Mercurial > hg > orthanc
annotate OrthancServer/Sources/OrthancWebDav.cpp @ 5850:1980354c8113 find-refactoring
add level of interest to StatelessDatabaseOperations::LookupAttachment()
| author | Sebastien Jodogne <s.jodogne@gmail.com> |
|---|---|
| date | Tue, 29 Oct 2024 15:03:32 +0000 |
| parents | 58c549b881ae |
| children | ea547160f27e |
| rev | line source |
|---|---|
| 4240 | 1 /** |
| 2 * Orthanc - A Lightweight, RESTful DICOM Store | |
| 3 * Copyright (C) 2012-2016 Sebastien Jodogne, Medical Physics | |
| 4 * Department, University Hospital of Liege, Belgium | |
|
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5 * Copyright (C) 2017-2023 Osimis S.A., Belgium |
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6 * Copyright (C) 2024-2024 Orthanc Team SRL, Belgium |
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7 * Copyright (C) 2021-2024 Sebastien Jodogne, ICTEAM UCLouvain, Belgium |
| 4240 | 8 * |
| 9 * This program is free software: you can redistribute it and/or | |
| 10 * modify it under the terms of the GNU General Public License as | |
| 11 * published by the Free Software Foundation, either version 3 of the | |
| 12 * License, or (at your option) any later version. | |
| 13 * | |
| 14 * This program is distributed in the hope that it will be useful, but | |
| 15 * WITHOUT ANY WARRANTY; without even the implied warranty of | |
| 16 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU | |
| 17 * General Public License for more details. | |
| 18 * | |
| 19 * You should have received a copy of the GNU General Public License | |
| 20 * along with this program. If not, see <http://www.gnu.org/licenses/>. | |
| 21 **/ | |
| 22 | |
| 23 | |
| 24 #include "OrthancWebDav.h" | |
| 25 | |
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26 #include "../../OrthancFramework/Sources/Compression/ZipReader.h" |
| 4240 | 27 #include "../../OrthancFramework/Sources/DicomFormat/DicomArray.h" |
| 28 #include "../../OrthancFramework/Sources/DicomParsing/FromDcmtkBridge.h" | |
| 29 #include "../../OrthancFramework/Sources/HttpServer/WebDavStorage.h" | |
| 4304 | 30 #include "../../OrthancFramework/Sources/Logging.h" |
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31 #include "ResourceFinder.h" |
| 4240 | 32 #include "Search/DatabaseLookup.h" |
| 33 #include "ServerContext.h" | |
| 34 | |
| 35 #include <boost/regex.hpp> | |
| 36 #include <boost/algorithm/string/predicate.hpp> | |
| 37 | |
| 38 | |
| 39 static const char* const BY_PATIENTS = "by-patients"; | |
| 40 static const char* const BY_STUDIES = "by-studies"; | |
| 4241 | 41 static const char* const BY_DATES = "by-dates"; |
| 4240 | 42 static const char* const BY_UIDS = "by-uids"; |
| 43 static const char* const UPLOADS = "uploads"; | |
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44 static const char* const STUDY_INFO = "study.json"; |
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45 static const char* const SERIES_INFO = "series.json"; |
| 4240 | 46 |
| 47 | |
| 48 namespace Orthanc | |
| 49 { | |
| 50 static boost::posix_time::ptime GetNow() | |
| 51 { | |
| 52 return boost::posix_time::second_clock::universal_time(); | |
| 53 } | |
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54 |
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55 |
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56 static void ParseTime(boost::posix_time::ptime& target, |
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57 const std::string& value) |
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58 { |
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59 try |
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60 { |
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61 target = boost::posix_time::from_iso_string(value); |
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62 } |
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63 catch (std::exception& e) |
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64 { |
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65 target = GetNow(); |
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66 } |
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67 } |
| 4240 | 68 |
| 69 | |
| 70 static void LookupTime(boost::posix_time::ptime& target, | |
| 71 ServerContext& context, | |
| 72 const std::string& publicId, | |
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73 ResourceType level, |
| 4240 | 74 MetadataType metadata) |
| 75 { | |
| 76 std::string value; | |
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77 int64_t revision; // Ignored |
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78 if (context.GetIndex().LookupMetadata(value, revision, publicId, level, metadata)) |
| 4240 | 79 { |
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80 ParseTime(target, value); |
| 4240 | 81 } |
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82 else |
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83 { |
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84 target = GetNow(); |
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85 } |
| 4240 | 86 } |
| 87 | |
| 88 | |
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89 class OrthancWebDav::DicomIdentifiersVisitorV2 : public ResourceFinder::IVisitor |
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90 { |
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91 private: |
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92 bool isComplete_; |
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93 Collection& target_; |
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94 |
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95 public: |
| 5702 | 96 explicit DicomIdentifiersVisitorV2(Collection& target) : |
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97 isComplete_(false), |
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98 target_(target) |
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99 { |
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100 } |
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101 |
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102 virtual void MarkAsComplete() ORTHANC_OVERRIDE |
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103 { |
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104 isComplete_ = true; // TODO |
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105 } |
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106 |
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107 virtual void Apply(const FindResponse::Resource& resource, |
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108 const DicomMap& requestedTags) ORTHANC_OVERRIDE |
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109 { |
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110 DicomMap resourceTags; |
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111 resource.GetMainDicomTags(resourceTags, resource.GetLevel()); |
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112 |
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113 std::string uid; |
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114 bool hasUid; |
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115 |
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116 std::string time; |
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117 bool hasTime; |
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118 |
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119 switch (resource.GetLevel()) |
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120 { |
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121 case ResourceType_Study: |
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122 hasUid = resourceTags.LookupStringValue(uid, DICOM_TAG_STUDY_INSTANCE_UID, false); |
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123 hasTime = resource.LookupMetadata(time, resource.GetLevel(), MetadataType_LastUpdate); |
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124 break; |
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125 |
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126 case ResourceType_Series: |
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127 hasUid = resourceTags.LookupStringValue(uid, DICOM_TAG_SERIES_INSTANCE_UID, false); |
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128 hasTime = resource.LookupMetadata(time, resource.GetLevel(), MetadataType_LastUpdate); |
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129 break; |
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130 |
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131 case ResourceType_Instance: |
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132 hasUid = resourceTags.LookupStringValue(uid, DICOM_TAG_SOP_INSTANCE_UID, false); |
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133 hasTime = resource.LookupMetadata(time, resource.GetLevel(), MetadataType_Instance_ReceptionDate); |
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134 break; |
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135 |
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136 default: |
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137 throw OrthancException(ErrorCode_InternalError); |
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138 } |
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139 |
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140 if (hasUid && |
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141 !uid.empty()) |
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142 { |
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143 std::unique_ptr<Resource> item; |
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144 |
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145 if (resource.GetLevel() == ResourceType_Instance) |
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146 { |
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147 FileInfo info; |
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148 if (resource.LookupAttachment(info, FileContentType_Dicom)) |
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149 { |
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150 std::unique_ptr<File> f(new File(uid + ".dcm")); |
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151 f->SetMimeType(MimeType_Dicom); |
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152 f->SetContentLength(info.GetUncompressedSize()); |
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153 item.reset(f.release()); |
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154 } |
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155 } |
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156 else |
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157 { |
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158 item.reset(new Folder(uid)); |
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159 } |
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160 |
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161 if (item.get() != NULL) |
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162 { |
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163 if (hasTime) |
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164 { |
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165 boost::posix_time::ptime t; |
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166 ParseTime(t, time); |
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167 item->SetCreationTime(t); |
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168 } |
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169 else |
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170 { |
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171 item->SetCreationTime(GetNow()); |
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172 } |
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173 |
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174 target_.AddResource(item.release()); |
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175 } |
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176 } |
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177 } |
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178 }; |
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179 |
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180 |
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181 class OrthancWebDav::DicomFileVisitorV2 : public ResourceFinder::IVisitor |
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182 { |
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183 private: |
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184 ServerContext& context_; |
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185 bool success_; |
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186 std::string& target_; |
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187 boost::posix_time::ptime& time_; |
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188 |
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189 public: |
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190 DicomFileVisitorV2(ServerContext& context, |
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191 std::string& target, |
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192 boost::posix_time::ptime& time) : |
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193 context_(context), |
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194 success_(false), |
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195 target_(target), |
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196 time_(time) |
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197 { |
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198 } |
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199 |
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200 bool IsSuccess() const |
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201 { |
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202 return success_; |
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203 } |
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204 |
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205 virtual void MarkAsComplete() ORTHANC_OVERRIDE |
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206 { |
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207 } |
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208 |
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209 virtual void Apply(const FindResponse::Resource& resource, |
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210 const DicomMap& requestedTags) ORTHANC_OVERRIDE |
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211 { |
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212 if (success_) |
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213 { |
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214 success_ = false; // Two matches => Error |
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215 } |
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216 else |
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217 { |
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218 std::string s; |
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219 if (resource.LookupMetadata(s, ResourceType_Instance, MetadataType_Instance_ReceptionDate)) |
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220 { |
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221 ParseTime(time_, s); |
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222 } |
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223 else |
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224 { |
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225 time_ = GetNow(); |
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226 } |
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227 |
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228 context_.ReadDicom(target_, resource.GetIdentifier()); |
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229 success_ = true; |
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230 } |
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231 } |
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232 }; |
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233 |
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234 |
| 4240 | 235 class OrthancWebDav::ResourcesIndex : public boost::noncopyable |
| 236 { | |
| 237 public: | |
| 238 typedef std::map<std::string, std::string> Map; | |
| 239 | |
| 240 private: | |
| 241 ServerContext& context_; | |
| 242 ResourceType level_; | |
| 243 std::string template_; | |
| 244 Map pathToResource_; | |
| 245 Map resourceToPath_; | |
| 246 | |
| 247 void CheckInvariants() | |
| 248 { | |
| 249 #ifndef NDEBUG | |
| 250 assert(pathToResource_.size() == resourceToPath_.size()); | |
| 251 | |
| 252 for (Map::const_iterator it = pathToResource_.begin(); it != pathToResource_.end(); ++it) | |
| 253 { | |
| 254 assert(resourceToPath_[it->second] == it->first); | |
| 255 } | |
| 256 | |
| 257 for (Map::const_iterator it = resourceToPath_.begin(); it != resourceToPath_.end(); ++it) | |
| 258 { | |
| 259 assert(pathToResource_[it->second] == it->first); | |
| 260 } | |
| 261 #endif | |
| 262 } | |
| 263 | |
| 264 void AddTags(DicomMap& target, | |
| 265 const std::string& resourceId, | |
| 266 ResourceType tagsFromLevel) | |
| 267 { | |
| 268 DicomMap tags; | |
| 269 if (context_.GetIndex().GetMainDicomTags(tags, resourceId, level_, tagsFromLevel)) | |
| 270 { | |
| 271 target.Merge(tags); | |
| 272 } | |
| 273 } | |
| 274 | |
| 275 void Register(const std::string& resourceId) | |
| 276 { | |
| 277 // Don't register twice the same resource | |
| 278 if (resourceToPath_.find(resourceId) == resourceToPath_.end()) | |
| 279 { | |
| 280 std::string name = template_; | |
| 281 | |
| 282 DicomMap tags; | |
| 283 | |
| 284 AddTags(tags, resourceId, level_); | |
| 285 | |
| 286 if (level_ == ResourceType_Study) | |
| 287 { | |
| 288 AddTags(tags, resourceId, ResourceType_Patient); | |
| 289 } | |
| 290 | |
| 291 DicomArray arr(tags); | |
| 292 for (size_t i = 0; i < arr.GetSize(); i++) | |
| 293 { | |
| 294 const DicomElement& element = arr.GetElement(i); | |
| 295 if (!element.GetValue().IsNull() && | |
| 296 !element.GetValue().IsBinary()) | |
| 297 { | |
| 298 const std::string tag = FromDcmtkBridge::GetTagName(element.GetTag(), ""); | |
| 299 boost::replace_all(name, "{{" + tag + "}}", element.GetValue().GetContent()); | |
| 300 } | |
| 301 } | |
| 302 | |
| 303 // Blank the tags that were not matched | |
| 304 static const boost::regex REGEX_BLANK_TAGS("{{.*?}}"); // non-greedy match | |
| 305 name = boost::regex_replace(name, REGEX_BLANK_TAGS, ""); | |
| 306 | |
| 307 // UTF-8 characters cannot be used on Windows XP | |
| 308 name = Toolbox::ConvertToAscii(name); | |
| 309 boost::replace_all(name, "/", ""); | |
| 310 boost::replace_all(name, "\\", ""); | |
| 311 | |
| 312 // Trim sequences of spaces as one single space | |
| 313 static const boost::regex REGEX_TRIM_SPACES("{{.*?}}"); | |
| 314 name = boost::regex_replace(name, REGEX_TRIM_SPACES, " "); | |
| 315 name = Toolbox::StripSpaces(name); | |
| 316 | |
| 317 size_t count = 0; | |
| 318 for (;;) | |
| 319 { | |
| 320 std::string path = name; | |
| 321 if (count > 0) | |
| 322 { | |
| 323 path += " (" + boost::lexical_cast<std::string>(count) + ")"; | |
| 324 } | |
| 325 | |
| 326 if (pathToResource_.find(path) == pathToResource_.end()) | |
| 327 { | |
| 328 pathToResource_[path] = resourceId; | |
| 329 resourceToPath_[resourceId] = path; | |
| 330 return; | |
| 331 } | |
| 332 | |
| 333 count++; | |
| 334 } | |
| 335 | |
| 336 throw OrthancException(ErrorCode_InternalError); | |
| 337 } | |
| 338 } | |
| 339 | |
| 340 public: | |
| 341 ResourcesIndex(ServerContext& context, | |
| 342 ResourceType level, | |
| 343 const std::string& templateString) : | |
| 344 context_(context), | |
| 345 level_(level), | |
| 346 template_(templateString) | |
| 347 { | |
| 348 } | |
| 349 | |
| 350 ResourceType GetLevel() const | |
| 351 { | |
| 352 return level_; | |
| 353 } | |
| 354 | |
| 355 void Refresh(std::set<std::string>& removedPaths /* out */, | |
| 356 const std::set<std::string>& resources) | |
| 357 { | |
| 358 CheckInvariants(); | |
| 359 | |
| 360 // Detect the resources that have been removed since last refresh | |
| 361 removedPaths.clear(); | |
| 362 std::set<std::string> removedResources; | |
| 363 | |
| 364 for (Map::iterator it = resourceToPath_.begin(); it != resourceToPath_.end(); ++it) | |
| 365 { | |
| 366 if (resources.find(it->first) == resources.end()) | |
| 367 { | |
| 368 const std::string& path = it->second; | |
| 369 | |
| 370 assert(pathToResource_.find(path) != pathToResource_.end()); | |
| 371 pathToResource_.erase(path); | |
| 372 removedPaths.insert(path); | |
| 373 | |
| 374 removedResources.insert(it->first); // Delay the removal to avoid disturbing the iterator | |
| 375 } | |
| 376 } | |
| 377 | |
| 378 // Remove the missing resources | |
| 379 for (std::set<std::string>::const_iterator it = removedResources.begin(); it != removedResources.end(); ++it) | |
| 380 { | |
| 381 assert(resourceToPath_.find(*it) != resourceToPath_.end()); | |
| 382 resourceToPath_.erase(*it); | |
| 383 } | |
| 384 | |
| 385 CheckInvariants(); | |
| 386 | |
| 387 for (std::set<std::string>::const_iterator it = resources.begin(); it != resources.end(); ++it) | |
| 388 { | |
| 389 Register(*it); | |
| 390 } | |
| 391 | |
| 392 CheckInvariants(); | |
| 393 } | |
| 394 | |
| 395 const Map& GetPathToResource() const | |
| 396 { | |
| 397 return pathToResource_; | |
| 398 } | |
| 399 }; | |
| 400 | |
| 401 | |
| 402 class OrthancWebDav::InstancesOfSeries : public INode | |
| 403 { | |
| 404 private: | |
| 405 ServerContext& context_; | |
| 406 std::string parentSeries_; | |
| 407 | |
|
4242
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408 static bool LookupInstanceId(std::string& instanceId, |
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409 const UriComponents& path) |
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410 { |
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411 if (path.size() == 1 && |
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412 boost::ends_with(path[0], ".dcm")) |
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413 { |
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414 instanceId = path[0].substr(0, path[0].size() - 4); |
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415 return true; |
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416 } |
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417 else |
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418 { |
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419 return false; |
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420 } |
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421 } |
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422 |
| 4240 | 423 public: |
| 424 InstancesOfSeries(ServerContext& context, | |
| 425 const std::string& parentSeries) : | |
| 426 context_(context), | |
| 427 parentSeries_(parentSeries) | |
| 428 { | |
| 429 } | |
| 430 | |
| 431 virtual bool ListCollection(IWebDavBucket::Collection& target, | |
| 432 const UriComponents& path) ORTHANC_OVERRIDE | |
| 433 { | |
| 434 if (path.empty()) | |
| 435 { | |
| 436 std::list<std::string> resources; | |
| 437 try | |
| 438 { | |
| 439 context_.GetIndex().GetChildren(resources, parentSeries_); | |
| 440 } | |
| 441 catch (OrthancException&) | |
| 442 { | |
| 443 // Unknown (or deleted) parent series | |
| 444 return false; | |
| 445 } | |
| 446 | |
| 447 for (std::list<std::string>::const_iterator | |
| 448 it = resources.begin(); it != resources.end(); ++it) | |
| 449 { | |
| 450 boost::posix_time::ptime time; | |
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451 LookupTime(time, context_, *it, ResourceType_Instance, MetadataType_Instance_ReceptionDate); |
| 4240 | 452 |
| 453 FileInfo info; | |
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454 int64_t revision; // Ignored |
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455 if (context_.GetIndex().LookupAttachment(info, revision, ResourceType_Instance, *it, FileContentType_Dicom)) |
| 4240 | 456 { |
| 457 std::unique_ptr<File> resource(new File(*it + ".dcm")); | |
| 458 resource->SetMimeType(MimeType_Dicom); | |
| 459 resource->SetContentLength(info.GetUncompressedSize()); | |
| 460 resource->SetCreationTime(time); | |
| 461 target.AddResource(resource.release()); | |
| 462 } | |
| 463 } | |
| 464 | |
| 465 return true; | |
| 466 } | |
| 467 else | |
| 468 { | |
| 469 return false; | |
| 470 } | |
| 471 } | |
| 472 | |
| 473 virtual bool GetFileContent(MimeType& mime, | |
| 474 std::string& content, | |
| 475 boost::posix_time::ptime& time, | |
| 476 const UriComponents& path) ORTHANC_OVERRIDE | |
| 477 { | |
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478 std::string instanceId; |
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479 if (LookupInstanceId(instanceId, path)) |
| 4240 | 480 { |
| 481 try | |
| 482 { | |
| 483 mime = MimeType_Dicom; | |
| 484 context_.ReadDicom(content, instanceId); | |
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485 LookupTime(time, context_, instanceId, ResourceType_Instance, MetadataType_Instance_ReceptionDate); |
| 4240 | 486 return true; |
| 487 } | |
| 488 catch (OrthancException&) | |
| 489 { | |
| 490 // File was removed | |
| 491 return false; | |
| 492 } | |
| 493 } | |
| 494 else | |
| 495 { | |
| 496 return false; | |
| 497 } | |
| 498 } | |
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499 |
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500 virtual bool DeleteItem(const UriComponents& path) ORTHANC_OVERRIDE |
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501 { |
| 4252 | 502 if (path.empty()) |
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503 { |
| 4252 | 504 // Delete all |
| 505 std::list<std::string> resources; | |
| 506 try | |
| 507 { | |
| 508 context_.GetIndex().GetChildren(resources, parentSeries_); | |
| 509 } | |
| 510 catch (OrthancException&) | |
| 511 { | |
| 512 // Unknown (or deleted) parent series | |
| 513 return true; | |
| 514 } | |
| 515 | |
| 516 for (std::list<std::string>::const_iterator it = resources.begin(); | |
| 517 it != resources.end(); ++it) | |
| 518 { | |
| 519 Json::Value info; | |
| 520 context_.DeleteResource(info, *it, ResourceType_Instance); | |
| 521 } | |
| 522 | |
| 523 return true; | |
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524 } |
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525 else |
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526 { |
| 4252 | 527 std::string instanceId; |
| 528 if (LookupInstanceId(instanceId, path)) | |
| 529 { | |
| 530 Json::Value info; | |
| 531 return context_.DeleteResource(info, instanceId, ResourceType_Instance); | |
| 532 } | |
| 533 else | |
| 534 { | |
| 535 return false; | |
| 536 } | |
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537 } |
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538 } |
| 4240 | 539 }; |
| 540 | |
| 541 | |
| 542 | |
| 543 /** | |
| 544 * The "InternalNode" class corresponds to a non-leaf node in the | |
| 545 * WebDAV tree, that only contains subfolders (no file). | |
| 546 * | |
| 547 * TODO: Implement a LRU index to dynamically remove the oldest | |
| 548 * children on high RAM usage. | |
| 549 **/ | |
| 550 class OrthancWebDav::InternalNode : public INode | |
| 551 { | |
| 552 private: | |
| 553 typedef std::map<std::string, INode*> Children; | |
| 554 | |
| 555 Children children_; | |
| 556 | |
| 557 INode* GetChild(const std::string& path) // Don't delete the result pointer! | |
| 558 { | |
| 559 Children::const_iterator child = children_.find(path); | |
| 560 if (child == children_.end()) | |
| 561 { | |
| 4253 | 562 INode* node = CreateSubfolder(path); |
| 4240 | 563 |
| 4253 | 564 if (node == NULL) |
| 4240 | 565 { |
| 566 return NULL; | |
| 567 } | |
| 568 else | |
| 569 { | |
| 4253 | 570 children_[path] = node; |
| 571 return node; | |
| 4240 | 572 } |
| 573 } | |
| 574 else | |
| 575 { | |
| 576 assert(child->second != NULL); | |
| 577 return child->second; | |
| 578 } | |
| 579 } | |
| 580 | |
| 581 protected: | |
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582 void InvalidateSubfolder(const std::string& path) |
| 4240 | 583 { |
| 584 Children::iterator child = children_.find(path); | |
| 585 if (child != children_.end()) | |
| 586 { | |
| 587 assert(child->second != NULL); | |
| 588 delete child->second; | |
| 589 children_.erase(child); | |
| 590 } | |
| 591 } | |
| 592 | |
| 593 virtual void Refresh() = 0; | |
| 594 | |
| 595 virtual bool ListSubfolders(IWebDavBucket::Collection& target) = 0; | |
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596 |
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597 virtual INode* CreateSubfolder(const std::string& path) = 0; |
| 4240 | 598 |
| 599 public: | |
| 600 virtual ~InternalNode() | |
| 601 { | |
| 602 for (Children::iterator it = children_.begin(); it != children_.end(); ++it) | |
| 603 { | |
| 604 assert(it->second != NULL); | |
| 605 delete it->second; | |
| 606 } | |
| 607 } | |
| 608 | |
| 609 virtual bool ListCollection(IWebDavBucket::Collection& target, | |
| 610 const UriComponents& path) | |
| 611 ORTHANC_OVERRIDE ORTHANC_FINAL | |
| 612 { | |
| 613 Refresh(); | |
| 614 | |
| 615 if (path.empty()) | |
| 616 { | |
| 617 return ListSubfolders(target); | |
| 618 } | |
| 619 else | |
| 620 { | |
| 621 // Recursivity | |
| 622 INode* child = GetChild(path[0]); | |
| 623 if (child == NULL) | |
| 624 { | |
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625 // Must be "true" to allow DELETE on folders that are |
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626 // automatically removed through recursive deletion |
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627 return true; |
| 4240 | 628 } |
| 629 else | |
| 630 { | |
| 631 UriComponents subpath(path.begin() + 1, path.end()); | |
| 632 return child->ListCollection(target, subpath); | |
| 633 } | |
| 634 } | |
| 635 } | |
| 636 | |
| 637 virtual bool GetFileContent(MimeType& mime, | |
| 638 std::string& content, | |
| 639 boost::posix_time::ptime& time, | |
| 640 const UriComponents& path) | |
| 641 ORTHANC_OVERRIDE ORTHANC_FINAL | |
| 642 { | |
| 643 if (path.empty()) | |
| 644 { | |
| 645 return false; // An internal node doesn't correspond to a file | |
| 646 } | |
| 647 else | |
| 648 { | |
| 649 // Recursivity | |
| 650 Refresh(); | |
| 651 | |
| 652 INode* child = GetChild(path[0]); | |
| 653 if (child == NULL) | |
| 654 { | |
| 655 return false; | |
| 656 } | |
| 657 else | |
| 658 { | |
| 659 UriComponents subpath(path.begin() + 1, path.end()); | |
| 660 return child->GetFileContent(mime, content, time, subpath); | |
| 661 } | |
| 662 } | |
| 663 } | |
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664 |
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665 |
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666 virtual bool DeleteItem(const UriComponents& path) ORTHANC_OVERRIDE ORTHANC_FINAL |
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667 { |
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668 Refresh(); |
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669 |
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670 if (path.empty()) |
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671 { |
| 4252 | 672 IWebDavBucket::Collection collection; |
| 673 if (ListSubfolders(collection)) | |
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674 { |
| 4252 | 675 std::set<std::string> content; |
| 676 collection.ListDisplayNames(content); | |
| 677 | |
| 678 for (std::set<std::string>::const_iterator | |
| 679 it = content.begin(); it != content.end(); ++it) | |
| 680 { | |
| 681 INode* node = GetChild(*it); | |
| 682 if (node) | |
| 683 { | |
| 684 node->DeleteItem(path); | |
| 685 } | |
| 686 } | |
| 687 | |
| 688 return true; | |
|
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689 } |
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690 else |
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691 { |
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692 return false; |
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693 } |
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694 } |
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695 else |
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696 { |
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697 INode* child = GetChild(path[0]); |
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698 if (child == NULL) |
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699 { |
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700 return true; |
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701 } |
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702 else |
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703 { |
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704 // Recursivity |
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705 UriComponents subpath(path.begin() + 1, path.end()); |
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706 return child->DeleteItem(subpath); |
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707 } |
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708 } |
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709 } |
| 4240 | 710 }; |
| 711 | |
| 712 | |
| 713 class OrthancWebDav::ListOfResources : public InternalNode | |
| 714 { | |
| 715 private: | |
| 716 ServerContext& context_; | |
| 717 const Templates& templates_; | |
| 718 std::unique_ptr<ResourcesIndex> index_; | |
| 719 MetadataType timeMetadata_; | |
| 720 | |
| 721 protected: | |
| 722 virtual void Refresh() ORTHANC_OVERRIDE ORTHANC_FINAL | |
| 723 { | |
| 724 std::list<std::string> resources; | |
| 725 GetCurrentResources(resources); | |
| 726 | |
| 727 std::set<std::string> removedPaths; | |
| 728 index_->Refresh(removedPaths, std::set<std::string>(resources.begin(), resources.end())); | |
| 729 | |
| 730 // Remove the children whose associated resource doesn't exist anymore | |
| 731 for (std::set<std::string>::const_iterator | |
| 732 it = removedPaths.begin(); it != removedPaths.end(); ++it) | |
| 733 { | |
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734 InvalidateSubfolder(*it); |
| 4240 | 735 } |
| 736 } | |
| 737 | |
| 738 virtual bool ListSubfolders(IWebDavBucket::Collection& target) ORTHANC_OVERRIDE ORTHANC_FINAL | |
| 739 { | |
| 740 if (index_->GetLevel() == ResourceType_Instance) | |
| 741 { | |
| 742 // Not a collection, no subfolders | |
| 743 return false; | |
| 744 } | |
| 745 else | |
| 746 { | |
| 747 const ResourcesIndex::Map& paths = index_->GetPathToResource(); | |
| 748 | |
| 749 for (ResourcesIndex::Map::const_iterator it = paths.begin(); it != paths.end(); ++it) | |
| 750 { | |
| 751 boost::posix_time::ptime time; | |
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752 LookupTime(time, context_, it->second, index_->GetLevel(), timeMetadata_); |
| 4240 | 753 |
| 754 std::unique_ptr<IWebDavBucket::Resource> resource(new IWebDavBucket::Folder(it->first)); | |
| 755 resource->SetCreationTime(time); | |
| 756 target.AddResource(resource.release()); | |
| 757 } | |
| 758 | |
| 759 return true; | |
| 760 } | |
| 761 } | |
| 762 | |
|
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763 virtual INode* CreateSubfolder(const std::string& path) ORTHANC_OVERRIDE ORTHANC_FINAL |
| 4240 | 764 { |
| 765 ResourcesIndex::Map::const_iterator resource = index_->GetPathToResource().find(path); | |
| 766 if (resource == index_->GetPathToResource().end()) | |
| 767 { | |
| 768 return NULL; | |
| 769 } | |
| 770 else | |
| 771 { | |
| 772 return CreateResourceNode(resource->second); | |
| 773 } | |
| 774 } | |
| 775 | |
| 776 ServerContext& GetContext() const | |
| 777 { | |
| 778 return context_; | |
| 779 } | |
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780 |
| 4240 | 781 virtual void GetCurrentResources(std::list<std::string>& resources) = 0; |
| 782 | |
| 783 virtual INode* CreateResourceNode(const std::string& resource) = 0; | |
| 784 | |
| 785 public: | |
| 786 ListOfResources(ServerContext& context, | |
| 787 ResourceType level, | |
| 788 const Templates& templates) : | |
| 789 context_(context), | |
| 790 templates_(templates) | |
| 791 { | |
| 792 Templates::const_iterator t = templates.find(level); | |
| 793 if (t == templates.end()) | |
| 794 { | |
| 795 throw OrthancException(ErrorCode_ParameterOutOfRange); | |
| 796 } | |
| 797 | |
| 798 index_.reset(new ResourcesIndex(context, level, t->second)); | |
| 799 | |
| 800 if (level == ResourceType_Instance) | |
| 801 { | |
| 802 timeMetadata_ = MetadataType_Instance_ReceptionDate; | |
| 803 } | |
| 804 else | |
| 805 { | |
| 806 timeMetadata_ = MetadataType_LastUpdate; | |
| 807 } | |
| 808 } | |
| 809 | |
| 810 ResourceType GetLevel() const | |
| 811 { | |
| 812 return index_->GetLevel(); | |
| 813 } | |
| 814 | |
| 815 const Templates& GetTemplates() const | |
| 816 { | |
| 817 return templates_; | |
| 818 } | |
| 819 }; | |
| 820 | |
| 821 | |
| 822 | |
| 823 class OrthancWebDav::SingleDicomResource : public ListOfResources | |
| 824 { | |
| 825 private: | |
| 826 std::string parentId_; | |
| 827 | |
| 828 protected: | |
| 829 virtual void GetCurrentResources(std::list<std::string>& resources) ORTHANC_OVERRIDE | |
| 830 { | |
| 831 try | |
| 832 { | |
| 833 GetContext().GetIndex().GetChildren(resources, parentId_); | |
| 834 } | |
| 835 catch (OrthancException&) | |
| 836 { | |
| 837 // Unknown parent resource | |
| 838 resources.clear(); | |
| 839 } | |
| 840 } | |
| 841 | |
| 842 virtual INode* CreateResourceNode(const std::string& resource) ORTHANC_OVERRIDE | |
| 843 { | |
| 844 if (GetLevel() == ResourceType_Instance) | |
| 845 { | |
| 846 return NULL; | |
| 847 } | |
| 848 else if (GetLevel() == ResourceType_Series) | |
| 849 { | |
| 850 return new InstancesOfSeries(GetContext(), resource); | |
| 851 } | |
| 852 else | |
| 853 { | |
| 854 ResourceType l = GetChildResourceType(GetLevel()); | |
| 855 return new SingleDicomResource(GetContext(), l, resource, GetTemplates()); | |
| 856 } | |
| 857 } | |
| 858 | |
| 859 public: | |
| 860 SingleDicomResource(ServerContext& context, | |
| 861 ResourceType level, | |
| 862 const std::string& parentId, | |
| 863 const Templates& templates) : | |
| 864 ListOfResources(context, level, templates), | |
| 865 parentId_(parentId) | |
| 866 { | |
| 867 } | |
| 868 }; | |
| 869 | |
| 870 | |
| 871 class OrthancWebDav::RootNode : public ListOfResources | |
| 872 { | |
| 873 protected: | |
| 874 virtual void GetCurrentResources(std::list<std::string>& resources) ORTHANC_OVERRIDE | |
| 875 { | |
| 876 GetContext().GetIndex().GetAllUuids(resources, GetLevel()); | |
| 877 } | |
| 878 | |
| 879 virtual INode* CreateResourceNode(const std::string& resource) ORTHANC_OVERRIDE | |
| 880 { | |
| 881 if (GetLevel() == ResourceType_Series) | |
| 882 { | |
| 883 return new InstancesOfSeries(GetContext(), resource); | |
| 884 } | |
| 885 else | |
| 886 { | |
| 887 ResourceType l = GetChildResourceType(GetLevel()); | |
| 888 return new SingleDicomResource(GetContext(), l, resource, GetTemplates()); | |
| 889 } | |
| 890 } | |
| 891 | |
| 892 public: | |
| 893 RootNode(ServerContext& context, | |
| 894 ResourceType level, | |
| 895 const Templates& templates) : | |
| 896 ListOfResources(context, level, templates) | |
| 897 { | |
| 898 } | |
| 899 }; | |
| 900 | |
| 901 | |
| 902 class OrthancWebDav::ListOfStudiesByDate : public ListOfResources | |
| 903 { | |
| 904 private: | |
| 905 std::string year_; | |
| 906 std::string month_; | |
| 907 | |
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908 class Visitor : public ResourceFinder::IVisitor |
| 4240 | 909 { |
| 910 private: | |
| 911 std::list<std::string>& resources_; | |
| 912 | |
| 913 public: | |
| 4253 | 914 explicit Visitor(std::list<std::string>& resources) : |
| 4240 | 915 resources_(resources) |
| 916 { | |
| 917 } | |
| 918 | |
| 919 virtual void MarkAsComplete() ORTHANC_OVERRIDE | |
| 920 { | |
| 921 } | |
| 922 | |
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923 virtual void Apply(const FindResponse::Resource& resource, |
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924 const DicomMap& requestedTags) ORTHANC_OVERRIDE |
| 4240 | 925 { |
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926 resources_.push_back(resource.GetIdentifier()); |
| 4240 | 927 } |
| 928 }; | |
| 929 | |
| 930 protected: | |
| 931 virtual void GetCurrentResources(std::list<std::string>& resources) ORTHANC_OVERRIDE | |
| 932 { | |
| 933 DatabaseLookup query; | |
| 934 query.AddRestConstraint(DICOM_TAG_STUDY_DATE, year_ + month_ + "01-" + year_ + month_ + "31", | |
| 935 true /* case sensitive */, true /* mandatory tag */); | |
| 936 | |
| 937 Visitor visitor(resources); | |
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938 |
| 5829 | 939 ResourceFinder finder(ResourceType_Study, ResponseContentFlags_ID); |
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940 finder.SetDatabaseLookup(query); |
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941 finder.Execute(visitor, GetContext()); |
| 4240 | 942 } |
| 943 | |
| 944 virtual INode* CreateResourceNode(const std::string& resource) ORTHANC_OVERRIDE | |
| 945 { | |
| 946 return new SingleDicomResource(GetContext(), ResourceType_Series, resource, GetTemplates()); | |
| 947 } | |
| 948 | |
| 949 public: | |
| 950 ListOfStudiesByDate(ServerContext& context, | |
| 951 const std::string& year, | |
| 952 const std::string& month, | |
| 953 const Templates& templates) : | |
| 954 ListOfResources(context, ResourceType_Study, templates), | |
| 955 year_(year), | |
| 956 month_(month) | |
| 957 { | |
| 958 if (year.size() != 4 || | |
| 959 month.size() != 2) | |
| 960 { | |
| 961 throw OrthancException(ErrorCode_ParameterOutOfRange); | |
| 962 } | |
| 963 } | |
| 964 }; | |
| 965 | |
| 966 | |
| 967 class OrthancWebDav::ListOfStudiesByMonth : public InternalNode | |
| 968 { | |
| 969 private: | |
| 970 ServerContext& context_; | |
| 971 std::string year_; | |
| 972 const Templates& templates_; | |
| 973 | |
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974 class Visitor : public ResourceFinder::IVisitor |
| 4240 | 975 { |
| 976 private: | |
| 977 std::set<std::string> months_; | |
| 978 | |
| 979 public: | |
| 980 const std::set<std::string>& GetMonths() const | |
| 981 { | |
| 982 return months_; | |
| 983 } | |
| 984 | |
| 985 virtual void MarkAsComplete() ORTHANC_OVERRIDE | |
| 986 { | |
| 987 } | |
| 988 | |
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989 virtual void Apply(const FindResponse::Resource& resource, |
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990 const DicomMap& requestedTags) ORTHANC_OVERRIDE |
| 4240 | 991 { |
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992 DicomMap mainDicomTags; |
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993 resource.GetMainDicomTags(mainDicomTags, ResourceType_Study); |
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994 |
| 4240 | 995 std::string s; |
| 996 if (mainDicomTags.LookupStringValue(s, DICOM_TAG_STUDY_DATE, false) && | |
| 997 s.size() == 8) | |
| 998 { | |
| 999 months_.insert(s.substr(4, 2)); // Get the month from "YYYYMMDD" | |
| 1000 } | |
| 1001 } | |
| 1002 }; | |
| 1003 | |
| 1004 protected: | |
| 1005 virtual void Refresh() ORTHANC_OVERRIDE | |
| 1006 { | |
| 1007 } | |
| 1008 | |
| 1009 virtual bool ListSubfolders(IWebDavBucket::Collection& target) ORTHANC_OVERRIDE | |
| 1010 { | |
| 1011 DatabaseLookup query; | |
| 1012 query.AddRestConstraint(DICOM_TAG_STUDY_DATE, year_ + "0101-" + year_ + "1231", | |
| 1013 true /* case sensitive */, true /* mandatory tag */); | |
| 1014 | |
| 1015 Visitor visitor; | |
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1016 |
| 5829 | 1017 ResourceFinder finder(ResourceType_Study, ResponseContentFlags_ID); |
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1018 finder.SetDatabaseLookup(query); |
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1019 finder.Execute(visitor, context_); |
| 4240 | 1020 |
| 1021 for (std::set<std::string>::const_iterator it = visitor.GetMonths().begin(); | |
| 1022 it != visitor.GetMonths().end(); ++it) | |
| 1023 { | |
| 1024 target.AddResource(new IWebDavBucket::Folder(year_ + "-" + *it)); | |
| 1025 } | |
| 1026 | |
| 1027 return true; | |
| 1028 } | |
| 1029 | |
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1030 virtual INode* CreateSubfolder(const std::string& path) ORTHANC_OVERRIDE |
| 4240 | 1031 { |
| 1032 if (path.size() != 7) // Format: "YYYY-MM" | |
| 1033 { | |
| 1034 throw OrthancException(ErrorCode_InternalError); | |
| 1035 } | |
| 1036 else | |
| 1037 { | |
| 1038 const std::string year = path.substr(0, 4); | |
| 1039 const std::string month = path.substr(5, 2); | |
| 1040 return new ListOfStudiesByDate(context_, year, month, templates_); | |
| 1041 } | |
| 1042 } | |
| 1043 | |
| 1044 public: | |
| 1045 ListOfStudiesByMonth(ServerContext& context, | |
| 1046 const std::string& year, | |
| 1047 const Templates& templates) : | |
| 1048 context_(context), | |
| 1049 year_(year), | |
| 1050 templates_(templates) | |
| 1051 { | |
| 1052 if (year_.size() != 4) | |
| 1053 { | |
| 1054 throw OrthancException(ErrorCode_ParameterOutOfRange); | |
| 1055 } | |
| 1056 } | |
| 1057 }; | |
| 1058 | |
| 1059 | |
| 1060 class OrthancWebDav::ListOfStudiesByYear : public InternalNode | |
| 1061 { | |
| 1062 private: | |
| 1063 ServerContext& context_; | |
| 1064 const Templates& templates_; | |
| 1065 | |
| 1066 protected: | |
| 1067 virtual void Refresh() ORTHANC_OVERRIDE | |
| 1068 { | |
| 1069 } | |
| 1070 | |
| 1071 virtual bool ListSubfolders(IWebDavBucket::Collection& target) ORTHANC_OVERRIDE | |
| 1072 { | |
| 1073 std::list<std::string> resources; | |
| 1074 context_.GetIndex().GetAllUuids(resources, ResourceType_Study); | |
| 1075 | |
| 1076 std::set<std::string> years; | |
| 1077 | |
| 1078 for (std::list<std::string>::const_iterator it = resources.begin(); it != resources.end(); ++it) | |
| 1079 { | |
| 1080 DicomMap tags; | |
| 1081 std::string studyDate; | |
| 1082 if (context_.GetIndex().GetMainDicomTags(tags, *it, ResourceType_Study, ResourceType_Study) && | |
| 1083 tags.LookupStringValue(studyDate, DICOM_TAG_STUDY_DATE, false) && | |
| 1084 studyDate.size() == 8) | |
| 1085 { | |
| 1086 years.insert(studyDate.substr(0, 4)); // Get the year from "YYYYMMDD" | |
| 1087 } | |
| 1088 } | |
| 1089 | |
| 1090 for (std::set<std::string>::const_iterator it = years.begin(); it != years.end(); ++it) | |
| 1091 { | |
| 1092 target.AddResource(new IWebDavBucket::Folder(*it)); | |
| 1093 } | |
| 1094 | |
| 1095 return true; | |
| 1096 } | |
| 1097 | |
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1098 virtual INode* CreateSubfolder(const std::string& path) ORTHANC_OVERRIDE |
| 4240 | 1099 { |
| 1100 return new ListOfStudiesByMonth(context_, path, templates_); | |
| 1101 } | |
| 1102 | |
| 1103 public: | |
| 1104 ListOfStudiesByYear(ServerContext& context, | |
| 1105 const Templates& templates) : | |
| 1106 context_(context), | |
| 1107 templates_(templates) | |
| 1108 { | |
| 1109 } | |
| 1110 }; | |
| 1111 | |
| 1112 | |
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1113 class OrthancWebDav::DicomDeleteVisitor : public ResourceFinder::IVisitor |
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1114 { |
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1115 private: |
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1116 ServerContext& context_; |
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1117 ResourceType level_; |
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1118 |
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1119 public: |
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1120 DicomDeleteVisitor(ServerContext& context, |
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1121 ResourceType level) : |
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1122 context_(context), |
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1123 level_(level) |
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1124 { |
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1125 } |
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1126 |
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1127 virtual void MarkAsComplete() ORTHANC_OVERRIDE |
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1128 { |
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1129 } |
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1130 |
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1131 virtual void Apply(const FindResponse::Resource& resource, |
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1132 const DicomMap& requestedTags) ORTHANC_OVERRIDE |
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1133 { |
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1134 Json::Value info; |
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1135 context_.DeleteResource(info, resource.GetIdentifier(), level_); |
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1136 } |
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1137 }; |
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1138 |
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1139 |
| 4240 | 1140 void OrthancWebDav::AddVirtualFile(Collection& collection, |
| 1141 const UriComponents& path, | |
| 1142 const std::string& filename) | |
| 1143 { | |
| 1144 MimeType mime; | |
| 1145 std::string content; | |
| 4246 | 1146 boost::posix_time::ptime modification; // Unused, let the date be set to "GetNow()" |
| 4240 | 1147 |
| 1148 UriComponents p = path; | |
| 1149 p.push_back(filename); | |
| 1150 | |
| 1151 if (GetFileContent(mime, content, modification, p)) | |
| 1152 { | |
| 1153 std::unique_ptr<File> f(new File(filename)); | |
| 1154 f->SetMimeType(mime); | |
| 1155 f->SetContentLength(content.size()); | |
| 1156 collection.AddResource(f.release()); | |
| 1157 } | |
| 1158 } | |
| 1159 | |
| 1160 | |
| 1161 void OrthancWebDav::UploadWorker(OrthancWebDav* that) | |
| 1162 { | |
|
5450
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|
1163 Logging::SetCurrentThreadName("WEBDAV-UPLOAD"); |
|
9ffd6d18daf3
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diff
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|
1164 |
| 4240 | 1165 assert(that != NULL); |
| 1166 | |
| 1167 boost::posix_time::ptime lastModification = GetNow(); | |
| 1168 | |
|
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configuration options for webdav
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|
1169 while (that->uploadRunning_) |
| 4240 | 1170 { |
| 1171 std::unique_ptr<IDynamicObject> obj(that->uploadQueue_.Dequeue(100)); | |
| 1172 if (obj.get() != NULL) | |
| 1173 { | |
| 1174 that->Upload(reinterpret_cast<const SingleValueObject<std::string>&>(*obj).GetValue()); | |
| 1175 lastModification = GetNow(); | |
| 1176 } | |
|
4245
c70df925151e
RequestOrigin_WebDav
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|
1177 else if (GetNow() - lastModification > boost::posix_time::seconds(30)) |
| 4240 | 1178 { |
|
4245
c70df925151e
RequestOrigin_WebDav
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diff
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|
1179 /** |
|
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|
1180 * After every 30 seconds of inactivity, remove the empty |
|
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RequestOrigin_WebDav
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|
1181 * folders. This delay is needed to avoid removing |
|
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|
1182 * just-created folders before the remote WebDAV has time to |
|
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|
1183 * write files into it. |
|
c70df925151e
RequestOrigin_WebDav
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|
1184 **/ |
|
4268
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new macro TLOG() to replace VLOG() for trace logs with a category
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|
1185 LOG(TRACE) << "Cleaning up the empty WebDAV upload folders"; |
| 4240 | 1186 that->uploads_.RemoveEmptyFolders(); |
| 1187 lastModification = GetNow(); | |
| 1188 } | |
| 1189 } | |
| 1190 } | |
| 1191 | |
| 1192 | |
| 1193 void OrthancWebDav::Upload(const std::string& path) | |
| 1194 { | |
| 1195 UriComponents uri; | |
| 1196 Toolbox::SplitUriComponents(uri, path); | |
| 1197 | |
| 1198 LOG(INFO) << "Upload from WebDAV: " << path; | |
| 1199 | |
| 1200 MimeType mime; | |
| 1201 std::string content; | |
| 1202 boost::posix_time::ptime time; | |
| 1203 if (uploads_.GetFileContent(mime, content, time, uri)) | |
| 1204 { | |
|
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|
1205 bool success = false; |
|
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1206 |
|
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|
1207 if (ZipReader::IsZipMemoryBuffer(content)) |
| 4240 | 1208 { |
|
4374
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there will be a 1.8.2 release before 1.9.0
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|
1209 // New in Orthanc 1.8.2 |
|
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|
1210 std::unique_ptr<ZipReader> reader(ZipReader::CreateFromMemory(content)); |
|
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|
1211 |
| 4386 | 1212 std::string filename, uncompressedFile; |
| 1213 while (reader->ReadNextFile(filename, uncompressedFile)) | |
|
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|
1214 { |
| 4386 | 1215 if (!uncompressedFile.empty()) |
|
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|
1216 { |
|
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|
1217 LOG(INFO) << "Uploading DICOM file extracted from a ZIP archive in WebDAV: " << filename; |
|
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|
1218 |
|
4508
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Optimization in C-STORE SCP by avoiding an unnecessary DICOM parsing
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|
1219 std::unique_ptr<DicomInstanceToStore> instance(DicomInstanceToStore::CreateFromBuffer(uncompressedFile)); |
|
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Optimization in C-STORE SCP by avoiding an unnecessary DICOM parsing
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|
1220 instance->SetOrigin(DicomInstanceOrigin::FromWebDav()); |
|
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|
1221 |
|
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|
1222 std::string publicId; |
|
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|
1223 |
|
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|
1224 try |
|
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|
1225 { |
|
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diff
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|
1226 context_.Store(publicId, *instance, StoreInstanceMode_Default); |
|
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|
1227 } |
|
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|
1228 catch (OrthancException& e) |
|
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|
1229 { |
|
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|
1230 if (e.GetErrorCode() == ErrorCode_BadFileFormat) |
|
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|
1231 { |
|
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|
1232 LOG(ERROR) << "Cannot import non-DICOM file from ZIP archive: " << filename; |
|
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|
1233 } |
|
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|
1234 } |
|
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|
1235 } |
|
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|
1236 } |
|
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|
1237 |
|
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|
1238 success = true; |
| 4240 | 1239 } |
|
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|
1240 else |
| 4240 | 1241 { |
|
4508
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Optimization in C-STORE SCP by avoiding an unnecessary DICOM parsing
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diff
changeset
|
1242 std::unique_ptr<DicomInstanceToStore> instance(DicomInstanceToStore::CreateFromBuffer(content)); |
|
8f9090b137f1
Optimization in C-STORE SCP by avoiding an unnecessary DICOM parsing
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diff
changeset
|
1243 instance->SetOrigin(DicomInstanceOrigin::FromWebDav()); |
|
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|
1244 |
|
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|
1245 try |
|
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|
1246 { |
|
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diff
changeset
|
1247 std::string publicId; |
|
4796
94616af363ec
added ReceivedCStoreInstanceFilter lua callback + OrthancPluginRegisterIncomingCStoreInstanceFilter in sdk
Alain Mazy <am@osimis.io>
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4697
diff
changeset
|
1248 ServerContext::StoreResult result = context_.Store(publicId, *instance, StoreInstanceMode_Default); |
|
94616af363ec
added ReceivedCStoreInstanceFilter lua callback + OrthancPluginRegisterIncomingCStoreInstanceFilter in sdk
Alain Mazy <am@osimis.io>
parents:
4697
diff
changeset
|
1249 if (result.GetStatus() == StoreStatus_Success || |
|
94616af363ec
added ReceivedCStoreInstanceFilter lua callback + OrthancPluginRegisterIncomingCStoreInstanceFilter in sdk
Alain Mazy <am@osimis.io>
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4697
diff
changeset
|
1250 result.GetStatus() == StoreStatus_AlreadyStored) |
|
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|
1251 { |
|
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|
1252 LOG(INFO) << "Successfully imported DICOM instance from WebDAV: " |
|
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|
1253 << path << " (Orthanc ID: " << publicId << ")"; |
|
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|
1254 success = true; |
|
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|
1255 } |
|
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|
1256 } |
|
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changeset
|
1257 catch (OrthancException& e) |
|
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|
1258 { |
|
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|
1259 } |
|
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|
1260 } |
|
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|
1261 |
|
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|
1262 uploads_.DeleteItem(uri); |
|
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|
1263 |
|
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|
1264 if (!success) |
|
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1265 { |
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|
1266 LOG(WARNING) << "Cannot import DICOM instance from WebWAV (maybe not a DICOM file): " << path; |
| 4240 | 1267 } |
| 1268 } | |
| 1269 } | |
| 1270 | |
| 1271 | |
|
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|
1272 OrthancWebDav::INode& OrthancWebDav::GetRootNode(const std::string& rootPath) |
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|
1273 { |
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1274 if (rootPath == BY_PATIENTS) |
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1275 { |
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1276 return *patients_; |
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1277 } |
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|
1278 else if (rootPath == BY_STUDIES) |
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1279 { |
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1280 return *studies_; |
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1281 } |
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|
1282 else if (rootPath == BY_DATES) |
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|
1283 { |
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1284 return *dates_; |
|
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1285 } |
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1286 else |
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|
1287 { |
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|
1288 throw OrthancException(ErrorCode_InternalError); |
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1289 } |
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1290 } |
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|
1291 |
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|
1292 |
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|
1293 OrthancWebDav::OrthancWebDav(ServerContext& context, |
|
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|
1294 bool allowDicomDelete, |
|
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|
1295 bool allowUpload) : |
| 4240 | 1296 context_(context), |
|
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|
1297 allowDicomDelete_(allowDicomDelete), |
|
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|
1298 allowUpload_(allowUpload), |
| 4240 | 1299 uploads_(false /* store uploads as temporary files */), |
|
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|
1300 uploadRunning_(false) |
| 4240 | 1301 { |
| 1302 patientsTemplates_[ResourceType_Patient] = "{{PatientID}} - {{PatientName}}"; | |
| 1303 patientsTemplates_[ResourceType_Study] = "{{StudyDate}} - {{StudyDescription}}"; | |
| 1304 patientsTemplates_[ResourceType_Series] = "{{Modality}} - {{SeriesDescription}}"; | |
| 1305 | |
| 1306 studiesTemplates_[ResourceType_Study] = "{{PatientID}} - {{PatientName}} - {{StudyDescription}}"; | |
| 1307 studiesTemplates_[ResourceType_Series] = patientsTemplates_[ResourceType_Series]; | |
| 1308 | |
| 1309 patients_.reset(new RootNode(context, ResourceType_Patient, patientsTemplates_)); | |
| 1310 studies_.reset(new RootNode(context, ResourceType_Study, studiesTemplates_)); | |
| 1311 dates_.reset(new ListOfStudiesByYear(context, studiesTemplates_)); | |
| 1312 } | |
| 1313 | |
| 1314 | |
| 1315 bool OrthancWebDav::IsExistingFolder(const UriComponents& path) | |
| 1316 { | |
| 1317 if (path.empty()) | |
| 1318 { | |
| 1319 return true; | |
| 1320 } | |
| 1321 else if (path[0] == BY_UIDS) | |
| 1322 { | |
| 1323 return (path.size() <= 3 && | |
|
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|
1324 (path.size() != 3 || path[2] != STUDY_INFO)); |
| 4240 | 1325 } |
|
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|
1326 else if (path[0] == BY_PATIENTS || |
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|
1327 path[0] == BY_STUDIES || |
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|
1328 path[0] == BY_DATES) |
| 4240 | 1329 { |
| 4252 | 1330 IWebDavBucket::Collection collection; |
| 1331 return GetRootNode(path[0]).ListCollection(collection, UriComponents(path.begin() + 1, path.end())); | |
| 4240 | 1332 } |
|
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|
1333 else if (allowUpload_ && |
|
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|
1334 path[0] == UPLOADS) |
| 4240 | 1335 { |
| 1336 return uploads_.IsExistingFolder(UriComponents(path.begin() + 1, path.end())); | |
| 1337 } | |
| 1338 else | |
| 1339 { | |
| 1340 return false; | |
| 1341 } | |
| 1342 } | |
| 1343 | |
| 1344 | |
| 1345 bool OrthancWebDav::ListCollection(Collection& collection, | |
| 1346 const UriComponents& path) | |
| 1347 { | |
| 1348 if (path.empty()) | |
| 1349 { | |
| 4241 | 1350 collection.AddResource(new Folder(BY_DATES)); |
| 4240 | 1351 collection.AddResource(new Folder(BY_PATIENTS)); |
| 1352 collection.AddResource(new Folder(BY_STUDIES)); | |
| 1353 collection.AddResource(new Folder(BY_UIDS)); | |
|
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|
1354 |
|
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|
1355 if (allowUpload_) |
|
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|
1356 { |
|
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|
1357 collection.AddResource(new Folder(UPLOADS)); |
|
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|
1358 } |
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|
1359 |
| 4240 | 1360 return true; |
| 1361 } | |
| 1362 else if (path[0] == BY_UIDS) | |
| 1363 { | |
| 1364 DatabaseLookup query; | |
| 1365 ResourceType level; | |
| 1366 | |
| 1367 if (path.size() == 1) | |
| 1368 { | |
| 1369 level = ResourceType_Study; | |
|
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|
1370 // TODO - Should we limit here? |
| 4240 | 1371 } |
| 1372 else if (path.size() == 2) | |
| 1373 { | |
|
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1374 AddVirtualFile(collection, path, STUDY_INFO); |
| 4240 | 1375 |
| 1376 level = ResourceType_Series; | |
| 1377 query.AddRestConstraint(DICOM_TAG_STUDY_INSTANCE_UID, path[1], | |
| 1378 true /* case sensitive */, true /* mandatory tag */); | |
| 1379 } | |
| 1380 else if (path.size() == 3) | |
| 1381 { | |
|
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|
1382 AddVirtualFile(collection, path, SERIES_INFO); |
| 4240 | 1383 |
| 1384 level = ResourceType_Instance; | |
| 1385 query.AddRestConstraint(DICOM_TAG_STUDY_INSTANCE_UID, path[1], | |
| 1386 true /* case sensitive */, true /* mandatory tag */); | |
| 1387 query.AddRestConstraint(DICOM_TAG_SERIES_INSTANCE_UID, path[2], | |
| 1388 true /* case sensitive */, true /* mandatory tag */); | |
| 1389 } | |
| 1390 else | |
| 1391 { | |
| 1392 return false; | |
| 1393 } | |
| 1394 | |
|
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Alain Mazy <am@orthanc.team>
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|
1395 ResourceFinder finder(level, ResponseContentFlags_ID); |
|
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1396 finder.SetDatabaseLookup(query); |
|
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1397 finder.SetRetrieveMetadata(true); |
|
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1398 |
|
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|
1399 switch (level) |
|
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|
1400 { |
|
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|
1401 case ResourceType_Study: |
|
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|
1402 finder.AddRequestedTag(DICOM_TAG_STUDY_INSTANCE_UID); |
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1403 break; |
|
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1404 |
|
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1405 case ResourceType_Series: |
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1406 finder.AddRequestedTag(DICOM_TAG_SERIES_INSTANCE_UID); |
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|
1407 break; |
|
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1408 |
|
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|
1409 case ResourceType_Instance: |
|
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1410 finder.AddRequestedTag(DICOM_TAG_SOP_INSTANCE_UID); |
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1411 finder.SetRetrieveAttachments(true); |
|
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|
1412 break; |
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1413 |
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1414 default: |
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1415 throw OrthancException(ErrorCode_InternalError); |
|
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1416 } |
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1417 |
|
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|
1418 DicomIdentifiersVisitorV2 visitor(collection); |
|
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1419 finder.Execute(visitor, context_); |
|
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1420 |
| 4240 | 1421 return true; |
| 1422 } | |
|
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1423 else if (path[0] == BY_PATIENTS || |
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1424 path[0] == BY_STUDIES || |
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1425 path[0] == BY_DATES) |
| 4240 | 1426 { |
|
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1427 return GetRootNode(path[0]).ListCollection(collection, UriComponents(path.begin() + 1, path.end())); |
| 4240 | 1428 } |
|
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1429 else if (allowUpload_ && |
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1430 path[0] == UPLOADS) |
| 4240 | 1431 { |
| 1432 return uploads_.ListCollection(collection, UriComponents(path.begin() + 1, path.end())); | |
| 1433 } | |
| 1434 else | |
| 1435 { | |
| 1436 return false; | |
| 1437 } | |
| 1438 } | |
| 1439 | |
| 1440 | |
|
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|
1441 static bool GetOrthancJson(std::string& target, |
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|
1442 ServerContext& context, |
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|
1443 ResourceType level, |
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|
1444 const DatabaseLookup& query) |
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|
1445 { |
| 5832 | 1446 ResourceFinder finder(level, ResponseContentFlags_ExpandTrue); |
|
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|
1447 finder.SetDatabaseLookup(query); |
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1448 |
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|
1449 Json::Value expanded; |
|
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1450 finder.Execute(expanded, context, DicomToJsonFormat_Human, false /* don't add "Metadata" */); |
|
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1451 |
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1452 if (expanded.size() != 1) |
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1453 { |
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1454 return false; |
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1455 } |
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1456 else |
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1457 { |
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1458 target = expanded[0].toStyledString(); |
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1459 |
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1460 // Replace UNIX newlines with DOS newlines |
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1461 boost::replace_all(target, "\n", "\r\n"); |
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1462 |
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1463 return true; |
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1464 } |
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1465 } |
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1466 |
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|
1467 |
| 4240 | 1468 bool OrthancWebDav::GetFileContent(MimeType& mime, |
| 1469 std::string& content, | |
| 1470 boost::posix_time::ptime& modificationTime, | |
| 1471 const UriComponents& path) | |
| 1472 { | |
| 1473 if (path.empty()) | |
| 1474 { | |
| 1475 return false; | |
| 1476 } | |
| 1477 else if (path[0] == BY_UIDS) | |
| 1478 { | |
| 1479 if (path.size() == 3 && | |
|
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|
1480 path[2] == STUDY_INFO) |
| 4240 | 1481 { |
| 1482 DatabaseLookup query; | |
| 1483 query.AddRestConstraint(DICOM_TAG_STUDY_INSTANCE_UID, path[1], | |
| 1484 true /* case sensitive */, true /* mandatory tag */); | |
| 1485 | |
| 1486 mime = MimeType_Json; | |
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1487 return GetOrthancJson(content, context_, ResourceType_Study, query); |
| 4240 | 1488 } |
| 1489 else if (path.size() == 4 && | |
|
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|
1490 path[3] == SERIES_INFO) |
| 4240 | 1491 { |
| 1492 DatabaseLookup query; | |
| 1493 query.AddRestConstraint(DICOM_TAG_STUDY_INSTANCE_UID, path[1], | |
| 1494 true /* case sensitive */, true /* mandatory tag */); | |
| 1495 query.AddRestConstraint(DICOM_TAG_SERIES_INSTANCE_UID, path[2], | |
| 1496 true /* case sensitive */, true /* mandatory tag */); | |
| 1497 | |
|
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|
1498 mime = MimeType_Json; |
|
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1499 return GetOrthancJson(content, context_, ResourceType_Series, query); |
| 4240 | 1500 } |
| 1501 else if (path.size() == 4 && | |
| 1502 boost::ends_with(path[3], ".dcm")) | |
| 1503 { | |
|
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|
1504 const std::string sopInstanceUid = path[3].substr(0, path[3].size() - 4); |
| 4240 | 1505 |
| 1506 DatabaseLookup query; | |
| 1507 query.AddRestConstraint(DICOM_TAG_STUDY_INSTANCE_UID, path[1], | |
| 1508 true /* case sensitive */, true /* mandatory tag */); | |
| 1509 query.AddRestConstraint(DICOM_TAG_SERIES_INSTANCE_UID, path[2], | |
| 1510 true /* case sensitive */, true /* mandatory tag */); | |
| 1511 query.AddRestConstraint(DICOM_TAG_SOP_INSTANCE_UID, sopInstanceUid, | |
| 1512 true /* case sensitive */, true /* mandatory tag */); | |
| 1513 | |
| 1514 mime = MimeType_Dicom; | |
|
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
1515 |
|
5833
58c549b881ae
merged find-refactoring -> find-refactoring-clean
Alain Mazy <am@orthanc.team>
diff
changeset
|
1516 ResourceFinder finder(ResourceType_Instance, ResponseContentFlags_ID); |
|
5706
1404a80dd461
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Sebastien Jodogne <s.jodogne@gmail.com>
diff
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|
1517 finder.SetDatabaseLookup(query); |
|
1404a80dd461
integration find-refactoring->find-refactoring-clean
Sebastien Jodogne <s.jodogne@gmail.com>
diff
changeset
|
1518 finder.SetRetrieveMetadata(true); |
|
1404a80dd461
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Sebastien Jodogne <s.jodogne@gmail.com>
diff
changeset
|
1519 finder.SetRetrieveAttachments(true); |
|
5705
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5702
diff
changeset
|
1520 |
|
5706
1404a80dd461
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Sebastien Jodogne <s.jodogne@gmail.com>
diff
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|
1521 DicomFileVisitorV2 visitor(context_, content, modificationTime); |
|
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Sebastien Jodogne <s.jodogne@gmail.com>
diff
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|
1522 finder.Execute(visitor, context_); |
|
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diff
changeset
|
1523 |
| 4240 | 1524 return visitor.IsSuccess(); |
| 1525 } | |
| 1526 else | |
| 1527 { | |
| 1528 return false; | |
| 1529 } | |
| 1530 } | |
|
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diff
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|
1531 else if (path[0] == BY_PATIENTS || |
|
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|
1532 path[0] == BY_STUDIES || |
|
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changeset
|
1533 path[0] == BY_DATES) |
| 4240 | 1534 { |
|
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diff
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|
1535 return GetRootNode(path[0]).GetFileContent(mime, content, modificationTime, UriComponents(path.begin() + 1, path.end())); |
| 4241 | 1536 } |
|
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diff
changeset
|
1537 else if (allowUpload_ && |
|
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
1538 path[0] == UPLOADS) |
| 4240 | 1539 { |
| 1540 return uploads_.GetFileContent(mime, content, modificationTime, UriComponents(path.begin() + 1, path.end())); | |
| 1541 } | |
| 1542 else | |
| 1543 { | |
| 1544 return false; | |
| 1545 } | |
| 1546 } | |
| 1547 | |
| 1548 | |
| 1549 bool OrthancWebDav::StoreFile(const std::string& content, | |
| 1550 const UriComponents& path) | |
| 1551 { | |
|
4243
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changeset
|
1552 if (allowUpload_ && |
|
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
1553 path.size() >= 1 && |
| 4240 | 1554 path[0] == UPLOADS) |
| 1555 { | |
| 1556 UriComponents subpath(UriComponents(path.begin() + 1, path.end())); | |
| 1557 | |
| 1558 if (uploads_.StoreFile(content, subpath)) | |
| 1559 { | |
| 1560 if (!content.empty()) | |
| 1561 { | |
| 1562 uploadQueue_.Enqueue(new SingleValueObject<std::string>(Toolbox::FlattenUri(subpath))); | |
| 1563 } | |
| 1564 return true; | |
| 1565 } | |
| 1566 else | |
| 1567 { | |
| 1568 return false; | |
| 1569 } | |
| 1570 } | |
| 1571 else | |
| 1572 { | |
| 1573 return false; | |
| 1574 } | |
| 1575 } | |
| 1576 | |
| 1577 | |
| 1578 bool OrthancWebDav::CreateFolder(const UriComponents& path) | |
| 1579 { | |
|
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diff
changeset
|
1580 if (allowUpload_ && |
|
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
1581 path.size() >= 1 && |
| 4240 | 1582 path[0] == UPLOADS) |
| 1583 { | |
| 1584 return uploads_.CreateFolder(UriComponents(path.begin() + 1, path.end())); | |
| 1585 } | |
| 1586 else | |
| 1587 { | |
| 1588 return false; | |
| 1589 } | |
| 1590 } | |
| 1591 | |
| 1592 | |
| 1593 bool OrthancWebDav::DeleteItem(const std::vector<std::string>& path) | |
| 1594 { | |
|
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diff
changeset
|
1595 if (path.empty()) |
|
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diff
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|
1596 { |
|
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diff
changeset
|
1597 return false; |
|
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|
1598 } |
|
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diff
changeset
|
1599 else if (path[0] == BY_UIDS && |
|
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|
1600 path.size() >= 2 && |
|
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diff
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|
1601 path.size() <= 4) |
|
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|
1602 { |
|
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changeset
|
1603 if (allowDicomDelete_) |
|
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|
1604 { |
|
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diff
changeset
|
1605 ResourceType level; |
|
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diff
changeset
|
1606 DatabaseLookup query; |
|
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|
1607 |
|
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diff
changeset
|
1608 query.AddRestConstraint(DICOM_TAG_STUDY_INSTANCE_UID, path[1], |
|
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|
1609 true /* case sensitive */, true /* mandatory tag */); |
|
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changeset
|
1610 level = ResourceType_Study; |
|
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|
1611 |
|
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diff
changeset
|
1612 if (path.size() >= 3) |
|
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changeset
|
1613 { |
|
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diff
changeset
|
1614 if (path[2] == STUDY_INFO) |
|
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diff
changeset
|
1615 { |
| 4252 | 1616 return true; // Allow deletion of virtual files (to avoid blocking recursive DELETE) |
|
4242
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diff
changeset
|
1617 } |
|
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diff
changeset
|
1618 |
|
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diff
changeset
|
1619 query.AddRestConstraint(DICOM_TAG_SERIES_INSTANCE_UID, path[2], |
|
5cfa6ba75dfc
deleting resources from Orthanc WebDAV
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diff
changeset
|
1620 true /* case sensitive */, true /* mandatory tag */); |
|
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diff
changeset
|
1621 level = ResourceType_Series; |
|
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changeset
|
1622 } |
|
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diff
changeset
|
1623 |
|
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diff
changeset
|
1624 if (path.size() == 4) |
|
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changeset
|
1625 { |
|
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diff
changeset
|
1626 if (path[3] == SERIES_INFO) |
|
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diff
changeset
|
1627 { |
| 4252 | 1628 return true; // Allow deletion of virtual files (to avoid blocking recursive DELETE) |
|
4242
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diff
changeset
|
1629 } |
|
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diff
changeset
|
1630 else if (boost::ends_with(path[3], ".dcm")) |
|
5cfa6ba75dfc
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diff
changeset
|
1631 { |
|
5cfa6ba75dfc
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diff
changeset
|
1632 const std::string sopInstanceUid = path[3].substr(0, path[3].size() - 4); |
|
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changeset
|
1633 |
|
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diff
changeset
|
1634 query.AddRestConstraint(DICOM_TAG_SOP_INSTANCE_UID, sopInstanceUid, |
|
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changeset
|
1635 true /* case sensitive */, true /* mandatory tag */); |
|
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changeset
|
1636 level = ResourceType_Instance; |
|
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changeset
|
1637 } |
|
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diff
changeset
|
1638 else |
|
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changeset
|
1639 { |
|
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diff
changeset
|
1640 return false; |
|
5cfa6ba75dfc
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diff
changeset
|
1641 } |
|
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changeset
|
1642 } |
|
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changeset
|
1643 |
|
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diff
changeset
|
1644 DicomDeleteVisitor visitor(context_, level); |
|
5705
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Sebastien Jodogne <s.jodogne@gmail.com>
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changeset
|
1645 |
| 5829 | 1646 ResourceFinder finder(level, ResponseContentFlags_ID); |
|
5705
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diff
changeset
|
1647 finder.SetDatabaseLookup(query); |
|
eb56ee3c5d63
removed dependency of OrthancWebDav on ServerContext::ILookupVisitor
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changeset
|
1648 finder.Execute(visitor, context_); |
|
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changeset
|
1649 return true; |
|
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changeset
|
1650 } |
|
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changeset
|
1651 else |
|
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changeset
|
1652 { |
|
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changeset
|
1653 return false; // read-only |
|
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changeset
|
1654 } |
|
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changeset
|
1655 } |
|
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changeset
|
1656 else if (path[0] == BY_PATIENTS || |
|
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changeset
|
1657 path[0] == BY_STUDIES || |
|
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changeset
|
1658 path[0] == BY_DATES) |
|
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changeset
|
1659 { |
|
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changeset
|
1660 if (allowDicomDelete_) |
|
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changeset
|
1661 { |
|
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changeset
|
1662 return GetRootNode(path[0]).DeleteItem(UriComponents(path.begin() + 1, path.end())); |
|
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changeset
|
1663 } |
|
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changeset
|
1664 else |
|
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changeset
|
1665 { |
|
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changeset
|
1666 return false; // read-only |
|
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changeset
|
1667 } |
|
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changeset
|
1668 } |
|
4243
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changeset
|
1669 else if (allowUpload_ && |
|
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changeset
|
1670 path[0] == UPLOADS) |
| 4240 | 1671 { |
| 1672 return uploads_.DeleteItem(UriComponents(path.begin() + 1, path.end())); | |
| 1673 } | |
| 1674 else | |
| 1675 { | |
|
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changeset
|
1676 return false; |
| 4240 | 1677 } |
| 1678 } | |
| 1679 | |
| 1680 | |
| 1681 void OrthancWebDav::Start() | |
| 1682 { | |
|
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changeset
|
1683 if (uploadRunning_) |
| 4240 | 1684 { |
| 1685 throw OrthancException(ErrorCode_BadSequenceOfCalls); | |
| 1686 } | |
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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1687 else if (allowUpload_) |
| 4240 | 1688 { |
| 1689 LOG(INFO) << "Starting the WebDAV upload thread"; | |
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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1690 uploadRunning_ = true; |
| 4240 | 1691 uploadThread_ = boost::thread(UploadWorker, this); |
| 1692 } | |
| 1693 } | |
| 1694 | |
| 1695 | |
| 1696 void OrthancWebDav::Stop() | |
| 1697 { | |
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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1698 if (uploadRunning_) |
| 4240 | 1699 { |
| 1700 LOG(INFO) << "Stopping the WebDAV upload thread"; | |
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1701 uploadRunning_ = false; |
| 4240 | 1702 if (uploadThread_.joinable()) |
| 1703 { | |
| 1704 uploadThread_.join(); | |
| 1705 } | |
| 1706 } | |
| 1707 } | |
| 1708 } |