Mercurial > hg > orthanc
annotate OrthancServer/DatabaseWrapper.cpp @ 1164:0a55d8eb194e
Configuration/Lua to select the accepted C-Store SCP transfer syntaxes
| author | Sebastien Jodogne <s.jodogne@gmail.com> |
|---|---|
| date | Thu, 18 Sep 2014 17:18:26 +0200 |
| parents | 649d47854314 |
| children | badc14fee61f |
| rev | line source |
|---|---|
| 183 | 1 /** |
| 2 * Orthanc - A Lightweight, RESTful DICOM Store | |
| 689 | 3 * Copyright (C) 2012-2014 Medical Physics Department, CHU of Liege, |
| 183 | 4 * Belgium |
| 5 * | |
| 6 * This program is free software: you can redistribute it and/or | |
| 7 * modify it under the terms of the GNU General Public License as | |
| 8 * published by the Free Software Foundation, either version 3 of the | |
| 9 * License, or (at your option) any later version. | |
| 10 * | |
| 11 * In addition, as a special exception, the copyright holders of this | |
| 12 * program give permission to link the code of its release with the | |
| 13 * OpenSSL project's "OpenSSL" library (or with modified versions of it | |
| 14 * that use the same license as the "OpenSSL" library), and distribute | |
| 15 * the linked executables. You must obey the GNU General Public License | |
| 16 * in all respects for all of the code used other than "OpenSSL". If you | |
| 17 * modify file(s) with this exception, you may extend this exception to | |
| 18 * your version of the file(s), but you are not obligated to do so. If | |
| 19 * you do not wish to do so, delete this exception statement from your | |
| 20 * version. If you delete this exception statement from all source files | |
| 21 * in the program, then also delete it here. | |
| 22 * | |
| 23 * This program is distributed in the hope that it will be useful, but | |
| 24 * WITHOUT ANY WARRANTY; without even the implied warranty of | |
| 25 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU | |
| 26 * General Public License for more details. | |
| 27 * | |
| 28 * You should have received a copy of the GNU General Public License | |
| 29 * along with this program. If not, see <http://www.gnu.org/licenses/>. | |
| 30 **/ | |
| 31 | |
| 32 | |
|
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33 #include "PrecompiledHeadersServer.h" |
| 183 | 34 #include "DatabaseWrapper.h" |
| 35 | |
| 36 #include "../Core/DicomFormat/DicomArray.h" | |
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37 #include "../Core/Uuid.h" |
| 183 | 38 #include "EmbeddedResources.h" |
| 39 | |
| 40 #include <glog/logging.h> | |
| 41 #include <stdio.h> | |
| 42 | |
| 43 namespace Orthanc | |
| 44 { | |
| 45 | |
| 46 namespace Internals | |
| 47 { | |
| 48 class SignalFileDeleted : public SQLite::IScalarFunction | |
| 49 { | |
| 50 private: | |
| 51 IServerIndexListener& listener_; | |
| 52 | |
| 53 public: | |
| 54 SignalFileDeleted(IServerIndexListener& listener) : | |
| 55 listener_(listener) | |
| 56 { | |
| 57 } | |
| 58 | |
| 59 virtual const char* GetName() const | |
| 60 { | |
| 61 return "SignalFileDeleted"; | |
| 62 } | |
| 63 | |
| 64 virtual unsigned int GetCardinality() const | |
| 65 { | |
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66 return 7; |
| 183 | 67 } |
| 68 | |
| 69 virtual void Compute(SQLite::FunctionContext& context) | |
| 70 { | |
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71 std::string uncompressedMD5, compressedMD5; |
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72 |
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73 if (!context.IsNullValue(5)) |
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74 { |
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75 uncompressedMD5 = context.GetStringValue(5); |
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76 } |
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77 |
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78 if (!context.IsNullValue(6)) |
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79 { |
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80 compressedMD5 = context.GetStringValue(6); |
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81 } |
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82 |
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83 FileInfo info(context.GetStringValue(0), |
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84 static_cast<FileContentType>(context.GetIntValue(1)), |
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85 static_cast<uint64_t>(context.GetInt64Value(2)), |
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86 uncompressedMD5, |
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87 static_cast<CompressionType>(context.GetIntValue(3)), |
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88 static_cast<uint64_t>(context.GetInt64Value(4)), |
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89 compressedMD5); |
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90 |
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91 listener_.SignalFileDeleted(info); |
| 183 | 92 } |
| 93 }; | |
| 94 | |
| 95 class SignalRemainingAncestor : public SQLite::IScalarFunction | |
| 96 { | |
| 97 private: | |
| 98 bool hasRemainingAncestor_; | |
| 99 std::string remainingPublicId_; | |
| 100 ResourceType remainingType_; | |
| 101 | |
| 102 public: | |
| 660 | 103 SignalRemainingAncestor() : |
| 104 hasRemainingAncestor_(false) | |
| 105 { | |
| 106 } | |
| 107 | |
| 183 | 108 void Reset() |
| 109 { | |
| 110 hasRemainingAncestor_ = false; | |
| 111 } | |
| 112 | |
| 113 virtual const char* GetName() const | |
| 114 { | |
| 115 return "SignalRemainingAncestor"; | |
| 116 } | |
| 117 | |
| 118 virtual unsigned int GetCardinality() const | |
| 119 { | |
| 120 return 2; | |
| 121 } | |
| 122 | |
| 123 virtual void Compute(SQLite::FunctionContext& context) | |
| 124 { | |
| 125 VLOG(1) << "There exists a remaining ancestor with public ID \"" | |
| 126 << context.GetStringValue(0) | |
| 127 << "\" of type " | |
| 128 << context.GetIntValue(1); | |
| 129 | |
| 130 if (!hasRemainingAncestor_ || | |
| 131 remainingType_ >= context.GetIntValue(1)) | |
| 132 { | |
| 133 hasRemainingAncestor_ = true; | |
| 134 remainingPublicId_ = context.GetStringValue(0); | |
| 135 remainingType_ = static_cast<ResourceType>(context.GetIntValue(1)); | |
| 136 } | |
| 137 } | |
| 138 | |
| 139 bool HasRemainingAncestor() const | |
| 140 { | |
| 141 return hasRemainingAncestor_; | |
| 142 } | |
| 143 | |
| 144 const std::string& GetRemainingAncestorId() const | |
| 145 { | |
| 146 assert(hasRemainingAncestor_); | |
| 147 return remainingPublicId_; | |
| 148 } | |
| 149 | |
| 150 ResourceType GetRemainingAncestorType() const | |
| 151 { | |
| 152 assert(hasRemainingAncestor_); | |
| 153 return remainingType_; | |
| 154 } | |
| 155 }; | |
| 156 } | |
| 157 | |
| 158 | |
| 159 | |
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160 void DatabaseWrapper::SetGlobalProperty(GlobalProperty property, |
| 183 | 161 const std::string& value) |
| 162 { | |
| 163 SQLite::Statement s(db_, SQLITE_FROM_HERE, "INSERT OR REPLACE INTO GlobalProperties VALUES(?, ?)"); | |
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164 s.BindInt(0, property); |
| 183 | 165 s.BindString(1, value); |
| 166 s.Run(); | |
| 167 } | |
| 168 | |
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169 bool DatabaseWrapper::LookupGlobalProperty(std::string& target, |
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170 GlobalProperty property) |
| 183 | 171 { |
| 172 SQLite::Statement s(db_, SQLITE_FROM_HERE, | |
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173 "SELECT value FROM GlobalProperties WHERE property=?"); |
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174 s.BindInt(0, property); |
| 183 | 175 |
| 176 if (!s.Step()) | |
| 177 { | |
| 178 return false; | |
| 179 } | |
| 180 else | |
| 181 { | |
| 182 target = s.ColumnString(0); | |
| 183 return true; | |
| 184 } | |
| 185 } | |
| 186 | |
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187 std::string DatabaseWrapper::GetGlobalProperty(GlobalProperty property, |
| 183 | 188 const std::string& defaultValue) |
| 189 { | |
| 190 std::string s; | |
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191 if (LookupGlobalProperty(s, property)) |
| 183 | 192 { |
| 193 return s; | |
| 194 } | |
| 195 else | |
| 196 { | |
| 197 return defaultValue; | |
| 198 } | |
| 199 } | |
| 200 | |
| 201 int64_t DatabaseWrapper::CreateResource(const std::string& publicId, | |
| 202 ResourceType type) | |
| 203 { | |
| 204 SQLite::Statement s(db_, SQLITE_FROM_HERE, "INSERT INTO Resources VALUES(NULL, ?, ?, NULL)"); | |
| 205 s.BindInt(0, type); | |
| 206 s.BindString(1, publicId); | |
| 207 s.Run(); | |
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208 int64_t id = db_.GetLastInsertRowId(); |
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209 |
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210 ChangeType changeType; |
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211 switch (type) |
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212 { |
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213 case ResourceType_Patient: |
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214 changeType = ChangeType_NewPatient; |
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215 break; |
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216 |
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217 case ResourceType_Study: |
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218 changeType = ChangeType_NewStudy; |
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219 break; |
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220 |
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221 case ResourceType_Series: |
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222 changeType = ChangeType_NewSeries; |
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223 break; |
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224 |
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225 case ResourceType_Instance: |
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226 changeType = ChangeType_NewInstance; |
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227 break; |
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228 |
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229 default: |
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230 throw OrthancException(ErrorCode_InternalError); |
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231 } |
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232 |
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233 LogChange(changeType, id, type); |
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234 return id; |
| 183 | 235 } |
| 236 | |
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237 bool DatabaseWrapper::LookupResource(const std::string& publicId, |
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238 int64_t& id, |
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239 ResourceType& type) |
| 183 | 240 { |
| 241 SQLite::Statement s(db_, SQLITE_FROM_HERE, | |
| 242 "SELECT internalId, resourceType FROM Resources WHERE publicId=?"); | |
| 243 s.BindString(0, publicId); | |
| 244 | |
| 245 if (!s.Step()) | |
| 246 { | |
| 247 return false; | |
| 248 } | |
| 249 else | |
| 250 { | |
| 251 id = s.ColumnInt(0); | |
| 252 type = static_cast<ResourceType>(s.ColumnInt(1)); | |
| 253 | |
| 254 // Check whether there is a single resource with this public id | |
| 255 assert(!s.Step()); | |
| 256 | |
| 257 return true; | |
| 258 } | |
| 259 } | |
| 260 | |
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261 bool DatabaseWrapper::LookupParent(int64_t& parentId, |
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262 int64_t resourceId) |
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263 { |
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264 SQLite::Statement s(db_, SQLITE_FROM_HERE, |
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265 "SELECT parentId FROM Resources WHERE internalId=?"); |
| 585 | 266 s.BindInt64(0, resourceId); |
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267 |
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268 if (!s.Step()) |
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269 { |
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270 throw OrthancException(ErrorCode_UnknownResource); |
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271 } |
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272 |
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273 if (s.ColumnIsNull(0)) |
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274 { |
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275 return false; |
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276 } |
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277 else |
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278 { |
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279 parentId = s.ColumnInt(0); |
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280 return true; |
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281 } |
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282 } |
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283 |
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284 std::string DatabaseWrapper::GetPublicId(int64_t resourceId) |
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285 { |
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286 SQLite::Statement s(db_, SQLITE_FROM_HERE, |
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287 "SELECT publicId FROM Resources WHERE internalId=?"); |
| 585 | 288 s.BindInt64(0, resourceId); |
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289 |
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290 if (!s.Step()) |
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291 { |
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292 throw OrthancException(ErrorCode_UnknownResource); |
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293 } |
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294 |
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295 return s.ColumnString(0); |
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296 } |
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297 |
| 304 | 298 |
| 299 ResourceType DatabaseWrapper::GetResourceType(int64_t resourceId) | |
| 300 { | |
| 301 SQLite::Statement s(db_, SQLITE_FROM_HERE, | |
| 302 "SELECT resourceType FROM Resources WHERE internalId=?"); | |
| 585 | 303 s.BindInt64(0, resourceId); |
| 304 | 304 |
| 305 if (!s.Step()) | |
| 306 { | |
| 307 throw OrthancException(ErrorCode_UnknownResource); | |
| 308 } | |
| 309 | |
| 310 return static_cast<ResourceType>(s.ColumnInt(0)); | |
| 311 } | |
| 312 | |
| 313 | |
| 183 | 314 void DatabaseWrapper::AttachChild(int64_t parent, |
| 315 int64_t child) | |
| 316 { | |
| 317 SQLite::Statement s(db_, SQLITE_FROM_HERE, "UPDATE Resources SET parentId = ? WHERE internalId = ?"); | |
| 585 | 318 s.BindInt64(0, parent); |
| 319 s.BindInt64(1, child); | |
| 183 | 320 s.Run(); |
| 321 } | |
| 322 | |
|
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323 void DatabaseWrapper::GetChildren(Json::Value& childrenPublicIds, |
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324 int64_t id) |
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325 { |
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326 SQLite::Statement s(db_, SQLITE_FROM_HERE, "SELECT publicId FROM Resources WHERE parentId=?"); |
| 585 | 327 s.BindInt64(0, id); |
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328 |
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329 childrenPublicIds = Json::arrayValue; |
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330 while (s.Step()) |
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331 { |
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332 childrenPublicIds.append(s.ColumnString(0)); |
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333 } |
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334 } |
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335 |
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336 |
| 183 | 337 void DatabaseWrapper::DeleteResource(int64_t id) |
| 338 { | |
| 339 signalRemainingAncestor_->Reset(); | |
| 340 | |
| 341 SQLite::Statement s(db_, SQLITE_FROM_HERE, "DELETE FROM Resources WHERE internalId=?"); | |
| 585 | 342 s.BindInt64(0, id); |
| 183 | 343 s.Run(); |
| 344 | |
| 345 if (signalRemainingAncestor_->HasRemainingAncestor()) | |
| 346 { | |
| 347 listener_.SignalRemainingAncestor(signalRemainingAncestor_->GetRemainingAncestorType(), | |
| 348 signalRemainingAncestor_->GetRemainingAncestorId()); | |
| 349 } | |
| 350 } | |
| 351 | |
| 352 void DatabaseWrapper::SetMetadata(int64_t id, | |
| 353 MetadataType type, | |
| 354 const std::string& value) | |
| 355 { | |
| 356 SQLite::Statement s(db_, SQLITE_FROM_HERE, "INSERT OR REPLACE INTO Metadata VALUES(?, ?, ?)"); | |
| 585 | 357 s.BindInt64(0, id); |
| 183 | 358 s.BindInt(1, type); |
| 359 s.BindString(2, value); | |
| 360 s.Run(); | |
| 361 } | |
| 362 | |
| 438 | 363 void DatabaseWrapper::DeleteMetadata(int64_t id, |
| 364 MetadataType type) | |
| 365 { | |
| 366 SQLite::Statement s(db_, SQLITE_FROM_HERE, "DELETE FROM Metadata WHERE id=? and type=?"); | |
| 585 | 367 s.BindInt64(0, id); |
| 438 | 368 s.BindInt(1, type); |
| 369 s.Run(); | |
| 370 } | |
| 371 | |
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372 bool DatabaseWrapper::LookupMetadata(std::string& target, |
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373 int64_t id, |
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374 MetadataType type) |
| 183 | 375 { |
| 376 SQLite::Statement s(db_, SQLITE_FROM_HERE, | |
| 377 "SELECT value FROM Metadata WHERE id=? AND type=?"); | |
| 585 | 378 s.BindInt64(0, id); |
| 183 | 379 s.BindInt(1, type); |
| 380 | |
| 381 if (!s.Step()) | |
| 382 { | |
| 383 return false; | |
| 384 } | |
| 385 else | |
| 386 { | |
| 387 target = s.ColumnString(0); | |
| 388 return true; | |
| 389 } | |
| 390 } | |
| 391 | |
| 739 | 392 void DatabaseWrapper::ListAvailableMetadata(std::list<MetadataType>& target, |
|
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393 int64_t id) |
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394 { |
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395 target.clear(); |
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396 |
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397 SQLite::Statement s(db_, SQLITE_FROM_HERE, "SELECT type FROM Metadata WHERE id=?"); |
| 585 | 398 s.BindInt64(0, id); |
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399 |
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400 while (s.Step()) |
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401 { |
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402 target.push_back(static_cast<MetadataType>(s.ColumnInt(0))); |
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403 } |
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404 } |
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405 |
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406 |
| 183 | 407 std::string DatabaseWrapper::GetMetadata(int64_t id, |
| 408 MetadataType type, | |
| 409 const std::string& defaultValue) | |
| 410 { | |
| 411 std::string s; | |
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412 if (LookupMetadata(s, id, type)) |
| 183 | 413 { |
| 414 return s; | |
| 415 } | |
| 416 else | |
| 417 { | |
| 418 return defaultValue; | |
| 419 } | |
| 420 } | |
| 421 | |
|
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422 |
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423 bool DatabaseWrapper::GetMetadataAsInteger(int& result, |
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424 int64_t id, |
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425 MetadataType type) |
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426 { |
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427 std::string s = GetMetadata(id, type, ""); |
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428 if (s.size() == 0) |
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429 { |
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430 return false; |
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431 } |
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432 |
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433 try |
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434 { |
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435 result = boost::lexical_cast<int>(s); |
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436 return true; |
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437 } |
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438 catch (boost::bad_lexical_cast&) |
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439 { |
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440 return false; |
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441 } |
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442 } |
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443 |
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444 |
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445 |
|
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446 void DatabaseWrapper::AddAttachment(int64_t id, |
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447 const FileInfo& attachment) |
| 183 | 448 { |
|
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449 SQLite::Statement s(db_, SQLITE_FROM_HERE, "INSERT INTO AttachedFiles VALUES(?, ?, ?, ?, ?, ?, ?, ?)"); |
| 585 | 450 s.BindInt64(0, id); |
| 233 | 451 s.BindInt(1, attachment.GetContentType()); |
|
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452 s.BindString(2, attachment.GetUuid()); |
| 585 | 453 s.BindInt64(3, attachment.GetCompressedSize()); |
| 454 s.BindInt64(4, attachment.GetUncompressedSize()); | |
|
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455 s.BindInt(5, attachment.GetCompressionType()); |
|
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456 s.BindString(6, attachment.GetUncompressedMD5()); |
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457 s.BindString(7, attachment.GetCompressedMD5()); |
| 183 | 458 s.Run(); |
| 459 } | |
| 460 | |
|
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461 |
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462 void DatabaseWrapper::DeleteAttachment(int64_t id, |
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463 FileContentType attachment) |
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464 { |
| 701 | 465 SQLite::Statement s(db_, SQLITE_FROM_HERE, "DELETE FROM AttachedFiles WHERE id=? AND fileType=?"); |
|
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466 s.BindInt64(0, id); |
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467 s.BindInt(1, attachment); |
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468 s.Run(); |
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469 } |
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470 |
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471 |
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472 |
|
440
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473 void DatabaseWrapper::ListAvailableAttachments(std::list<FileContentType>& result, |
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474 int64_t id) |
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475 { |
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476 result.clear(); |
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477 |
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478 SQLite::Statement s(db_, SQLITE_FROM_HERE, |
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479 "SELECT fileType FROM AttachedFiles WHERE id=?"); |
| 585 | 480 s.BindInt64(0, id); |
|
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481 |
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482 while (s.Step()) |
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483 { |
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484 result.push_back(static_cast<FileContentType>(s.ColumnInt(0))); |
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485 } |
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486 } |
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487 |
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488 bool DatabaseWrapper::LookupAttachment(FileInfo& attachment, |
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489 int64_t id, |
| 233 | 490 FileContentType contentType) |
| 183 | 491 { |
| 492 SQLite::Statement s(db_, SQLITE_FROM_HERE, | |
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493 "SELECT uuid, uncompressedSize, compressionType, compressedSize, uncompressedMD5, compressedMD5 FROM AttachedFiles WHERE id=? AND fileType=?"); |
| 585 | 494 s.BindInt64(0, id); |
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495 s.BindInt(1, contentType); |
| 183 | 496 |
| 497 if (!s.Step()) | |
| 498 { | |
| 499 return false; | |
| 500 } | |
| 501 else | |
| 502 { | |
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503 attachment = FileInfo(s.ColumnString(0), |
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504 contentType, |
| 740 | 505 s.ColumnInt64(1), |
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506 s.ColumnString(4), |
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507 static_cast<CompressionType>(s.ColumnInt(2)), |
| 740 | 508 s.ColumnInt64(3), |
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509 s.ColumnString(5)); |
| 183 | 510 return true; |
| 511 } | |
| 512 } | |
| 513 | |
| 514 void DatabaseWrapper::SetMainDicomTags(int64_t id, | |
| 515 const DicomMap& tags) | |
| 516 { | |
| 517 DicomArray flattened(tags); | |
| 518 for (size_t i = 0; i < flattened.GetSize(); i++) | |
| 519 { | |
| 520 SQLite::Statement s(db_, SQLITE_FROM_HERE, "INSERT INTO MainDicomTags VALUES(?, ?, ?, ?)"); | |
| 585 | 521 s.BindInt64(0, id); |
| 183 | 522 s.BindInt(1, flattened.GetElement(i).GetTag().GetGroup()); |
| 523 s.BindInt(2, flattened.GetElement(i).GetTag().GetElement()); | |
| 524 s.BindString(3, flattened.GetElement(i).GetValue().AsString()); | |
| 525 s.Run(); | |
| 526 } | |
| 527 } | |
| 528 | |
| 529 void DatabaseWrapper::GetMainDicomTags(DicomMap& map, | |
| 530 int64_t id) | |
| 531 { | |
| 532 map.Clear(); | |
| 533 | |
| 534 SQLite::Statement s(db_, SQLITE_FROM_HERE, "SELECT * FROM MainDicomTags WHERE id=?"); | |
| 585 | 535 s.BindInt64(0, id); |
| 183 | 536 while (s.Step()) |
| 537 { | |
| 538 map.SetValue(s.ColumnInt(1), | |
| 539 s.ColumnInt(2), | |
| 540 s.ColumnString(3)); | |
| 541 } | |
| 542 } | |
| 543 | |
| 544 | |
| 545 bool DatabaseWrapper::GetParentPublicId(std::string& result, | |
| 546 int64_t id) | |
| 547 { | |
| 548 SQLite::Statement s(db_, SQLITE_FROM_HERE, "SELECT a.publicId FROM Resources AS a, Resources AS b " | |
| 549 "WHERE a.internalId = b.parentId AND b.internalId = ?"); | |
| 585 | 550 s.BindInt64(0, id); |
| 183 | 551 |
| 552 if (s.Step()) | |
| 553 { | |
| 554 result = s.ColumnString(0); | |
| 555 return true; | |
| 556 } | |
| 557 else | |
| 558 { | |
| 559 return false; | |
| 560 } | |
| 561 } | |
| 562 | |
| 563 | |
| 564 void DatabaseWrapper::GetChildrenPublicId(std::list<std::string>& result, | |
| 565 int64_t id) | |
| 566 { | |
| 567 SQLite::Statement s(db_, SQLITE_FROM_HERE, "SELECT a.publicId FROM Resources AS a, Resources AS b " | |
| 568 "WHERE a.parentId = b.internalId AND b.internalId = ?"); | |
| 585 | 569 s.BindInt64(0, id); |
| 183 | 570 |
| 571 result.clear(); | |
| 572 | |
| 573 while (s.Step()) | |
| 574 { | |
| 575 result.push_back(s.ColumnString(0)); | |
| 576 } | |
| 577 } | |
| 578 | |
| 579 | |
| 199 | 580 void DatabaseWrapper::GetChildrenInternalId(std::list<int64_t>& result, |
| 581 int64_t id) | |
| 582 { | |
| 583 SQLite::Statement s(db_, SQLITE_FROM_HERE, "SELECT a.internalId FROM Resources AS a, Resources AS b " | |
| 584 "WHERE a.parentId = b.internalId AND b.internalId = ?"); | |
| 585 | 585 s.BindInt64(0, id); |
| 199 | 586 |
| 587 result.clear(); | |
| 588 | |
| 589 while (s.Step()) | |
| 590 { | |
| 741 | 591 result.push_back(s.ColumnInt64(0)); |
| 199 | 592 } |
| 593 } | |
| 594 | |
| 595 | |
| 183 | 596 void DatabaseWrapper::LogChange(ChangeType changeType, |
|
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597 int64_t internalId, |
| 183 | 598 ResourceType resourceType, |
| 599 const boost::posix_time::ptime& date) | |
| 600 { | |
| 601 SQLite::Statement s(db_, SQLITE_FROM_HERE, "INSERT INTO Changes VALUES(NULL, ?, ?, ?, ?)"); | |
| 602 s.BindInt(0, changeType); | |
| 585 | 603 s.BindInt64(1, internalId); |
| 183 | 604 s.BindInt(2, resourceType); |
| 605 s.BindString(3, boost::posix_time::to_iso_string(date)); | |
| 606 s.Run(); | |
| 607 } | |
| 608 | |
| 609 | |
|
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610 void DatabaseWrapper::GetChangesInternal(Json::Value& target, |
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611 SQLite::Statement& s, |
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612 int64_t since, |
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613 unsigned int maxResults) |
| 204 | 614 { |
| 615 Json::Value changes = Json::arrayValue; | |
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616 int64_t last = since; |
| 204 | 617 |
| 618 while (changes.size() < maxResults && s.Step()) | |
| 619 { | |
| 742 | 620 int64_t seq = s.ColumnInt64(0); |
| 204 | 621 ChangeType changeType = static_cast<ChangeType>(s.ColumnInt(1)); |
| 742 | 622 int64_t internalId = s.ColumnInt64(2); |
| 204 | 623 ResourceType resourceType = static_cast<ResourceType>(s.ColumnInt(3)); |
| 624 const std::string& date = s.ColumnString(4); | |
|
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625 std::string publicId = GetPublicId(internalId); |
| 204 | 626 |
| 627 Json::Value item = Json::objectValue; | |
| 628 item["Seq"] = static_cast<int>(seq); | |
|
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629 item["ChangeType"] = EnumerationToString(changeType); |
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630 item["ResourceType"] = EnumerationToString(resourceType); |
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631 item["ID"] = publicId; |
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632 item["Path"] = GetBasePath(resourceType, publicId); |
| 204 | 633 item["Date"] = date; |
| 634 last = seq; | |
| 635 | |
| 636 changes.append(item); | |
| 637 } | |
| 638 | |
| 639 target = Json::objectValue; | |
| 640 target["Changes"] = changes; | |
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641 target["Done"] = !(changes.size() == maxResults && s.Step()); |
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642 target["Last"] = static_cast<int>(last); |
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643 } |
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644 |
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645 |
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646 void DatabaseWrapper::GetChanges(Json::Value& target, |
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647 int64_t since, |
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648 unsigned int maxResults) |
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649 { |
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650 SQLite::Statement s(db_, SQLITE_FROM_HERE, "SELECT * FROM Changes WHERE seq>? ORDER BY seq LIMIT ?"); |
| 585 | 651 s.BindInt64(0, since); |
|
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652 s.BindInt(1, maxResults + 1); |
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653 GetChangesInternal(target, s, since, maxResults); |
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654 } |
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655 |
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656 void DatabaseWrapper::GetLastChange(Json::Value& target) |
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657 { |
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658 SQLite::Statement s(db_, SQLITE_FROM_HERE, "SELECT * FROM Changes ORDER BY seq DESC LIMIT 1"); |
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659 GetChangesInternal(target, s, 0, 1); |
| 204 | 660 } |
| 661 | |
| 662 | |
| 231 | 663 void DatabaseWrapper::LogExportedResource(ResourceType resourceType, |
| 664 const std::string& publicId, | |
| 665 const std::string& remoteModality, | |
| 666 const std::string& patientId, | |
| 667 const std::string& studyInstanceUid, | |
| 668 const std::string& seriesInstanceUid, | |
| 669 const std::string& sopInstanceUid, | |
| 183 | 670 const boost::posix_time::ptime& date) |
| 671 { | |
| 231 | 672 SQLite::Statement s(db_, SQLITE_FROM_HERE, |
| 673 "INSERT INTO ExportedResources VALUES(NULL, ?, ?, ?, ?, ?, ?, ?, ?)"); | |
| 674 | |
| 675 s.BindInt(0, resourceType); | |
| 676 s.BindString(1, publicId); | |
| 677 s.BindString(2, remoteModality); | |
| 678 s.BindString(3, patientId); | |
| 679 s.BindString(4, studyInstanceUid); | |
| 680 s.BindString(5, seriesInstanceUid); | |
| 681 s.BindString(6, sopInstanceUid); | |
| 682 s.BindString(7, boost::posix_time::to_iso_string(date)); | |
| 683 | |
| 183 | 684 s.Run(); |
| 685 } | |
| 231 | 686 |
| 687 | |
| 742 | 688 void DatabaseWrapper::GetExportedResourcesInternal(Json::Value& target, |
| 689 SQLite::Statement& s, | |
| 690 int64_t since, | |
| 691 unsigned int maxResults) | |
| 231 | 692 { |
| 693 Json::Value changes = Json::arrayValue; | |
|
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694 int64_t last = since; |
| 231 | 695 |
| 696 while (changes.size() < maxResults && s.Step()) | |
| 697 { | |
| 743 | 698 int64_t seq = s.ColumnInt64(0); |
| 231 | 699 ResourceType resourceType = static_cast<ResourceType>(s.ColumnInt(1)); |
| 700 std::string publicId = s.ColumnString(2); | |
| 701 | |
| 702 Json::Value item = Json::objectValue; | |
| 703 item["Seq"] = static_cast<int>(seq); | |
|
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704 item["ResourceType"] = EnumerationToString(resourceType); |
| 231 | 705 item["ID"] = publicId; |
| 706 item["Path"] = GetBasePath(resourceType, publicId); | |
| 707 item["RemoteModality"] = s.ColumnString(3); | |
| 708 item["Date"] = s.ColumnString(8); | |
| 709 | |
| 710 // WARNING: Do not add "break" below and do not reorder the case items! | |
| 711 switch (resourceType) | |
| 712 { | |
| 713 case ResourceType_Instance: | |
| 714 item["SopInstanceUid"] = s.ColumnString(7); | |
| 715 | |
| 716 case ResourceType_Series: | |
| 717 item["SeriesInstanceUid"] = s.ColumnString(6); | |
| 718 | |
| 719 case ResourceType_Study: | |
| 720 item["StudyInstanceUid"] = s.ColumnString(5); | |
| 721 | |
| 722 case ResourceType_Patient: | |
| 723 item["PatientId"] = s.ColumnString(4); | |
| 724 break; | |
| 725 | |
| 726 default: | |
| 727 throw OrthancException(ErrorCode_InternalError); | |
| 728 } | |
| 729 | |
| 730 last = seq; | |
| 731 | |
| 732 changes.append(item); | |
| 733 } | |
| 734 | |
| 735 target = Json::objectValue; | |
|
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736 target["Exports"] = changes; |
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737 target["Done"] = !(changes.size() == maxResults && s.Step()); |
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738 target["Last"] = static_cast<int>(last); |
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739 } |
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740 |
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741 |
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742 void DatabaseWrapper::GetExportedResources(Json::Value& target, |
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743 int64_t since, |
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744 unsigned int maxResults) |
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745 { |
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746 SQLite::Statement s(db_, SQLITE_FROM_HERE, |
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747 "SELECT * FROM ExportedResources WHERE seq>? ORDER BY seq LIMIT ?"); |
| 585 | 748 s.BindInt64(0, since); |
|
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749 s.BindInt(1, maxResults + 1); |
| 742 | 750 GetExportedResourcesInternal(target, s, since, maxResults); |
|
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751 } |
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752 |
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753 |
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754 void DatabaseWrapper::GetLastExportedResource(Json::Value& target) |
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755 { |
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756 SQLite::Statement s(db_, SQLITE_FROM_HERE, |
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757 "SELECT * FROM ExportedResources ORDER BY seq DESC LIMIT 1"); |
| 742 | 758 GetExportedResourcesInternal(target, s, 0, 1); |
| 231 | 759 } |
| 760 | |
| 761 | |
| 183 | 762 |
| 763 | |
| 764 int64_t DatabaseWrapper::GetTableRecordCount(const std::string& table) | |
| 765 { | |
| 766 char buf[128]; | |
| 767 sprintf(buf, "SELECT COUNT(*) FROM %s", table.c_str()); | |
| 768 SQLite::Statement s(db_, buf); | |
| 769 | |
| 218 | 770 if (!s.Step()) |
| 771 { | |
| 772 throw OrthancException(ErrorCode_InternalError); | |
| 773 } | |
| 774 | |
| 183 | 775 int64_t c = s.ColumnInt(0); |
| 776 assert(!s.Step()); | |
| 777 | |
| 778 return c; | |
| 779 } | |
| 780 | |
| 781 | |
| 782 uint64_t DatabaseWrapper::GetTotalCompressedSize() | |
| 783 { | |
| 784 SQLite::Statement s(db_, SQLITE_FROM_HERE, "SELECT SUM(compressedSize) FROM AttachedFiles"); | |
| 785 s.Run(); | |
| 786 return static_cast<uint64_t>(s.ColumnInt64(0)); | |
| 787 } | |
| 788 | |
| 789 | |
| 790 uint64_t DatabaseWrapper::GetTotalUncompressedSize() | |
| 791 { | |
| 792 SQLite::Statement s(db_, SQLITE_FROM_HERE, "SELECT SUM(uncompressedSize) FROM AttachedFiles"); | |
| 793 s.Run(); | |
| 794 return static_cast<uint64_t>(s.ColumnInt64(0)); | |
| 795 } | |
| 796 | |
| 190 | 797 void DatabaseWrapper::GetAllPublicIds(Json::Value& target, |
| 798 ResourceType resourceType) | |
| 799 { | |
| 800 SQLite::Statement s(db_, SQLITE_FROM_HERE, "SELECT publicId FROM Resources WHERE resourceType=?"); | |
| 801 s.BindInt(0, resourceType); | |
| 802 | |
| 803 target = Json::arrayValue; | |
| 804 while (s.Step()) | |
| 805 { | |
| 806 target.append(s.ColumnString(0)); | |
| 807 } | |
| 808 } | |
| 809 | |
| 183 | 810 |
| 811 DatabaseWrapper::DatabaseWrapper(const std::string& path, | |
| 812 IServerIndexListener& listener) : | |
| 813 listener_(listener) | |
| 814 { | |
| 815 db_.Open(path); | |
| 816 Open(); | |
| 817 } | |
| 818 | |
| 819 DatabaseWrapper::DatabaseWrapper(IServerIndexListener& listener) : | |
| 820 listener_(listener) | |
| 821 { | |
| 822 db_.OpenInMemory(); | |
| 823 Open(); | |
| 824 } | |
| 825 | |
| 826 void DatabaseWrapper::Open() | |
| 827 { | |
| 374 | 828 // Performance tuning of SQLite with PRAGMAs |
| 829 // http://www.sqlite.org/pragma.html | |
| 830 db_.Execute("PRAGMA SYNCHRONOUS=NORMAL;"); | |
| 831 db_.Execute("PRAGMA JOURNAL_MODE=WAL;"); | |
| 832 db_.Execute("PRAGMA LOCKING_MODE=EXCLUSIVE;"); | |
| 833 db_.Execute("PRAGMA WAL_AUTOCHECKPOINT=1000;"); | |
| 834 //db_.Execute("PRAGMA TEMP_STORE=memory"); | |
| 835 | |
| 183 | 836 if (!db_.DoesTableExist("GlobalProperties")) |
| 837 { | |
| 838 LOG(INFO) << "Creating the database"; | |
| 839 std::string query; | |
|
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840 EmbeddedResources::GetFileResource(query, EmbeddedResources::PREPARE_DATABASE); |
| 183 | 841 db_.Execute(query); |
| 842 } | |
| 843 | |
| 567 | 844 // Check the version of the database |
| 252 | 845 std::string version = GetGlobalProperty(GlobalProperty_DatabaseSchemaVersion, "Unknown"); |
| 846 bool ok = false; | |
| 847 try | |
| 848 { | |
| 849 LOG(INFO) << "Version of the Orthanc database: " << version; | |
| 850 unsigned int v = boost::lexical_cast<unsigned int>(version); | |
| 851 | |
|
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852 /** |
|
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853 * History of the database versions: |
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854 * - Version 3: from Orthanc 0.3.2 to Orthanc 0.7.2 (inclusive) |
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855 * - Version 4: from Orthanc 0.7.3 (inclusive) |
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856 **/ |
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857 |
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858 // This version of Orthanc is only compatible with versions 3 of 4 of the DB schema |
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859 ok = (v == 3 || v == 4); |
|
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860 |
|
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861 if (v == 3) |
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862 { |
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863 LOG(WARNING) << "Upgrading database version from 3 to 4"; |
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864 std::string upgrade; |
|
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865 EmbeddedResources::GetFileResource(upgrade, EmbeddedResources::UPGRADE_DATABASE_3_TO_4); |
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866 db_.BeginTransaction(); |
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867 db_.Execute(upgrade); |
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868 db_.CommitTransaction(); |
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869 } |
| 252 | 870 } |
| 871 catch (boost::bad_lexical_cast&) | |
| 872 { | |
| 873 } | |
| 874 | |
| 875 if (!ok) | |
| 876 { | |
|
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877 LOG(ERROR) << "Incompatible version of the Orthanc database: " << version; |
| 252 | 878 throw OrthancException(ErrorCode_IncompatibleDatabaseVersion); |
| 879 } | |
| 880 | |
| 183 | 881 signalRemainingAncestor_ = new Internals::SignalRemainingAncestor; |
| 882 db_.Register(signalRemainingAncestor_); | |
| 883 db_.Register(new Internals::SignalFileDeleted(listener_)); | |
| 884 } | |
| 238 | 885 |
| 886 uint64_t DatabaseWrapper::GetResourceCount(ResourceType resourceType) | |
| 887 { | |
| 888 SQLite::Statement s(db_, SQLITE_FROM_HERE, | |
| 889 "SELECT COUNT(*) FROM Resources WHERE resourceType=?"); | |
| 890 s.BindInt(0, resourceType); | |
| 891 | |
| 892 if (!s.Step()) | |
| 893 { | |
| 894 throw OrthancException(ErrorCode_InternalError); | |
| 895 } | |
| 896 | |
| 897 int64_t c = s.ColumnInt(0); | |
| 898 assert(!s.Step()); | |
| 899 | |
| 900 return c; | |
| 901 } | |
|
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902 |
|
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903 bool DatabaseWrapper::SelectPatientToRecycle(int64_t& internalId) |
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904 { |
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905 SQLite::Statement s(db_, SQLITE_FROM_HERE, |
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906 "SELECT patientId FROM PatientRecyclingOrder ORDER BY seq ASC LIMIT 1"); |
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907 |
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908 if (!s.Step()) |
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909 { |
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910 // No patient remaining or all the patients are protected |
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911 return false; |
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|
912 } |
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913 else |
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|
914 { |
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915 internalId = s.ColumnInt(0); |
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916 return true; |
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|
917 } |
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|
918 } |
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|
919 |
|
268
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920 bool DatabaseWrapper::SelectPatientToRecycle(int64_t& internalId, |
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|
921 int64_t patientIdToAvoid) |
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|
922 { |
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|
923 SQLite::Statement s(db_, SQLITE_FROM_HERE, |
|
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|
924 "SELECT patientId FROM PatientRecyclingOrder " |
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|
925 "WHERE patientId != ? ORDER BY seq ASC LIMIT 1"); |
| 585 | 926 s.BindInt64(0, patientIdToAvoid); |
|
268
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|
927 |
|
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|
928 if (!s.Step()) |
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|
929 { |
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930 // No patient remaining or all the patients are protected |
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931 return false; |
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932 } |
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933 else |
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|
934 { |
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|
935 internalId = s.ColumnInt(0); |
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936 return true; |
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|
937 } |
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|
938 } |
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|
939 |
|
262
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940 bool DatabaseWrapper::IsProtectedPatient(int64_t internalId) |
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941 { |
|
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942 SQLite::Statement s(db_, SQLITE_FROM_HERE, |
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943 "SELECT * FROM PatientRecyclingOrder WHERE patientId = ?"); |
| 585 | 944 s.BindInt64(0, internalId); |
|
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945 return !s.Step(); |
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946 } |
|
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947 |
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948 void DatabaseWrapper::SetProtectedPatient(int64_t internalId, |
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949 bool isProtected) |
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950 { |
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951 if (isProtected) |
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952 { |
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953 SQLite::Statement s(db_, SQLITE_FROM_HERE, "DELETE FROM PatientRecyclingOrder WHERE patientId=?"); |
| 585 | 954 s.BindInt64(0, internalId); |
|
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955 s.Run(); |
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956 } |
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957 else if (IsProtectedPatient(internalId)) |
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958 { |
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959 SQLite::Statement s(db_, SQLITE_FROM_HERE, "INSERT INTO PatientRecyclingOrder VALUES(NULL, ?)"); |
| 585 | 960 s.BindInt64(0, internalId); |
|
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961 s.Run(); |
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962 } |
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|
963 else |
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964 { |
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965 // Nothing to do: The patient is already unprotected |
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966 } |
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967 } |
| 310 | 968 |
| 969 | |
| 970 uint64_t DatabaseWrapper::IncrementGlobalSequence(GlobalProperty property) | |
| 971 { | |
| 972 std::string oldValue; | |
| 973 | |
| 974 if (LookupGlobalProperty(oldValue, property)) | |
| 975 { | |
| 976 uint64_t oldNumber; | |
| 977 | |
| 978 try | |
| 979 { | |
| 980 oldNumber = boost::lexical_cast<uint64_t>(oldValue); | |
| 981 SetGlobalProperty(property, boost::lexical_cast<std::string>(oldNumber + 1)); | |
| 982 return oldNumber + 1; | |
| 983 } | |
| 984 catch (boost::bad_lexical_cast&) | |
| 985 { | |
| 986 throw OrthancException(ErrorCode_InternalError); | |
| 987 } | |
| 988 } | |
| 989 else | |
| 990 { | |
| 991 // Initialize the sequence at "1" | |
| 992 SetGlobalProperty(property, "1"); | |
| 993 return 1; | |
| 994 } | |
| 995 } | |
|
413
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|
996 |
|
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|
997 |
|
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|
998 void DatabaseWrapper::ClearTable(const std::string& tableName) |
|
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|
999 { |
|
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|
1000 db_.Execute("DELETE FROM " + tableName); |
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|
1001 } |
| 513 | 1002 |
| 1003 | |
| 1004 bool DatabaseWrapper::IsExistingResource(int64_t internalId) | |
| 1005 { | |
| 1006 SQLite::Statement s(db_, SQLITE_FROM_HERE, | |
| 1007 "SELECT * FROM Resources WHERE internalId=?"); | |
| 585 | 1008 s.BindInt64(0, internalId); |
| 513 | 1009 return s.Step(); |
| 1010 } | |
| 521 | 1011 |
| 1012 | |
| 1013 void DatabaseWrapper::LookupTagValue(std::list<int64_t>& result, | |
| 1014 DicomTag tag, | |
| 1015 const std::string& value) | |
| 1016 { | |
| 1017 SQLite::Statement s(db_, SQLITE_FROM_HERE, | |
| 1018 "SELECT id FROM MainDicomTags WHERE tagGroup=? AND tagElement=? and value=?"); | |
| 1019 | |
| 1020 s.BindInt(0, tag.GetGroup()); | |
| 1021 s.BindInt(1, tag.GetElement()); | |
| 1022 s.BindString(2, value); | |
| 1023 | |
| 1024 result.clear(); | |
| 1025 | |
| 1026 while (s.Step()) | |
| 1027 { | |
| 1028 result.push_back(s.ColumnInt64(0)); | |
| 1029 } | |
| 1030 } | |
| 1031 | |
| 1032 | |
| 1033 void DatabaseWrapper::LookupTagValue(std::list<int64_t>& result, | |
| 1034 const std::string& value) | |
| 1035 { | |
| 1036 SQLite::Statement s(db_, SQLITE_FROM_HERE, | |
| 1037 "SELECT id FROM MainDicomTags WHERE value=?"); | |
| 1038 | |
| 1039 s.BindString(0, value); | |
| 1040 | |
| 1041 result.clear(); | |
| 1042 | |
| 1043 while (s.Step()) | |
| 1044 { | |
| 1045 result.push_back(s.ColumnInt64(0)); | |
| 1046 } | |
| 1047 } | |
|
1006
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parents:
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1048 |
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parents:
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1049 |
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parents:
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1050 void DatabaseWrapper::GetAllMetadata(std::map<MetadataType, std::string>& result, |
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parents:
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1051 int64_t id) |
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parents:
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1052 { |
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parents:
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1053 result.clear(); |
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proper handling of metadata in Store
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parents:
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1054 |
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parents:
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1055 SQLite::Statement s(db_, SQLITE_FROM_HERE, "SELECT type, value FROM Metadata WHERE id=?"); |
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649d47854314
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parents:
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1056 s.BindInt64(0, id); |
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649d47854314
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parents:
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1057 |
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parents:
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1058 while (s.Step()) |
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parents:
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1059 { |
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649d47854314
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parents:
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1060 MetadataType key = static_cast<MetadataType>(s.ColumnInt(0)); |
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parents:
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1061 result[key] = s.ColumnString(1); |
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649d47854314
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parents:
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1062 } |
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649d47854314
proper handling of metadata in Store
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parents:
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1063 } |
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parents:
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1064 |
| 183 | 1065 } |