store |
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3 * Copyright (C) 2012-2015 Sebastien Jodogne, Medical Physics |
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4 * Department, University Hospital of Liege, Belgium |
| 0 | 5 * |
| 6 * This program is free software: you can redistribute it and/or | |
| 7 * modify it under the terms of the GNU General Public License as | |
| 8 * published by the Free Software Foundation, either version 3 of the | |
| 9 * License, or (at your option) any later version. | |
| 136 | 10 * |
| 11 * In addition, as a special exception, the copyright holders of this | |
| 12 * program give permission to link the code of its release with the | |
| 13 * OpenSSL project's "OpenSSL" library (or with modified versions of it | |
| 14 * that use the same license as the "OpenSSL" library), and distribute | |
| 15 * the linked executables. You must obey the GNU General Public License | |
| 16 * in all respects for all of the code used other than "OpenSSL". If you | |
| 17 * modify file(s) with this exception, you may extend this exception to | |
| 18 * your version of the file(s), but you are not obligated to do so. If | |
| 19 * you do not wish to do so, delete this exception statement from your | |
| 20 * version. If you delete this exception statement from all source files | |
| 21 * in the program, then also delete it here. | |
| 0 | 22 * |
| 23 * This program is distributed in the hope that it will be useful, but | |
| 24 * WITHOUT ANY WARRANTY; without even the implied warranty of | |
| 25 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU | |
| 26 * General Public License for more details. | |
| 27 * | |
| 28 * You should have received a copy of the GNU General Public License | |
| 29 * along with this program. If not, see <http://www.gnu.org/licenses/>. | |
| 30 **/ | |
| 31 | |
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32 |
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33 |
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34 #include "PrecompiledHeadersServer.h" |
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35 |
| 71 | 36 #ifndef NOMINMAX |
| 37 #define NOMINMAX | |
| 38 #endif | |
| 0 | 39 |
| 846 | 40 #include "Internals/DicomImageDecoder.h" |
| 41 | |
| 0 | 42 #include "FromDcmtkBridge.h" |
| 43 #include "ToDcmtkBridge.h" | |
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44 #include "OrthancInitialization.h" |
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45 #include "../Core/Toolbox.h" |
| 62 | 46 #include "../Core/OrthancException.h" |
| 799 | 47 #include "../Core/ImageFormats/PngWriter.h" |
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48 #include "../Core/Uuid.h" |
| 0 | 49 #include "../Core/DicomFormat/DicomString.h" |
| 50 #include "../Core/DicomFormat/DicomNullValue.h" | |
| 79 | 51 #include "../Core/DicomFormat/DicomIntegerPixelAccessor.h" |
| 0 | 52 |
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53 #include <list> |
| 71 | 54 #include <limits> |
| 55 | |
| 0 | 56 #include <boost/lexical_cast.hpp> |
| 57 | |
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58 #include <dcmtk/dcmdata/dcchrstr.h> |
| 0 | 59 #include <dcmtk/dcmdata/dcdicent.h> |
| 60 #include <dcmtk/dcmdata/dcdict.h> | |
| 61 #include <dcmtk/dcmdata/dcfilefo.h> | |
| 62 #include <dcmtk/dcmdata/dcistrmb.h> | |
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63 #include <dcmtk/dcmdata/dcuid.h> |
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64 #include <dcmtk/dcmdata/dcmetinf.h> |
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65 #include <dcmtk/dcmdata/dcdeftag.h> |
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66 |
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67 #include <dcmtk/dcmdata/dcvrae.h> |
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68 #include <dcmtk/dcmdata/dcvras.h> |
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69 #include <dcmtk/dcmdata/dcvrcs.h> |
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70 #include <dcmtk/dcmdata/dcvrda.h> |
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71 #include <dcmtk/dcmdata/dcvrds.h> |
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72 #include <dcmtk/dcmdata/dcvrdt.h> |
| 0 | 73 #include <dcmtk/dcmdata/dcvrfd.h> |
| 74 #include <dcmtk/dcmdata/dcvrfl.h> | |
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75 #include <dcmtk/dcmdata/dcvris.h> |
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76 #include <dcmtk/dcmdata/dcvrlo.h> |
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77 #include <dcmtk/dcmdata/dcvrlt.h> |
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78 #include <dcmtk/dcmdata/dcvrpn.h> |
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79 #include <dcmtk/dcmdata/dcvrsh.h> |
| 0 | 80 #include <dcmtk/dcmdata/dcvrsl.h> |
| 81 #include <dcmtk/dcmdata/dcvrss.h> | |
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82 #include <dcmtk/dcmdata/dcvrst.h> |
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83 #include <dcmtk/dcmdata/dcvrtm.h> |
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84 #include <dcmtk/dcmdata/dcvrui.h> |
| 0 | 85 #include <dcmtk/dcmdata/dcvrul.h> |
| 86 #include <dcmtk/dcmdata/dcvrus.h> | |
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87 #include <dcmtk/dcmdata/dcvrut.h> |
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88 #include <dcmtk/dcmdata/dcpixel.h> |
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89 #include <dcmtk/dcmdata/dcpixseq.h> |
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90 #include <dcmtk/dcmdata/dcpxitem.h> |
| 1131 | 91 #include <dcmtk/dcmdata/dcvrat.h> |
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92 |
| 0 | 93 |
| 2 | 94 #include <boost/math/special_functions/round.hpp> |
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95 #include <glog/logging.h> |
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96 #include <dcmtk/dcmdata/dcostrmb.h> |
| 0 | 97 |
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98 |
| 62 | 99 namespace Orthanc |
| 0 | 100 { |
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101 static inline uint16_t GetCharValue(char c) |
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102 { |
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103 if (c >= '0' && c <= '9') |
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104 return c - '0'; |
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105 else if (c >= 'a' && c <= 'f') |
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106 return c - 'a' + 10; |
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107 else if (c >= 'A' && c <= 'F') |
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108 return c - 'A' + 10; |
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109 else |
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110 return 0; |
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111 } |
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112 |
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113 static inline uint16_t GetTagValue(const char* c) |
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114 { |
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115 return ((GetCharValue(c[0]) << 12) + |
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116 (GetCharValue(c[1]) << 8) + |
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117 (GetCharValue(c[2]) << 4) + |
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118 GetCharValue(c[3])); |
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119 } |
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120 |
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121 |
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122 Encoding FromDcmtkBridge::DetectEncoding(DcmDataset& dataset) |
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123 { |
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124 // By default, Latin1 encoding is assumed |
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125 std::string s = Configuration::GetGlobalStringParameter("DefaultEncoding", ""); |
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126 Encoding encoding = s.empty() ? Encoding_Latin1 : StringToEncoding(s.c_str()); |
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127 |
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128 OFString tmp; |
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129 if (dataset.findAndGetOFString(DCM_SpecificCharacterSet, tmp).good()) |
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130 { |
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131 std::string characterSet = Toolbox::StripSpaces(std::string(tmp.c_str())); |
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132 |
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133 if (characterSet.empty()) |
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134 { |
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135 // Empty specific character set tag: Use the default encoding |
| 1087 | 136 } |
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137 else if (GetDicomEncoding(encoding, characterSet.c_str())) |
| 1087 | 138 { |
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139 // The specific character set is supported by the Orthanc core |
| 1087 | 140 } |
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141 else |
| 1087 | 142 { |
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143 LOG(WARNING) << "Value of Specific Character Set (0008,0005) is not supported: " << characterSet |
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144 << ", fallback to ASCII (remove all special characters)"; |
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145 encoding = Encoding_Ascii; |
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146 } |
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147 } |
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148 else |
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149 { |
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150 // No specific character set tag: Use the default encoding |
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151 } |
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152 |
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153 return encoding; |
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154 } |
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155 |
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156 |
| 0 | 157 void FromDcmtkBridge::Convert(DicomMap& target, DcmDataset& dataset) |
| 158 { | |
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159 Encoding encoding = DetectEncoding(dataset); |
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160 |
| 0 | 161 target.Clear(); |
| 162 for (unsigned long i = 0; i < dataset.card(); i++) | |
| 163 { | |
| 164 DcmElement* element = dataset.getElement(i); | |
| 165 if (element && element->isLeaf()) | |
| 166 { | |
| 167 target.SetValue(element->getTag().getGTag(), | |
| 168 element->getTag().getETag(), | |
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169 ConvertLeafElement(*element, encoding)); |
| 0 | 170 } |
| 171 } | |
| 172 } | |
| 173 | |
| 174 | |
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175 DicomTag FromDcmtkBridge::Convert(const DcmTag& tag) |
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176 { |
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177 return DicomTag(tag.getGTag(), tag.getETag()); |
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178 } |
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179 |
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180 |
| 0 | 181 DicomTag FromDcmtkBridge::GetTag(const DcmElement& element) |
| 182 { | |
| 183 return DicomTag(element.getGTag(), element.getETag()); | |
| 184 } | |
| 185 | |
| 186 | |
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187 bool FromDcmtkBridge::IsPrivateTag(DcmTag& tag) |
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188 { |
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189 #if 1 |
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190 DcmTagKey tmp(tag.getGTag(), tag.getETag()); |
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191 return tmp.isPrivate(); |
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192 #else |
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193 // Implementation for Orthanc versions <= 0.8.5 |
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194 return (tag.getPrivateCreator() != NULL || |
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195 !strcmp("PrivateCreator", tag.getTagName())); // TODO - This may change with future versions of DCMTK |
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196 #endif |
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197 } |
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198 |
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199 |
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200 bool FromDcmtkBridge::IsPrivateTag(const DicomTag& tag) |
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201 { |
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202 #if 1 |
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203 DcmTagKey tmp(tag.GetGroup(), tag.GetElement()); |
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204 return tmp.isPrivate(); |
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205 #else |
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206 // Implementation for Orthanc versions <= 0.8.5 |
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207 DcmTag tmp(tag.GetGroup(), tag.GetElement()); |
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208 return IsPrivateTag(tmp); |
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209 #endif |
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210 } |
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211 |
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212 |
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213 DicomValue* FromDcmtkBridge::ConvertLeafElement(DcmElement& element, |
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214 Encoding encoding) |
| 0 | 215 { |
| 216 if (!element.isLeaf()) | |
| 217 { | |
| 62 | 218 throw OrthancException("Only applicable to leaf elements"); |
| 0 | 219 } |
| 220 | |
| 221 if (element.isaString()) | |
| 222 { | |
| 223 char *c; | |
| 224 if (element.getString(c).good() && | |
| 225 c != NULL) | |
| 226 { | |
| 227 std::string s(c); | |
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228 std::string utf8 = Toolbox::ConvertToUtf8(s, encoding); |
| 0 | 229 return new DicomString(utf8); |
| 230 } | |
| 231 else | |
| 232 { | |
| 233 return new DicomNullValue; | |
| 234 } | |
| 235 } | |
| 236 | |
| 237 try | |
| 238 { | |
| 239 // http://support.dcmtk.org/docs/dcvr_8h-source.html | |
| 240 switch (element.getVR()) | |
| 241 { | |
| 242 | |
| 243 /** | |
| 244 * TODO. | |
| 245 **/ | |
|
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246 |
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247 case EVR_OB: // other byte |
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248 case EVR_OF: // other float |
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249 case EVR_OW: // other word |
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250 case EVR_UN: // unknown value representation |
| 1131 | 251 return new DicomNullValue; |
|
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252 |
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253 /** |
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254 * String types, should never happen at this point because of |
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255 * "element.isaString()". |
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256 **/ |
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257 |
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258 case EVR_DS: // decimal string |
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259 case EVR_IS: // integer string |
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260 case EVR_AS: // age string |
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261 case EVR_DA: // date string |
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262 case EVR_DT: // date time string |
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263 case EVR_TM: // time string |
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264 case EVR_AE: // application entity title |
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265 case EVR_CS: // code string |
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266 case EVR_SH: // short string |
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267 case EVR_LO: // long string |
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268 case EVR_ST: // short text |
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269 case EVR_LT: // long text |
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270 case EVR_UT: // unlimited text |
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271 case EVR_PN: // person name |
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272 case EVR_UI: // unique identifier |
| 1131 | 273 return new DicomNullValue; |
| 0 | 274 |
| 275 | |
|
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276 /** |
| 1131 | 277 * Numberic types |
|
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278 **/ |
| 0 | 279 |
|
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280 case EVR_SL: // signed long |
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281 { |
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282 Sint32 f; |
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283 if (dynamic_cast<DcmSignedLong&>(element).getSint32(f).good()) |
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284 return new DicomString(boost::lexical_cast<std::string>(f)); |
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285 else |
| 1131 | 286 return new DicomNullValue; |
|
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287 } |
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288 |
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289 case EVR_SS: // signed short |
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290 { |
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291 Sint16 f; |
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292 if (dynamic_cast<DcmSignedShort&>(element).getSint16(f).good()) |
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293 return new DicomString(boost::lexical_cast<std::string>(f)); |
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294 else |
| 1131 | 295 return new DicomNullValue; |
|
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296 } |
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297 |
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298 case EVR_UL: // unsigned long |
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299 { |
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300 Uint32 f; |
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301 if (dynamic_cast<DcmUnsignedLong&>(element).getUint32(f).good()) |
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302 return new DicomString(boost::lexical_cast<std::string>(f)); |
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303 else |
| 1131 | 304 return new DicomNullValue; |
|
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305 } |
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306 |
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307 case EVR_US: // unsigned short |
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308 { |
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309 Uint16 f; |
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310 if (dynamic_cast<DcmUnsignedShort&>(element).getUint16(f).good()) |
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311 return new DicomString(boost::lexical_cast<std::string>(f)); |
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312 else |
| 1131 | 313 return new DicomNullValue; |
|
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314 } |
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315 |
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316 case EVR_FL: // float single-precision |
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317 { |
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318 Float32 f; |
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319 if (dynamic_cast<DcmFloatingPointSingle&>(element).getFloat32(f).good()) |
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320 return new DicomString(boost::lexical_cast<std::string>(f)); |
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321 else |
| 1131 | 322 return new DicomNullValue; |
|
302
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323 } |
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324 |
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325 case EVR_FD: // float double-precision |
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326 { |
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327 Float64 f; |
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328 if (dynamic_cast<DcmFloatingPointDouble&>(element).getFloat64(f).good()) |
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329 return new DicomString(boost::lexical_cast<std::string>(f)); |
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330 else |
| 1131 | 331 return new DicomNullValue; |
| 332 } | |
| 333 | |
| 334 | |
| 335 /** | |
| 336 * Attribute tag. | |
| 337 **/ | |
| 338 | |
| 339 case EVR_AT: | |
| 340 { | |
| 1147 | 341 DcmTagKey tag; |
| 342 if (dynamic_cast<DcmAttributeTag&>(element).getTagVal(tag, 0).good()) | |
| 343 { | |
| 344 DicomTag t(tag.getGroup(), tag.getElement()); | |
| 345 return new DicomString(t.Format()); | |
| 346 } | |
| 1131 | 347 else |
| 1147 | 348 { |
| 1131 | 349 return new DicomNullValue; |
| 1147 | 350 } |
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351 } |
| 0 | 352 |
| 353 | |
| 354 /** | |
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355 * Sequence types, should never occur at this point because of |
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356 * "element.isLeaf()". |
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357 **/ |
| 0 | 358 |
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359 case EVR_SQ: // sequence of items |
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360 return new DicomNullValue; |
| 0 | 361 |
| 362 | |
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363 /** |
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364 * Internal to DCMTK. |
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365 **/ |
| 0 | 366 |
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367 case EVR_ox: // OB or OW depending on context |
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368 case EVR_xs: // SS or US depending on context |
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369 case EVR_lt: // US, SS or OW depending on context, used for LUT Data (thus the name) |
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370 case EVR_na: // na="not applicable", for data which has no VR |
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371 case EVR_up: // up="unsigned pointer", used internally for DICOMDIR suppor |
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372 case EVR_item: // used internally for items |
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373 case EVR_metainfo: // used internally for meta info datasets |
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374 case EVR_dataset: // used internally for datasets |
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375 case EVR_fileFormat: // used internally for DICOM files |
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376 case EVR_dicomDir: // used internally for DICOMDIR objects |
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377 case EVR_dirRecord: // used internally for DICOMDIR records |
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378 case EVR_pixelSQ: // used internally for pixel sequences in a compressed image |
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379 case EVR_pixelItem: // used internally for pixel items in a compressed image |
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380 case EVR_UNKNOWN: // used internally for elements with unknown VR (encoded with 4-byte length field in explicit VR) |
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381 case EVR_PixelData: // used internally for uncompressed pixeld data |
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382 case EVR_OverlayData: // used internally for overlay data |
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383 case EVR_UNKNOWN2B: // used internally for elements with unknown VR with 2-byte length field in explicit VR |
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384 return new DicomNullValue; |
| 0 | 385 |
| 386 | |
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387 /** |
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388 * Default case. |
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389 **/ |
| 0 | 390 |
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391 default: |
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392 return new DicomNullValue; |
| 0 | 393 } |
| 394 } | |
| 395 catch (boost::bad_lexical_cast) | |
| 396 { | |
| 397 return new DicomNullValue; | |
| 398 } | |
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399 catch (std::bad_cast) |
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400 { |
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401 return new DicomNullValue; |
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402 } |
| 0 | 403 } |
| 404 | |
| 405 | |
| 406 static void StoreElement(Json::Value& target, | |
| 407 DcmElement& element, | |
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408 unsigned int maxStringLength, |
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409 Encoding encoding); |
| 0 | 410 |
| 411 static void StoreItem(Json::Value& target, | |
| 412 DcmItem& item, | |
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413 unsigned int maxStringLength, |
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414 Encoding encoding) |
| 0 | 415 { |
| 416 target = Json::Value(Json::objectValue); | |
| 417 | |
| 418 for (unsigned long i = 0; i < item.card(); i++) | |
| 419 { | |
| 420 DcmElement* element = item.getElement(i); | |
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421 StoreElement(target, *element, maxStringLength, encoding); |
| 0 | 422 } |
| 423 } | |
| 424 | |
| 425 | |
| 426 static void StoreElement(Json::Value& target, | |
| 427 DcmElement& element, | |
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428 unsigned int maxStringLength, |
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429 Encoding encoding) |
| 0 | 430 { |
| 431 assert(target.type() == Json::objectValue); | |
| 432 | |
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433 DicomTag tag(FromDcmtkBridge::GetTag(element)); |
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434 const std::string formattedTag = tag.Format(); |
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435 |
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436 #if 0 |
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437 const std::string tagName = FromDcmtkBridge::GetName(tag); |
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438 #else |
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439 // This version of the code gives access to the name of the private tags |
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440 DcmTag tagbis(element.getTag()); |
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441 const std::string tagName(tagbis.getTagName()); |
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442 #endif |
| 0 | 443 |
| 444 if (element.isLeaf()) | |
| 445 { | |
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446 Json::Value value(Json::objectValue); |
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447 value["Name"] = tagName; |
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448 |
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449 if (tagbis.getPrivateCreator() != NULL) |
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450 { |
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451 value["PrivateCreator"] = tagbis.getPrivateCreator(); |
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452 } |
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453 |
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454 std::auto_ptr<DicomValue> v(FromDcmtkBridge::ConvertLeafElement(element, encoding)); |
| 0 | 455 if (v->IsNull()) |
| 456 { | |
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457 value["Type"] = "Null"; |
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458 value["Value"] = Json::nullValue; |
| 0 | 459 } |
| 460 else | |
| 461 { | |
| 462 std::string s = v->AsString(); | |
| 463 if (maxStringLength == 0 || | |
| 464 s.size() <= maxStringLength) | |
| 465 { | |
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466 value["Type"] = "String"; |
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467 value["Value"] = s; |
| 0 | 468 } |
| 469 else | |
| 470 { | |
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471 value["Type"] = "TooLong"; |
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472 value["Value"] = Json::nullValue; |
| 0 | 473 } |
| 474 } | |
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475 |
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476 target[formattedTag] = value; |
| 0 | 477 } |
| 478 else | |
| 479 { | |
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480 Json::Value children(Json::arrayValue); |
| 0 | 481 |
| 482 // "All subclasses of DcmElement except for DcmSequenceOfItems | |
| 483 // are leaf nodes, while DcmSequenceOfItems, DcmItem, DcmDataset | |
| 484 // etc. are not." The following cast is thus OK. | |
| 485 DcmSequenceOfItems& sequence = dynamic_cast<DcmSequenceOfItems&>(element); | |
| 486 | |
| 487 for (unsigned long i = 0; i < sequence.card(); i++) | |
| 488 { | |
| 489 DcmItem* child = sequence.getItem(i); | |
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490 Json::Value& v = children.append(Json::objectValue); |
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491 StoreItem(v, *child, maxStringLength, encoding); |
| 0 | 492 } |
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493 |
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494 target[formattedTag]["Name"] = tagName; |
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495 target[formattedTag]["Type"] = "Sequence"; |
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496 target[formattedTag]["Value"] = children; |
| 0 | 497 } |
| 498 } | |
| 499 | |
| 500 | |
| 501 void FromDcmtkBridge::ToJson(Json::Value& root, | |
| 502 DcmDataset& dataset, | |
| 503 unsigned int maxStringLength) | |
| 504 { | |
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505 StoreItem(root, dataset, maxStringLength, DetectEncoding(dataset)); |
| 0 | 506 } |
| 507 | |
| 508 | |
| 509 | |
| 510 void FromDcmtkBridge::ToJson(Json::Value& target, | |
| 511 const std::string& path, | |
| 512 unsigned int maxStringLength) | |
| 513 { | |
| 514 DcmFileFormat dicom; | |
| 515 if (!dicom.loadFile(path.c_str()).good()) | |
| 516 { | |
| 62 | 517 throw OrthancException(ErrorCode_BadFileFormat); |
| 0 | 518 } |
| 519 else | |
| 520 { | |
| 521 FromDcmtkBridge::ToJson(target, *dicom.getDataset(), maxStringLength); | |
| 522 } | |
| 523 } | |
| 524 | |
| 525 | |
| 526 | |
| 527 std::string FromDcmtkBridge::GetName(const DicomTag& t) | |
| 528 { | |
| 106 | 529 // Some patches for important tags because of different DICOM |
| 530 // dictionaries between DCMTK versions | |
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531 std::string n = t.GetMainTagsName(); |
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532 if (n.size() != 0) |
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533 { |
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534 return n; |
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535 } |
| 106 | 536 // End of patches |
| 537 | |
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538 #if 0 |
| 0 | 539 DcmTagKey tag(t.GetGroup(), t.GetElement()); |
| 540 const DcmDataDictionary& dict = dcmDataDict.rdlock(); | |
| 541 const DcmDictEntry* entry = dict.findEntry(tag, NULL); | |
| 542 | |
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543 std::string s(DcmTag_ERROR_TagName); |
| 0 | 544 if (entry != NULL) |
| 545 { | |
| 546 s = std::string(entry->getTagName()); | |
| 547 } | |
| 548 | |
| 549 dcmDataDict.unlock(); | |
| 550 return s; | |
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551 #else |
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552 DcmTag tag(t.GetGroup(), t.GetElement()); |
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553 const char* name = tag.getTagName(); |
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554 if (name == NULL) |
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555 { |
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556 return DcmTag_ERROR_TagName; |
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557 } |
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558 else |
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559 { |
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560 return std::string(name); |
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561 } |
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562 #endif |
| 0 | 563 } |
| 564 | |
| 565 | |
| 304 | 566 DicomTag FromDcmtkBridge::ParseTag(const char* name) |
| 0 | 567 { |
| 304 | 568 if (strlen(name) == 9 && |
| 569 isxdigit(name[0]) && | |
| 570 isxdigit(name[1]) && | |
| 571 isxdigit(name[2]) && | |
| 572 isxdigit(name[3]) && | |
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573 (name[4] == '-' || name[4] == ',') && |
| 304 | 574 isxdigit(name[5]) && |
| 575 isxdigit(name[6]) && | |
| 576 isxdigit(name[7]) && | |
| 577 isxdigit(name[8])) | |
| 578 { | |
| 579 uint16_t group = GetTagValue(name); | |
| 580 uint16_t element = GetTagValue(name + 5); | |
| 581 return DicomTag(group, element); | |
| 582 } | |
| 583 | |
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584 #if 0 |
| 0 | 585 const DcmDataDictionary& dict = dcmDataDict.rdlock(); |
| 586 const DcmDictEntry* entry = dict.findEntry(name); | |
| 587 | |
| 588 if (entry == NULL) | |
| 589 { | |
| 590 dcmDataDict.unlock(); | |
| 62 | 591 throw OrthancException("Unknown DICOM tag"); |
| 0 | 592 } |
| 593 else | |
| 594 { | |
| 595 DcmTagKey key = entry->getKey(); | |
| 596 DicomTag tag(key.getGroup(), key.getElement()); | |
| 597 dcmDataDict.unlock(); | |
| 598 return tag; | |
| 599 } | |
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600 #else |
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601 DcmTag tag; |
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602 if (DcmTag::findTagFromName(name, tag).good()) |
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603 { |
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604 return DicomTag(tag.getGTag(), tag.getETag()); |
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605 } |
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606 else |
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607 { |
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608 throw OrthancException("Unknown DICOM tag"); |
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609 } |
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610 #endif |
| 0 | 611 } |
| 612 | |
| 613 | |
| 614 void FromDcmtkBridge::Print(FILE* fp, const DicomMap& m) | |
| 615 { | |
| 616 for (DicomMap::Map::const_iterator | |
| 656 | 617 it = m.map_.begin(); it != m.map_.end(); ++it) |
| 0 | 618 { |
| 619 DicomTag t = it->first; | |
| 620 std::string s = it->second->AsString(); | |
| 319 | 621 fprintf(fp, "0x%04x 0x%04x (%s) [%s]\n", t.GetGroup(), t.GetElement(), GetName(t).c_str(), s.c_str()); |
| 0 | 622 } |
| 623 } | |
| 624 | |
| 625 | |
| 626 void FromDcmtkBridge::ToJson(Json::Value& result, | |
| 1368 | 627 const DicomMap& values, |
| 628 bool simplify) | |
| 0 | 629 { |
| 630 if (result.type() != Json::objectValue) | |
| 631 { | |
| 62 | 632 throw OrthancException(ErrorCode_BadParameterType); |
| 0 | 633 } |
| 634 | |
| 635 result.clear(); | |
| 636 | |
| 637 for (DicomMap::Map::const_iterator | |
| 656 | 638 it = values.map_.begin(); it != values.map_.end(); ++it) |
| 0 | 639 { |
| 1368 | 640 if (simplify) |
| 641 { | |
| 642 result[GetName(it->first)] = it->second->AsString(); | |
| 643 } | |
| 644 else | |
| 645 { | |
| 646 Json::Value value = Json::objectValue; | |
| 647 | |
| 648 value["Name"] = GetName(it->first); | |
| 649 | |
| 650 if (it->second->IsNull()) | |
| 651 { | |
| 652 value["Type"] = "Null"; | |
| 653 value["Value"] = Json::nullValue; | |
| 654 } | |
| 655 else | |
| 656 { | |
| 657 value["Type"] = "String"; | |
| 658 value["Value"] = it->second->AsString(); | |
| 659 } | |
| 660 | |
| 661 result[it->first.Format()] = value; | |
| 662 } | |
| 0 | 663 } |
| 664 } | |
| 176 | 665 |
| 666 | |
| 788 | 667 std::string FromDcmtkBridge::GenerateUniqueIdentifier(ResourceType level) |
| 176 | 668 { |
| 669 char uid[100]; | |
| 670 | |
| 671 switch (level) | |
| 672 { | |
| 788 | 673 case ResourceType_Patient: |
| 311 | 674 // The "PatientID" field is of type LO (Long String), 64 |
| 675 // Bytes Maximum. An UUID is of length 36, thus it can be used | |
| 676 // as a random PatientID. | |
| 677 return Toolbox::GenerateUuid(); | |
|
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678 |
| 788 | 679 case ResourceType_Instance: |
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680 return dcmGenerateUniqueIdentifier(uid, SITE_INSTANCE_UID_ROOT); |
| 176 | 681 |
| 788 | 682 case ResourceType_Series: |
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683 return dcmGenerateUniqueIdentifier(uid, SITE_SERIES_UID_ROOT); |
| 176 | 684 |
| 788 | 685 case ResourceType_Study: |
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686 return dcmGenerateUniqueIdentifier(uid, SITE_STUDY_UID_ROOT); |
| 176 | 687 |
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688 default: |
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689 throw OrthancException(ErrorCode_ParameterOutOfRange); |
| 176 | 690 } |
| 691 } | |
| 692 | |
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693 bool FromDcmtkBridge::SaveToMemoryBuffer(std::string& buffer, |
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694 DcmDataset& dataSet) |
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695 { |
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696 // Determine the transfer syntax which shall be used to write the |
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697 // information to the file. We always switch to the Little Endian |
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698 // syntax, with explicit length. |
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699 |
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700 // http://support.dcmtk.org/docs/dcxfer_8h-source.html |
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701 |
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702 |
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703 /** |
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704 * Note that up to Orthanc 0.7.1 (inclusive), the |
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705 * "EXS_LittleEndianExplicit" was always used to save the DICOM |
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706 * dataset into memory. We now keep the original transfer syntax |
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707 * (if available). |
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708 **/ |
|
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709 E_TransferSyntax xfer = dataSet.getOriginalXfer(); |
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710 if (xfer == EXS_Unknown) |
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711 { |
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712 // No information about the original transfer syntax: This is |
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713 // most probably a DICOM dataset that was read from memory. |
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714 xfer = EXS_LittleEndianExplicit; |
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715 } |
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716 |
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717 E_EncodingType encodingType = /*opt_sequenceType*/ EET_ExplicitLength; |
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718 |
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719 // Create the meta-header information |
|
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720 DcmFileFormat ff(&dataSet); |
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721 ff.validateMetaInfo(xfer); |
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722 ff.removeInvalidGroups(); |
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723 |
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724 // Create a memory buffer with the proper size |
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725 uint32_t s = ff.calcElementLength(xfer, encodingType); |
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726 buffer.resize(s); |
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727 DcmOutputBufferStream ob(&buffer[0], s); |
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728 |
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729 // Fill the memory buffer with the meta-header and the dataset |
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730 ff.transferInit(); |
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731 OFCondition c = ff.write(ob, xfer, encodingType, NULL, |
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732 /*opt_groupLength*/ EGL_recalcGL, |
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733 /*opt_paddingType*/ EPD_withoutPadding); |
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734 ff.transferEnd(); |
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735 |
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736 // Handle errors |
|
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737 if (c.good()) |
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738 { |
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739 return true; |
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740 } |
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741 else |
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742 { |
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743 buffer.clear(); |
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744 return false; |
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745 } |
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746 } |
| 1360 | 747 |
| 748 | |
| 749 bool FromDcmtkBridge::IsPNValueRepresentation(const DicomTag& tag) | |
| 750 { | |
| 751 DcmTag t(tag.GetGroup(), tag.GetElement()); | |
| 752 return t.getEVR() == EVR_PN; | |
| 753 } | |
| 754 | |
| 0 | 755 } |