Mercurial > hg > orthanc
annotate OrthancServer/UnitTestsSources/ServerIndexTests.cpp @ 5850:1980354c8113 find-refactoring
add level of interest to StatelessDatabaseOperations::LookupAttachment()
author | Sebastien Jodogne <s.jodogne@gmail.com> |
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date | Tue, 29 Oct 2024 15:03:32 +0000 |
parents | 7030fa489669 |
children | ea547160f27e |
rev | line source |
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1 /** |
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2 * Orthanc - A Lightweight, RESTful DICOM Store |
1900 | 3 * Copyright (C) 2012-2016 Sebastien Jodogne, Medical Physics |
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4 * Department, University Hospital of Liege, Belgium |
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5 * Copyright (C) 2017-2023 Osimis S.A., Belgium |
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6 * Copyright (C) 2024-2024 Orthanc Team SRL, Belgium |
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7 * Copyright (C) 2021-2024 Sebastien Jodogne, ICTEAM UCLouvain, Belgium |
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8 * |
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9 * This program is free software: you can redistribute it and/or |
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10 * modify it under the terms of the GNU General Public License as |
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11 * published by the Free Software Foundation, either version 3 of the |
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12 * License, or (at your option) any later version. |
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13 * |
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14 * This program is distributed in the hope that it will be useful, but |
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15 * WITHOUT ANY WARRANTY; without even the implied warranty of |
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16 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU |
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17 * General Public License for more details. |
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18 * |
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19 * You should have received a copy of the GNU General Public License |
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20 * along with this program. If not, see <http://www.gnu.org/licenses/>. |
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21 **/ |
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22 |
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23 |
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24 #include "PrecompiledHeadersUnitTests.h" |
4062 | 25 #include <gtest/gtest.h> |
181 | 26 |
4045 | 27 #include "../../OrthancFramework/Sources/Compatibility.h" |
28 #include "../../OrthancFramework/Sources/FileStorage/FilesystemStorage.h" | |
29 #include "../../OrthancFramework/Sources/FileStorage/MemoryStorageArea.h" | |
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30 #include "../../OrthancFramework/Sources/Images/Image.h" |
4045 | 31 #include "../../OrthancFramework/Sources/Logging.h" |
4062 | 32 |
4045 | 33 #include "../Sources/Database/SQLiteDatabaseWrapper.h" |
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34 #include "../Sources/OrthancConfiguration.h" |
4045 | 35 #include "../Sources/Search/DatabaseLookup.h" |
36 #include "../Sources/ServerContext.h" | |
37 #include "../Sources/ServerToolbox.h" | |
183 | 38 |
181 | 39 #include <ctype.h> |
521 | 40 #include <algorithm> |
181 | 41 |
183 | 42 using namespace Orthanc; |
181 | 43 |
183 | 44 namespace |
45 { | |
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46 class TestDatabaseListener : public IDatabaseListener |
181 | 47 { |
48 public: | |
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49 std::vector<std::string> deletedFiles_; |
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50 std::vector<std::string> deletedResources_; |
183 | 51 std::string ancestorId_; |
52 ResourceType ancestorType_; | |
53 | |
54 void Reset() | |
181 | 55 { |
183 | 56 ancestorId_ = ""; |
57 deletedFiles_.clear(); | |
58 } | |
59 | |
60 virtual void SignalRemainingAncestor(ResourceType type, | |
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61 const std::string& publicId) |
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62 ORTHANC_OVERRIDE |
183 | 63 { |
64 ancestorId_ = publicId; | |
65 ancestorType_ = type; | |
181 | 66 } |
67 | |
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68 virtual void SignalAttachmentDeleted(const FileInfo& info) ORTHANC_OVERRIDE |
181 | 69 { |
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70 const std::string fileUuid = info.GetUuid(); |
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71 deletedFiles_.push_back(fileUuid); |
181 | 72 LOG(INFO) << "A file must be removed: " << fileUuid; |
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73 } |
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74 |
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75 virtual void SignalResourceDeleted(ResourceType type, |
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76 const std::string& publicId) ORTHANC_OVERRIDE |
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77 { |
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78 LOG(INFO) << "Deleted resource " << publicId << " of type " << EnumerationToString(type); |
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79 deletedResources_.push_back(publicId); |
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80 } |
181 | 81 }; |
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82 |
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83 |
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84 class DatabaseWrapperTest : public ::testing::Test |
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85 { |
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86 protected: |
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87 std::unique_ptr<TestDatabaseListener> listener_; |
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88 std::unique_ptr<SQLiteDatabaseWrapper> index_; |
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89 std::unique_ptr<SQLiteDatabaseWrapper::UnitTestsTransaction> transaction_; |
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90 |
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91 public: |
738 | 92 DatabaseWrapperTest() |
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93 { |
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94 } |
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95 |
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96 virtual void SetUp() ORTHANC_OVERRIDE |
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97 { |
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98 listener_.reset(new TestDatabaseListener); |
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99 index_.reset(new SQLiteDatabaseWrapper); |
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100 index_->Open(); |
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101 transaction_.reset(dynamic_cast<SQLiteDatabaseWrapper::UnitTestsTransaction*>( |
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102 index_->StartTransaction(TransactionType_ReadWrite, *listener_))); |
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103 } |
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104 |
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105 virtual void TearDown() ORTHANC_OVERRIDE |
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106 { |
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107 transaction_->Commit(0); |
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108 transaction_.reset(); |
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109 |
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110 index_->Close(); |
738 | 111 index_.reset(NULL); |
112 listener_.reset(NULL); | |
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113 } |
1286 | 114 |
115 void CheckTableRecordCount(uint32_t expected, const char* table) | |
116 { | |
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117 ASSERT_EQ(expected, transaction_->GetTableRecordCount(table)); |
1287 | 118 } |
119 | |
120 void CheckNoParent(int64_t id) | |
121 { | |
122 std::string s; | |
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123 ASSERT_FALSE(transaction_->GetParentPublicId(s, id)); |
1287 | 124 } |
125 | |
126 void CheckParentPublicId(const char* expected, int64_t id) | |
127 { | |
128 std::string s; | |
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129 ASSERT_TRUE(transaction_->GetParentPublicId(s, id)); |
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130 ASSERT_EQ(expected, s); |
1286 | 131 } |
132 | |
1287 | 133 void CheckNoChild(int64_t id) |
134 { | |
135 std::list<std::string> j; | |
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136 transaction_->GetChildren(j, id); |
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137 ASSERT_EQ(0u, j.size()); |
1287 | 138 } |
139 | |
140 void CheckOneChild(const char* expected, int64_t id) | |
141 { | |
142 std::list<std::string> j; | |
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143 transaction_->GetChildren(j, id); |
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144 ASSERT_EQ(1u, j.size()); |
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145 ASSERT_EQ(expected, j.front()); |
1287 | 146 } |
147 | |
148 void CheckTwoChildren(const char* expected1, | |
149 const char* expected2, | |
150 int64_t id) | |
151 { | |
152 std::list<std::string> j; | |
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153 transaction_->GetChildren(j, id); |
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154 ASSERT_EQ(2u, j.size()); |
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155 ASSERT_TRUE((expected1 == j.front() && expected2 == j.back()) || |
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156 (expected1 == j.back() && expected2 == j.front())); |
1287 | 157 } |
1746 | 158 |
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159 void DoLookupIdentifier(std::list<std::string>& result, |
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160 ResourceType level, |
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161 const DicomTag& tag, |
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162 ConstraintType type, |
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163 const std::string& value) |
1746 | 164 { |
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165 assert(ServerToolbox::IsIdentifier(tag, level)); |
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166 |
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167 DicomTagConstraint c(tag, type, value, true, true); |
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168 |
5828 | 169 DatabaseDicomTagConstraints lookup; |
5693 | 170 bool isEquivalent; // unused |
171 lookup.AddConstraint(c.ConvertToDatabaseConstraint(isEquivalent, level, DicomTagType_Identifier)); | |
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172 |
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173 std::set<std::string> noLabel; |
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174 transaction_->ApplyLookupResources(result, NULL, lookup, level, noLabel, LabelsConstraint_All, 0 /* no limit */); |
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175 } |
1746 | 176 |
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177 void DoLookupIdentifier2(std::list<std::string>& result, |
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178 ResourceType level, |
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179 const DicomTag& tag, |
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180 ConstraintType type1, |
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181 const std::string& value1, |
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182 ConstraintType type2, |
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183 const std::string& value2) |
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184 { |
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185 assert(ServerToolbox::IsIdentifier(tag, level)); |
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186 |
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187 DicomTagConstraint c1(tag, type1, value1, true, true); |
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188 DicomTagConstraint c2(tag, type2, value2, true, true); |
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189 |
5828 | 190 DatabaseDicomTagConstraints lookup; |
5693 | 191 bool isEquivalent; // unused |
192 lookup.AddConstraint(c1.ConvertToDatabaseConstraint(isEquivalent, level, DicomTagType_Identifier)); | |
193 lookup.AddConstraint(c2.ConvertToDatabaseConstraint(isEquivalent, level, DicomTagType_Identifier)); | |
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194 |
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195 std::set<std::string> noLabel; |
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196 transaction_->ApplyLookupResources(result, NULL, lookup, level, noLabel, LabelsConstraint_All, 0 /* no limit */); |
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197 } |
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198 }; |
181 | 199 } |
200 | |
201 | |
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202 TEST_F(DatabaseWrapperTest, Simple) |
181 | 203 { |
204 int64_t a[] = { | |
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205 transaction_->CreateResource("a", ResourceType_Patient), // 0 |
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206 transaction_->CreateResource("b", ResourceType_Study), // 1 |
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207 transaction_->CreateResource("c", ResourceType_Series), // 2 |
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208 transaction_->CreateResource("d", ResourceType_Instance), // 3 |
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209 transaction_->CreateResource("e", ResourceType_Instance), // 4 |
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210 transaction_->CreateResource("f", ResourceType_Instance), // 5 |
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211 transaction_->CreateResource("g", ResourceType_Study) // 6 |
181 | 212 }; |
213 | |
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214 ASSERT_EQ("a", transaction_->GetPublicId(a[0])); |
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215 ASSERT_EQ("b", transaction_->GetPublicId(a[1])); |
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216 ASSERT_EQ("c", transaction_->GetPublicId(a[2])); |
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217 ASSERT_EQ("d", transaction_->GetPublicId(a[3])); |
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218 ASSERT_EQ("e", transaction_->GetPublicId(a[4])); |
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219 ASSERT_EQ("f", transaction_->GetPublicId(a[5])); |
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220 ASSERT_EQ("g", transaction_->GetPublicId(a[6])); |
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221 |
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222 ASSERT_EQ(ResourceType_Patient, transaction_->GetResourceType(a[0])); |
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223 ASSERT_EQ(ResourceType_Study, transaction_->GetResourceType(a[1])); |
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224 ASSERT_EQ(ResourceType_Series, transaction_->GetResourceType(a[2])); |
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225 ASSERT_EQ(ResourceType_Instance, transaction_->GetResourceType(a[3])); |
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226 ASSERT_EQ(ResourceType_Instance, transaction_->GetResourceType(a[4])); |
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227 ASSERT_EQ(ResourceType_Instance, transaction_->GetResourceType(a[5])); |
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228 ASSERT_EQ(ResourceType_Study, transaction_->GetResourceType(a[6])); |
304 | 229 |
190 | 230 { |
1241 | 231 std::list<std::string> t; |
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232 transaction_->GetAllPublicIds(t, ResourceType_Patient); |
190 | 233 |
232
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234 ASSERT_EQ(1u, t.size()); |
1241 | 235 ASSERT_EQ("a", t.front()); |
190 | 236 |
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237 transaction_->GetAllPublicIds(t, ResourceType_Series); |
232
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238 ASSERT_EQ(1u, t.size()); |
1241 | 239 ASSERT_EQ("c", t.front()); |
190 | 240 |
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241 transaction_->GetAllPublicIds(t, ResourceType_Study); |
232
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242 ASSERT_EQ(2u, t.size()); |
190 | 243 |
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244 transaction_->GetAllPublicIds(t, ResourceType_Instance); |
232
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245 ASSERT_EQ(3u, t.size()); |
190 | 246 } |
247 | |
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248 transaction_->SetGlobalProperty(GlobalProperty_FlushSleep, true, "World"); |
181 | 249 |
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250 transaction_->AttachChild(a[0], a[1]); |
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251 transaction_->AttachChild(a[1], a[2]); |
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252 transaction_->AttachChild(a[2], a[3]); |
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253 transaction_->AttachChild(a[2], a[4]); |
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254 transaction_->AttachChild(a[6], a[5]); |
182 | 255 |
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256 int64_t parent; |
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257 ASSERT_FALSE(transaction_->LookupParent(parent, a[0])); |
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258 ASSERT_TRUE(transaction_->LookupParent(parent, a[1])); ASSERT_EQ(a[0], parent); |
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259 ASSERT_TRUE(transaction_->LookupParent(parent, a[2])); ASSERT_EQ(a[1], parent); |
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260 ASSERT_TRUE(transaction_->LookupParent(parent, a[3])); ASSERT_EQ(a[2], parent); |
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261 ASSERT_TRUE(transaction_->LookupParent(parent, a[4])); ASSERT_EQ(a[2], parent); |
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262 ASSERT_TRUE(transaction_->LookupParent(parent, a[5])); ASSERT_EQ(a[6], parent); |
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263 ASSERT_FALSE(transaction_->LookupParent(parent, a[6])); |
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264 |
182 | 265 std::string s; |
1286 | 266 |
1287 | 267 CheckNoParent(a[0]); |
268 CheckNoParent(a[6]); | |
269 CheckParentPublicId("a", a[1]); | |
270 CheckParentPublicId("b", a[2]); | |
271 CheckParentPublicId("c", a[3]); | |
272 CheckParentPublicId("c", a[4]); | |
273 CheckParentPublicId("g", a[5]); | |
182 | 274 |
185 | 275 std::list<std::string> l; |
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276 transaction_->GetChildrenPublicId(l, a[0]); ASSERT_EQ(1u, l.size()); ASSERT_EQ("b", l.front()); |
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277 transaction_->GetChildrenPublicId(l, a[1]); ASSERT_EQ(1u, l.size()); ASSERT_EQ("c", l.front()); |
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278 transaction_->GetChildrenPublicId(l, a[3]); ASSERT_EQ(0u, l.size()); |
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279 transaction_->GetChildrenPublicId(l, a[4]); ASSERT_EQ(0u, l.size()); |
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280 transaction_->GetChildrenPublicId(l, a[5]); ASSERT_EQ(0u, l.size()); |
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281 transaction_->GetChildrenPublicId(l, a[6]); ASSERT_EQ(1u, l.size()); ASSERT_EQ("f", l.front()); |
182 | 282 |
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283 transaction_->GetChildrenPublicId(l, a[2]); ASSERT_EQ(2u, l.size()); |
182 | 284 if (l.front() == "d") |
285 { | |
286 ASSERT_EQ("e", l.back()); | |
287 } | |
288 else | |
289 { | |
290 ASSERT_EQ("d", l.back()); | |
291 ASSERT_EQ("e", l.front()); | |
292 } | |
293 | |
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294 std::map<MetadataType, std::string> md; |
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295 transaction_->GetAllMetadata(md, a[4]); |
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296 ASSERT_EQ(0u, md.size()); |
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297 |
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298 transaction_->AddAttachment(a[4], FileInfo("my json file", FileContentType_DicomAsJson, 42, "md5", |
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299 CompressionType_ZlibWithSize, 21, "compressedMD5"), 42); |
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300 transaction_->AddAttachment(a[4], FileInfo("my dicom file", FileContentType_Dicom, 42, "md5"), 43); |
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301 transaction_->AddAttachment(a[6], FileInfo("world", FileContentType_Dicom, 44, "md5"), 44); |
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302 |
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303 // TODO - REVISIONS - "42" is revision number, that is not currently stored (*) |
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304 transaction_->SetMetadata(a[4], MetadataType_RemoteAet, "PINNACLE", 42); |
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305 |
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306 transaction_->GetAllMetadata(md, a[4]); |
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307 ASSERT_EQ(1u, md.size()); |
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308 ASSERT_EQ("PINNACLE", md[MetadataType_RemoteAet]); |
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309 transaction_->SetMetadata(a[4], MetadataType_ModifiedFrom, "TUTU", 10); |
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310 transaction_->GetAllMetadata(md, a[4]); |
438 | 311 ASSERT_EQ(2u, md.size()); |
1030 | 312 |
313 std::map<MetadataType, std::string> md2; | |
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314 transaction_->GetAllMetadata(md2, a[4]); |
1030 | 315 ASSERT_EQ(2u, md2.size()); |
316 ASSERT_EQ("TUTU", md2[MetadataType_ModifiedFrom]); | |
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317 ASSERT_EQ("PINNACLE", md2[MetadataType_RemoteAet]); |
1030 | 318 |
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319 transaction_->DeleteMetadata(a[4], MetadataType_ModifiedFrom); |
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320 transaction_->GetAllMetadata(md, a[4]); |
438 | 321 ASSERT_EQ(1u, md.size()); |
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322 ASSERT_EQ("PINNACLE", md[MetadataType_RemoteAet]); |
182 | 323 |
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324 transaction_->GetAllMetadata(md2, a[4]); |
1030 | 325 ASSERT_EQ(1u, md2.size()); |
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326 ASSERT_EQ("PINNACLE", md2[MetadataType_RemoteAet]); |
1030 | 327 |
328 | |
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329 ASSERT_EQ(21u + 42u + 44u, transaction_->GetTotalCompressedSize()); |
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330 ASSERT_EQ(42u + 42u + 44u, transaction_->GetTotalUncompressedSize()); |
181 | 331 |
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332 transaction_->SetMainDicomTag(a[3], DicomTag(0x0010, 0x0010), "PatientName"); |
181 | 333 |
334 int64_t b; | |
335 ResourceType t; | |
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336 ASSERT_TRUE(transaction_->LookupResource(b, t, "g")); |
181 | 337 ASSERT_EQ(7, b); |
338 ASSERT_EQ(ResourceType_Study, t); | |
339 | |
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340 int64_t revision; |
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341 ASSERT_TRUE(transaction_->LookupMetadata(s, revision, a[4], MetadataType_RemoteAet)); |
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342 ASSERT_EQ(0, revision); // "0" instead of "42" because of (*) |
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343 ASSERT_FALSE(transaction_->LookupMetadata(s, revision, a[4], MetadataType_Instance_IndexInSeries)); |
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344 ASSERT_EQ(0, revision); |
181 | 345 ASSERT_EQ("PINNACLE", s); |
1238 | 346 |
347 std::string u; | |
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348 ASSERT_TRUE(transaction_->LookupMetadata(u, revision, a[4], MetadataType_RemoteAet)); |
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349 ASSERT_EQ(0, revision); |
1238 | 350 ASSERT_EQ("PINNACLE", u); |
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351 ASSERT_FALSE(transaction_->LookupMetadata(u, revision, a[4], MetadataType_Instance_IndexInSeries)); |
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352 ASSERT_EQ(0, revision); |
181 | 353 |
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354 ASSERT_TRUE(transaction_->LookupGlobalProperty(s, GlobalProperty_FlushSleep, true)); |
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355 ASSERT_FALSE(transaction_->LookupGlobalProperty(s, static_cast<GlobalProperty>(42), true)); |
181 | 356 ASSERT_EQ("World", s); |
357 | |
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358 FileInfo att; |
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359 ASSERT_TRUE(transaction_->LookupAttachment(att, revision, a[4], FileContentType_DicomAsJson)); |
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360 ASSERT_EQ(0, revision); // "0" instead of "42" because of (*) |
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361 ASSERT_EQ("my json file", att.GetUuid()); |
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362 ASSERT_EQ(21u, att.GetCompressedSize()); |
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363 ASSERT_EQ("md5", att.GetUncompressedMD5()); |
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364 ASSERT_EQ("compressedMD5", att.GetCompressedMD5()); |
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365 ASSERT_EQ(42u, att.GetUncompressedSize()); |
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366 ASSERT_EQ(CompressionType_ZlibWithSize, att.GetCompressionType()); |
181 | 367 |
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368 ASSERT_TRUE(transaction_->LookupAttachment(att, revision, a[6], FileContentType_Dicom)); |
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369 ASSERT_EQ(0, revision); // "0" instead of "42" because of (*) |
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370 ASSERT_EQ("world", att.GetUuid()); |
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371 ASSERT_EQ(44u, att.GetCompressedSize()); |
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372 ASSERT_EQ("md5", att.GetUncompressedMD5()); |
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373 ASSERT_EQ("md5", att.GetCompressedMD5()); |
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374 ASSERT_EQ(44u, att.GetUncompressedSize()); |
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375 ASSERT_EQ(CompressionType_None, att.GetCompressionType()); |
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376 |
738 | 377 ASSERT_EQ(0u, listener_->deletedFiles_.size()); |
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378 ASSERT_EQ(0u, listener_->deletedResources_.size()); |
1286 | 379 |
380 CheckTableRecordCount(7, "Resources"); | |
381 CheckTableRecordCount(3, "AttachedFiles"); | |
382 CheckTableRecordCount(1, "Metadata"); | |
383 CheckTableRecordCount(1, "MainDicomTags"); | |
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384 |
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385 transaction_->DeleteResource(a[0]); |
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386 ASSERT_EQ(5u, listener_->deletedResources_.size()); |
738 | 387 ASSERT_EQ(2u, listener_->deletedFiles_.size()); |
388 ASSERT_FALSE(std::find(listener_->deletedFiles_.begin(), | |
389 listener_->deletedFiles_.end(), | |
390 "my json file") == listener_->deletedFiles_.end()); | |
391 ASSERT_FALSE(std::find(listener_->deletedFiles_.begin(), | |
392 listener_->deletedFiles_.end(), | |
393 "my dicom file") == listener_->deletedFiles_.end()); | |
183 | 394 |
1286 | 395 CheckTableRecordCount(2, "Resources"); |
396 CheckTableRecordCount(0, "Metadata"); | |
397 CheckTableRecordCount(1, "AttachedFiles"); | |
398 CheckTableRecordCount(0, "MainDicomTags"); | |
399 | |
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400 transaction_->DeleteResource(a[5]); |
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401 ASSERT_EQ(7u, listener_->deletedResources_.size()); |
1286 | 402 |
403 CheckTableRecordCount(0, "Resources"); | |
404 CheckTableRecordCount(0, "AttachedFiles"); | |
3121 | 405 CheckTableRecordCount(3, "GlobalProperties"); |
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406 |
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407 std::string tmp; |
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408 ASSERT_TRUE(transaction_->LookupGlobalProperty(tmp, GlobalProperty_DatabaseSchemaVersion, true)); |
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409 ASSERT_EQ("6", tmp); |
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410 ASSERT_TRUE(transaction_->LookupGlobalProperty(tmp, GlobalProperty_FlushSleep, true)); |
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411 ASSERT_EQ("World", tmp); |
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412 ASSERT_TRUE(transaction_->LookupGlobalProperty(tmp, GlobalProperty_GetTotalSizeIsFast, true)); |
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413 ASSERT_EQ("1", tmp); |
183 | 414 |
738 | 415 ASSERT_EQ(3u, listener_->deletedFiles_.size()); |
416 ASSERT_FALSE(std::find(listener_->deletedFiles_.begin(), | |
417 listener_->deletedFiles_.end(), | |
418 "world") == listener_->deletedFiles_.end()); | |
183 | 419 } |
420 | |
421 | |
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422 TEST_F(DatabaseWrapperTest, Upward) |
183 | 423 { |
424 int64_t a[] = { | |
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425 transaction_->CreateResource("a", ResourceType_Patient), // 0 |
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426 transaction_->CreateResource("b", ResourceType_Study), // 1 |
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427 transaction_->CreateResource("c", ResourceType_Series), // 2 |
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428 transaction_->CreateResource("d", ResourceType_Instance), // 3 |
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429 transaction_->CreateResource("e", ResourceType_Instance), // 4 |
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430 transaction_->CreateResource("f", ResourceType_Study), // 5 |
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431 transaction_->CreateResource("g", ResourceType_Series), // 6 |
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432 transaction_->CreateResource("h", ResourceType_Series) // 7 |
183 | 433 }; |
434 | |
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435 transaction_->AttachChild(a[0], a[1]); |
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436 transaction_->AttachChild(a[1], a[2]); |
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437 transaction_->AttachChild(a[2], a[3]); |
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438 transaction_->AttachChild(a[2], a[4]); |
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439 transaction_->AttachChild(a[1], a[6]); |
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440 transaction_->AttachChild(a[0], a[5]); |
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441 transaction_->AttachChild(a[5], a[7]); |
183 | 442 |
1287 | 443 CheckTwoChildren("b", "f", a[0]); |
444 CheckTwoChildren("c", "g", a[1]); | |
445 CheckTwoChildren("d", "e", a[2]); | |
446 CheckNoChild(a[3]); | |
447 CheckNoChild(a[4]); | |
448 CheckOneChild("h", a[5]); | |
449 CheckNoChild(a[6]); | |
450 CheckNoChild(a[7]); | |
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451 |
738 | 452 listener_->Reset(); |
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453 transaction_->DeleteResource(a[3]); |
738 | 454 ASSERT_EQ("c", listener_->ancestorId_); |
455 ASSERT_EQ(ResourceType_Series, listener_->ancestorType_); | |
183 | 456 |
738 | 457 listener_->Reset(); |
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458 transaction_->DeleteResource(a[4]); |
738 | 459 ASSERT_EQ("b", listener_->ancestorId_); |
460 ASSERT_EQ(ResourceType_Study, listener_->ancestorType_); | |
183 | 461 |
738 | 462 listener_->Reset(); |
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463 transaction_->DeleteResource(a[7]); |
738 | 464 ASSERT_EQ("a", listener_->ancestorId_); |
465 ASSERT_EQ(ResourceType_Patient, listener_->ancestorType_); | |
183 | 466 |
738 | 467 listener_->Reset(); |
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468 transaction_->DeleteResource(a[6]); |
738 | 469 ASSERT_EQ("", listener_->ancestorId_); // No more ancestor |
181 | 470 } |
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471 |
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472 |
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473 TEST_F(DatabaseWrapperTest, PatientRecycling) |
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474 { |
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475 std::vector<int64_t> patients; |
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476 for (int i = 0; i < 10; i++) |
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477 { |
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478 std::string p = "Patient " + boost::lexical_cast<std::string>(i); |
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479 patients.push_back(transaction_->CreateResource(p, ResourceType_Patient)); |
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480 transaction_->AddAttachment(patients[i], FileInfo(p, FileContentType_Dicom, i + 10, |
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481 "md5-" + boost::lexical_cast<std::string>(i)), 42); |
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482 ASSERT_FALSE(transaction_->IsProtectedPatient(patients[i])); |
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483 } |
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484 |
1286 | 485 CheckTableRecordCount(10u, "Resources"); |
486 CheckTableRecordCount(10u, "PatientRecyclingOrder"); | |
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487 |
738 | 488 listener_->Reset(); |
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489 ASSERT_EQ(0u, listener_->deletedResources_.size()); |
262
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490 |
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491 transaction_->DeleteResource(patients[5]); |
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492 transaction_->DeleteResource(patients[0]); |
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493 ASSERT_EQ(2u, listener_->deletedResources_.size()); |
1286 | 494 |
495 CheckTableRecordCount(8u, "Resources"); | |
496 CheckTableRecordCount(8u, "PatientRecyclingOrder"); | |
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497 |
738 | 498 ASSERT_EQ(2u, listener_->deletedFiles_.size()); |
499 ASSERT_EQ("Patient 5", listener_->deletedFiles_[0]); | |
500 ASSERT_EQ("Patient 0", listener_->deletedFiles_[1]); | |
262
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501 |
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502 int64_t p; |
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503 ASSERT_TRUE(transaction_->SelectPatientToRecycle(p)); ASSERT_EQ(p, patients[1]); |
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504 transaction_->DeleteResource(p); |
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505 ASSERT_EQ(3u, listener_->deletedResources_.size()); |
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506 ASSERT_TRUE(transaction_->SelectPatientToRecycle(p)); ASSERT_EQ(p, patients[2]); |
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507 transaction_->DeleteResource(p); |
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508 ASSERT_EQ(4u, listener_->deletedResources_.size()); |
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509 ASSERT_TRUE(transaction_->SelectPatientToRecycle(p)); ASSERT_EQ(p, patients[3]); |
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510 transaction_->DeleteResource(p); |
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511 ASSERT_EQ(5u, listener_->deletedResources_.size()); |
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512 ASSERT_TRUE(transaction_->SelectPatientToRecycle(p)); ASSERT_EQ(p, patients[4]); |
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513 transaction_->DeleteResource(p); |
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514 ASSERT_EQ(6u, listener_->deletedResources_.size()); |
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515 ASSERT_TRUE(transaction_->SelectPatientToRecycle(p)); ASSERT_EQ(p, patients[6]); |
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516 transaction_->DeleteResource(p); |
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517 transaction_->DeleteResource(patients[8]); |
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518 ASSERT_EQ(8u, listener_->deletedResources_.size()); |
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519 ASSERT_TRUE(transaction_->SelectPatientToRecycle(p)); ASSERT_EQ(p, patients[7]); |
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520 transaction_->DeleteResource(p); |
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521 ASSERT_EQ(9u, listener_->deletedResources_.size()); |
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522 ASSERT_TRUE(transaction_->SelectPatientToRecycle(p)); ASSERT_EQ(p, patients[9]); |
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523 transaction_->DeleteResource(p); |
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524 ASSERT_FALSE(transaction_->SelectPatientToRecycle(p)); |
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525 ASSERT_EQ(10u, listener_->deletedResources_.size()); |
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526 |
738 | 527 ASSERT_EQ(10u, listener_->deletedFiles_.size()); |
1286 | 528 |
529 CheckTableRecordCount(0, "Resources"); | |
530 CheckTableRecordCount(0, "PatientRecyclingOrder"); | |
262
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531 } |
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532 |
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533 |
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534 TEST_F(DatabaseWrapperTest, PatientProtection) |
262
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535 { |
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536 std::vector<int64_t> patients; |
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537 for (int i = 0; i < 5; i++) |
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538 { |
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539 std::string p = "Patient " + boost::lexical_cast<std::string>(i); |
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540 patients.push_back(transaction_->CreateResource(p, ResourceType_Patient)); |
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541 transaction_->AddAttachment(patients[i], FileInfo(p, FileContentType_Dicom, i + 10, |
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542 "md5-" + boost::lexical_cast<std::string>(i)), 42); |
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543 ASSERT_FALSE(transaction_->IsProtectedPatient(patients[i])); |
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544 } |
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545 |
1286 | 546 CheckTableRecordCount(5, "Resources"); |
547 CheckTableRecordCount(5, "PatientRecyclingOrder"); | |
262
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548 |
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549 ASSERT_FALSE(transaction_->IsProtectedPatient(patients[2])); |
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550 transaction_->SetProtectedPatient(patients[2], true); |
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551 ASSERT_TRUE(transaction_->IsProtectedPatient(patients[2])); |
1286 | 552 CheckTableRecordCount(5, "Resources"); |
553 CheckTableRecordCount(4, "PatientRecyclingOrder"); | |
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554 |
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555 transaction_->SetProtectedPatient(patients[2], true); |
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556 ASSERT_TRUE(transaction_->IsProtectedPatient(patients[2])); |
1286 | 557 CheckTableRecordCount(4, "PatientRecyclingOrder"); |
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558 transaction_->SetProtectedPatient(patients[2], false); |
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559 ASSERT_FALSE(transaction_->IsProtectedPatient(patients[2])); |
1286 | 560 CheckTableRecordCount(5, "PatientRecyclingOrder"); |
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561 transaction_->SetProtectedPatient(patients[2], false); |
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562 ASSERT_FALSE(transaction_->IsProtectedPatient(patients[2])); |
1286 | 563 CheckTableRecordCount(5, "PatientRecyclingOrder"); |
564 CheckTableRecordCount(5, "Resources"); | |
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565 transaction_->SetProtectedPatient(patients[2], true); |
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566 ASSERT_TRUE(transaction_->IsProtectedPatient(patients[2])); |
1286 | 567 CheckTableRecordCount(4, "PatientRecyclingOrder"); |
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568 transaction_->SetProtectedPatient(patients[2], false); |
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569 ASSERT_FALSE(transaction_->IsProtectedPatient(patients[2])); |
1286 | 570 CheckTableRecordCount(5, "PatientRecyclingOrder"); |
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571 transaction_->SetProtectedPatient(patients[3], true); |
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572 ASSERT_TRUE(transaction_->IsProtectedPatient(patients[3])); |
1286 | 573 CheckTableRecordCount(4, "PatientRecyclingOrder"); |
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574 |
1286 | 575 CheckTableRecordCount(5, "Resources"); |
738 | 576 ASSERT_EQ(0u, listener_->deletedFiles_.size()); |
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577 |
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578 // Unprotecting a patient puts it at the last position in the recycling queue |
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579 int64_t p; |
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580 ASSERT_EQ(0u, listener_->deletedResources_.size()); |
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581 ASSERT_TRUE(transaction_->SelectPatientToRecycle(p)); ASSERT_EQ(p, patients[0]); |
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582 transaction_->DeleteResource(p); |
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583 ASSERT_EQ(1u, listener_->deletedResources_.size()); |
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584 ASSERT_TRUE(transaction_->SelectPatientToRecycle(p, patients[1])); ASSERT_EQ(p, patients[4]); |
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585 ASSERT_TRUE(transaction_->SelectPatientToRecycle(p)); ASSERT_EQ(p, patients[1]); |
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586 transaction_->DeleteResource(p); |
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587 ASSERT_EQ(2u, listener_->deletedResources_.size()); |
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588 ASSERT_TRUE(transaction_->SelectPatientToRecycle(p)); ASSERT_EQ(p, patients[4]); |
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589 transaction_->DeleteResource(p); |
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590 ASSERT_EQ(3u, listener_->deletedResources_.size()); |
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591 ASSERT_FALSE(transaction_->SelectPatientToRecycle(p, patients[2])); |
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592 ASSERT_TRUE(transaction_->SelectPatientToRecycle(p)); ASSERT_EQ(p, patients[2]); |
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593 transaction_->DeleteResource(p); |
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594 ASSERT_EQ(4u, listener_->deletedResources_.size()); |
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595 // "patients[3]" is still protected |
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596 ASSERT_FALSE(transaction_->SelectPatientToRecycle(p)); |
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597 |
738 | 598 ASSERT_EQ(4u, listener_->deletedFiles_.size()); |
1286 | 599 CheckTableRecordCount(1, "Resources"); |
600 CheckTableRecordCount(0, "PatientRecyclingOrder"); | |
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601 |
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602 transaction_->SetProtectedPatient(patients[3], false); |
1286 | 603 CheckTableRecordCount(1, "PatientRecyclingOrder"); |
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604 ASSERT_FALSE(transaction_->SelectPatientToRecycle(p, patients[3])); |
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605 ASSERT_TRUE(transaction_->SelectPatientToRecycle(p, patients[2])); |
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606 ASSERT_TRUE(transaction_->SelectPatientToRecycle(p)); ASSERT_EQ(p, patients[3]); |
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607 transaction_->DeleteResource(p); |
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608 ASSERT_EQ(5u, listener_->deletedResources_.size()); |
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609 |
738 | 610 ASSERT_EQ(5u, listener_->deletedFiles_.size()); |
1286 | 611 CheckTableRecordCount(0, "Resources"); |
612 CheckTableRecordCount(0, "PatientRecyclingOrder"); | |
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613 } |
310 | 614 |
615 | |
1237 | 616 TEST(ServerIndex, Sequence) |
310 | 617 { |
1237 | 618 const std::string path = "UnitTestsStorage"; |
619 | |
2140 | 620 SystemToolbox::RemoveFile(path + "/index"); |
1237 | 621 FilesystemStorage storage(path); |
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622 SQLiteDatabaseWrapper db; // The SQLite DB is in memory |
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623 db.Open(); |
5785 | 624 ServerContext context(db, storage, true /* running unit tests */, 10, false /* readonly */); |
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625 context.SetupJobsEngine(true, false); |
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626 |
1237 | 627 ServerIndex& index = context.GetIndex(); |
628 | |
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629 ASSERT_EQ(1u, index.IncrementGlobalSequence(GlobalProperty_AnonymizationSequence, true)); |
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630 ASSERT_EQ(2u, index.IncrementGlobalSequence(GlobalProperty_AnonymizationSequence, true)); |
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631 ASSERT_EQ(3u, index.IncrementGlobalSequence(GlobalProperty_AnonymizationSequence, true)); |
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632 ASSERT_EQ(4u, index.IncrementGlobalSequence(GlobalProperty_AnonymizationSequence, true)); |
1453
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633 |
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634 context.Stop(); |
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635 db.Close(); |
310 | 636 } |
521 | 637 |
638 | |
3081
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simplification of unit tests
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parents:
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639 TEST_F(DatabaseWrapperTest, LookupIdentifier) |
521 | 640 { |
641 int64_t a[] = { | |
4591
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moving all accesses to databases from IDatabaseWrapper to ITransaction
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changeset
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642 transaction_->CreateResource("a", ResourceType_Study), // 0 |
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643 transaction_->CreateResource("b", ResourceType_Study), // 1 |
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644 transaction_->CreateResource("c", ResourceType_Study), // 2 |
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645 transaction_->CreateResource("d", ResourceType_Series) // 3 |
521 | 646 }; |
647 | |
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648 transaction_->SetIdentifierTag(a[0], DICOM_TAG_STUDY_INSTANCE_UID, "0"); |
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649 transaction_->SetIdentifierTag(a[1], DICOM_TAG_STUDY_INSTANCE_UID, "1"); |
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650 transaction_->SetIdentifierTag(a[2], DICOM_TAG_STUDY_INSTANCE_UID, "0"); |
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changeset
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651 transaction_->SetIdentifierTag(a[3], DICOM_TAG_SERIES_INSTANCE_UID, "0"); |
521 | 652 |
3075
ead8576a02ef
IDatabaseWrapper::ApplyLookupResources now returns lists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
653 std::list<std::string> s; |
521 | 654 |
3036
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moving LookupIdentifierQuery to the graveyard
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parents:
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diff
changeset
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655 DoLookupIdentifier(s, ResourceType_Study, DICOM_TAG_STUDY_INSTANCE_UID, ConstraintType_Equal, "0"); |
521 | 656 ASSERT_EQ(2u, s.size()); |
1746 | 657 ASSERT_TRUE(std::find(s.begin(), s.end(), "a") != s.end()); |
658 ASSERT_TRUE(std::find(s.begin(), s.end(), "c") != s.end()); | |
521 | 659 |
3036
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changeset
|
660 DoLookupIdentifier(s, ResourceType_Series, DICOM_TAG_SERIES_INSTANCE_UID, ConstraintType_Equal, "0"); |
1718
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changeset
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661 ASSERT_EQ(1u, s.size()); |
1746 | 662 ASSERT_TRUE(std::find(s.begin(), s.end(), "d") != s.end()); |
521 | 663 |
3036
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diff
changeset
|
664 DoLookupIdentifier(s, ResourceType_Study, DICOM_TAG_STUDY_INSTANCE_UID, ConstraintType_Equal, "1"); |
521 | 665 ASSERT_EQ(1u, s.size()); |
1746 | 666 ASSERT_TRUE(std::find(s.begin(), s.end(), "b") != s.end()); |
521 | 667 |
3036
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changeset
|
668 DoLookupIdentifier(s, ResourceType_Study, DICOM_TAG_STUDY_INSTANCE_UID, ConstraintType_Equal, "1"); |
521 | 669 ASSERT_EQ(1u, s.size()); |
1746 | 670 ASSERT_TRUE(std::find(s.begin(), s.end(), "b") != s.end()); |
521 | 671 |
3036
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changeset
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672 DoLookupIdentifier(s, ResourceType_Series, DICOM_TAG_SERIES_INSTANCE_UID, ConstraintType_Equal, "1"); |
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673 ASSERT_EQ(0u, s.size()); |
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changeset
|
674 |
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changeset
|
675 DoLookupIdentifier(s, ResourceType_Study, DICOM_TAG_STUDY_INSTANCE_UID, ConstraintType_GreaterOrEqual, "0"); |
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changeset
|
676 ASSERT_EQ(3u, s.size()); |
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changeset
|
677 |
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moving LookupIdentifierQuery to the graveyard
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diff
changeset
|
678 DoLookupIdentifier(s, ResourceType_Study, DICOM_TAG_STUDY_INSTANCE_UID, ConstraintType_GreaterOrEqual, "1"); |
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changeset
|
679 ASSERT_EQ(1u, s.size()); |
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changeset
|
680 |
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moving LookupIdentifierQuery to the graveyard
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diff
changeset
|
681 DoLookupIdentifier(s, ResourceType_Study, DICOM_TAG_STUDY_INSTANCE_UID, ConstraintType_GreaterOrEqual, "2"); |
1718
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changeset
|
682 ASSERT_EQ(0u, s.size()); |
521 | 683 |
3036
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parents:
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diff
changeset
|
684 DoLookupIdentifier2(s, ResourceType_Study, DICOM_TAG_STUDY_INSTANCE_UID, |
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diff
changeset
|
685 ConstraintType_GreaterOrEqual, "0", ConstraintType_SmallerOrEqual, "0"); |
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moving LookupIdentifierQuery to the graveyard
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parents:
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diff
changeset
|
686 ASSERT_EQ(2u, s.size()); |
1746 | 687 |
3036
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moving LookupIdentifierQuery to the graveyard
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parents:
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diff
changeset
|
688 DoLookupIdentifier2(s, ResourceType_Study, DICOM_TAG_STUDY_INSTANCE_UID, |
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diff
changeset
|
689 ConstraintType_GreaterOrEqual, "1", ConstraintType_SmallerOrEqual, "1"); |
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parents:
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diff
changeset
|
690 ASSERT_EQ(1u, s.size()); |
1746 | 691 |
3036
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parents:
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diff
changeset
|
692 DoLookupIdentifier2(s, ResourceType_Study, DICOM_TAG_STUDY_INSTANCE_UID, |
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parents:
3019
diff
changeset
|
693 ConstraintType_GreaterOrEqual, "0", ConstraintType_SmallerOrEqual, "1"); |
8fd203510d8b
moving LookupIdentifierQuery to the graveyard
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parents:
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diff
changeset
|
694 ASSERT_EQ(3u, s.size()); |
562
f64e3838d6e1
refactoring enumerations
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parents:
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diff
changeset
|
695 } |
705 | 696 |
697 | |
713
9d1973813d8b
test attachment recycling
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parents:
711
diff
changeset
|
698 TEST(ServerIndex, AttachmentRecycling) |
705 | 699 { |
803
4689e400e0fa
directory to store the results of the unit tests
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
738
diff
changeset
|
700 const std::string path = "UnitTestsStorage"; |
1124
790ff7a5b3bf
IStorageArea abstraction
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1030
diff
changeset
|
701 |
2140 | 702 SystemToolbox::RemoveFile(path + "/index"); |
1124
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IStorageArea abstraction
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
703 FilesystemStorage storage(path); |
3017
517fc4767ae0
renamed class DatabaseWrapper as SQLiteDatabaseWrapper
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3001
diff
changeset
|
704 SQLiteDatabaseWrapper db; // The SQLite DB is in memory |
1672
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sample database plugin now working
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
705 db.Open(); |
5785 | 706 ServerContext context(db, storage, true /* running unit tests */, 10, false /* readonly */); |
2815
925d8dc03a23
unserialization of jobs from plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
707 context.SetupJobsEngine(true, false); |
705 | 708 ServerIndex& index = context.GetIndex(); |
707
203157cb4fde
unit tests of httpclient
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
706
diff
changeset
|
709 |
706 | 710 index.SetMaximumStorageSize(10); |
711 | |
3174
8ea7c4546c3a
primitives to collect metrics in Orthanc
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3121
diff
changeset
|
712 uint64_t diskSize, uncompressedSize, countPatients, countStudies, countSeries, countInstances; |
8ea7c4546c3a
primitives to collect metrics in Orthanc
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
713 index.GetGlobalStatistics(diskSize, uncompressedSize, countPatients, |
8ea7c4546c3a
primitives to collect metrics in Orthanc
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3121
diff
changeset
|
714 countStudies, countSeries, countInstances); |
8ea7c4546c3a
primitives to collect metrics in Orthanc
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3121
diff
changeset
|
715 |
8ea7c4546c3a
primitives to collect metrics in Orthanc
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
716 ASSERT_EQ(0u, countPatients); |
8ea7c4546c3a
primitives to collect metrics in Orthanc
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diff
changeset
|
717 ASSERT_EQ(0u, diskSize); |
705 | 718 |
719 ServerIndex::Attachments attachments; | |
720 | |
713
9d1973813d8b
test attachment recycling
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parents:
711
diff
changeset
|
721 std::vector<std::string> ids; |
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test attachment recycling
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parents:
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diff
changeset
|
722 for (int i = 0; i < 10; i++) |
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test attachment recycling
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diff
changeset
|
723 { |
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
724 std::string id = boost::lexical_cast<std::string>(i); |
9d1973813d8b
test attachment recycling
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parents:
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diff
changeset
|
725 DicomMap instance; |
2007
655489d9165d
DicomMap::ParseDicomMetaInformation()
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parents:
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diff
changeset
|
726 instance.SetValue(DICOM_TAG_PATIENT_ID, "patient-" + id, false); |
655489d9165d
DicomMap::ParseDicomMetaInformation()
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diff
changeset
|
727 instance.SetValue(DICOM_TAG_STUDY_INSTANCE_UID, "study-" + id, false); |
655489d9165d
DicomMap::ParseDicomMetaInformation()
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parents:
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diff
changeset
|
728 instance.SetValue(DICOM_TAG_SERIES_INSTANCE_UID, "series-" + id, false); |
655489d9165d
DicomMap::ParseDicomMetaInformation()
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1971
diff
changeset
|
729 instance.SetValue(DICOM_TAG_SOP_INSTANCE_UID, "instance-" + id, false); |
2208
90ea60bee5ff
New metadata automatically computed at the instance level: "SopClassUid"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2190
diff
changeset
|
730 instance.SetValue(DICOM_TAG_SOP_CLASS_UID, "1.2.840.10008.5.1.4.1.1.1", false); // CR image |
1006
649d47854314
proper handling of metadata in Store
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
831
diff
changeset
|
731 |
4505
97d103b57cd1
removed cached dicom summary from DicomInstanceToStore
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parents:
4499
diff
changeset
|
732 ParsedDicomFile dicom(instance, GetDefaultDicomEncoding(), false /* be strict */); |
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parents:
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diff
changeset
|
733 |
4508
8f9090b137f1
Optimization in C-STORE SCP by avoiding an unnecessary DICOM parsing
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parents:
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diff
changeset
|
734 std::unique_ptr<DicomInstanceToStore> toStore(DicomInstanceToStore::CreateFromParsedDicomFile(dicom)); |
4505
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parents:
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diff
changeset
|
735 |
4506
ac69c9f76c71
refactoring ServerIndex::Store()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
736 std::map<MetadataType, std::string> instanceMetadata; |
ac69c9f76c71
refactoring ServerIndex::Store()
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parents:
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diff
changeset
|
737 |
4505
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diff
changeset
|
738 { |
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diff
changeset
|
739 DicomMap summary; |
4508
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Optimization in C-STORE SCP by avoiding an unnecessary DICOM parsing
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diff
changeset
|
740 OrthancConfiguration::DefaultExtractDicomSummary(summary, toStore->GetParsedDicomFile()); |
4514
5b929e6b3c36
removal of "dicom-as-json" attachments
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parents:
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diff
changeset
|
741 toStore->SetOrigin(DicomInstanceOrigin::FromPlugins()); |
4505
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diff
changeset
|
742 |
4507
b4c58795f3a8
widening the use of DicomTransferSyntax enum
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parents:
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diff
changeset
|
743 DicomTransferSyntax transferSyntax; |
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parents:
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diff
changeset
|
744 bool hasTransferSyntax = dicom.LookupTransferSyntax(transferSyntax); |
ac69c9f76c71
refactoring ServerIndex::Store()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
745 ASSERT_EQ(StoreStatus_Success, index.Store( |
5044
6fed78e13233
Refactored DicomMap to handle sequences when needed
Alain Mazy <am@osimis.io>
parents:
5039
diff
changeset
|
746 instanceMetadata, summary, attachments, toStore->GetMetadata(), |
4508
8f9090b137f1
Optimization in C-STORE SCP by avoiding an unnecessary DICOM parsing
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4507
diff
changeset
|
747 toStore->GetOrigin(), false /* don't overwrite */, |
5316
03501a258d9e
added instance metadata "PixelDataVR"
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parents:
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diff
changeset
|
748 hasTransferSyntax, transferSyntax, true /* has pixel data */, 42 /* pixel data offset */, |
03501a258d9e
added instance metadata "PixelDataVR"
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parents:
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diff
changeset
|
749 ValueRepresentation_PersonName /* pixel data VR */, false)); |
4505
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parents:
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diff
changeset
|
750 } |
97d103b57cd1
removed cached dicom summary from DicomInstanceToStore
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parents:
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diff
changeset
|
751 |
5316
03501a258d9e
added instance metadata "PixelDataVR"
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5251
diff
changeset
|
752 ASSERT_EQ(8u, instanceMetadata.size()); |
4460
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753 ASSERT_TRUE(instanceMetadata.find(MetadataType_RemoteAet) != instanceMetadata.end()); |
1029 | 754 ASSERT_TRUE(instanceMetadata.find(MetadataType_Instance_ReceptionDate) != instanceMetadata.end()); |
2190 | 755 ASSERT_TRUE(instanceMetadata.find(MetadataType_Instance_TransferSyntax) != instanceMetadata.end()); |
2208
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diff
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|
756 ASSERT_TRUE(instanceMetadata.find(MetadataType_Instance_SopClassUid) != instanceMetadata.end()); |
4494
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757 ASSERT_TRUE(instanceMetadata.find(MetadataType_Instance_PixelDataOffset) != instanceMetadata.end()); |
4992 | 758 ASSERT_TRUE(instanceMetadata.find(MetadataType_MainDicomTagsSignature) != instanceMetadata.end()); |
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|
759 ASSERT_TRUE(instanceMetadata.find(MetadataType_Instance_PixelDataVR) != instanceMetadata.end()); |
2190 | 760 |
4499 | 761 ASSERT_EQ("42", instanceMetadata[MetadataType_Instance_PixelDataOffset]); |
5316
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diff
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|
762 ASSERT_EQ("PN", instanceMetadata[MetadataType_Instance_PixelDataVR]); |
4499 | 763 |
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764 // The default transfer syntax depends on the OS endianness |
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765 std::string s = instanceMetadata[MetadataType_Instance_TransferSyntax]; |
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766 ASSERT_TRUE(s == "1.2.840.10008.1.2.1" || |
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767 s == "1.2.840.10008.1.2.2"); |
713
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|
768 |
2208
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New metadata automatically computed at the instance level: "SopClassUid"
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diff
changeset
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769 ASSERT_EQ("1.2.840.10008.5.1.4.1.1.1", instanceMetadata[MetadataType_Instance_SopClassUid]); |
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770 |
713
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diff
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771 DicomInstanceHasher hasher(instance); |
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772 ids.push_back(hasher.HashPatient()); |
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773 ids.push_back(hasher.HashStudy()); |
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774 ids.push_back(hasher.HashSeries()); |
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test attachment recycling
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775 ids.push_back(hasher.HashInstance()); |
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|
776 } |
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777 |
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778 index.GetGlobalStatistics(diskSize, uncompressedSize, countPatients, |
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779 countStudies, countSeries, countInstances); |
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780 ASSERT_EQ(10u, countPatients); |
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781 ASSERT_EQ(0u, diskSize); |
713
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782 |
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783 for (size_t i = 0; i < ids.size(); i++) |
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784 { |
2512
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SystemToolbox::GenerateUuid moved to Toolbox::GenerateUuid
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diff
changeset
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785 FileInfo info(Toolbox::GenerateUuid(), FileContentType_Dicom, 1, "md5"); |
4627
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handling revisions of attachments
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diff
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|
786 int64_t revision = -1; |
4640
66109d24d26e
"ETag" headers for metadata and attachments now allow strong comparison (MD5 is included)
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parents:
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|
787 index.AddAttachment(revision, info, ids[i], false /* no previous revision */, -1, ""); |
4627
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|
788 ASSERT_EQ(0, revision); |
713
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diff
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|
789 |
3174
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790 index.GetGlobalStatistics(diskSize, uncompressedSize, countPatients, |
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791 countStudies, countSeries, countInstances); |
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792 ASSERT_GE(10u, diskSize); |
713
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793 } |
707
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unit tests of httpclient
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diff
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|
794 |
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parents:
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diff
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|
795 // Because the DB is in memory, the SQLite index must not have been created |
2140 | 796 ASSERT_FALSE(SystemToolbox::IsRegularFile(path + "/index")); |
1453
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|
797 |
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|
798 context.Stop(); |
1672
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sample database plugin now working
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diff
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|
799 db.Close(); |
705 | 800 } |
1764 | 801 |
802 | |
3036
8fd203510d8b
moving LookupIdentifierQuery to the graveyard
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3019
diff
changeset
|
803 TEST(ServerIndex, NormalizeIdentifier) |
1764 | 804 { |
2121 | 805 ASSERT_EQ("H^L.LO", ServerToolbox::NormalizeIdentifier(" Hé^l.LO %_ ")); |
806 ASSERT_EQ("1.2.840.113619.2.176.2025", ServerToolbox::NormalizeIdentifier(" 1.2.840.113619.2.176.2025 ")); | |
1764 | 807 } |
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|
808 |
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changeset
|
809 |
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|
810 TEST(ServerIndex, Overwrite) |
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811 { |
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812 // Create a dummy 1x1 image |
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813 Image image(PixelFormat_Grayscale8, 1, 1, false); |
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814 reinterpret_cast<uint8_t*>(image.GetBuffer()) [0] = 128; |
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changeset
|
815 |
2826
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|
816 for (unsigned int i = 0; i < 2; i++) |
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|
817 { |
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|
818 bool overwrite = (i == 0); |
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|
819 |
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changeset
|
820 MemoryStorageArea storage; |
3017
517fc4767ae0
renamed class DatabaseWrapper as SQLiteDatabaseWrapper
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3001
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changeset
|
821 SQLiteDatabaseWrapper db; // The SQLite DB is in memory |
2826
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|
822 db.Open(); |
5785 | 823 ServerContext context(db, storage, true /* running unit tests */, 10, false /* readonly */); |
2826
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|
824 context.SetupJobsEngine(true, false); |
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|
825 context.SetCompressionEnabled(true); |
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|
826 |
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827 DicomMap instance; |
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changeset
|
828 instance.SetValue(DICOM_TAG_PATIENT_ID, "patient", false); |
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|
829 instance.SetValue(DICOM_TAG_PATIENT_NAME, "name", false); |
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|
830 instance.SetValue(DICOM_TAG_STUDY_INSTANCE_UID, "study", false); |
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|
831 instance.SetValue(DICOM_TAG_SERIES_INSTANCE_UID, "series", false); |
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|
832 instance.SetValue(DICOM_TAG_SOP_INSTANCE_UID, "sop", false); |
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833 instance.SetValue(DICOM_TAG_SOP_CLASS_UID, "1.2.840.10008.5.1.4.1.1.1", false); // CR image |
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|
834 |
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835 DicomInstanceHasher hasher(instance); |
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changeset
|
836 std::string id = hasher.HashInstance(); |
3813
aaaa442bfe39
moving SetOverwriteInstances from ServerIndex to ServerContext
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changeset
|
837 context.SetOverwriteInstances(overwrite); |
2826
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838 |
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839 uint64_t diskSize, uncompressedSize, countPatients, countStudies, countSeries, countInstances; |
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840 context.GetIndex().GetGlobalStatistics(diskSize, uncompressedSize, countPatients, |
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|
841 countStudies, countSeries, countInstances); |
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changeset
|
842 |
3179
fca730c267d7
New primitives to set and refresh metrics
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diff
changeset
|
843 ASSERT_EQ(0u, countInstances); |
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changeset
|
844 ASSERT_EQ(0u, diskSize); |
2826
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845 |
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|
846 { |
4505
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removed cached dicom summary from DicomInstanceToStore
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|
847 ParsedDicomFile dicom(instance, GetDefaultDicomEncoding(), false /* be strict */); |
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848 |
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849 // Add a pixel data so as to have one "FileContentType_DicomUntilPixelData" |
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850 // (because of "context.SetCompressionEnabled(true)") |
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851 dicom.EmbedImage(image); |
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|
852 |
4505
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changeset
|
853 DicomInstanceHasher hasher(instance); |
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|
854 |
4508
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Optimization in C-STORE SCP by avoiding an unnecessary DICOM parsing
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|
855 std::unique_ptr<DicomInstanceToStore> toStore(DicomInstanceToStore::CreateFromParsedDicomFile(dicom)); |
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changeset
|
856 toStore->SetOrigin(DicomInstanceOrigin::FromPlugins()); |
4505
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|
857 ASSERT_EQ(id, hasher.HashInstance()); |
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|
858 |
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|
859 std::string id2; |
4796
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added ReceivedCStoreInstanceFilter lua callback + OrthancPluginRegisterIncomingCStoreInstanceFilter in sdk
Alain Mazy <am@osimis.io>
parents:
4640
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changeset
|
860 ServerContext::StoreResult result = context.Store(id2, *toStore, StoreInstanceMode_Default); |
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added ReceivedCStoreInstanceFilter lua callback + OrthancPluginRegisterIncomingCStoreInstanceFilter in sdk
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|
861 ASSERT_EQ(StoreStatus_Success, result.GetStatus()); |
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862 ASSERT_EQ(id, id2); |
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863 } |
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864 |
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865 { |
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|
866 FileInfo nope; |
4627
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diff
changeset
|
867 int64_t revision; |
5850
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|
868 ASSERT_FALSE(context.GetIndex().LookupAttachment(nope, revision, ResourceType_Instance, id, FileContentType_DicomAsJson)); |
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869 } |
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|
870 |
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871 FileInfo dicom1, pixelData1; |
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872 int64_t revision; |
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873 ASSERT_TRUE(context.GetIndex().LookupAttachment(dicom1, revision, ResourceType_Instance, id, FileContentType_Dicom)); |
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874 ASSERT_EQ(0, revision); |
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875 revision = -1; |
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876 ASSERT_TRUE(context.GetIndex().LookupAttachment(pixelData1, revision, ResourceType_Instance, id, FileContentType_DicomUntilPixelData)); |
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877 ASSERT_EQ(0, revision); |
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878 |
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879 context.GetIndex().GetGlobalStatistics(diskSize, uncompressedSize, countPatients, |
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880 countStudies, countSeries, countInstances); |
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881 ASSERT_EQ(1u, countInstances); |
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882 ASSERT_EQ(dicom1.GetCompressedSize() + pixelData1.GetCompressedSize(), diskSize); |
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883 ASSERT_EQ(dicom1.GetUncompressedSize() + pixelData1.GetUncompressedSize(), uncompressedSize); |
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884 |
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885 Json::Value tmp; |
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886 context.ReadDicomAsJson(tmp, id); |
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887 ASSERT_EQ("name", tmp["0010,0010"]["Value"].asString()); |
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888 |
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889 { |
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890 ServerContext::DicomCacheLocker locker(context, id); |
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891 std::string tmp; |
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892 locker.GetDicom().GetTagValue(tmp, DICOM_TAG_PATIENT_NAME); |
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893 ASSERT_EQ("name", tmp); |
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894 } |
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895 |
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896 { |
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897 DicomMap instance2; |
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898 instance2.Assign(instance); |
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899 instance2.SetValue(DICOM_TAG_PATIENT_NAME, "overwritten", false); |
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900 |
4505
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|
901 ParsedDicomFile dicom(instance2, GetDefaultDicomEncoding(), false /* be strict */); |
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|
902 |
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903 // Add a pixel data so as to have one "FileContentType_DicomUntilPixelData" |
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904 dicom.EmbedImage(image); |
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|
905 |
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|
906 std::unique_ptr<DicomInstanceToStore> toStore(DicomInstanceToStore::CreateFromParsedDicomFile(dicom)); |
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|
907 toStore->SetOrigin(DicomInstanceOrigin::FromPlugins()); |
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|
908 |
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|
909 std::string id2; |
4796
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Alain Mazy <am@osimis.io>
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|
910 ServerContext::StoreResult result = context.Store(id2, *toStore, StoreInstanceMode_Default); |
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|
911 ASSERT_EQ(overwrite ? StoreStatus_Success : StoreStatus_AlreadyStored, result.GetStatus()); |
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912 ASSERT_EQ(id, id2); |
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913 } |
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|
914 |
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915 { |
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|
916 FileInfo nope; |
4627
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|
917 int64_t revision; |
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|
918 ASSERT_FALSE(context.GetIndex().LookupAttachment(nope, revision, ResourceType_Instance, id, FileContentType_DicomAsJson)); |
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|
919 } |
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|
920 |
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|
921 FileInfo dicom2, pixelData2; |
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|
922 ASSERT_TRUE(context.GetIndex().LookupAttachment(dicom2, revision, ResourceType_Instance, id, FileContentType_Dicom)); |
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|
923 ASSERT_EQ(0, revision); |
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|
924 revision = -1; |
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|
925 ASSERT_TRUE(context.GetIndex().LookupAttachment(pixelData2, revision, ResourceType_Instance, id, FileContentType_DicomUntilPixelData)); |
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|
926 ASSERT_EQ(0, revision); |
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|
927 |
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|
928 context.GetIndex().GetGlobalStatistics(diskSize, uncompressedSize, countPatients, |
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|
929 countStudies, countSeries, countInstances); |
3179
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New primitives to set and refresh metrics
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3174
diff
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|
930 ASSERT_EQ(1u, countInstances); |
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|
931 ASSERT_EQ(dicom2.GetCompressedSize() + pixelData2.GetCompressedSize(), diskSize); |
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|
932 ASSERT_EQ(dicom2.GetUncompressedSize() + pixelData2.GetUncompressedSize(), uncompressedSize); |
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|
933 |
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|
934 if (overwrite) |
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|
935 { |
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|
936 ASSERT_NE(dicom1.GetUuid(), dicom2.GetUuid()); |
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|
937 ASSERT_NE(pixelData1.GetUuid(), pixelData2.GetUuid()); |
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|
938 ASSERT_NE(dicom1.GetUncompressedSize(), dicom2.GetUncompressedSize()); |
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|
939 ASSERT_NE(pixelData1.GetUncompressedSize(), pixelData2.GetUncompressedSize()); |
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|
940 |
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|
941 context.ReadDicomAsJson(tmp, id); |
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|
942 ASSERT_EQ("overwritten", tmp["0010,0010"]["Value"].asString()); |
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|
943 |
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|
944 { |
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945 ServerContext::DicomCacheLocker locker(context, id); |
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|
946 std::string tmp; |
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|
947 locker.GetDicom().GetTagValue(tmp, DICOM_TAG_PATIENT_NAME); |
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|
948 ASSERT_EQ("overwritten", tmp); |
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|
949 } |
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|
950 } |
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951 else |
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|
952 { |
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953 ASSERT_EQ(dicom1.GetUuid(), dicom2.GetUuid()); |
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|
954 ASSERT_EQ(pixelData1.GetUuid(), pixelData2.GetUuid()); |
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|
955 ASSERT_EQ(dicom1.GetUncompressedSize(), dicom2.GetUncompressedSize()); |
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|
956 ASSERT_EQ(pixelData1.GetUncompressedSize(), pixelData2.GetUncompressedSize()); |
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|
957 |
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958 context.ReadDicomAsJson(tmp, id); |
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959 ASSERT_EQ("name", tmp["0010,0010"]["Value"].asString()); |
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|
960 |
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|
961 { |
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|
962 ServerContext::DicomCacheLocker locker(context, id); |
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963 std::string tmp; |
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|
964 locker.GetDicom().GetTagValue(tmp, DICOM_TAG_PATIENT_NAME); |
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|
965 ASSERT_EQ("name", tmp); |
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|
966 } |
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|
967 } |
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|
968 |
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|
969 context.Stop(); |
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|
970 db.Close(); |
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|
971 } |
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972 } |
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|
973 |
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|
974 |
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|
975 TEST(ServerIndex, DicomUntilPixelData) |
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|
976 { |
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|
977 // Create a dummy 1x1 image |
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|
978 Image image(PixelFormat_Grayscale8, 1, 1, false); |
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979 reinterpret_cast<uint8_t*>(image.GetBuffer()) [0] = 128; |
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980 |
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981 for (unsigned int i = 0; i < 2; i++) |
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982 { |
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983 const bool compression = (i == 0); |
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984 |
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985 MemoryStorageArea storage; |
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986 SQLiteDatabaseWrapper db; // The SQLite DB is in memory |
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987 db.Open(); |
5785 | 988 ServerContext context(db, storage, true /* running unit tests */, 10, false /* readonly */); |
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989 context.SetupJobsEngine(true, false); |
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990 context.SetCompressionEnabled(compression); |
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991 |
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992 for (unsigned int j = 0; j < 2; j++) |
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993 { |
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994 const bool withPixelData = (j == 0); |
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995 |
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996 ParsedDicomFile dicom(true); |
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997 |
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998 if (withPixelData) |
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999 { |
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1000 dicom.EmbedImage(image); |
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1001 } |
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1002 |
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1003 std::string id; |
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1004 size_t dicomSize; |
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1005 |
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1006 { |
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1007 std::unique_ptr<DicomInstanceToStore> toStore(DicomInstanceToStore::CreateFromParsedDicomFile(dicom)); |
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1008 dicomSize = toStore->GetBufferSize(); |
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1009 toStore->SetOrigin(DicomInstanceOrigin::FromPlugins()); |
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1010 ServerContext::StoreResult result = context.Store(id, *toStore, StoreInstanceMode_Default); |
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1011 ASSERT_EQ(StoreStatus_Success, result.GetStatus()); |
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1012 } |
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1013 |
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1014 std::set<FileContentType> attachments; |
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1015 context.GetIndex().ListAvailableAttachments(attachments, id, ResourceType_Instance); |
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1016 |
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1017 ASSERT_TRUE(attachments.find(FileContentType_Dicom) != attachments.end()); |
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1018 |
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1019 if (compression && |
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1020 withPixelData) |
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1021 { |
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1022 ASSERT_EQ(2u, attachments.size()); |
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1023 ASSERT_TRUE(attachments.find(FileContentType_DicomUntilPixelData) != attachments.end()); |
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1024 } |
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1025 else |
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1026 { |
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1027 ASSERT_EQ(1u, attachments.size()); |
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1028 } |
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1029 |
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1030 std::string s; |
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1031 int64_t revision; |
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1032 bool found = context.GetIndex().LookupMetadata(s, revision, id, ResourceType_Instance, |
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1033 MetadataType_Instance_PixelDataOffset); |
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1034 |
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1035 if (withPixelData) |
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1036 { |
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1037 ASSERT_TRUE(found); |
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1038 ASSERT_EQ(0, revision); |
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1039 ASSERT_GT(boost::lexical_cast<int>(s), 128 /* length of the DICOM preamble */); |
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1040 ASSERT_LT(boost::lexical_cast<size_t>(s), dicomSize); |
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1041 } |
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1042 else |
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1043 { |
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1044 ASSERT_FALSE(found); |
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1045 } |
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1046 } |
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1047 } |
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1048 } |
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1049 |
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1050 |
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1051 TEST(ServerToolbox, ValidLabels) |
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1052 { |
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1053 ASSERT_TRUE(ServerToolbox::IsValidLabel("abcdefghijklmnopqrstuvwxyz" |
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1054 "ABCDEFGHIJKLMNOPQRSTUVWXYZ")); |
5251 | 1055 ASSERT_TRUE(ServerToolbox::IsValidLabel("0123456789-_")); |
5244
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1056 ASSERT_FALSE(ServerToolbox::IsValidLabel("")); |
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1057 ASSERT_FALSE(ServerToolbox::IsValidLabel(" ")); |
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1058 ASSERT_FALSE(ServerToolbox::IsValidLabel("&")); |
5251 | 1059 ASSERT_FALSE(ServerToolbox::IsValidLabel(".")); |
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1060 } |