Mercurial > hg > orthanc
annotate OrthancServer/Resources/Samples/ImportDicomFiles/ImportDicomFiles.py @ 4973:17c91e054636
minor improvements
author | Sebastien Jodogne <s.jodogne@gmail.com> |
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date | Thu, 07 Apr 2022 12:04:48 +0200 |
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1 #!/usr/bin/env python |
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2 |
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3 # Orthanc - A Lightweight, RESTful DICOM Store |
1900 | 4 # Copyright (C) 2012-2016 Sebastien Jodogne, Medical Physics |
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5 # Department, University Hospital of Liege, Belgium |
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6 # Copyright (C) 2017-2022 Osimis S.A., Belgium |
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7 # Copyright (C) 2021-2022 Sebastien Jodogne, ICTEAM UCLouvain, Belgium |
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8 # |
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9 # This program is free software: you can redistribute it and/or |
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10 # modify it under the terms of the GNU General Public License as |
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11 # published by the Free Software Foundation, either version 3 of the |
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12 # License, or (at your option) any later version. |
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13 # |
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14 # This program is distributed in the hope that it will be useful, but |
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15 # WITHOUT ANY WARRANTY; without even the implied warranty of |
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16 # MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU |
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17 # General Public License for more details. |
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18 # |
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19 # You should have received a copy of the GNU General Public License |
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20 # along with this program. If not, see <http://www.gnu.org/licenses/>. |
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21 |
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22 |
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23 import base64 |
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24 import httplib2 |
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25 import json |
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26 import os |
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27 import os.path |
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28 import sys |
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29 |
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31 print(""" |
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32 Sample script to recursively import in Orthanc all the DICOM files |
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33 that are stored in some path. Please make sure that Orthanc is running |
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34 before starting this script. The files are uploaded through the REST |
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35 API. |
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36 |
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37 Usage: %s [hostname] [HTTP port] [path] |
370 | 38 Usage: %s [hostname] [HTTP port] [path] [username] [password] |
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39 For instance: %s 127.0.0.1 8042 . |
370 | 40 """ % (sys.argv[0], sys.argv[0], sys.argv[0])) |
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41 exit(-1) |
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42 |
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43 URL = 'http://%s:%d/instances' % (sys.argv[1], int(sys.argv[2])) |
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44 |
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45 dicom_count = 0 |
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46 json_count = 0 |
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47 total_file_count = 0 |
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48 |
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49 |
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50 def IsJson(content): |
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51 try: |
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52 if (sys.version_info >= (3, 0)): |
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53 json.loads(content.decode()) |
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54 return True |
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55 else: |
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56 json.loads(content) |
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57 return True |
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58 except: |
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59 return False |
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60 |
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61 |
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62 # This function will upload a single file to Orthanc through the REST API |
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63 def UploadFile(path): |
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64 global dicom_count |
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65 global json_count |
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66 global total_file_count |
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67 |
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68 f = open(path, 'rb') |
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69 content = f.read() |
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70 f.close() |
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71 total_file_count += 1 |
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72 |
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73 sys.stdout.write('Importing %s' % path) |
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74 |
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75 if IsJson(content): |
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76 sys.stdout.write(' => ignored JSON file\n') |
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77 json_count += 1 |
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78 return |
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79 |
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80 try: |
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81 h = httplib2.Http() |
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83 headers = { 'content-type' : 'application/dicom' } |
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84 |
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86 username = sys.argv[4] |
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87 password = sys.argv[5] |
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88 |
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89 # h.add_credentials(username, password) |
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90 |
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91 # This is a custom reimplementation of the |
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92 # "Http.add_credentials()" method for Basic HTTP Access |
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93 # Authentication (for some weird reason, this method does |
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94 # not always work) |
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95 # http://en.wikipedia.org/wiki/Basic_access_authentication |
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96 creds_str = username + ':' + password |
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97 creds_str_bytes = creds_str.encode('ascii') |
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98 creds_str_bytes_b64 = b'Basic ' + base64.b64encode(creds_str_bytes) |
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99 headers['authorization'] = creds_str_bytes_b64.decode('ascii') |
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100 |
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101 resp, content = h.request(URL, 'POST', |
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102 body = content, |
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103 headers = headers) |
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104 |
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105 if resp.status == 200: |
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106 sys.stdout.write(' => success\n') |
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107 dicom_count += 1 |
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108 else: |
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109 sys.stdout.write(' => failure (Is it a DICOM file? Is there a password?)\n') |
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110 |
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111 except: |
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112 type, value, traceback = sys.exc_info() |
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113 sys.stderr.write(str(value)) |
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114 sys.stdout.write(' => unable to connect (Is Orthanc running? Is there a password?)\n') |
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115 |
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116 |
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117 if os.path.isfile(sys.argv[3]): |
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118 # Upload a single file |
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119 UploadFile(sys.argv[3]) |
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120 else: |
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121 # Recursively upload a directory |
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122 for root, dirs, files in os.walk(sys.argv[3]): |
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123 for f in files: |
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124 UploadFile(os.path.join(root, f)) |
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125 |
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126 |
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127 if dicom_count + json_count == total_file_count: |
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128 print('\nSUCCESS: %d DICOM file(s) have been successfully imported' % dicom_count) |
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129 else: |
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130 print('\nWARNING: Only %d out of %d file(s) have been successfully imported as DICOM instance(s)' % (dicom_count, total_file_count - json_count)) |
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131 |
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132 if json_count != 0: |
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133 print('NB: %d JSON file(s) have been ignored' % json_count) |
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134 |
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135 print('') |