Mercurial > hg > orthanc
annotate OrthancServer/FromDcmtkBridge.cpp @ 1930:1c147c3c3121
fix static builds
author | Sebastien Jodogne <s.jodogne@gmail.com> |
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date | Mon, 21 Mar 2016 14:37:58 +0100 |
parents | cda5b0ab4ce5 |
children | 72a2fd7fed8b |
rev | line source |
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0 | 1 /** |
62 | 2 * Orthanc - A Lightweight, RESTful DICOM Store |
1900 | 3 * Copyright (C) 2012-2016 Sebastien Jodogne, Medical Physics |
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4 * Department, University Hospital of Liege, Belgium |
0 | 5 * |
6 * This program is free software: you can redistribute it and/or | |
7 * modify it under the terms of the GNU General Public License as | |
8 * published by the Free Software Foundation, either version 3 of the | |
9 * License, or (at your option) any later version. | |
136 | 10 * |
11 * In addition, as a special exception, the copyright holders of this | |
12 * program give permission to link the code of its release with the | |
13 * OpenSSL project's "OpenSSL" library (or with modified versions of it | |
14 * that use the same license as the "OpenSSL" library), and distribute | |
15 * the linked executables. You must obey the GNU General Public License | |
16 * in all respects for all of the code used other than "OpenSSL". If you | |
17 * modify file(s) with this exception, you may extend this exception to | |
18 * your version of the file(s), but you are not obligated to do so. If | |
19 * you do not wish to do so, delete this exception statement from your | |
20 * version. If you delete this exception statement from all source files | |
21 * in the program, then also delete it here. | |
0 | 22 * |
23 * This program is distributed in the hope that it will be useful, but | |
24 * WITHOUT ANY WARRANTY; without even the implied warranty of | |
25 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU | |
26 * General Public License for more details. | |
27 * | |
28 * You should have received a copy of the GNU General Public License | |
29 * along with this program. If not, see <http://www.gnu.org/licenses/>. | |
30 **/ | |
31 | |
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32 |
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33 #include "PrecompiledHeadersServer.h" |
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34 |
71 | 35 #ifndef NOMINMAX |
36 #define NOMINMAX | |
37 #endif | |
0 | 38 |
39 #include "FromDcmtkBridge.h" | |
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40 #include "../Core/Logging.h" |
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41 #include "../Core/Toolbox.h" |
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42 #include "../Core/Uuid.h" |
62 | 43 #include "../Core/OrthancException.h" |
0 | 44 |
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45 #include <list> |
71 | 46 #include <limits> |
47 | |
0 | 48 #include <boost/lexical_cast.hpp> |
1656 | 49 #include <boost/filesystem.hpp> |
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50 #include <boost/algorithm/string/predicate.hpp> |
0 | 51 |
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52 #include <dcmtk/dcmdata/dcdeftag.h> |
0 | 53 #include <dcmtk/dcmdata/dcdicent.h> |
54 #include <dcmtk/dcmdata/dcdict.h> | |
55 #include <dcmtk/dcmdata/dcfilefo.h> | |
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56 #include <dcmtk/dcmdata/dcostrmb.h> |
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57 #include <dcmtk/dcmdata/dcpixel.h> |
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58 #include <dcmtk/dcmdata/dcuid.h> |
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59 |
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60 #include <dcmtk/dcmdata/dcvrae.h> |
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61 #include <dcmtk/dcmdata/dcvras.h> |
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62 #include <dcmtk/dcmdata/dcvrat.h> |
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63 #include <dcmtk/dcmdata/dcvrcs.h> |
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64 #include <dcmtk/dcmdata/dcvrda.h> |
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65 #include <dcmtk/dcmdata/dcvrds.h> |
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66 #include <dcmtk/dcmdata/dcvrdt.h> |
0 | 67 #include <dcmtk/dcmdata/dcvrfd.h> |
68 #include <dcmtk/dcmdata/dcvrfl.h> | |
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69 #include <dcmtk/dcmdata/dcvris.h> |
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70 #include <dcmtk/dcmdata/dcvrlo.h> |
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71 #include <dcmtk/dcmdata/dcvrlt.h> |
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72 #include <dcmtk/dcmdata/dcvrpn.h> |
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73 #include <dcmtk/dcmdata/dcvrsh.h> |
0 | 74 #include <dcmtk/dcmdata/dcvrsl.h> |
75 #include <dcmtk/dcmdata/dcvrss.h> | |
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76 #include <dcmtk/dcmdata/dcvrst.h> |
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77 #include <dcmtk/dcmdata/dcvrtm.h> |
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78 #include <dcmtk/dcmdata/dcvrui.h> |
0 | 79 #include <dcmtk/dcmdata/dcvrul.h> |
80 #include <dcmtk/dcmdata/dcvrus.h> | |
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81 #include <dcmtk/dcmdata/dcvrut.h> |
0 | 82 |
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83 |
1930 | 84 #if DCMTK_USE_EMBEDDED_DICTIONARIES == 1 |
85 #include <EmbeddedResources.h> | |
86 #endif | |
87 | |
88 | |
62 | 89 namespace Orthanc |
0 | 90 { |
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91 static inline uint16_t GetCharValue(char c) |
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92 { |
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93 if (c >= '0' && c <= '9') |
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94 return c - '0'; |
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95 else if (c >= 'a' && c <= 'f') |
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96 return c - 'a' + 10; |
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97 else if (c >= 'A' && c <= 'F') |
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98 return c - 'A' + 10; |
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99 else |
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100 return 0; |
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101 } |
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102 |
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103 static inline uint16_t GetTagValue(const char* c) |
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104 { |
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105 return ((GetCharValue(c[0]) << 12) + |
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106 (GetCharValue(c[1]) << 8) + |
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107 (GetCharValue(c[2]) << 4) + |
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108 GetCharValue(c[3])); |
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109 } |
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110 |
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111 |
1656 | 112 #if DCMTK_USE_EMBEDDED_DICTIONARIES == 1 |
113 static void LoadEmbeddedDictionary(DcmDataDictionary& dictionary, | |
114 EmbeddedResources::FileResourceId resource) | |
115 { | |
116 Toolbox::TemporaryFile tmp; | |
117 | |
118 FILE* fp = fopen(tmp.GetPath().c_str(), "wb"); | |
119 fwrite(EmbeddedResources::GetFileResourceBuffer(resource), | |
120 EmbeddedResources::GetFileResourceSize(resource), 1, fp); | |
121 fclose(fp); | |
122 | |
123 if (!dictionary.loadDictionary(tmp.GetPath().c_str())) | |
124 { | |
125 throw OrthancException(ErrorCode_InternalError); | |
126 } | |
127 } | |
128 | |
129 #else | |
130 static void LoadExternalDictionary(DcmDataDictionary& dictionary, | |
131 const std::string& directory, | |
132 const std::string& filename) | |
133 { | |
134 boost::filesystem::path p = directory; | |
135 p = p / filename; | |
136 | |
137 LOG(WARNING) << "Loading the external DICOM dictionary " << p; | |
138 | |
139 if (!dictionary.loadDictionary(p.string().c_str())) | |
140 { | |
141 throw OrthancException(ErrorCode_InternalError); | |
142 } | |
143 } | |
144 | |
145 #endif | |
146 | |
147 | |
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148 namespace |
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149 { |
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150 class DictionaryLocker |
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151 { |
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152 private: |
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153 DcmDataDictionary& dictionary_; |
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154 |
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155 public: |
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156 DictionaryLocker() : dictionary_(dcmDataDict.wrlock()) |
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157 { |
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158 } |
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159 |
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160 ~DictionaryLocker() |
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161 { |
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162 dcmDataDict.unlock(); |
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163 } |
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164 |
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165 DcmDataDictionary& operator*() |
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166 { |
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167 return dictionary_; |
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168 } |
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169 |
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170 DcmDataDictionary* operator->() |
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171 { |
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172 return &dictionary_; |
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173 } |
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174 }; |
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175 } |
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176 |
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177 |
1656 | 178 void FromDcmtkBridge::InitializeDictionary() |
179 { | |
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180 { |
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181 DictionaryLocker locker; |
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182 |
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183 locker->clear(); |
1656 | 184 |
185 #if DCMTK_USE_EMBEDDED_DICTIONARIES == 1 | |
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186 LOG(WARNING) << "Loading the embedded dictionaries"; |
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187 /** |
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188 * Do not load DICONDE dictionary, it breaks the other tags. The |
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189 * command "strace storescu 2>&1 |grep dic" shows that DICONDE |
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190 * dictionary is not loaded by storescu. |
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191 **/ |
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192 //LoadEmbeddedDictionary(*locker, EmbeddedResources::DICTIONARY_DICONDE); |
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194 LoadEmbeddedDictionary(*locker, EmbeddedResources::DICTIONARY_DICOM); |
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195 LoadEmbeddedDictionary(*locker, EmbeddedResources::DICTIONARY_PRIVATE); |
1656 | 196 |
197 #elif defined(__linux) || defined(__FreeBSD_kernel__) | |
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198 std::string path = DCMTK_DICTIONARY_DIR; |
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200 const char* env = std::getenv(DCM_DICT_ENVIRONMENT_VARIABLE); |
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201 if (env != NULL) |
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202 { |
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203 path = std::string(env); |
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204 } |
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206 LoadExternalDictionary(*locker, path, "dicom.dic"); |
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207 LoadExternalDictionary(*locker, path, "private.dic"); |
1656 | 208 |
209 #else | |
210 #error Support your platform here | |
211 #endif | |
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212 } |
1656 | 213 |
214 /* make sure data dictionary is loaded */ | |
215 if (!dcmDataDict.isDictionaryLoaded()) | |
216 { | |
217 LOG(ERROR) << "No DICOM dictionary loaded, check environment variable: " << DCM_DICT_ENVIRONMENT_VARIABLE; | |
218 throw OrthancException(ErrorCode_InternalError); | |
219 } | |
220 | |
221 { | |
222 // Test the dictionary with a simple DICOM tag | |
223 DcmTag key(0x0010, 0x1030); // This is PatientWeight | |
224 if (key.getEVR() != EVR_DS) | |
225 { | |
226 LOG(ERROR) << "The DICOM dictionary has not been correctly read"; | |
227 throw OrthancException(ErrorCode_InternalError); | |
228 } | |
229 } | |
230 } | |
231 | |
232 | |
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233 void FromDcmtkBridge::RegisterDictionaryTag(const DicomTag& tag, |
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234 const DcmEVR& vr, |
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235 const std::string& name, |
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236 unsigned int minMultiplicity, |
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237 unsigned int maxMultiplicity) |
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238 { |
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239 if (minMultiplicity < 1) |
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240 { |
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241 throw OrthancException(ErrorCode_ParameterOutOfRange); |
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242 } |
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243 |
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244 bool arbitrary = false; |
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245 if (maxMultiplicity == 0) |
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246 { |
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247 maxMultiplicity = DcmVariableVM; |
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248 arbitrary = true; |
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249 } |
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250 else if (maxMultiplicity < minMultiplicity) |
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251 { |
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252 throw OrthancException(ErrorCode_ParameterOutOfRange); |
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253 } |
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254 |
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255 LOG(INFO) << "Registering tag in dictionary: " << tag << " " << (DcmVR(vr).getValidVRName()) << " " |
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256 << name << " (multiplicity: " << minMultiplicity << "-" |
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257 << (arbitrary ? "n" : boost::lexical_cast<std::string>(maxMultiplicity)) << ")"; |
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258 |
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259 std::auto_ptr<DcmDictEntry> entry(new DcmDictEntry(tag.GetGroup(), |
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260 tag.GetElement(), |
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261 vr, name.c_str(), |
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262 static_cast<int>(minMultiplicity), |
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263 static_cast<int>(maxMultiplicity), |
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264 NULL /* version */, |
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265 OFTrue /* doCopyString */, |
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266 NULL /* private creator */)); |
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267 |
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268 entry->setGroupRangeRestriction(DcmDictRange_Unspecified); |
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269 entry->setElementRangeRestriction(DcmDictRange_Unspecified); |
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270 |
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271 { |
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272 DictionaryLocker locker; |
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273 locker->addEntry(entry.release()); |
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274 } |
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275 } |
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276 |
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277 |
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278 Encoding FromDcmtkBridge::DetectEncoding(DcmDataset& dataset, |
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279 Encoding defaultEncoding) |
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280 { |
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281 Encoding encoding = defaultEncoding; |
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282 |
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283 OFString tmp; |
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284 if (dataset.findAndGetOFString(DCM_SpecificCharacterSet, tmp).good()) |
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285 { |
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286 std::string characterSet = Toolbox::StripSpaces(std::string(tmp.c_str())); |
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287 |
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288 if (characterSet.empty()) |
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289 { |
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290 // Empty specific character set tag: Use the default encoding |
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292 else if (GetDicomEncoding(encoding, characterSet.c_str())) |
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294 // The specific character set is supported by the Orthanc core |
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296 else |
1087 | 297 { |
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298 LOG(WARNING) << "Value of Specific Character Set (0008,0005) is not supported: " << characterSet |
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299 << ", fallback to ASCII (remove all special characters)"; |
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300 encoding = Encoding_Ascii; |
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301 } |
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302 } |
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303 else |
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304 { |
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305 // No specific character set tag: Use the default encoding |
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306 } |
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307 |
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308 return encoding; |
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309 } |
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310 |
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311 |
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312 void FromDcmtkBridge::Convert(DicomMap& target, |
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313 DcmDataset& dataset, |
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314 unsigned int maxStringLength, |
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315 Encoding defaultEncoding) |
0 | 316 { |
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317 Encoding encoding = DetectEncoding(dataset, defaultEncoding); |
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318 |
0 | 319 target.Clear(); |
320 for (unsigned long i = 0; i < dataset.card(); i++) | |
321 { | |
322 DcmElement* element = dataset.getElement(i); | |
323 if (element && element->isLeaf()) | |
324 { | |
325 target.SetValue(element->getTag().getGTag(), | |
326 element->getTag().getETag(), | |
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327 ConvertLeafElement(*element, DicomToJsonFlags_Default, maxStringLength, encoding)); |
0 | 328 } |
329 } | |
330 } | |
331 | |
332 | |
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333 DicomTag FromDcmtkBridge::Convert(const DcmTag& tag) |
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334 { |
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335 return DicomTag(tag.getGTag(), tag.getETag()); |
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336 } |
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337 |
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338 |
0 | 339 DicomTag FromDcmtkBridge::GetTag(const DcmElement& element) |
340 { | |
341 return DicomTag(element.getGTag(), element.getETag()); | |
342 } | |
343 | |
344 | |
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345 DicomValue* FromDcmtkBridge::ConvertLeafElement(DcmElement& element, |
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346 DicomToJsonFlags flags, |
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347 unsigned int maxStringLength, |
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348 Encoding encoding) |
0 | 349 { |
350 if (!element.isLeaf()) | |
351 { | |
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352 // This function is only applicable to leaf elements |
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353 throw OrthancException(ErrorCode_BadParameterType); |
0 | 354 } |
355 | |
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356 char *c = NULL; |
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357 if (element.isaString() && |
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358 element.getString(c).good()) |
0 | 359 { |
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360 if (c == NULL) // This case corresponds to the empty string |
0 | 361 { |
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362 return new DicomValue("", false); |
0 | 363 } |
364 else | |
365 { | |
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366 std::string s(c); |
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367 std::string utf8 = Toolbox::ConvertToUtf8(s, encoding); |
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368 |
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369 if (maxStringLength != 0 && |
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370 utf8.size() > maxStringLength) |
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371 { |
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372 return new DicomValue; // Create a NULL value |
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373 } |
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374 else |
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375 { |
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376 return new DicomValue(utf8, false); |
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377 } |
0 | 378 } |
379 } | |
380 | |
381 try | |
382 { | |
383 // http://support.dcmtk.org/docs/dcvr_8h-source.html | |
384 switch (element.getVR()) | |
385 { | |
386 | |
387 /** | |
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388 * Deal with binary data (including PixelData). |
0 | 389 **/ |
306
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390 |
302
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391 case EVR_OB: // other byte |
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392 case EVR_OF: // other float |
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393 case EVR_OW: // other word |
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394 case EVR_UN: // unknown value representation |
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395 case EVR_ox: // OB or OW depending on context |
306
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396 case EVR_DS: // decimal string |
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397 case EVR_IS: // integer string |
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398 case EVR_AS: // age string |
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399 case EVR_DA: // date string |
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400 case EVR_DT: // date time string |
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401 case EVR_TM: // time string |
302
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402 case EVR_AE: // application entity title |
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403 case EVR_CS: // code string |
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404 case EVR_SH: // short string |
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405 case EVR_LO: // long string |
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406 case EVR_ST: // short text |
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407 case EVR_LT: // long text |
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408 case EVR_UT: // unlimited text |
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409 case EVR_PN: // person name |
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410 case EVR_UI: // unique identifier |
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411 case EVR_UNKNOWN: // used internally for elements with unknown VR (encoded with 4-byte length field in explicit VR) |
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412 case EVR_UNKNOWN2B: // used internally for elements with unknown VR with 2-byte length field in explicit VR |
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413 { |
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414 if (!(flags & DicomToJsonFlags_ConvertBinaryToNull)) |
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415 { |
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416 Uint8* data = NULL; |
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417 if (element.getUint8Array(data) == EC_Normal) |
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418 { |
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419 return new DicomValue(reinterpret_cast<const char*>(data), element.getLength(), true); |
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420 } |
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421 } |
0 | 422 |
1818
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423 return new DicomValue; |
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424 } |
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425 |
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|
426 /** |
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427 * Numberic types |
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428 **/ |
0 | 429 |
302
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430 case EVR_SL: // signed long |
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431 { |
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432 Sint32 f; |
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433 if (dynamic_cast<DcmSignedLong&>(element).getSint32(f).good()) |
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434 return new DicomValue(boost::lexical_cast<std::string>(f), false); |
302
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435 else |
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436 return new DicomValue; |
302
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437 } |
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438 |
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439 case EVR_SS: // signed short |
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440 { |
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441 Sint16 f; |
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442 if (dynamic_cast<DcmSignedShort&>(element).getSint16(f).good()) |
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443 return new DicomValue(boost::lexical_cast<std::string>(f), false); |
302
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444 else |
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445 return new DicomValue; |
302
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446 } |
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447 |
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448 case EVR_UL: // unsigned long |
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449 { |
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450 Uint32 f; |
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451 if (dynamic_cast<DcmUnsignedLong&>(element).getUint32(f).good()) |
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452 return new DicomValue(boost::lexical_cast<std::string>(f), false); |
302
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453 else |
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454 return new DicomValue; |
302
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455 } |
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456 |
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457 case EVR_US: // unsigned short |
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458 { |
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459 Uint16 f; |
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460 if (dynamic_cast<DcmUnsignedShort&>(element).getUint16(f).good()) |
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461 return new DicomValue(boost::lexical_cast<std::string>(f), false); |
302
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462 else |
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463 return new DicomValue; |
302
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464 } |
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465 |
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466 case EVR_FL: // float single-precision |
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467 { |
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468 Float32 f; |
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469 if (dynamic_cast<DcmFloatingPointSingle&>(element).getFloat32(f).good()) |
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470 return new DicomValue(boost::lexical_cast<std::string>(f), false); |
302
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471 else |
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472 return new DicomValue; |
302
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473 } |
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474 |
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475 case EVR_FD: // float double-precision |
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476 { |
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477 Float64 f; |
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478 if (dynamic_cast<DcmFloatingPointDouble&>(element).getFloat64(f).good()) |
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479 return new DicomValue(boost::lexical_cast<std::string>(f), false); |
302
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480 else |
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481 return new DicomValue; |
1131 | 482 } |
483 | |
484 | |
485 /** | |
486 * Attribute tag. | |
487 **/ | |
488 | |
489 case EVR_AT: | |
490 { | |
1147 | 491 DcmTagKey tag; |
492 if (dynamic_cast<DcmAttributeTag&>(element).getTagVal(tag, 0).good()) | |
493 { | |
494 DicomTag t(tag.getGroup(), tag.getElement()); | |
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495 return new DicomValue(t.Format(), false); |
1147 | 496 } |
1131 | 497 else |
1147 | 498 { |
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499 return new DicomValue; |
1147 | 500 } |
302
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501 } |
0 | 502 |
503 | |
504 /** | |
302
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505 * Sequence types, should never occur at this point because of |
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506 * "element.isLeaf()". |
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507 **/ |
0 | 508 |
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509 case EVR_SQ: // sequence of items |
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510 return new DicomValue; |
0 | 511 |
512 | |
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513 /** |
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514 * Internal to DCMTK. |
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515 **/ |
0 | 516 |
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517 case EVR_xs: // SS or US depending on context |
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518 case EVR_lt: // US, SS or OW depending on context, used for LUT Data (thus the name) |
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519 case EVR_na: // na="not applicable", for data which has no VR |
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520 case EVR_up: // up="unsigned pointer", used internally for DICOMDIR suppor |
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521 case EVR_item: // used internally for items |
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522 case EVR_metainfo: // used internally for meta info datasets |
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523 case EVR_dataset: // used internally for datasets |
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524 case EVR_fileFormat: // used internally for DICOM files |
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525 case EVR_dicomDir: // used internally for DICOMDIR objects |
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526 case EVR_dirRecord: // used internally for DICOMDIR records |
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527 case EVR_pixelSQ: // used internally for pixel sequences in a compressed image |
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528 case EVR_pixelItem: // used internally for pixel items in a compressed image |
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529 case EVR_PixelData: // used internally for uncompressed pixeld data |
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530 case EVR_OverlayData: // used internally for overlay data |
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531 return new DicomValue; |
0 | 532 |
533 | |
302
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534 /** |
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535 * Default case. |
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536 **/ |
0 | 537 |
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538 default: |
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539 return new DicomValue; |
0 | 540 } |
541 } | |
542 catch (boost::bad_lexical_cast) | |
543 { | |
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544 return new DicomValue; |
0 | 545 } |
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546 catch (std::bad_cast) |
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547 { |
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548 return new DicomValue; |
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549 } |
0 | 550 } |
551 | |
552 | |
1687 | 553 static Json::Value& PrepareNode(Json::Value& parent, |
554 DcmElement& element, | |
555 DicomToJsonFormat format) | |
0 | 556 { |
1687 | 557 assert(parent.type() == Json::objectValue); |
0 | 558 |
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559 DicomTag tag(FromDcmtkBridge::GetTag(element)); |
305
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560 const std::string formattedTag = tag.Format(); |
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561 |
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562 if (format == DicomToJsonFormat_Short) |
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563 { |
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564 parent[formattedTag] = Json::nullValue; |
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565 return parent[formattedTag]; |
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566 } |
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567 |
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568 // This code gives access to the name of the private tags |
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569 DcmTag tagbis(element.getTag()); |
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570 const std::string tagName(tagbis.getTagName()); |
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571 |
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572 switch (format) |
0 | 573 { |
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574 case DicomToJsonFormat_Human: |
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575 parent[tagName] = Json::nullValue; |
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576 return parent[tagName]; |
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577 |
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578 case DicomToJsonFormat_Full: |
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579 { |
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580 parent[formattedTag] = Json::objectValue; |
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581 Json::Value& node = parent[formattedTag]; |
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582 |
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583 if (element.isLeaf()) |
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584 { |
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585 node["Name"] = tagName; |
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586 |
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587 if (tagbis.getPrivateCreator() != NULL) |
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588 { |
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589 node["PrivateCreator"] = tagbis.getPrivateCreator(); |
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590 } |
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591 |
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592 return node; |
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593 } |
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594 else |
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595 { |
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596 node["Name"] = tagName; |
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597 node["Type"] = "Sequence"; |
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598 node["Value"] = Json::nullValue; |
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599 return node["Value"]; |
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600 } |
306
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601 } |
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602 |
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603 default: |
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604 throw OrthancException(ErrorCode_ParameterOutOfRange); |
1687 | 605 } |
606 } | |
607 | |
608 | |
609 static void LeafValueToJson(Json::Value& target, | |
610 const DicomValue& value, | |
611 DicomToJsonFormat format, | |
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612 DicomToJsonFlags flags, |
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613 unsigned int maxStringLength) |
1687 | 614 { |
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615 Json::Value* targetValue = NULL; |
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616 Json::Value* targetType = NULL; |
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617 |
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618 switch (format) |
1687 | 619 { |
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620 case DicomToJsonFormat_Short: |
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621 case DicomToJsonFormat_Human: |
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622 { |
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623 assert(target.type() == Json::nullValue); |
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624 targetValue = ⌖ |
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625 break; |
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626 } |
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627 |
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628 case DicomToJsonFormat_Full: |
0 | 629 { |
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630 assert(target.type() == Json::objectValue); |
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631 target["Value"] = Json::nullValue; |
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632 target["Type"] = Json::nullValue; |
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633 targetType = &target["Type"]; |
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634 targetValue = &target["Value"]; |
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635 break; |
0 | 636 } |
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637 |
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638 default: |
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639 throw OrthancException(ErrorCode_ParameterOutOfRange); |
1687 | 640 } |
1738
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DicomToJsonFlags_IncludeBinary
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|
641 |
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642 assert(targetValue != NULL); |
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643 assert(targetValue->type() == Json::nullValue); |
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|
644 assert(targetType == NULL || targetType->type() == Json::nullValue); |
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diff
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|
645 |
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|
646 if (value.IsNull()) |
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|
647 { |
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|
648 if (targetType != NULL) |
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DicomToJsonFlags_IncludeBinary
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|
649 { |
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650 *targetType = "Null"; |
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|
651 } |
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diff
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|
652 } |
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653 else if (value.IsBinary()) |
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|
654 { |
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655 if (flags & DicomToJsonFlags_ConvertBinaryToAscii) |
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DicomToJsonFlags_IncludeBinary
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|
656 { |
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parents:
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|
657 *targetValue = Toolbox::ConvertToAscii(value.GetContent()); |
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|
658 } |
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DicomToJsonFlags_IncludeBinary
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|
659 else |
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|
660 { |
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DicomToJsonFlags_IncludeBinary
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|
661 std::string s; |
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662 value.FormatDataUriScheme(s); |
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|
663 *targetValue = s; |
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|
664 } |
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Sebastien Jodogne <s.jodogne@gmail.com>
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|
665 |
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|
666 if (targetType != NULL) |
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DicomToJsonFlags_IncludeBinary
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|
667 { |
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668 *targetType = "Binary"; |
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|
669 } |
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|
670 } |
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671 else if (maxStringLength == 0 || |
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|
672 value.GetContent().size() <= maxStringLength) |
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DicomToJsonFlags_IncludeBinary
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|
673 { |
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DicomToJsonFlags_IncludeBinary
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|
674 *targetValue = value.GetContent(); |
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DicomToJsonFlags_IncludeBinary
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diff
changeset
|
675 |
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DicomToJsonFlags_IncludeBinary
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diff
changeset
|
676 if (targetType != NULL) |
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DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
677 { |
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DicomToJsonFlags_IncludeBinary
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diff
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|
678 *targetType = "String"; |
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DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
679 } |
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DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
680 } |
15a788a63846
DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
681 else |
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DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
682 { |
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DicomToJsonFlags_IncludeBinary
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diff
changeset
|
683 if (targetType != NULL) |
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DicomToJsonFlags_IncludeBinary
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diff
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|
684 { |
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DicomToJsonFlags_IncludeBinary
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parents:
1737
diff
changeset
|
685 *targetType = "TooLong"; |
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DicomToJsonFlags_IncludeBinary
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diff
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|
686 } |
15a788a63846
DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
687 } |
1687 | 688 } |
35
f6d12037f886
full json vs. simplified json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2
diff
changeset
|
689 |
1687 | 690 |
691 static void DatasetToJson(Json::Value& parent, | |
692 DcmItem& item, | |
693 DicomToJsonFormat format, | |
1735
a001f6226c7c
primitives for flags in dicom-to-json conversions
Sebastien Jodogne <s.jodogne@gmail.com>
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1695
diff
changeset
|
694 DicomToJsonFlags flags, |
1687 | 695 unsigned int maxStringLength, |
696 Encoding encoding); | |
697 | |
698 | |
1690 | 699 void FromDcmtkBridge::ToJson(Json::Value& parent, |
700 DcmElement& element, | |
701 DicomToJsonFormat format, | |
1735
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primitives for flags in dicom-to-json conversions
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1695
diff
changeset
|
702 DicomToJsonFlags flags, |
1690 | 703 unsigned int maxStringLength, |
704 Encoding encoding) | |
1687 | 705 { |
1691 | 706 if (parent.type() == Json::nullValue) |
707 { | |
708 parent = Json::objectValue; | |
709 } | |
710 | |
711 assert(parent.type() == Json::objectValue); | |
1687 | 712 Json::Value& target = PrepareNode(parent, element, format); |
713 | |
714 if (element.isLeaf()) | |
715 { | |
1929
cda5b0ab4ce5
ORTHANC_MAXIMUM_TAG_LENGTH made explicit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1928
diff
changeset
|
716 std::auto_ptr<DicomValue> v(FromDcmtkBridge::ConvertLeafElement(element, flags, maxStringLength, encoding)); |
1738
15a788a63846
DicomToJsonFlags_IncludeBinary
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diff
changeset
|
717 LeafValueToJson(target, *v, format, flags, maxStringLength); |
0 | 718 } |
719 else | |
720 { | |
1688
27d70e9ee2e4
DicomToJsonFormat enumeration
Sebastien Jodogne <s.jodogne@gmail.com>
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1687
diff
changeset
|
721 assert(target.type() == Json::nullValue); |
27d70e9ee2e4
DicomToJsonFormat enumeration
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1687
diff
changeset
|
722 target = Json::arrayValue; |
0 | 723 |
724 // "All subclasses of DcmElement except for DcmSequenceOfItems | |
725 // are leaf nodes, while DcmSequenceOfItems, DcmItem, DcmDataset | |
1687 | 726 // etc. are not." The following dynamic_cast is thus OK. |
0 | 727 DcmSequenceOfItems& sequence = dynamic_cast<DcmSequenceOfItems&>(element); |
728 | |
729 for (unsigned long i = 0; i < sequence.card(); i++) | |
730 { | |
731 DcmItem* child = sequence.getItem(i); | |
1687 | 732 Json::Value& v = target.append(Json::objectValue); |
1735
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primitives for flags in dicom-to-json conversions
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diff
changeset
|
733 DatasetToJson(v, *child, format, flags, maxStringLength, encoding); |
1687 | 734 } |
0 | 735 } |
736 } | |
737 | |
738 | |
1687 | 739 static void DatasetToJson(Json::Value& parent, |
1686 | 740 DcmItem& item, |
741 DicomToJsonFormat format, | |
1735
a001f6226c7c
primitives for flags in dicom-to-json conversions
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
742 DicomToJsonFlags flags, |
1686 | 743 unsigned int maxStringLength, |
744 Encoding encoding) | |
745 { | |
1688
27d70e9ee2e4
DicomToJsonFormat enumeration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1687
diff
changeset
|
746 assert(parent.type() == Json::objectValue); |
1686 | 747 |
748 for (unsigned long i = 0; i < item.card(); i++) | |
749 { | |
750 DcmElement* element = item.getElement(i); | |
1735
a001f6226c7c
primitives for flags in dicom-to-json conversions
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diff
changeset
|
751 if (element == NULL) |
a001f6226c7c
primitives for flags in dicom-to-json conversions
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diff
changeset
|
752 { |
a001f6226c7c
primitives for flags in dicom-to-json conversions
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1695
diff
changeset
|
753 throw OrthancException(ErrorCode_InternalError); |
a001f6226c7c
primitives for flags in dicom-to-json conversions
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1695
diff
changeset
|
754 } |
a001f6226c7c
primitives for flags in dicom-to-json conversions
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1695
diff
changeset
|
755 |
1818
1065401501fb
ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1792
diff
changeset
|
756 DicomTag tag(FromDcmtkBridge::Convert(element->getTag())); |
1065401501fb
ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1792
diff
changeset
|
757 |
1065401501fb
ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1792
diff
changeset
|
758 /*element->getTag().isPrivate()*/ |
1065401501fb
ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1792
diff
changeset
|
759 if (tag.IsPrivate() && |
1065401501fb
ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1792
diff
changeset
|
760 !(flags & DicomToJsonFlags_IncludePrivateTags)) |
1736
b953c6eef28d
ToJson: IncludePrivateTags and IncludeUnknownTags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1735
diff
changeset
|
761 { |
b953c6eef28d
ToJson: IncludePrivateTags and IncludeUnknownTags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1735
diff
changeset
|
762 continue; |
b953c6eef28d
ToJson: IncludePrivateTags and IncludeUnknownTags
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
763 } |
b953c6eef28d
ToJson: IncludePrivateTags and IncludeUnknownTags
Sebastien Jodogne <s.jodogne@gmail.com>
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1735
diff
changeset
|
764 |
b953c6eef28d
ToJson: IncludePrivateTags and IncludeUnknownTags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1735
diff
changeset
|
765 if (!(flags & DicomToJsonFlags_IncludeUnknownTags)) |
1735
a001f6226c7c
primitives for flags in dicom-to-json conversions
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
766 { |
1736
b953c6eef28d
ToJson: IncludePrivateTags and IncludeUnknownTags
Sebastien Jodogne <s.jodogne@gmail.com>
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1735
diff
changeset
|
767 DictionaryLocker locker; |
b953c6eef28d
ToJson: IncludePrivateTags and IncludeUnknownTags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1735
diff
changeset
|
768 if (locker->findEntry(element->getTag(), NULL) == NULL) |
b953c6eef28d
ToJson: IncludePrivateTags and IncludeUnknownTags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1735
diff
changeset
|
769 { |
b953c6eef28d
ToJson: IncludePrivateTags and IncludeUnknownTags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1735
diff
changeset
|
770 continue; |
b953c6eef28d
ToJson: IncludePrivateTags and IncludeUnknownTags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1735
diff
changeset
|
771 } |
1735
a001f6226c7c
primitives for flags in dicom-to-json conversions
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1695
diff
changeset
|
772 } |
1736
b953c6eef28d
ToJson: IncludePrivateTags and IncludeUnknownTags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1735
diff
changeset
|
773 |
1739
df331354cea2
include binary in ToJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1738
diff
changeset
|
774 DcmEVR evr = element->getTag().getEVR(); |
df331354cea2
include binary in ToJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1738
diff
changeset
|
775 if (evr == EVR_OB || |
df331354cea2
include binary in ToJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1738
diff
changeset
|
776 evr == EVR_OF || |
df331354cea2
include binary in ToJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1738
diff
changeset
|
777 evr == EVR_OW || |
df331354cea2
include binary in ToJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1738
diff
changeset
|
778 evr == EVR_UN || |
df331354cea2
include binary in ToJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1738
diff
changeset
|
779 evr == EVR_ox) |
df331354cea2
include binary in ToJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1738
diff
changeset
|
780 { |
df331354cea2
include binary in ToJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1738
diff
changeset
|
781 // This is a binary tag |
df331354cea2
include binary in ToJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1738
diff
changeset
|
782 if ((tag == DICOM_TAG_PIXEL_DATA && !(flags & DicomToJsonFlags_IncludePixelData)) || |
df331354cea2
include binary in ToJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1738
diff
changeset
|
783 (tag != DICOM_TAG_PIXEL_DATA && !(flags & DicomToJsonFlags_IncludeBinary))) |
df331354cea2
include binary in ToJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1738
diff
changeset
|
784 { |
df331354cea2
include binary in ToJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1738
diff
changeset
|
785 continue; |
df331354cea2
include binary in ToJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1738
diff
changeset
|
786 } |
df331354cea2
include binary in ToJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1738
diff
changeset
|
787 } |
df331354cea2
include binary in ToJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1738
diff
changeset
|
788 |
1736
b953c6eef28d
ToJson: IncludePrivateTags and IncludeUnknownTags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1735
diff
changeset
|
789 FromDcmtkBridge::ToJson(parent, *element, format, flags, maxStringLength, encoding); |
1686 | 790 } |
791 } | |
792 | |
793 | |
1687 | 794 void FromDcmtkBridge::ToJson(Json::Value& target, |
0 | 795 DcmDataset& dataset, |
1686 | 796 DicomToJsonFormat format, |
1735
a001f6226c7c
primitives for flags in dicom-to-json conversions
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1695
diff
changeset
|
797 DicomToJsonFlags flags, |
1928
84c7eaeb5244
Configuration::GetDefaultEncoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1927
diff
changeset
|
798 unsigned int maxStringLength, |
84c7eaeb5244
Configuration::GetDefaultEncoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1927
diff
changeset
|
799 Encoding defaultEncoding) |
0 | 800 { |
1688
27d70e9ee2e4
DicomToJsonFormat enumeration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1687
diff
changeset
|
801 target = Json::objectValue; |
1928
84c7eaeb5244
Configuration::GetDefaultEncoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1927
diff
changeset
|
802 DatasetToJson(target, dataset, format, flags, maxStringLength, DetectEncoding(dataset, defaultEncoding)); |
0 | 803 } |
804 | |
805 | |
1831
3ae2ff249675
"/instances/.../header" to get the meta information (header) of the DICOM instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1818
diff
changeset
|
806 void FromDcmtkBridge::ToJson(Json::Value& target, |
3ae2ff249675
"/instances/.../header" to get the meta information (header) of the DICOM instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1818
diff
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807 DcmMetaInfo& dataset, |
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808 DicomToJsonFormat format, |
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809 DicomToJsonFlags flags, |
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810 unsigned int maxStringLength) |
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811 { |
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812 target = Json::objectValue; |
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813 DatasetToJson(target, dataset, format, flags, maxStringLength, Encoding_Ascii); |
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814 } |
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815 |
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816 |
0 | 817 std::string FromDcmtkBridge::GetName(const DicomTag& t) |
818 { | |
106 | 819 // Some patches for important tags because of different DICOM |
820 // dictionaries between DCMTK versions | |
291
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821 std::string n = t.GetMainTagsName(); |
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822 if (n.size() != 0) |
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823 { |
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824 return n; |
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825 } |
106 | 826 // End of patches |
827 | |
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828 #if 0 |
0 | 829 DcmTagKey tag(t.GetGroup(), t.GetElement()); |
830 const DcmDataDictionary& dict = dcmDataDict.rdlock(); | |
831 const DcmDictEntry* entry = dict.findEntry(tag, NULL); | |
832 | |
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833 std::string s(DcmTag_ERROR_TagName); |
0 | 834 if (entry != NULL) |
835 { | |
836 s = std::string(entry->getTagName()); | |
837 } | |
838 | |
839 dcmDataDict.unlock(); | |
840 return s; | |
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841 #else |
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842 DcmTag tag(t.GetGroup(), t.GetElement()); |
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843 const char* name = tag.getTagName(); |
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844 if (name == NULL) |
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845 { |
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846 return DcmTag_ERROR_TagName; |
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847 } |
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848 else |
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849 { |
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850 return std::string(name); |
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851 } |
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852 #endif |
0 | 853 } |
854 | |
855 | |
304 | 856 DicomTag FromDcmtkBridge::ParseTag(const char* name) |
0 | 857 { |
304 | 858 if (strlen(name) == 9 && |
859 isxdigit(name[0]) && | |
860 isxdigit(name[1]) && | |
861 isxdigit(name[2]) && | |
862 isxdigit(name[3]) && | |
991
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863 (name[4] == '-' || name[4] == ',') && |
304 | 864 isxdigit(name[5]) && |
865 isxdigit(name[6]) && | |
866 isxdigit(name[7]) && | |
867 isxdigit(name[8])) | |
868 { | |
869 uint16_t group = GetTagValue(name); | |
870 uint16_t element = GetTagValue(name + 5); | |
871 return DicomTag(group, element); | |
872 } | |
873 | |
1861
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874 if (strlen(name) == 8 && |
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875 isxdigit(name[0]) && |
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876 isxdigit(name[1]) && |
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877 isxdigit(name[2]) && |
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878 isxdigit(name[3]) && |
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879 isxdigit(name[4]) && |
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880 isxdigit(name[5]) && |
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881 isxdigit(name[6]) && |
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882 isxdigit(name[7])) |
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883 { |
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884 uint16_t group = GetTagValue(name); |
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885 uint16_t element = GetTagValue(name + 4); |
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886 return DicomTag(group, element); |
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887 } |
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888 |
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889 #if 0 |
0 | 890 const DcmDataDictionary& dict = dcmDataDict.rdlock(); |
891 const DcmDictEntry* entry = dict.findEntry(name); | |
892 | |
893 if (entry == NULL) | |
894 { | |
895 dcmDataDict.unlock(); | |
1582
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896 throw OrthancException(ErrorCode_UnknownDicomTag); |
0 | 897 } |
898 else | |
899 { | |
900 DcmTagKey key = entry->getKey(); | |
901 DicomTag tag(key.getGroup(), key.getElement()); | |
902 dcmDataDict.unlock(); | |
903 return tag; | |
904 } | |
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905 #else |
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906 DcmTag tag; |
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907 if (DcmTag::findTagFromName(name, tag).good()) |
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908 { |
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909 return DicomTag(tag.getGTag(), tag.getETag()); |
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910 } |
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911 else |
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912 { |
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913 throw OrthancException(ErrorCode_UnknownDicomTag); |
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914 } |
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915 #endif |
0 | 916 } |
917 | |
918 | |
1655
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919 bool FromDcmtkBridge::IsUnknownTag(const DicomTag& tag) |
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920 { |
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921 DcmTag tmp(tag.GetGroup(), tag.GetElement()); |
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922 return tmp.isUnknownVR(); |
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923 } |
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924 |
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925 |
0 | 926 void FromDcmtkBridge::ToJson(Json::Value& result, |
1368 | 927 const DicomMap& values, |
928 bool simplify) | |
0 | 929 { |
930 if (result.type() != Json::objectValue) | |
931 { | |
62 | 932 throw OrthancException(ErrorCode_BadParameterType); |
0 | 933 } |
934 | |
935 result.clear(); | |
936 | |
937 for (DicomMap::Map::const_iterator | |
656 | 938 it = values.map_.begin(); it != values.map_.end(); ++it) |
0 | 939 { |
1368 | 940 if (simplify) |
941 { | |
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942 if (it->second->IsNull()) |
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943 { |
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944 result[GetName(it->first)] = Json::nullValue; |
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945 } |
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946 else |
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947 { |
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948 // TODO IsBinary |
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949 result[GetName(it->first)] = it->second->GetContent(); |
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950 } |
1368 | 951 } |
952 else | |
953 { | |
954 Json::Value value = Json::objectValue; | |
955 | |
956 value["Name"] = GetName(it->first); | |
957 | |
958 if (it->second->IsNull()) | |
959 { | |
960 value["Type"] = "Null"; | |
961 value["Value"] = Json::nullValue; | |
962 } | |
963 else | |
964 { | |
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965 // TODO IsBinary |
1368 | 966 value["Type"] = "String"; |
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967 value["Value"] = it->second->GetContent(); |
1368 | 968 } |
969 | |
970 result[it->first.Format()] = value; | |
971 } | |
0 | 972 } |
973 } | |
176 | 974 |
975 | |
788 | 976 std::string FromDcmtkBridge::GenerateUniqueIdentifier(ResourceType level) |
176 | 977 { |
978 char uid[100]; | |
979 | |
980 switch (level) | |
981 { | |
788 | 982 case ResourceType_Patient: |
311 | 983 // The "PatientID" field is of type LO (Long String), 64 |
984 // Bytes Maximum. An UUID is of length 36, thus it can be used | |
985 // as a random PatientID. | |
986 return Toolbox::GenerateUuid(); | |
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987 |
788 | 988 case ResourceType_Instance: |
302
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989 return dcmGenerateUniqueIdentifier(uid, SITE_INSTANCE_UID_ROOT); |
176 | 990 |
788 | 991 case ResourceType_Series: |
302
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992 return dcmGenerateUniqueIdentifier(uid, SITE_SERIES_UID_ROOT); |
176 | 993 |
788 | 994 case ResourceType_Study: |
302
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995 return dcmGenerateUniqueIdentifier(uid, SITE_STUDY_UID_ROOT); |
176 | 996 |
302
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997 default: |
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998 throw OrthancException(ErrorCode_ParameterOutOfRange); |
176 | 999 } |
1000 } | |
1001 | |
291
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1002 bool FromDcmtkBridge::SaveToMemoryBuffer(std::string& buffer, |
1004
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1003 DcmDataset& dataSet) |
291
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1004 { |
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1005 // Determine the transfer syntax which shall be used to write the |
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1006 // information to the file. We always switch to the Little Endian |
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1007 // syntax, with explicit length. |
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1008 |
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1009 // http://support.dcmtk.org/docs/dcxfer_8h-source.html |
661
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1010 |
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1011 |
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1012 /** |
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1013 * Note that up to Orthanc 0.7.1 (inclusive), the |
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1014 * "EXS_LittleEndianExplicit" was always used to save the DICOM |
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1015 * dataset into memory. We now keep the original transfer syntax |
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1016 * (if available). |
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1017 **/ |
1004
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1018 E_TransferSyntax xfer = dataSet.getOriginalXfer(); |
661
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1019 if (xfer == EXS_Unknown) |
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1020 { |
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1021 // No information about the original transfer syntax: This is |
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1022 // most probably a DICOM dataset that was read from memory. |
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1023 xfer = EXS_LittleEndianExplicit; |
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1024 } |
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1025 |
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1026 E_EncodingType encodingType = /*opt_sequenceType*/ EET_ExplicitLength; |
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1027 |
661
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1028 // Create the meta-header information |
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1029 DcmFileFormat ff(&dataSet); |
661
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1030 ff.validateMetaInfo(xfer); |
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1031 ff.removeInvalidGroups(); |
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1032 |
661
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1033 // Create a memory buffer with the proper size |
1876
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1034 { |
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1035 const uint32_t estimatedSize = ff.calcElementLength(xfer, encodingType); // (*) |
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1036 buffer.resize(estimatedSize); |
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1037 } |
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1038 |
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1039 DcmOutputBufferStream ob(&buffer[0], buffer.size()); |
291
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1040 |
661
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1041 // Fill the memory buffer with the meta-header and the dataset |
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1042 ff.transferInit(); |
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1043 OFCondition c = ff.write(ob, xfer, encodingType, NULL, |
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1044 /*opt_groupLength*/ EGL_recalcGL, |
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1045 /*opt_paddingType*/ EPD_withoutPadding); |
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1046 ff.transferEnd(); |
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1047 |
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1048 if (c.good()) |
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1049 { |
1876
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1050 // The DICOM file is successfully written, truncate the target |
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1051 // buffer if its size was overestimated by (*) |
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1052 ob.flush(); |
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1053 |
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1054 size_t effectiveSize = static_cast<size_t>(ob.tell()); |
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1055 if (effectiveSize < buffer.size()) |
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1056 { |
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1057 buffer.resize(effectiveSize); |
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1058 } |
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1059 |
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1060 return true; |
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1061 } |
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1062 else |
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1063 { |
1876
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1064 // Error |
291
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1065 buffer.clear(); |
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1066 return false; |
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1067 } |
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1068 } |
1360 | 1069 |
1070 | |
1417
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1071 ValueRepresentation FromDcmtkBridge::GetValueRepresentation(const DicomTag& tag) |
1360 | 1072 { |
1073 DcmTag t(tag.GetGroup(), tag.GetElement()); | |
1417
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1074 switch (t.getEVR()) |
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1075 { |
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1076 case EVR_PN: |
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1077 return ValueRepresentation_PatientName; |
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1078 |
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1079 case EVR_DA: |
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1080 return ValueRepresentation_Date; |
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1081 |
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1082 case EVR_DT: |
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1083 return ValueRepresentation_DateTime; |
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1084 |
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1085 case EVR_TM: |
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1086 return ValueRepresentation_Time; |
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1087 |
1792 | 1088 case EVR_SQ: |
1089 return ValueRepresentation_Sequence; | |
1090 | |
1417
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1091 default: |
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1092 return ValueRepresentation_Other; |
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1093 } |
1360 | 1094 } |
1095 | |
1689 | 1096 |
1693
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1097 static bool IsBinaryTag(const DcmTag& key) |
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1098 { |
1818
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1099 return (key.isUnknownVR() || |
1739
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1100 key.getEVR() == EVR_OB || |
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1101 key.getEVR() == EVR_OF || |
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1102 key.getEVR() == EVR_OW || |
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1103 key.getEVR() == EVR_UN || |
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1104 key.getEVR() == EVR_ox); |
1693
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1105 } |
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1106 |
1689 | 1107 |
1108 DcmElement* FromDcmtkBridge::CreateElementForTag(const DicomTag& tag) | |
1109 { | |
1110 DcmTag key(tag.GetGroup(), tag.GetElement()); | |
1111 | |
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1112 if (tag.IsPrivate() || |
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1113 IsBinaryTag(key)) |
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1114 { |
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1115 return new DcmOtherByteOtherWord(key); |
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1116 } |
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1117 |
1689 | 1118 switch (key.getEVR()) |
1119 { | |
1120 // http://support.dcmtk.org/docs/dcvr_8h-source.html | |
1121 | |
1122 /** | |
1739
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1123 * Binary types, handled above |
1689 | 1124 **/ |
1125 | |
1126 case EVR_OB: // other byte | |
1127 case EVR_OF: // other float | |
1128 case EVR_OW: // other word | |
1129 case EVR_UN: // unknown value representation | |
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1130 case EVR_ox: // OB or OW depending on context |
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1131 throw OrthancException(ErrorCode_InternalError); |
1689 | 1132 |
1133 | |
1134 /** | |
1135 * String types. | |
1136 * http://support.dcmtk.org/docs/classDcmByteString.html | |
1137 **/ | |
1138 | |
1139 case EVR_AS: // age string | |
1140 return new DcmAgeString(key); | |
1141 | |
1142 case EVR_AE: // application entity title | |
1143 return new DcmApplicationEntity(key); | |
1144 | |
1145 case EVR_CS: // code string | |
1146 return new DcmCodeString(key); | |
1147 | |
1148 case EVR_DA: // date string | |
1149 return new DcmDate(key); | |
1150 | |
1151 case EVR_DT: // date time string | |
1152 return new DcmDateTime(key); | |
1153 | |
1154 case EVR_DS: // decimal string | |
1155 return new DcmDecimalString(key); | |
1156 | |
1157 case EVR_IS: // integer string | |
1158 return new DcmIntegerString(key); | |
1159 | |
1160 case EVR_TM: // time string | |
1161 return new DcmTime(key); | |
1162 | |
1163 case EVR_UI: // unique identifier | |
1164 return new DcmUniqueIdentifier(key); | |
1165 | |
1166 case EVR_ST: // short text | |
1167 return new DcmShortText(key); | |
1168 | |
1169 case EVR_LO: // long string | |
1170 return new DcmLongString(key); | |
1171 | |
1172 case EVR_LT: // long text | |
1173 return new DcmLongText(key); | |
1174 | |
1175 case EVR_UT: // unlimited text | |
1176 return new DcmUnlimitedText(key); | |
1177 | |
1178 case EVR_SH: // short string | |
1179 return new DcmShortString(key); | |
1180 | |
1181 case EVR_PN: // person name | |
1182 return new DcmPersonName(key); | |
1183 | |
1184 | |
1185 /** | |
1186 * Numerical types | |
1187 **/ | |
1188 | |
1189 case EVR_SL: // signed long | |
1190 return new DcmSignedLong(key); | |
1191 | |
1192 case EVR_SS: // signed short | |
1193 return new DcmSignedShort(key); | |
1194 | |
1195 case EVR_UL: // unsigned long | |
1196 return new DcmUnsignedLong(key); | |
1197 | |
1198 case EVR_US: // unsigned short | |
1199 return new DcmUnsignedShort(key); | |
1200 | |
1201 case EVR_FL: // float single-precision | |
1202 return new DcmFloatingPointSingle(key); | |
1203 | |
1204 case EVR_FD: // float double-precision | |
1205 return new DcmFloatingPointDouble(key); | |
1206 | |
1207 | |
1208 /** | |
1209 * Sequence types, should never occur at this point. | |
1210 **/ | |
1211 | |
1212 case EVR_SQ: // sequence of items | |
1213 throw OrthancException(ErrorCode_ParameterOutOfRange); | |
1214 | |
1215 | |
1216 /** | |
1739
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1217 * TODO |
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1218 **/ |
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1219 |
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1220 case EVR_AT: // attribute tag |
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1221 throw OrthancException(ErrorCode_NotImplemented); |
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1222 |
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1223 |
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1224 /** |
1689 | 1225 * Internal to DCMTK. |
1226 **/ | |
1227 | |
1228 case EVR_xs: // SS or US depending on context | |
1229 case EVR_lt: // US, SS or OW depending on context, used for LUT Data (thus the name) | |
1230 case EVR_na: // na="not applicable", for data which has no VR | |
1231 case EVR_up: // up="unsigned pointer", used internally for DICOMDIR suppor | |
1232 case EVR_item: // used internally for items | |
1233 case EVR_metainfo: // used internally for meta info datasets | |
1234 case EVR_dataset: // used internally for datasets | |
1235 case EVR_fileFormat: // used internally for DICOM files | |
1236 case EVR_dicomDir: // used internally for DICOMDIR objects | |
1237 case EVR_dirRecord: // used internally for DICOMDIR records | |
1238 case EVR_pixelSQ: // used internally for pixel sequences in a compressed image | |
1239 case EVR_pixelItem: // used internally for pixel items in a compressed image | |
1240 case EVR_UNKNOWN: // used internally for elements with unknown VR (encoded with 4-byte length field in explicit VR) | |
1241 case EVR_PixelData: // used internally for uncompressed pixeld data | |
1242 case EVR_OverlayData: // used internally for overlay data | |
1243 case EVR_UNKNOWN2B: // used internally for elements with unknown VR with 2-byte length field in explicit VR | |
1244 default: | |
1245 break; | |
1246 } | |
1247 | |
1248 throw OrthancException(ErrorCode_InternalError); | |
1249 } | |
1250 | |
1251 | |
1252 | |
1253 void FromDcmtkBridge::FillElementWithString(DcmElement& element, | |
1254 const DicomTag& tag, | |
1695 | 1255 const std::string& utf8Value, |
1818
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1256 bool decodeDataUriScheme, |
1695 | 1257 Encoding dicomEncoding) |
1689 | 1258 { |
1259 std::string binary; | |
1695 | 1260 const std::string* decoded = &utf8Value; |
1689 | 1261 |
1818
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1262 if (decodeDataUriScheme && |
1695 | 1263 boost::starts_with(utf8Value, "data:application/octet-stream;base64,")) |
1689 | 1264 { |
1265 std::string mime; | |
1695 | 1266 Toolbox::DecodeDataUriScheme(mime, binary, utf8Value); |
1267 decoded = &binary; | |
1268 } | |
1269 else if (dicomEncoding != Encoding_Utf8) | |
1270 { | |
1271 binary = Toolbox::ConvertFromUtf8(utf8Value, dicomEncoding); | |
1689 | 1272 decoded = &binary; |
1273 } | |
1274 | |
1693
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1275 DcmTag key(tag.GetGroup(), tag.GetElement()); |
1689 | 1276 |
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1277 if (tag.IsPrivate() || |
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1278 IsBinaryTag(key)) |
1689 | 1279 { |
1280 if (element.putUint8Array((const Uint8*) decoded->c_str(), decoded->size()).good()) | |
1281 { | |
1282 return; | |
1283 } | |
1284 else | |
1285 { | |
1286 throw OrthancException(ErrorCode_InternalError); | |
1287 } | |
1288 } | |
1289 | |
1290 bool ok = false; | |
1291 | |
1292 try | |
1293 { | |
1294 switch (key.getEVR()) | |
1295 { | |
1296 // http://support.dcmtk.org/docs/dcvr_8h-source.html | |
1297 | |
1298 /** | |
1299 * TODO. | |
1300 **/ | |
1301 | |
1302 case EVR_OB: // other byte | |
1303 case EVR_OF: // other float | |
1304 case EVR_OW: // other word | |
1305 case EVR_AT: // attribute tag | |
1306 throw OrthancException(ErrorCode_NotImplemented); | |
1307 | |
1308 case EVR_UN: // unknown value representation | |
1309 throw OrthancException(ErrorCode_ParameterOutOfRange); | |
1310 | |
1311 | |
1312 /** | |
1313 * String types. | |
1314 **/ | |
1315 | |
1316 case EVR_DS: // decimal string | |
1317 case EVR_IS: // integer string | |
1318 case EVR_AS: // age string | |
1319 case EVR_DA: // date string | |
1320 case EVR_DT: // date time string | |
1321 case EVR_TM: // time string | |
1322 case EVR_AE: // application entity title | |
1323 case EVR_CS: // code string | |
1324 case EVR_SH: // short string | |
1325 case EVR_LO: // long string | |
1326 case EVR_ST: // short text | |
1327 case EVR_LT: // long text | |
1328 case EVR_UT: // unlimited text | |
1329 case EVR_PN: // person name | |
1330 case EVR_UI: // unique identifier | |
1331 { | |
1332 ok = element.putString(decoded->c_str()).good(); | |
1333 break; | |
1334 } | |
1335 | |
1336 | |
1337 /** | |
1338 * Numerical types | |
1339 **/ | |
1340 | |
1341 case EVR_SL: // signed long | |
1342 { | |
1343 ok = element.putSint32(boost::lexical_cast<Sint32>(*decoded)).good(); | |
1344 break; | |
1345 } | |
1346 | |
1347 case EVR_SS: // signed short | |
1348 { | |
1349 ok = element.putSint16(boost::lexical_cast<Sint16>(*decoded)).good(); | |
1350 break; | |
1351 } | |
1352 | |
1353 case EVR_UL: // unsigned long | |
1354 { | |
1355 ok = element.putUint32(boost::lexical_cast<Uint32>(*decoded)).good(); | |
1356 break; | |
1357 } | |
1358 | |
1359 case EVR_US: // unsigned short | |
1360 { | |
1361 ok = element.putUint16(boost::lexical_cast<Uint16>(*decoded)).good(); | |
1362 break; | |
1363 } | |
1364 | |
1365 case EVR_FL: // float single-precision | |
1366 { | |
1367 ok = element.putFloat32(boost::lexical_cast<float>(*decoded)).good(); | |
1368 break; | |
1369 } | |
1370 | |
1371 case EVR_FD: // float double-precision | |
1372 { | |
1373 ok = element.putFloat64(boost::lexical_cast<double>(*decoded)).good(); | |
1374 break; | |
1375 } | |
1376 | |
1377 | |
1378 /** | |
1379 * Sequence types, should never occur at this point. | |
1380 **/ | |
1381 | |
1382 case EVR_SQ: // sequence of items | |
1383 { | |
1384 ok = false; | |
1385 break; | |
1386 } | |
1387 | |
1388 | |
1389 /** | |
1390 * Internal to DCMTK. | |
1391 **/ | |
1392 | |
1393 case EVR_ox: // OB or OW depending on context | |
1394 case EVR_xs: // SS or US depending on context | |
1395 case EVR_lt: // US, SS or OW depending on context, used for LUT Data (thus the name) | |
1396 case EVR_na: // na="not applicable", for data which has no VR | |
1397 case EVR_up: // up="unsigned pointer", used internally for DICOMDIR suppor | |
1398 case EVR_item: // used internally for items | |
1399 case EVR_metainfo: // used internally for meta info datasets | |
1400 case EVR_dataset: // used internally for datasets | |
1401 case EVR_fileFormat: // used internally for DICOM files | |
1402 case EVR_dicomDir: // used internally for DICOMDIR objects | |
1403 case EVR_dirRecord: // used internally for DICOMDIR records | |
1404 case EVR_pixelSQ: // used internally for pixel sequences in a compressed image | |
1405 case EVR_pixelItem: // used internally for pixel items in a compressed image | |
1406 case EVR_UNKNOWN: // used internally for elements with unknown VR (encoded with 4-byte length field in explicit VR) | |
1407 case EVR_PixelData: // used internally for uncompressed pixeld data | |
1408 case EVR_OverlayData: // used internally for overlay data | |
1409 case EVR_UNKNOWN2B: // used internally for elements with unknown VR with 2-byte length field in explicit VR | |
1410 default: | |
1411 break; | |
1412 } | |
1413 } | |
1414 catch (boost::bad_lexical_cast&) | |
1415 { | |
1416 ok = false; | |
1417 } | |
1418 | |
1419 if (!ok) | |
1420 { | |
1421 throw OrthancException(ErrorCode_InternalError); | |
1422 } | |
1423 } | |
1424 | |
1425 | |
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1426 DcmElement* FromDcmtkBridge::FromJson(const DicomTag& tag, |
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1427 const Json::Value& value, |
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1428 bool decodeDataUriScheme, |
1695 | 1429 Encoding dicomEncoding) |
1689 | 1430 { |
1431 std::auto_ptr<DcmElement> element; | |
1432 | |
1690 | 1433 switch (value.type()) |
1689 | 1434 { |
1690 | 1435 case Json::stringValue: |
1436 element.reset(CreateElementForTag(tag)); | |
1818
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1437 FillElementWithString(*element, tag, value.asString(), decodeDataUriScheme, dicomEncoding); |
1690 | 1438 break; |
1439 | |
1440 case Json::arrayValue: | |
1441 { | |
1442 DcmTag key(tag.GetGroup(), tag.GetElement()); | |
1443 if (key.getEVR() != EVR_SQ) | |
1444 { | |
1445 throw OrthancException(ErrorCode_BadParameterType); | |
1446 } | |
1447 | |
1448 DcmSequenceOfItems* sequence = new DcmSequenceOfItems(key, value.size()); | |
1449 element.reset(sequence); | |
1450 | |
1451 for (Json::Value::ArrayIndex i = 0; i < value.size(); i++) | |
1452 { | |
1453 std::auto_ptr<DcmItem> item(new DcmItem); | |
1454 | |
1455 Json::Value::Members members = value[i].getMemberNames(); | |
1456 for (Json::Value::ArrayIndex j = 0; j < members.size(); j++) | |
1457 { | |
1818
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1458 item->insert(FromJson(ParseTag(members[j]), value[i][members[j]], decodeDataUriScheme, dicomEncoding)); |
1690 | 1459 } |
1460 | |
1461 sequence->append(item.release()); | |
1462 } | |
1463 | |
1464 break; | |
1465 } | |
1466 | |
1467 default: | |
1468 throw OrthancException(ErrorCode_BadParameterType); | |
1689 | 1469 } |
1470 | |
1471 return element.release(); | |
1472 } | |
1765
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1473 |
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1474 |
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1475 DcmEVR FromDcmtkBridge::ParseValueRepresentation(const std::string& s) |
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1476 { |
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1477 if (s == "AE") |
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1478 return EVR_AE; |
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1479 |
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1480 if (s == "AS") |
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1481 return EVR_AS; |
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1482 |
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1483 if (s == "AT") |
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1484 return EVR_AT; |
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1485 |
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1486 if (s == "CS") |
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1487 return EVR_CS; |
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1488 |
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1489 if (s == "DA") |
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1490 return EVR_DA; |
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1491 |
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1492 if (s == "DS") |
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1493 return EVR_DS; |
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1494 |
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1495 if (s == "DT") |
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1496 return EVR_DT; |
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1497 |
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1498 if (s == "FD") |
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1499 return EVR_FD; |
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1500 |
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1501 if (s == "FL") |
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1502 return EVR_FL; |
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1503 |
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1504 if (s == "IS") |
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1505 return EVR_IS; |
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1506 |
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1507 if (s == "LO") |
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1508 return EVR_LO; |
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1509 |
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1510 if (s == "LT") |
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1511 return EVR_LT; |
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1512 |
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1513 if (s == "OB") |
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1514 return EVR_OB; |
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1515 |
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1516 if (s == "OF") |
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1517 return EVR_OF; |
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1518 |
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1519 if (s == "OW") |
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1520 return EVR_OW; |
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1521 |
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1522 if (s == "PN") |
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parents:
1739
diff
changeset
|
1523 return EVR_PN; |
57b9e6890482
New configuration option: "Dictionary" to declare custom DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1739
diff
changeset
|
1524 |
57b9e6890482
New configuration option: "Dictionary" to declare custom DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1739
diff
changeset
|
1525 if (s == "SH") |
57b9e6890482
New configuration option: "Dictionary" to declare custom DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1739
diff
changeset
|
1526 return EVR_SH; |
57b9e6890482
New configuration option: "Dictionary" to declare custom DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1739
diff
changeset
|
1527 |
57b9e6890482
New configuration option: "Dictionary" to declare custom DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1739
diff
changeset
|
1528 if (s == "SL") |
57b9e6890482
New configuration option: "Dictionary" to declare custom DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1739
diff
changeset
|
1529 return EVR_SL; |
57b9e6890482
New configuration option: "Dictionary" to declare custom DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1739
diff
changeset
|
1530 |
57b9e6890482
New configuration option: "Dictionary" to declare custom DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1739
diff
changeset
|
1531 if (s == "SQ") |
57b9e6890482
New configuration option: "Dictionary" to declare custom DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1739
diff
changeset
|
1532 return EVR_SQ; |
57b9e6890482
New configuration option: "Dictionary" to declare custom DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1739
diff
changeset
|
1533 |
57b9e6890482
New configuration option: "Dictionary" to declare custom DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1739
diff
changeset
|
1534 if (s == "SS") |
57b9e6890482
New configuration option: "Dictionary" to declare custom DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1739
diff
changeset
|
1535 return EVR_SS; |
57b9e6890482
New configuration option: "Dictionary" to declare custom DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1739
diff
changeset
|
1536 |
57b9e6890482
New configuration option: "Dictionary" to declare custom DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1739
diff
changeset
|
1537 if (s == "ST") |
57b9e6890482
New configuration option: "Dictionary" to declare custom DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1739
diff
changeset
|
1538 return EVR_ST; |
57b9e6890482
New configuration option: "Dictionary" to declare custom DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1739
diff
changeset
|
1539 |
57b9e6890482
New configuration option: "Dictionary" to declare custom DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1739
diff
changeset
|
1540 if (s == "TM") |
57b9e6890482
New configuration option: "Dictionary" to declare custom DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1739
diff
changeset
|
1541 return EVR_TM; |
57b9e6890482
New configuration option: "Dictionary" to declare custom DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1739
diff
changeset
|
1542 |
57b9e6890482
New configuration option: "Dictionary" to declare custom DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1739
diff
changeset
|
1543 if (s == "UI") |
57b9e6890482
New configuration option: "Dictionary" to declare custom DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1739
diff
changeset
|
1544 return EVR_UI; |
57b9e6890482
New configuration option: "Dictionary" to declare custom DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1739
diff
changeset
|
1545 |
57b9e6890482
New configuration option: "Dictionary" to declare custom DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1739
diff
changeset
|
1546 if (s == "UL") |
57b9e6890482
New configuration option: "Dictionary" to declare custom DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1739
diff
changeset
|
1547 return EVR_UL; |
57b9e6890482
New configuration option: "Dictionary" to declare custom DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1739
diff
changeset
|
1548 |
57b9e6890482
New configuration option: "Dictionary" to declare custom DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1739
diff
changeset
|
1549 if (s == "UN") |
57b9e6890482
New configuration option: "Dictionary" to declare custom DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1739
diff
changeset
|
1550 return EVR_UN; |
57b9e6890482
New configuration option: "Dictionary" to declare custom DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1739
diff
changeset
|
1551 |
57b9e6890482
New configuration option: "Dictionary" to declare custom DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1739
diff
changeset
|
1552 if (s == "US") |
57b9e6890482
New configuration option: "Dictionary" to declare custom DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1739
diff
changeset
|
1553 return EVR_US; |
57b9e6890482
New configuration option: "Dictionary" to declare custom DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1739
diff
changeset
|
1554 |
57b9e6890482
New configuration option: "Dictionary" to declare custom DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1739
diff
changeset
|
1555 if (s == "UT") |
57b9e6890482
New configuration option: "Dictionary" to declare custom DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1739
diff
changeset
|
1556 return EVR_UT; |
57b9e6890482
New configuration option: "Dictionary" to declare custom DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1739
diff
changeset
|
1557 |
57b9e6890482
New configuration option: "Dictionary" to declare custom DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1739
diff
changeset
|
1558 throw OrthancException(ErrorCode_ParameterOutOfRange); |
57b9e6890482
New configuration option: "Dictionary" to declare custom DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1739
diff
changeset
|
1559 } |
1924
6c73df12ca51
New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1900
diff
changeset
|
1560 |
6c73df12ca51
New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1900
diff
changeset
|
1561 |
6c73df12ca51
New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1900
diff
changeset
|
1562 DcmPixelSequence* FromDcmtkBridge::GetPixelSequence(DcmDataset& dataset) |
6c73df12ca51
New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1900
diff
changeset
|
1563 { |
6c73df12ca51
New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1900
diff
changeset
|
1564 DcmElement *element = NULL; |
1927
b60f27664b8f
simplification in FromDcmtkBridge
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1924
diff
changeset
|
1565 if (!dataset.findAndGetElement(DCM_PixelData, element).good()) |
1924
6c73df12ca51
New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1900
diff
changeset
|
1566 { |
6c73df12ca51
New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1900
diff
changeset
|
1567 throw OrthancException(ErrorCode_BadFileFormat); |
6c73df12ca51
New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1900
diff
changeset
|
1568 } |
6c73df12ca51
New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1900
diff
changeset
|
1569 |
6c73df12ca51
New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1900
diff
changeset
|
1570 DcmPixelData& pixelData = dynamic_cast<DcmPixelData&>(*element); |
6c73df12ca51
New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1900
diff
changeset
|
1571 DcmPixelSequence* pixelSequence = NULL; |
6c73df12ca51
New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1900
diff
changeset
|
1572 if (!pixelData.getEncapsulatedRepresentation |
6c73df12ca51
New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1900
diff
changeset
|
1573 (dataset.getOriginalXfer(), NULL, pixelSequence).good()) |
6c73df12ca51
New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1900
diff
changeset
|
1574 { |
6c73df12ca51
New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1900
diff
changeset
|
1575 return NULL; |
6c73df12ca51
New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1900
diff
changeset
|
1576 } |
6c73df12ca51
New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1900
diff
changeset
|
1577 else |
6c73df12ca51
New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1900
diff
changeset
|
1578 { |
6c73df12ca51
New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1900
diff
changeset
|
1579 return pixelSequence; |
6c73df12ca51
New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1900
diff
changeset
|
1580 } |
6c73df12ca51
New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1900
diff
changeset
|
1581 } |
0 | 1582 } |