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annotate OrthancServer/Sources/ServerContext.cpp @ 4805:0a38000b086d

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Archive jobs response now contains a header Content-Disposition:filename='archive.zip'
author Alain Mazy <am@osimis.io>
date Tue, 09 Nov 2021 09:51:14 +0100
parents 51ec061516c9
children 434843934307 94616af363ec
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1 /**
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2 * Orthanc - A Lightweight, RESTful DICOM Store
1900
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3 * Copyright (C) 2012-2016 Sebastien Jodogne, Medical Physics
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4 * Department, University Hospital of Liege, Belgium
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5 * Copyright (C) 2017-2021 Osimis S.A., Belgium
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6 *
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7 * This program is free software: you can redistribute it and/or
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8 * modify it under the terms of the GNU General Public License as
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9 * published by the Free Software Foundation, either version 3 of the
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10 * License, or (at your option) any later version.
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11 *
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12 * In addition, as a special exception, the copyright holders of this
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13 * program give permission to link the code of its release with the
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14 * OpenSSL project's "OpenSSL" library (or with modified versions of it
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15 * that use the same license as the "OpenSSL" library), and distribute
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16 * the linked executables. You must obey the GNU General Public License
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17 * in all respects for all of the code used other than "OpenSSL". If you
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18 * modify file(s) with this exception, you may extend this exception to
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19 * your version of the file(s), but you are not obligated to do so. If
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20 * you do not wish to do so, delete this exception statement from your
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21 * version. If you delete this exception statement from all source files
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22 * in the program, then also delete it here.
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23 *
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24 * This program is distributed in the hope that it will be useful, but
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25 * WITHOUT ANY WARRANTY; without even the implied warranty of
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26 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
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27 * General Public License for more details.
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28 *
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29 * You should have received a copy of the GNU General Public License
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30 * along with this program. If not, see <http://www.gnu.org/licenses/>.
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31 **/
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32
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33
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34 #include "PrecompiledHeadersServer.h"
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35 #include "ServerContext.h"
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36
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37 #include "../../OrthancFramework/Sources/Cache/SharedArchive.h"
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38 #include "../../OrthancFramework/Sources/DicomFormat/DicomElement.h"
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39 #include "../../OrthancFramework/Sources/DicomFormat/DicomStreamReader.h"
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40 #include "../../OrthancFramework/Sources/DicomParsing/DcmtkTranscoder.h"
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41 #include "../../OrthancFramework/Sources/DicomParsing/DicomModification.h"
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42 #include "../../OrthancFramework/Sources/DicomParsing/FromDcmtkBridge.h"
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43 #include "../../OrthancFramework/Sources/DicomParsing/Internals/DicomImageDecoder.h"
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44 #include "../../OrthancFramework/Sources/FileStorage/StorageAccessor.h"
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45 #include "../../OrthancFramework/Sources/HttpServer/FilesystemHttpSender.h"
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46 #include "../../OrthancFramework/Sources/HttpServer/HttpStreamTranscoder.h"
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47 #include "../../OrthancFramework/Sources/JobsEngine/SetOfInstancesJob.h"
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48 #include "../../OrthancFramework/Sources/Logging.h"
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49 #include "../../OrthancFramework/Sources/MetricsRegistry.h"
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50 #include "../Plugins/Engine/OrthancPlugins.h"
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51
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52 #include "OrthancConfiguration.h"
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53 #include "OrthancRestApi/OrthancRestApi.h"
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54 #include "Search/DatabaseLookup.h"
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55 #include "ServerJobs/OrthancJobUnserializer.h"
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56 #include "ServerToolbox.h"
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57 #include "StorageCommitmentReports.h"
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58
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59 #include <dcmtk/dcmdata/dcfilefo.h>
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62 static size_t DICOM_CACHE_SIZE = 128 * 1024 * 1024; // 128 MB
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64
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65 /**
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66 * IMPORTANT: We make the assumption that the same instance of
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67 * FileStorage can be accessed from multiple threads. This seems OK
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68 * since the filesystem implements the required locking mechanisms,
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69 * but maybe a read-writer lock on the "FileStorage" could be
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70 * useful. Conversely, "ServerIndex" already implements mutex-based
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71 * locking.
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72 **/
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73
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74 namespace Orthanc
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75 {
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76 static bool IsUncompressedTransferSyntax(DicomTransferSyntax transferSyntax)
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77 {
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78 return (transferSyntax == DicomTransferSyntax_LittleEndianImplicit ||
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79 transferSyntax == DicomTransferSyntax_LittleEndianExplicit ||
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80 transferSyntax == DicomTransferSyntax_BigEndianExplicit);
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81 }
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82
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83
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84 static bool IsTranscodableTransferSyntax(DicomTransferSyntax transferSyntax)
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85 {
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86 return (
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87 // Do not try to transcode DICOM videos (new in Orthanc 1.8.2)
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88 transferSyntax != DicomTransferSyntax_MPEG2MainProfileAtMainLevel &&
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89 transferSyntax != DicomTransferSyntax_MPEG2MainProfileAtHighLevel &&
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90 transferSyntax != DicomTransferSyntax_MPEG4HighProfileLevel4_1 &&
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91 transferSyntax != DicomTransferSyntax_MPEG4BDcompatibleHighProfileLevel4_1 &&
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92 transferSyntax != DicomTransferSyntax_MPEG4HighProfileLevel4_2_For2DVideo &&
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93 transferSyntax != DicomTransferSyntax_MPEG4HighProfileLevel4_2_For3DVideo &&
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94 transferSyntax != DicomTransferSyntax_MPEG4StereoHighProfileLevel4_2 &&
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95 transferSyntax != DicomTransferSyntax_HEVCMainProfileLevel5_1 &&
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96 transferSyntax != DicomTransferSyntax_HEVCMain10ProfileLevel5_1 &&
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97
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98 // Do not try to transcode special transfer syntaxes
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99 transferSyntax != DicomTransferSyntax_RFC2557MimeEncapsulation &&
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100 transferSyntax != DicomTransferSyntax_XML);
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101 }
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102
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103
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104 void ServerContext::ChangeThread(ServerContext* that,
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105 unsigned int sleepDelay)
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106 {
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107 while (!that->done_)
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108 {
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109 std::unique_ptr<IDynamicObject> obj(that->pendingChanges_.Dequeue(sleepDelay));
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110
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111 if (obj.get() != NULL)
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112 {
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113 const ServerIndexChange& change = dynamic_cast<const ServerIndexChange&>(*obj.get());
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114
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115 boost::shared_lock<boost::shared_mutex> lock(that->listenersMutex_);
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116 for (ServerListeners::iterator it = that->listeners_.begin();
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117 it != that->listeners_.end(); ++it)
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118 {
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119 try
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120 {
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121 try
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diff changeset
122 {
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diff changeset
123 it->GetListener().SignalChange(change);
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124 }
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diff changeset
125 catch (std::bad_alloc&)
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diff changeset
126 {
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diff changeset
127 LOG(ERROR) << "Not enough memory while signaling a change";
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diff changeset
128 }
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diff changeset
129 catch (...)
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diff changeset
130 {
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131 throw OrthancException(ErrorCode_InternalError);
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132 }
1436
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133 }
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diff changeset
134 catch (OrthancException& e)
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135 {
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diff changeset
136 LOG(ERROR) << "Error in the " << it->GetDescription()
2135
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137 << " callback while signaling a change: " << e.What()
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diff changeset
138 << " (code " << e.GetErrorCode() << ")";
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139 }
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diff changeset
140 }
0a3e3be59094 uncoupling of SignalChange for Lua scripts
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diff changeset
141 }
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parents: 1434
diff changeset
142 }
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parents: 1434
diff changeset
143 }
0a3e3be59094 uncoupling of SignalChange for Lua scripts
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diff changeset
144
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145
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146 void ServerContext::SaveJobsThread(ServerContext* that,
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147 unsigned int sleepDelay)
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148 {
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diff changeset
149 static const boost::posix_time::time_duration PERIODICITY =
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150 boost::posix_time::seconds(10);
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151
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152 boost::posix_time::ptime next =
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153 boost::posix_time::microsec_clock::universal_time() + PERIODICITY;
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154
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155 while (!that->done_)
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156 {
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157 boost::this_thread::sleep(boost::posix_time::milliseconds(sleepDelay));
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158
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159 if (that->haveJobsChanged_ ||
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diff changeset
160 boost::posix_time::microsec_clock::universal_time() >= next)
2672
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161 {
2673
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162 that->haveJobsChanged_ = false;
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163 that->SaveJobsEngine();
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164 next = boost::posix_time::microsec_clock::universal_time() + PERIODICITY;
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165 }
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166 }
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167 }
2673
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diff changeset
168
8e0bc055d18c JobsRegistry::IObserver
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169
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diff changeset
170 void ServerContext::SignalJobSubmitted(const std::string& jobId)
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171 {
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172 haveJobsChanged_ = true;
2738
3a55b77339ff fix deadlock in Lua scripts
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diff changeset
173 mainLua_.SignalJobSubmitted(jobId);
4129
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174
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175 #if ORTHANC_ENABLE_PLUGINS == 1
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176 if (HasPlugins())
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177 {
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178 GetPlugins().SignalJobSubmitted(jobId);
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179 }
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diff changeset
180 #endif
2673
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diff changeset
181 }
8e0bc055d18c JobsRegistry::IObserver
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diff changeset
182
8e0bc055d18c JobsRegistry::IObserver
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diff changeset
183
8e0bc055d18c JobsRegistry::IObserver
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diff changeset
184 void ServerContext::SignalJobSuccess(const std::string& jobId)
8e0bc055d18c JobsRegistry::IObserver
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diff changeset
185 {
8e0bc055d18c JobsRegistry::IObserver
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diff changeset
186 haveJobsChanged_ = true;
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diff changeset
187 mainLua_.SignalJobSuccess(jobId);
4129
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188
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diff changeset
189 #if ORTHANC_ENABLE_PLUGINS == 1
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diff changeset
190 if (HasPlugins())
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diff changeset
191 {
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diff changeset
192 GetPlugins().SignalJobSuccess(jobId);
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diff changeset
193 }
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diff changeset
194 #endif
2673
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195 }
2672
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diff changeset
196
3efc44fac209 periodically saving jobs
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diff changeset
197
2673
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diff changeset
198 void ServerContext::SignalJobFailure(const std::string& jobId)
8e0bc055d18c JobsRegistry::IObserver
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diff changeset
199 {
8e0bc055d18c JobsRegistry::IObserver
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diff changeset
200 haveJobsChanged_ = true;
2738
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diff changeset
201 mainLua_.SignalJobFailure(jobId);
4129
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diff changeset
202
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diff changeset
203 #if ORTHANC_ENABLE_PLUGINS == 1
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diff changeset
204 if (HasPlugins())
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diff changeset
205 {
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diff changeset
206 GetPlugins().SignalJobFailure(jobId);
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diff changeset
207 }
Sebastien Jodogne <s.jodogne@gmail.com>
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diff changeset
208 #endif
2673
8e0bc055d18c JobsRegistry::IObserver
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diff changeset
209 }
8e0bc055d18c JobsRegistry::IObserver
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diff changeset
210
8e0bc055d18c JobsRegistry::IObserver
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parents: 2672
diff changeset
211
2671
06c0a6b8a871 new command-line argument: --no-jobs
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diff changeset
212 void ServerContext::SetupJobsEngine(bool unitTesting,
06c0a6b8a871 new command-line argument: --no-jobs
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diff changeset
213 bool loadJobsFromDatabase)
2668
d26dd081df97 saving jobs engine on exit
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diff changeset
214 {
2671
06c0a6b8a871 new command-line argument: --no-jobs
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diff changeset
215 if (loadJobsFromDatabase)
2668
d26dd081df97 saving jobs engine on exit
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diff changeset
216 {
2671
06c0a6b8a871 new command-line argument: --no-jobs
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diff changeset
217 std::string serialized;
4607
f75c63aa9de0 differentiating between shared and private global properties
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parents: 4519
diff changeset
218 if (index_.LookupGlobalProperty(serialized, GlobalProperty_JobsRegistry, false /* not shared */))
2671
06c0a6b8a871 new command-line argument: --no-jobs
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diff changeset
219 {
06c0a6b8a871 new command-line argument: --no-jobs
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diff changeset
220 LOG(WARNING) << "Reloading the jobs from the last execution of Orthanc";
2668
d26dd081df97 saving jobs engine on exit
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diff changeset
221
2671
06c0a6b8a871 new command-line argument: --no-jobs
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2668
diff changeset
222 try
06c0a6b8a871 new command-line argument: --no-jobs
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parents: 2668
diff changeset
223 {
4205
d962a2996637 cppcheck
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4203
diff changeset
224 OrthancJobUnserializer unserializer(*this);
2815
925d8dc03a23 unserialization of jobs from plugins
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parents: 2808
diff changeset
225 jobsEngine_.LoadRegistryFromString(unserializer, serialized);
2671
06c0a6b8a871 new command-line argument: --no-jobs
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parents: 2668
diff changeset
226 }
06c0a6b8a871 new command-line argument: --no-jobs
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parents: 2668
diff changeset
227 catch (OrthancException& e)
06c0a6b8a871 new command-line argument: --no-jobs
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parents: 2668
diff changeset
228 {
2925
a80ba85d89e6 Orthanc starts even if jobs from a previous execution cannot be unserialized
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diff changeset
229 LOG(WARNING) << "Cannot unserialize the jobs engine, starting anyway: " << e.What();
2671
06c0a6b8a871 new command-line argument: --no-jobs
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diff changeset
230 }
2668
d26dd081df97 saving jobs engine on exit
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diff changeset
231 }
2671
06c0a6b8a871 new command-line argument: --no-jobs
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2668
diff changeset
232 else
2668
d26dd081df97 saving jobs engine on exit
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2665
diff changeset
233 {
2671
06c0a6b8a871 new command-line argument: --no-jobs
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2668
diff changeset
234 LOG(INFO) << "The last execution of Orthanc has archived no job";
2668
d26dd081df97 saving jobs engine on exit
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diff changeset
235 }
d26dd081df97 saving jobs engine on exit
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2665
diff changeset
236 }
d26dd081df97 saving jobs engine on exit
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2665
diff changeset
237 else
d26dd081df97 saving jobs engine on exit
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parents: 2665
diff changeset
238 {
2925
a80ba85d89e6 Orthanc starts even if jobs from a previous execution cannot be unserialized
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2898
diff changeset
239 LOG(INFO) << "Not reloading the jobs from the last execution of Orthanc";
2668
d26dd081df97 saving jobs engine on exit
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2665
diff changeset
240 }
d26dd081df97 saving jobs engine on exit
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2665
diff changeset
241
4024
1d2b31fc782f new 'changes': JobSubmitted, JobSuccess, JobFailure
Alain Mazy <alain@mazy.be>
parents: 4022
diff changeset
242 jobsEngine_.GetRegistry().SetObserver(*this);
2668
d26dd081df97 saving jobs engine on exit
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2665
diff changeset
243 jobsEngine_.Start();
2815
925d8dc03a23 unserialization of jobs from plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2808
diff changeset
244 isJobsEngineUnserialized_ = true;
925d8dc03a23 unserialization of jobs from plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2808
diff changeset
245
925d8dc03a23 unserialization of jobs from plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2808
diff changeset
246 saveJobsThread_ = boost::thread(SaveJobsThread, this, (unitTesting ? 20 : 100));
2668
d26dd081df97 saving jobs engine on exit
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2665
diff changeset
247 }
d26dd081df97 saving jobs engine on exit
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2665
diff changeset
248
d26dd081df97 saving jobs engine on exit
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2665
diff changeset
249
d26dd081df97 saving jobs engine on exit
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2665
diff changeset
250 void ServerContext::SaveJobsEngine()
d26dd081df97 saving jobs engine on exit
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2665
diff changeset
251 {
3165
1fe524e211af New configuration option: "SaveJobs" to specify whether jobs are stored in the database
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3097
diff changeset
252 if (saveJobs_)
1fe524e211af New configuration option: "SaveJobs" to specify whether jobs are stored in the database
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3097
diff changeset
253 {
4268
0ae2ca210077 new macro TLOG() to replace VLOG() for trace logs with a category
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4265
diff changeset
254 LOG(TRACE) << "Serializing the content of the jobs engine";
2668
d26dd081df97 saving jobs engine on exit
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2665
diff changeset
255
3165
1fe524e211af New configuration option: "SaveJobs" to specify whether jobs are stored in the database
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3097
diff changeset
256 try
1fe524e211af New configuration option: "SaveJobs" to specify whether jobs are stored in the database
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3097
diff changeset
257 {
1fe524e211af New configuration option: "SaveJobs" to specify whether jobs are stored in the database
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3097
diff changeset
258 Json::Value value;
1fe524e211af New configuration option: "SaveJobs" to specify whether jobs are stored in the database
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3097
diff changeset
259 jobsEngine_.GetRegistry().Serialize(value);
2668
d26dd081df97 saving jobs engine on exit
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2665
diff changeset
260
4392
3af1d763763a confining Json::Reader and Json::*Writer into Toolbox
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4384
diff changeset
261 std::string serialized;
4394
f7104e9d044c functions to read/write JSON in OrthancPluginCppWrapper.h
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4392
diff changeset
262 Toolbox::WriteFastJson(serialized, value);
2668
d26dd081df97 saving jobs engine on exit
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2665
diff changeset
263
4607
f75c63aa9de0 differentiating between shared and private global properties
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4519
diff changeset
264 index_.SetGlobalProperty(GlobalProperty_JobsRegistry, false /* not shared */, serialized);
3165
1fe524e211af New configuration option: "SaveJobs" to specify whether jobs are stored in the database
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3097
diff changeset
265 }
1fe524e211af New configuration option: "SaveJobs" to specify whether jobs are stored in the database
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3097
diff changeset
266 catch (OrthancException& e)
1fe524e211af New configuration option: "SaveJobs" to specify whether jobs are stored in the database
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3097
diff changeset
267 {
1fe524e211af New configuration option: "SaveJobs" to specify whether jobs are stored in the database
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3097
diff changeset
268 LOG(ERROR) << "Cannot serialize the jobs engine: " << e.What();
1fe524e211af New configuration option: "SaveJobs" to specify whether jobs are stored in the database
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3097
diff changeset
269 }
2668
d26dd081df97 saving jobs engine on exit
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2665
diff changeset
270 }
d26dd081df97 saving jobs engine on exit
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2665
diff changeset
271 }
d26dd081df97 saving jobs engine on exit
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2665
diff changeset
272
d26dd081df97 saving jobs engine on exit
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2665
diff changeset
273
4457
789676a8c96a Refactoring and improvements to the cache of DICOM files in ServerContext
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4437
diff changeset
274 void ServerContext::PublishDicomCacheMetrics()
789676a8c96a Refactoring and improvements to the cache of DICOM files in ServerContext
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4437
diff changeset
275 {
789676a8c96a Refactoring and improvements to the cache of DICOM files in ServerContext
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4437
diff changeset
276 metricsRegistry_->SetValue("orthanc_dicom_cache_size",
789676a8c96a Refactoring and improvements to the cache of DICOM files in ServerContext
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4437
diff changeset
277 static_cast<float>(dicomCache_.GetCurrentSize()) / static_cast<float>(1024 * 1024));
789676a8c96a Refactoring and improvements to the cache of DICOM files in ServerContext
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4437
diff changeset
278 metricsRegistry_->SetValue("orthanc_dicom_cache_count",
789676a8c96a Refactoring and improvements to the cache of DICOM files in ServerContext
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4437
diff changeset
279 static_cast<float>(dicomCache_.GetNumberOfItems()));
789676a8c96a Refactoring and improvements to the cache of DICOM files in ServerContext
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4437
diff changeset
280 }
789676a8c96a Refactoring and improvements to the cache of DICOM files in ServerContext
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4437
diff changeset
281
789676a8c96a Refactoring and improvements to the cache of DICOM files in ServerContext
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4437
diff changeset
282
1549
e5e975e9b738 refactoring and simplification of StorageAccessor
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1548
diff changeset
283 ServerContext::ServerContext(IDatabaseWrapper& database,
2665
389d050a2e66 fix deadlock, speed up unit tests
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2626
diff changeset
284 IStorageArea& area,
2950
dc18d5804746 support of JobsHistorySize set to zero
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2940
diff changeset
285 bool unitTesting,
dc18d5804746 support of JobsHistorySize set to zero
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2940
diff changeset
286 size_t maxCompletedJobs) :
2665
389d050a2e66 fix deadlock, speed up unit tests
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2626
diff changeset
287 index_(*this, database, (unitTesting ? 20 : 500)),
1549
e5e975e9b738 refactoring and simplification of StorageAccessor
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1548
diff changeset
288 area_(area),
656
08eca5d86aad fixes to cppcheck
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 409
diff changeset
289 compressionEnabled_(false),
1549
e5e975e9b738 refactoring and simplification of StorageAccessor
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1548
diff changeset
290 storeMD5_(true),
4457
789676a8c96a Refactoring and improvements to the cache of DICOM files in ServerContext
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4437
diff changeset
291 largeDicomThrottler_(1),
789676a8c96a Refactoring and improvements to the cache of DICOM files in ServerContext
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4437
diff changeset
292 dicomCache_(DICOM_CACHE_SIZE),
2738
3a55b77339ff fix deadlock in Lua scripts
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2716
diff changeset
293 mainLua_(*this),
3a55b77339ff fix deadlock in Lua scripts
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2716
diff changeset
294 filterLua_(*this),
3a55b77339ff fix deadlock in Lua scripts
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2716
diff changeset
295 luaListener_(*this),
2950
dc18d5804746 support of JobsHistorySize set to zero
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2940
diff changeset
296 jobsEngine_(maxCompletedJobs),
2136
dd609a99d39a uniformization of the macro naming
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2135
diff changeset
297 #if ORTHANC_ENABLE_PLUGINS == 1
1232
f1c01451a8ee Introspection of plugins, Plugins can extend Orthanc Explorer with custom JavaScript
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1198
diff changeset
298 plugins_(NULL),
1632
eb8fbcf008b5 fix build with plugins disabled
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1582
diff changeset
299 #endif
1436
0a3e3be59094 uncoupling of SignalChange for Lua scripts
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1434
diff changeset
300 done_(false),
2673
8e0bc055d18c JobsRegistry::IObserver
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2672
diff changeset
301 haveJobsChanged_(false),
3174
8ea7c4546c3a primitives to collect metrics in Orthanc
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3165
diff changeset
302 isJobsEngineUnserialized_(false),
3533
2090ec6a83a5 create a default user if none is provided, while issuing a warning in Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3346
diff changeset
303 metricsRegistry_(new MetricsRegistry),
3535
41365091a41e display a security warning in the logs at startup when ExecuteLuaEnabled is true
Alain Mazy <alain@mazy.be>
parents: 3534
diff changeset
304 isHttpServerSecure_(true),
3813
aaaa442bfe39 moving SetOverwriteInstances from ServerIndex to ServerContext
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3736
diff changeset
305 isExecuteLuaEnabled_(false),
3894
8f7ad4989fec transcoding to uncompressed transfer syntaxes over DICOM protocol is implemented
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3839
diff changeset
306 overwriteInstances_(false),
3939
c205f670098e new configuration options: BuiltinDecoderTranscoderOrder and IngestTranscoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3938
diff changeset
307 dcmtkTranscoder_(new DcmtkTranscoder),
4375
208029732d51 New config option "DeidentifyDimseQueryLogs"
Mark Poscablo <Mark.Poscablo@varian.com>
parents: 4274
diff changeset
308 isIngestTranscoding_(false),
4384
7e0d015ad109 new configuration options IngestTranscodingOfUncompressed and IngestTranscodingOfCompressed
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4376
diff changeset
309 ingestTranscodingOfUncompressed_(true),
7e0d015ad109 new configuration options IngestTranscodingOfUncompressed and IngestTranscodingOfCompressed
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4376
diff changeset
310 ingestTranscodingOfCompressed_(true),
4465
fe774d8e904b New configuration option: "DicomScuPreferredTransferSyntax" to control transcoding in C-STORE SCU
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4460
diff changeset
311 preferredTransferSyntax_(DicomTransferSyntax_LittleEndianExplicit),
4376
b002f9abe802 review of changeset 4375:208029732d51
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4375
diff changeset
312 deidentifyLogs_(false)
224
4eb0c7ce86c9 refactoring for store
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
313 {
3939
c205f670098e new configuration options: BuiltinDecoderTranscoderOrder and IngestTranscoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3938
diff changeset
314 try
2940
4767d36679ed refactoring access to Orthanc configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2925
diff changeset
315 {
3939
c205f670098e new configuration options: BuiltinDecoderTranscoderOrder and IngestTranscoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3938
diff changeset
316 unsigned int lossyQuality;
c205f670098e new configuration options: BuiltinDecoderTranscoderOrder and IngestTranscoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3938
diff changeset
317
c205f670098e new configuration options: BuiltinDecoderTranscoderOrder and IngestTranscoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3938
diff changeset
318 {
c205f670098e new configuration options: BuiltinDecoderTranscoderOrder and IngestTranscoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3938
diff changeset
319 OrthancConfiguration::ReaderLock lock;
2965
9c0b0a6d8b54 MediaArchiveSize configuration option
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2956
diff changeset
320
3939
c205f670098e new configuration options: BuiltinDecoderTranscoderOrder and IngestTranscoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3938
diff changeset
321 queryRetrieveArchive_.reset(
c205f670098e new configuration options: BuiltinDecoderTranscoderOrder and IngestTranscoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3938
diff changeset
322 new SharedArchive(lock.GetConfiguration().GetUnsignedIntegerParameter("QueryRetrieveSize", 100)));
c205f670098e new configuration options: BuiltinDecoderTranscoderOrder and IngestTranscoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3938
diff changeset
323 mediaArchive_.reset(
c205f670098e new configuration options: BuiltinDecoderTranscoderOrder and IngestTranscoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3938
diff changeset
324 new SharedArchive(lock.GetConfiguration().GetUnsignedIntegerParameter("MediaArchiveSize", 1)));
4143
1ec3e1e18f50 Add missing tag "Retrieve AE Title (0008,0054)" in C-FIND SCP responses
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4140
diff changeset
325 defaultLocalAet_ = lock.GetConfiguration().GetOrthancAET();
3939
c205f670098e new configuration options: BuiltinDecoderTranscoderOrder and IngestTranscoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3938
diff changeset
326 jobsEngine_.SetWorkersCount(lock.GetConfiguration().GetUnsignedIntegerParameter("ConcurrentJobs", 2));
c205f670098e new configuration options: BuiltinDecoderTranscoderOrder and IngestTranscoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3938
diff changeset
327 saveJobs_ = lock.GetConfiguration().GetBooleanParameter("SaveJobs", true);
c205f670098e new configuration options: BuiltinDecoderTranscoderOrder and IngestTranscoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3938
diff changeset
328 metricsRegistry_->SetEnabled(lock.GetConfiguration().GetBooleanParameter("MetricsEnabled", true));
c205f670098e new configuration options: BuiltinDecoderTranscoderOrder and IngestTranscoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3938
diff changeset
329
c205f670098e new configuration options: BuiltinDecoderTranscoderOrder and IngestTranscoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3938
diff changeset
330 // New configuration options in Orthanc 1.5.1
c205f670098e new configuration options: BuiltinDecoderTranscoderOrder and IngestTranscoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3938
diff changeset
331 findStorageAccessMode_ = StringToFindStorageAccessMode(lock.GetConfiguration().GetStringParameter("StorageAccessOnFind", "Always"));
c205f670098e new configuration options: BuiltinDecoderTranscoderOrder and IngestTranscoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3938
diff changeset
332 limitFindInstances_ = lock.GetConfiguration().GetUnsignedIntegerParameter("LimitFindInstances", 0);
c205f670098e new configuration options: BuiltinDecoderTranscoderOrder and IngestTranscoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3938
diff changeset
333 limitFindResults_ = lock.GetConfiguration().GetUnsignedIntegerParameter("LimitFindResults", 0);
c205f670098e new configuration options: BuiltinDecoderTranscoderOrder and IngestTranscoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3938
diff changeset
334
c205f670098e new configuration options: BuiltinDecoderTranscoderOrder and IngestTranscoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3938
diff changeset
335 // New configuration option in Orthanc 1.6.0
c205f670098e new configuration options: BuiltinDecoderTranscoderOrder and IngestTranscoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3938
diff changeset
336 storageCommitmentReports_.reset(new StorageCommitmentReports(lock.GetConfiguration().GetUnsignedIntegerParameter("StorageCommitmentReportsSize", 100)));
c205f670098e new configuration options: BuiltinDecoderTranscoderOrder and IngestTranscoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3938
diff changeset
337
c205f670098e new configuration options: BuiltinDecoderTranscoderOrder and IngestTranscoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3938
diff changeset
338 // New options in Orthanc 1.7.0
c205f670098e new configuration options: BuiltinDecoderTranscoderOrder and IngestTranscoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3938
diff changeset
339 transcodeDicomProtocol_ = lock.GetConfiguration().GetBooleanParameter("TranscodeDicomProtocol", true);
c205f670098e new configuration options: BuiltinDecoderTranscoderOrder and IngestTranscoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3938
diff changeset
340 builtinDecoderTranscoderOrder_ = StringToBuiltinDecoderTranscoderOrder(lock.GetConfiguration().GetStringParameter("BuiltinDecoderTranscoderOrder", "After"));
c205f670098e new configuration options: BuiltinDecoderTranscoderOrder and IngestTranscoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3938
diff changeset
341 lossyQuality = lock.GetConfiguration().GetUnsignedIntegerParameter("DicomLossyTranscodingQuality", 90);
3677
4182cde57afb refactoring FindStorageAccessMode
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3640
diff changeset
342
3939
c205f670098e new configuration options: BuiltinDecoderTranscoderOrder and IngestTranscoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3938
diff changeset
343 std::string s;
c205f670098e new configuration options: BuiltinDecoderTranscoderOrder and IngestTranscoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3938
diff changeset
344 if (lock.GetConfiguration().LookupStringParameter(s, "IngestTranscoding"))
c205f670098e new configuration options: BuiltinDecoderTranscoderOrder and IngestTranscoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3938
diff changeset
345 {
c205f670098e new configuration options: BuiltinDecoderTranscoderOrder and IngestTranscoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3938
diff changeset
346 if (LookupTransferSyntax(ingestTransferSyntax_, s))
c205f670098e new configuration options: BuiltinDecoderTranscoderOrder and IngestTranscoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3938
diff changeset
347 {
c205f670098e new configuration options: BuiltinDecoderTranscoderOrder and IngestTranscoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3938
diff changeset
348 isIngestTranscoding_ = true;
c205f670098e new configuration options: BuiltinDecoderTranscoderOrder and IngestTranscoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3938
diff changeset
349 LOG(WARNING) << "Incoming DICOM instances will automatically be transcoded to "
c205f670098e new configuration options: BuiltinDecoderTranscoderOrder and IngestTranscoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3938
diff changeset
350 << "transfer syntax: " << GetTransferSyntaxUid(ingestTransferSyntax_);
4384
7e0d015ad109 new configuration options IngestTranscodingOfUncompressed and IngestTranscodingOfCompressed
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4376
diff changeset
351
4465
fe774d8e904b New configuration option: "DicomScuPreferredTransferSyntax" to control transcoding in C-STORE SCU
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4460
diff changeset
352 // New options in Orthanc 1.8.2
4384
7e0d015ad109 new configuration options IngestTranscodingOfUncompressed and IngestTranscodingOfCompressed
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4376
diff changeset
353 ingestTranscodingOfUncompressed_ = lock.GetConfiguration().GetBooleanParameter("IngestTranscodingOfUncompressed", true);
7e0d015ad109 new configuration options IngestTranscodingOfUncompressed and IngestTranscodingOfCompressed
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4376
diff changeset
354 ingestTranscodingOfCompressed_ = lock.GetConfiguration().GetBooleanParameter("IngestTranscodingOfCompressed", true);
7e0d015ad109 new configuration options IngestTranscodingOfUncompressed and IngestTranscodingOfCompressed
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4376
diff changeset
355
7e0d015ad109 new configuration options IngestTranscodingOfUncompressed and IngestTranscodingOfCompressed
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4376
diff changeset
356 LOG(WARNING) << " Ingest transcoding will "
7e0d015ad109 new configuration options IngestTranscodingOfUncompressed and IngestTranscodingOfCompressed
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4376
diff changeset
357 << (ingestTranscodingOfUncompressed_ ? "be applied" : "*not* be applied")
7e0d015ad109 new configuration options IngestTranscodingOfUncompressed and IngestTranscodingOfCompressed
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4376
diff changeset
358 << " to uncompressed transfer syntaxes (Little Endian Implicit/Explicit, Big Endian Explicit)";
7e0d015ad109 new configuration options IngestTranscodingOfUncompressed and IngestTranscodingOfCompressed
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4376
diff changeset
359
7e0d015ad109 new configuration options IngestTranscodingOfUncompressed and IngestTranscodingOfCompressed
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4376
diff changeset
360 LOG(WARNING) << " Ingest transcoding will "
7e0d015ad109 new configuration options IngestTranscodingOfUncompressed and IngestTranscodingOfCompressed
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4376
diff changeset
361 << (ingestTranscodingOfCompressed_ ? "be applied" : "*not* be applied")
7e0d015ad109 new configuration options IngestTranscodingOfUncompressed and IngestTranscodingOfCompressed
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4376
diff changeset
362 << " to compressed transfer syntaxes";
3939
c205f670098e new configuration options: BuiltinDecoderTranscoderOrder and IngestTranscoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3938
diff changeset
363 }
c205f670098e new configuration options: BuiltinDecoderTranscoderOrder and IngestTranscoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3938
diff changeset
364 else
c205f670098e new configuration options: BuiltinDecoderTranscoderOrder and IngestTranscoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3938
diff changeset
365 {
c205f670098e new configuration options: BuiltinDecoderTranscoderOrder and IngestTranscoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3938
diff changeset
366 throw OrthancException(ErrorCode_ParameterOutOfRange,
c205f670098e new configuration options: BuiltinDecoderTranscoderOrder and IngestTranscoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3938
diff changeset
367 "Unknown transfer syntax for ingest transcoding: " + s);
c205f670098e new configuration options: BuiltinDecoderTranscoderOrder and IngestTranscoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3938
diff changeset
368 }
c205f670098e new configuration options: BuiltinDecoderTranscoderOrder and IngestTranscoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3938
diff changeset
369 }
c205f670098e new configuration options: BuiltinDecoderTranscoderOrder and IngestTranscoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3938
diff changeset
370 else
c205f670098e new configuration options: BuiltinDecoderTranscoderOrder and IngestTranscoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3938
diff changeset
371 {
3941
771dbd9eb3bd class CleaningInstancesJob to share cleaning code by merge/split jobs
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3939
diff changeset
372 isIngestTranscoding_ = false;
3939
c205f670098e new configuration options: BuiltinDecoderTranscoderOrder and IngestTranscoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3938
diff changeset
373 LOG(INFO) << "Automated transcoding of incoming DICOM instances is disabled";
c205f670098e new configuration options: BuiltinDecoderTranscoderOrder and IngestTranscoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3938
diff changeset
374 }
4375
208029732d51 New config option "DeidentifyDimseQueryLogs"
Mark Poscablo <Mark.Poscablo@varian.com>
parents: 4274
diff changeset
375
4465
fe774d8e904b New configuration option: "DicomScuPreferredTransferSyntax" to control transcoding in C-STORE SCU
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4460
diff changeset
376 // New options in Orthanc 1.8.2
4376
b002f9abe802 review of changeset 4375:208029732d51
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4375
diff changeset
377 if (lock.GetConfiguration().GetBooleanParameter("DeidentifyLogs", true))
4375
208029732d51 New config option "DeidentifyDimseQueryLogs"
Mark Poscablo <Mark.Poscablo@varian.com>
parents: 4274
diff changeset
378 {
4376
b002f9abe802 review of changeset 4375:208029732d51
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4375
diff changeset
379 deidentifyLogs_ = true;
b002f9abe802 review of changeset 4375:208029732d51
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4375
diff changeset
380 CLOG(INFO, DICOM) << "Deidentification of log contents (notably for DIMSE queries) is enabled";
4375
208029732d51 New config option "DeidentifyDimseQueryLogs"
Mark Poscablo <Mark.Poscablo@varian.com>
parents: 4274
diff changeset
381
4376
b002f9abe802 review of changeset 4375:208029732d51
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4375
diff changeset
382 DicomVersion version = StringToDicomVersion(
4677
521e39b3f2c0 Fix issue #146 (Update Anonyization to 2019c) - was actually updated to 2021b
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4666
diff changeset
383 lock.GetConfiguration().GetStringParameter("DeidentifyLogsDicomVersion", "2021b"));
4375
208029732d51 New config option "DeidentifyDimseQueryLogs"
Mark Poscablo <Mark.Poscablo@varian.com>
parents: 4274
diff changeset
384 CLOG(INFO, DICOM) << "Version of DICOM standard used for deidentification is "
4376
b002f9abe802 review of changeset 4375:208029732d51
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4375
diff changeset
385 << EnumerationToString(version);
b002f9abe802 review of changeset 4375:208029732d51
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4375
diff changeset
386
b002f9abe802 review of changeset 4375:208029732d51
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4375
diff changeset
387 logsDeidentifierRules_.SetupAnonymization(version);
4375
208029732d51 New config option "DeidentifyDimseQueryLogs"
Mark Poscablo <Mark.Poscablo@varian.com>
parents: 4274
diff changeset
388 }
208029732d51 New config option "DeidentifyDimseQueryLogs"
Mark Poscablo <Mark.Poscablo@varian.com>
parents: 4274
diff changeset
389 else
208029732d51 New config option "DeidentifyDimseQueryLogs"
Mark Poscablo <Mark.Poscablo@varian.com>
parents: 4274
diff changeset
390 {
4376
b002f9abe802 review of changeset 4375:208029732d51
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4375
diff changeset
391 deidentifyLogs_ = false;
b002f9abe802 review of changeset 4375:208029732d51
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4375
diff changeset
392 CLOG(INFO, DICOM) << "Deidentification of log contents (notably for DIMSE queries) is disabled";
4375
208029732d51 New config option "DeidentifyDimseQueryLogs"
Mark Poscablo <Mark.Poscablo@varian.com>
parents: 4274
diff changeset
393 }
4465
fe774d8e904b New configuration option: "DicomScuPreferredTransferSyntax" to control transcoding in C-STORE SCU
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4460
diff changeset
394
4473
68f52897c119 new URIs: /tools/accepted-transfer-syntaxes and /tools/unknown-sop-class-accepted to replace Lua callbacks for transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4465
diff changeset
395 // New options in Orthanc 1.9.0
4465
fe774d8e904b New configuration option: "DicomScuPreferredTransferSyntax" to control transcoding in C-STORE SCU
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4460
diff changeset
396 if (lock.GetConfiguration().LookupStringParameter(s, "DicomScuPreferredTransferSyntax") &&
fe774d8e904b New configuration option: "DicomScuPreferredTransferSyntax" to control transcoding in C-STORE SCU
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4460
diff changeset
397 !LookupTransferSyntax(preferredTransferSyntax_, s))
fe774d8e904b New configuration option: "DicomScuPreferredTransferSyntax" to control transcoding in C-STORE SCU
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4460
diff changeset
398 {
fe774d8e904b New configuration option: "DicomScuPreferredTransferSyntax" to control transcoding in C-STORE SCU
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4460
diff changeset
399 throw OrthancException(ErrorCode_ParameterOutOfRange,
fe774d8e904b New configuration option: "DicomScuPreferredTransferSyntax" to control transcoding in C-STORE SCU
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4460
diff changeset
400 "Unknown preferred transfer syntax: " + s);
fe774d8e904b New configuration option: "DicomScuPreferredTransferSyntax" to control transcoding in C-STORE SCU
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4460
diff changeset
401 }
fe774d8e904b New configuration option: "DicomScuPreferredTransferSyntax" to control transcoding in C-STORE SCU
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4460
diff changeset
402
fe774d8e904b New configuration option: "DicomScuPreferredTransferSyntax" to control transcoding in C-STORE SCU
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4460
diff changeset
403 CLOG(INFO, DICOM) << "Preferred transfer syntax for Orthanc C-STORE SCU: "
fe774d8e904b New configuration option: "DicomScuPreferredTransferSyntax" to control transcoding in C-STORE SCU
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4460
diff changeset
404 << GetTransferSyntaxUid(preferredTransferSyntax_);
4473
68f52897c119 new URIs: /tools/accepted-transfer-syntaxes and /tools/unknown-sop-class-accepted to replace Lua callbacks for transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4465
diff changeset
405
68f52897c119 new URIs: /tools/accepted-transfer-syntaxes and /tools/unknown-sop-class-accepted to replace Lua callbacks for transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4465
diff changeset
406 lock.GetConfiguration().GetAcceptedTransferSyntaxes(acceptedTransferSyntaxes_);
68f52897c119 new URIs: /tools/accepted-transfer-syntaxes and /tools/unknown-sop-class-accepted to replace Lua callbacks for transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4465
diff changeset
407
68f52897c119 new URIs: /tools/accepted-transfer-syntaxes and /tools/unknown-sop-class-accepted to replace Lua callbacks for transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4465
diff changeset
408 isUnknownSopClassAccepted_ = lock.GetConfiguration().GetBooleanParameter("UnknownSopClassAccepted", false);
3939
c205f670098e new configuration options: BuiltinDecoderTranscoderOrder and IngestTranscoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3938
diff changeset
409 }
3894
8f7ad4989fec transcoding to uncompressed transfer syntaxes over DICOM protocol is implemented
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3839
diff changeset
410
3939
c205f670098e new configuration options: BuiltinDecoderTranscoderOrder and IngestTranscoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3938
diff changeset
411 jobsEngine_.SetThreadSleep(unitTesting ? 20 : 200);
2940
4767d36679ed refactoring access to Orthanc configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2925
diff changeset
412
3939
c205f670098e new configuration options: BuiltinDecoderTranscoderOrder and IngestTranscoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3938
diff changeset
413 listeners_.push_back(ServerListener(luaListener_, "Lua"));
c205f670098e new configuration options: BuiltinDecoderTranscoderOrder and IngestTranscoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3938
diff changeset
414 changeThread_ = boost::thread(ChangeThread, this, (unitTesting ? 20 : 100));
c205f670098e new configuration options: BuiltinDecoderTranscoderOrder and IngestTranscoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3938
diff changeset
415
c205f670098e new configuration options: BuiltinDecoderTranscoderOrder and IngestTranscoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3938
diff changeset
416 dynamic_cast<DcmtkTranscoder&>(*dcmtkTranscoder_).SetLossyQuality(lossyQuality);
c205f670098e new configuration options: BuiltinDecoderTranscoderOrder and IngestTranscoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3938
diff changeset
417 }
c205f670098e new configuration options: BuiltinDecoderTranscoderOrder and IngestTranscoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3938
diff changeset
418 catch (OrthancException&)
c205f670098e new configuration options: BuiltinDecoderTranscoderOrder and IngestTranscoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3938
diff changeset
419 {
c205f670098e new configuration options: BuiltinDecoderTranscoderOrder and IngestTranscoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3938
diff changeset
420 Stop();
c205f670098e new configuration options: BuiltinDecoderTranscoderOrder and IngestTranscoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3938
diff changeset
421 throw;
c205f670098e new configuration options: BuiltinDecoderTranscoderOrder and IngestTranscoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3938
diff changeset
422 }
224
4eb0c7ce86c9 refactoring for store
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
423 }
4eb0c7ce86c9 refactoring for store
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
424
1436
0a3e3be59094 uncoupling of SignalChange for Lua scripts
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1434
diff changeset
425
0a3e3be59094 uncoupling of SignalChange for Lua scripts
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1434
diff changeset
426
0a3e3be59094 uncoupling of SignalChange for Lua scripts
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1434
diff changeset
427 ServerContext::~ServerContext()
0a3e3be59094 uncoupling of SignalChange for Lua scripts
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1434
diff changeset
428 {
1453
c0bdc47165ef code to warn about possible threading problems
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1447
diff changeset
429 if (!done_)
c0bdc47165ef code to warn about possible threading problems
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1447
diff changeset
430 {
c0bdc47165ef code to warn about possible threading problems
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1447
diff changeset
431 LOG(ERROR) << "INTERNAL ERROR: ServerContext::Stop() should be invoked manually to avoid mess in the destruction order!";
c0bdc47165ef code to warn about possible threading problems
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1447
diff changeset
432 Stop();
c0bdc47165ef code to warn about possible threading problems
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1447
diff changeset
433 }
1447
5ba7471780ae refactoring: HttpToolbox, DumpJson in Lua
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1436
diff changeset
434 }
5ba7471780ae refactoring: HttpToolbox, DumpJson in Lua
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1436
diff changeset
435
1436
0a3e3be59094 uncoupling of SignalChange for Lua scripts
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1434
diff changeset
436
1447
5ba7471780ae refactoring: HttpToolbox, DumpJson in Lua
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1436
diff changeset
437 void ServerContext::Stop()
5ba7471780ae refactoring: HttpToolbox, DumpJson in Lua
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1436
diff changeset
438 {
5ba7471780ae refactoring: HttpToolbox, DumpJson in Lua
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1436
diff changeset
439 if (!done_)
1436
0a3e3be59094 uncoupling of SignalChange for Lua scripts
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1434
diff changeset
440 {
1459
040d58493998 security
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1456
diff changeset
441 {
3947
cf6eb4fc6841 fix issue 179: use a shared mutex to avoid deadlock in python plugins
Alain Mazy <alain@mazy.be>
parents: 3945
diff changeset
442 boost::unique_lock<boost::shared_mutex> lock(listenersMutex_);
1459
040d58493998 security
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1456
diff changeset
443 listeners_.clear();
040d58493998 security
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1456
diff changeset
444 }
040d58493998 security
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1456
diff changeset
445
1447
5ba7471780ae refactoring: HttpToolbox, DumpJson in Lua
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1436
diff changeset
446 done_ = true;
5ba7471780ae refactoring: HttpToolbox, DumpJson in Lua
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1436
diff changeset
447
5ba7471780ae refactoring: HttpToolbox, DumpJson in Lua
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1436
diff changeset
448 if (changeThread_.joinable())
5ba7471780ae refactoring: HttpToolbox, DumpJson in Lua
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1436
diff changeset
449 {
5ba7471780ae refactoring: HttpToolbox, DumpJson in Lua
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1436
diff changeset
450 changeThread_.join();
5ba7471780ae refactoring: HttpToolbox, DumpJson in Lua
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1436
diff changeset
451 }
1453
c0bdc47165ef code to warn about possible threading problems
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1447
diff changeset
452
2672
3efc44fac209 periodically saving jobs
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2671
diff changeset
453 if (saveJobsThread_.joinable())
3efc44fac209 periodically saving jobs
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2671
diff changeset
454 {
3efc44fac209 periodically saving jobs
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2671
diff changeset
455 saveJobsThread_.join();
3efc44fac209 periodically saving jobs
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2671
diff changeset
456 }
3efc44fac209 periodically saving jobs
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2671
diff changeset
457
4024
1d2b31fc782f new 'changes': JobSubmitted, JobSuccess, JobFailure
Alain Mazy <alain@mazy.be>
parents: 4022
diff changeset
458 jobsEngine_.GetRegistry().ResetObserver();
2815
925d8dc03a23 unserialization of jobs from plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2808
diff changeset
459
925d8dc03a23 unserialization of jobs from plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2808
diff changeset
460 if (isJobsEngineUnserialized_)
925d8dc03a23 unserialization of jobs from plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2808
diff changeset
461 {
925d8dc03a23 unserialization of jobs from plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2808
diff changeset
462 // Avoid losing jobs if the JobsRegistry cannot be unserialized
925d8dc03a23 unserialization of jobs from plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2808
diff changeset
463 SaveJobsEngine();
925d8dc03a23 unserialization of jobs from plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2808
diff changeset
464 }
2668
d26dd081df97 saving jobs engine on exit
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2665
diff changeset
465
1453
c0bdc47165ef code to warn about possible threading problems
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1447
diff changeset
466 // Do not change the order below!
2570
2e879c796ec7 JobsRegistry::SubmitAndWait(), StoreScuJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2507
diff changeset
467 jobsEngine_.Stop();
1453
c0bdc47165ef code to warn about possible threading problems
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1447
diff changeset
468 index_.Stop();
1436
0a3e3be59094 uncoupling of SignalChange for Lua scripts
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1434
diff changeset
469 }
0a3e3be59094 uncoupling of SignalChange for Lua scripts
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1434
diff changeset
470 }
0a3e3be59094 uncoupling of SignalChange for Lua scripts
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1434
diff changeset
471
0a3e3be59094 uncoupling of SignalChange for Lua scripts
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1434
diff changeset
472
236
6d9be2b470b4 compression
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 233
diff changeset
473 void ServerContext::SetCompressionEnabled(bool enabled)
6d9be2b470b4 compression
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 233
diff changeset
474 {
6d9be2b470b4 compression
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 233
diff changeset
475 if (enabled)
6d9be2b470b4 compression
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 233
diff changeset
476 LOG(WARNING) << "Disk compression is enabled";
6d9be2b470b4 compression
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 233
diff changeset
477 else
6d9be2b470b4 compression
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 233
diff changeset
478 LOG(WARNING) << "Disk compression is disabled";
6d9be2b470b4 compression
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 233
diff changeset
479
6d9be2b470b4 compression
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 233
diff changeset
480 compressionEnabled_ = enabled;
6d9be2b470b4 compression
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 233
diff changeset
481 }
6d9be2b470b4 compression
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 233
diff changeset
482
1549
e5e975e9b738 refactoring and simplification of StorageAccessor
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1548
diff changeset
483
1126
bf67431a7383 handling of file content type in IStorageArea
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1124
diff changeset
484 void ServerContext::RemoveFile(const std::string& fileUuid,
bf67431a7383 handling of file content type in IStorageArea
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1124
diff changeset
485 FileContentType type)
227
209ca3f6db62 dicom-scu from rest
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 226
diff changeset
486 {
3175
574890d14c92 new metrics: orthanc_store_dicom_duration_ms, orthanc_storage_[create|read|remove]_duration_ms
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3174
diff changeset
487 StorageAccessor accessor(area_, GetMetricsRegistry());
574890d14c92 new metrics: orthanc_store_dicom_duration_ms, orthanc_storage_[create|read|remove]_duration_ms
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3174
diff changeset
488 accessor.Remove(fileUuid, type);
227
209ca3f6db62 dicom-scu from rest
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 226
diff changeset
489 }
209ca3f6db62 dicom-scu from rest
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 226
diff changeset
490
996
cf52f3bcb2b3 clarification of Lua classes wrt multithreading
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 995
diff changeset
491
3912
7610af1532c3 prototyping automated transcoding of incoming DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3911
diff changeset
492 StoreStatus ServerContext::StoreAfterTranscoding(std::string& resultPublicId,
7610af1532c3 prototyping automated transcoding of incoming DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3911
diff changeset
493 DicomInstanceToStore& dicom,
7610af1532c3 prototyping automated transcoding of incoming DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3911
diff changeset
494 StoreInstanceMode mode)
1004
a226e0959d8b DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1002
diff changeset
495 {
3814
023b2a9f3aa1 new enum: StoreInstanceMode
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3813
diff changeset
496 bool overwrite;
023b2a9f3aa1 new enum: StoreInstanceMode
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3813
diff changeset
497 switch (mode)
023b2a9f3aa1 new enum: StoreInstanceMode
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3813
diff changeset
498 {
023b2a9f3aa1 new enum: StoreInstanceMode
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3813
diff changeset
499 case StoreInstanceMode_Default:
023b2a9f3aa1 new enum: StoreInstanceMode
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3813
diff changeset
500 overwrite = overwriteInstances_;
023b2a9f3aa1 new enum: StoreInstanceMode
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3813
diff changeset
501 break;
023b2a9f3aa1 new enum: StoreInstanceMode
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3813
diff changeset
502
023b2a9f3aa1 new enum: StoreInstanceMode
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3813
diff changeset
503 case StoreInstanceMode_OverwriteDuplicate:
023b2a9f3aa1 new enum: StoreInstanceMode
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3813
diff changeset
504 overwrite = true;
023b2a9f3aa1 new enum: StoreInstanceMode
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3813
diff changeset
505 break;
023b2a9f3aa1 new enum: StoreInstanceMode
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3813
diff changeset
506
023b2a9f3aa1 new enum: StoreInstanceMode
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3813
diff changeset
507 case StoreInstanceMode_IgnoreDuplicate:
023b2a9f3aa1 new enum: StoreInstanceMode
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3813
diff changeset
508 overwrite = false;
023b2a9f3aa1 new enum: StoreInstanceMode
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3813
diff changeset
509 break;
023b2a9f3aa1 new enum: StoreInstanceMode
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3813
diff changeset
510
023b2a9f3aa1 new enum: StoreInstanceMode
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3813
diff changeset
511 default:
023b2a9f3aa1 new enum: StoreInstanceMode
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3813
diff changeset
512 throw OrthancException(ErrorCode_ParameterOutOfRange);
4499
6f99949b2878 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4473
diff changeset
513 }
6f99949b2878 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4473
diff changeset
514
6f99949b2878 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4473
diff changeset
515 bool hasPixelDataOffset;
6f99949b2878 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4473
diff changeset
516 uint64_t pixelDataOffset;
6f99949b2878 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4473
diff changeset
517 hasPixelDataOffset = DicomStreamReader::LookupPixelDataOffset(
6f99949b2878 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4473
diff changeset
518 pixelDataOffset, dicom.GetBufferData(), dicom.GetBufferSize());
4506
ac69c9f76c71 refactoring ServerIndex::Store()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4505
diff changeset
519
4507
b4c58795f3a8 widening the use of DicomTransferSyntax enum
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4506
diff changeset
520 DicomTransferSyntax transferSyntax;
4506
ac69c9f76c71 refactoring ServerIndex::Store()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4505
diff changeset
521 bool hasTransferSyntax = dicom.LookupTransferSyntax(transferSyntax);
4507
b4c58795f3a8 widening the use of DicomTransferSyntax enum
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4506
diff changeset
522
4505
97d103b57cd1 removed cached dicom summary from DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4504
diff changeset
523 DicomMap summary;
4507
b4c58795f3a8 widening the use of DicomTransferSyntax enum
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4506
diff changeset
524 dicom.GetSummary(summary);
4505
97d103b57cd1 removed cached dicom summary from DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4504
diff changeset
525
1004
a226e0959d8b DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1002
diff changeset
526 try
a226e0959d8b DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1002
diff changeset
527 {
3175
574890d14c92 new metrics: orthanc_store_dicom_duration_ms, orthanc_storage_[create|read|remove]_duration_ms
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3174
diff changeset
528 MetricsRegistry::Timer timer(GetMetricsRegistry(), "orthanc_store_dicom_duration_ms");
574890d14c92 new metrics: orthanc_store_dicom_duration_ms, orthanc_storage_[create|read|remove]_duration_ms
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3174
diff changeset
529 StorageAccessor accessor(area_, GetMetricsRegistry());
1549
e5e975e9b738 refactoring and simplification of StorageAccessor
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1548
diff changeset
530
4507
b4c58795f3a8 widening the use of DicomTransferSyntax enum
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4506
diff changeset
531 DicomInstanceHasher hasher(summary);
b4c58795f3a8 widening the use of DicomTransferSyntax enum
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4506
diff changeset
532 resultPublicId = hasher.HashInstance();
1004
a226e0959d8b DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1002
diff changeset
533
4504
7d1eabfac6e0 removed cached dicom-as-json from DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4500
diff changeset
534 Json::Value dicomAsJson;
4507
b4c58795f3a8 widening the use of DicomTransferSyntax enum
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4506
diff changeset
535 dicom.GetDicomAsJson(dicomAsJson);
4504
7d1eabfac6e0 removed cached dicom-as-json from DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4500
diff changeset
536
1574
0c29ebe80ac9 give access to full request origin in ReceivedInstanceFilter (Lua)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1550
diff changeset
537 Json::Value simplifiedTags;
4504
7d1eabfac6e0 removed cached dicom-as-json from DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4500
diff changeset
538 Toolbox::SimplifyDicomAsJson(simplifiedTags, dicomAsJson, DicomToJsonFormat_Human);
1004
a226e0959d8b DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1002
diff changeset
539
a226e0959d8b DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1002
diff changeset
540 // Test if the instance must be filtered out
1433
461e7554bff7 refactoring: LuaScripting
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1427
diff changeset
541 bool accepted = true;
461e7554bff7 refactoring: LuaScripting
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1427
diff changeset
542
461e7554bff7 refactoring: LuaScripting
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1427
diff changeset
543 {
3947
cf6eb4fc6841 fix issue 179: use a shared mutex to avoid deadlock in python plugins
Alain Mazy <alain@mazy.be>
parents: 3945
diff changeset
544 boost::shared_lock<boost::shared_mutex> lock(listenersMutex_);
1453
c0bdc47165ef code to warn about possible threading problems
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1447
diff changeset
545
c0bdc47165ef code to warn about possible threading problems
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1447
diff changeset
546 for (ServerListeners::iterator it = listeners_.begin(); it != listeners_.end(); ++it)
1433
461e7554bff7 refactoring: LuaScripting
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1427
diff changeset
547 {
1453
c0bdc47165ef code to warn about possible threading problems
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1447
diff changeset
548 try
1433
461e7554bff7 refactoring: LuaScripting
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1427
diff changeset
549 {
1574
0c29ebe80ac9 give access to full request origin in ReceivedInstanceFilter (Lua)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1550
diff changeset
550 if (!it->GetListener().FilterIncomingInstance(dicom, simplifiedTags))
1453
c0bdc47165ef code to warn about possible threading problems
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1447
diff changeset
551 {
c0bdc47165ef code to warn about possible threading problems
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1447
diff changeset
552 accepted = false;
c0bdc47165ef code to warn about possible threading problems
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1447
diff changeset
553 break;
c0bdc47165ef code to warn about possible threading problems
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1447
diff changeset
554 }
1433
461e7554bff7 refactoring: LuaScripting
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1427
diff changeset
555 }
1453
c0bdc47165ef code to warn about possible threading problems
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1447
diff changeset
556 catch (OrthancException& e)
c0bdc47165ef code to warn about possible threading problems
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1447
diff changeset
557 {
c0bdc47165ef code to warn about possible threading problems
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1447
diff changeset
558 LOG(ERROR) << "Error in the " << it->GetDescription()
2135
cadfe0a2a393 fix in the sample basic plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2134
diff changeset
559 << " callback while receiving an instance: " << e.What()
cadfe0a2a393 fix in the sample basic plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2134
diff changeset
560 << " (code " << e.GetErrorCode() << ")";
1453
c0bdc47165ef code to warn about possible threading problems
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1447
diff changeset
561 throw;
c0bdc47165ef code to warn about possible threading problems
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1447
diff changeset
562 }
1433
461e7554bff7 refactoring: LuaScripting
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1427
diff changeset
563 }
461e7554bff7 refactoring: LuaScripting
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1427
diff changeset
564 }
461e7554bff7 refactoring: LuaScripting
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1427
diff changeset
565
461e7554bff7 refactoring: LuaScripting
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1427
diff changeset
566 if (!accepted)
1004
a226e0959d8b DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1002
diff changeset
567 {
a226e0959d8b DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1002
diff changeset
568 LOG(INFO) << "An incoming instance has been discarded by the filter";
a226e0959d8b DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1002
diff changeset
569 return StoreStatus_FilteredOut;
a226e0959d8b DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1002
diff changeset
570 }
a226e0959d8b DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1002
diff changeset
571
4457
789676a8c96a Refactoring and improvements to the cache of DICOM files in ServerContext
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4437
diff changeset
572 // Remove the file from the DicomCache (useful if
789676a8c96a Refactoring and improvements to the cache of DICOM files in ServerContext
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4437
diff changeset
573 // "OverwriteInstances" is set to "true")
789676a8c96a Refactoring and improvements to the cache of DICOM files in ServerContext
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4437
diff changeset
574 dicomCache_.Invalidate(resultPublicId);
789676a8c96a Refactoring and improvements to the cache of DICOM files in ServerContext
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4437
diff changeset
575 PublishDicomCacheMetrics();
2825
8aa6aef11b70 New configuration option "OverwriteInstances" to choose how duplicate SOPInstanceUID are handled
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2815
diff changeset
576
1549
e5e975e9b738 refactoring and simplification of StorageAccessor
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1548
diff changeset
577 // TODO Should we use "gzip" instead?
e5e975e9b738 refactoring and simplification of StorageAccessor
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1548
diff changeset
578 CompressionType compression = (compressionEnabled_ ? CompressionType_ZlibWithSize : CompressionType_None);
1004
a226e0959d8b DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1002
diff changeset
579
1549
e5e975e9b738 refactoring and simplification of StorageAccessor
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1548
diff changeset
580 FileInfo dicomInfo = accessor.Write(dicom.GetBufferData(), dicom.GetBufferSize(),
e5e975e9b738 refactoring and simplification of StorageAccessor
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1548
diff changeset
581 FileContentType_Dicom, compression, storeMD5_);
1004
a226e0959d8b DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1002
diff changeset
582
a226e0959d8b DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1002
diff changeset
583 ServerIndex::Attachments attachments;
a226e0959d8b DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1002
diff changeset
584 attachments.push_back(dicomInfo);
4500
3b4940bca158 added safeguards in Orthanc::FileInfo
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4499
diff changeset
585
4514
5b929e6b3c36 removal of "dicom-as-json" attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4513
diff changeset
586 FileInfo dicomUntilPixelData;
5b929e6b3c36 removal of "dicom-as-json" attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4513
diff changeset
587 if (hasPixelDataOffset &&
5b929e6b3c36 removal of "dicom-as-json" attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4513
diff changeset
588 (!area_.HasReadRange() ||
4519
a3c6678aa7b1 cppcheck
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4514
diff changeset
589 compressionEnabled_))
4500
3b4940bca158 added safeguards in Orthanc::FileInfo
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4499
diff changeset
590 {
4514
5b929e6b3c36 removal of "dicom-as-json" attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4513
diff changeset
591 dicomUntilPixelData = accessor.Write(dicom.GetBufferData(), pixelDataOffset,
5b929e6b3c36 removal of "dicom-as-json" attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4513
diff changeset
592 FileContentType_DicomUntilPixelData, compression, storeMD5_);
5b929e6b3c36 removal of "dicom-as-json" attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4513
diff changeset
593 attachments.push_back(dicomUntilPixelData);
4500
3b4940bca158 added safeguards in Orthanc::FileInfo
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4499
diff changeset
594 }
1004
a226e0959d8b DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1002
diff changeset
595
1067
ace99e272203 access metadata in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1066
diff changeset
596 typedef std::map<MetadataType, std::string> InstanceMetadata;
ace99e272203 access metadata in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1066
diff changeset
597 InstanceMetadata instanceMetadata;
4506
ac69c9f76c71 refactoring ServerIndex::Store()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4505
diff changeset
598 StoreStatus status = index_.Store(
ac69c9f76c71 refactoring ServerIndex::Store()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4505
diff changeset
599 instanceMetadata, summary, attachments, dicom.GetMetadata(), dicom.GetOrigin(), overwrite,
ac69c9f76c71 refactoring ServerIndex::Store()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4505
diff changeset
600 hasTransferSyntax, transferSyntax, hasPixelDataOffset, pixelDataOffset);
1004
a226e0959d8b DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1002
diff changeset
601
1433
461e7554bff7 refactoring: LuaScripting
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1427
diff changeset
602 // Only keep the metadata for the "instance" level
4506
ac69c9f76c71 refactoring ServerIndex::Store()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4505
diff changeset
603 dicom.ClearMetadata();
1067
ace99e272203 access metadata in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1066
diff changeset
604
ace99e272203 access metadata in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1066
diff changeset
605 for (InstanceMetadata::const_iterator it = instanceMetadata.begin();
1304
7b6925b0890d cppcheck
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1288
diff changeset
606 it != instanceMetadata.end(); ++it)
1067
ace99e272203 access metadata in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1066
diff changeset
607 {
4506
ac69c9f76c71 refactoring ServerIndex::Store()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4505
diff changeset
608 dicom.AddMetadata(ResourceType_Instance, it->first, it->second);
1067
ace99e272203 access metadata in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1066
diff changeset
609 }
ace99e272203 access metadata in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1066
diff changeset
610
1004
a226e0959d8b DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1002
diff changeset
611 if (status != StoreStatus_Success)
a226e0959d8b DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1002
diff changeset
612 {
1549
e5e975e9b738 refactoring and simplification of StorageAccessor
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1548
diff changeset
613 accessor.Remove(dicomInfo);
4500
3b4940bca158 added safeguards in Orthanc::FileInfo
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4499
diff changeset
614
4514
5b929e6b3c36 removal of "dicom-as-json" attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4513
diff changeset
615 if (dicomUntilPixelData.IsValid())
4500
3b4940bca158 added safeguards in Orthanc::FileInfo
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4499
diff changeset
616 {
4514
5b929e6b3c36 removal of "dicom-as-json" attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4513
diff changeset
617 accessor.Remove(dicomUntilPixelData);
4500
3b4940bca158 added safeguards in Orthanc::FileInfo
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4499
diff changeset
618 }
1004
a226e0959d8b DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1002
diff changeset
619 }
a226e0959d8b DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1002
diff changeset
620
a226e0959d8b DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1002
diff changeset
621 switch (status)
a226e0959d8b DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1002
diff changeset
622 {
a226e0959d8b DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1002
diff changeset
623 case StoreStatus_Success:
a226e0959d8b DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1002
diff changeset
624 LOG(INFO) << "New instance stored";
a226e0959d8b DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1002
diff changeset
625 break;
a226e0959d8b DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1002
diff changeset
626
a226e0959d8b DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1002
diff changeset
627 case StoreStatus_AlreadyStored:
a226e0959d8b DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1002
diff changeset
628 LOG(INFO) << "Already stored";
a226e0959d8b DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1002
diff changeset
629 break;
a226e0959d8b DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1002
diff changeset
630
a226e0959d8b DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1002
diff changeset
631 case StoreStatus_Failure:
a226e0959d8b DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1002
diff changeset
632 LOG(ERROR) << "Store failure";
a226e0959d8b DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1002
diff changeset
633 break;
a226e0959d8b DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1002
diff changeset
634
a226e0959d8b DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1002
diff changeset
635 default:
a226e0959d8b DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1002
diff changeset
636 // This should never happen
a226e0959d8b DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1002
diff changeset
637 break;
a226e0959d8b DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1002
diff changeset
638 }
a226e0959d8b DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1002
diff changeset
639
a226e0959d8b DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1002
diff changeset
640 if (status == StoreStatus_Success ||
a226e0959d8b DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1002
diff changeset
641 status == StoreStatus_AlreadyStored)
a226e0959d8b DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1002
diff changeset
642 {
3947
cf6eb4fc6841 fix issue 179: use a shared mutex to avoid deadlock in python plugins
Alain Mazy <alain@mazy.be>
parents: 3945
diff changeset
643 boost::shared_lock<boost::shared_mutex> lock(listenersMutex_);
1453
c0bdc47165ef code to warn about possible threading problems
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1447
diff changeset
644
1433
461e7554bff7 refactoring: LuaScripting
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1427
diff changeset
645 for (ServerListeners::iterator it = listeners_.begin(); it != listeners_.end(); ++it)
1066
bb82e5e818e9 OnStoredInstance callback in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1065
diff changeset
646 {
bb82e5e818e9 OnStoredInstance callback in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1065
diff changeset
647 try
bb82e5e818e9 OnStoredInstance callback in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1065
diff changeset
648 {
1574
0c29ebe80ac9 give access to full request origin in ReceivedInstanceFilter (Lua)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1550
diff changeset
649 it->GetListener().SignalStoredInstance(resultPublicId, dicom, simplifiedTags);
1066
bb82e5e818e9 OnStoredInstance callback in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1065
diff changeset
650 }
bb82e5e818e9 OnStoredInstance callback in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1065
diff changeset
651 catch (OrthancException& e)
bb82e5e818e9 OnStoredInstance callback in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1065
diff changeset
652 {
1433
461e7554bff7 refactoring: LuaScripting
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1427
diff changeset
653 LOG(ERROR) << "Error in the " << it->GetDescription()
2135
cadfe0a2a393 fix in the sample basic plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2134
diff changeset
654 << " callback while receiving an instance: " << e.What()
cadfe0a2a393 fix in the sample basic plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2134
diff changeset
655 << " (code " << e.GetErrorCode() << ")";
1066
bb82e5e818e9 OnStoredInstance callback in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1065
diff changeset
656 }
bb82e5e818e9 OnStoredInstance callback in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1065
diff changeset
657 }
1004
a226e0959d8b DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1002
diff changeset
658 }
a226e0959d8b DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1002
diff changeset
659
a226e0959d8b DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1002
diff changeset
660 return status;
a226e0959d8b DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1002
diff changeset
661 }
a226e0959d8b DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1002
diff changeset
662 catch (OrthancException& e)
a226e0959d8b DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1002
diff changeset
663 {
a226e0959d8b DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1002
diff changeset
664 if (e.GetErrorCode() == ErrorCode_InexistentTag)
a226e0959d8b DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1002
diff changeset
665 {
4505
97d103b57cd1 removed cached dicom summary from DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4504
diff changeset
666 summary.LogMissingTagsForStore();
1004
a226e0959d8b DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1002
diff changeset
667 }
4505
97d103b57cd1 removed cached dicom summary from DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4504
diff changeset
668
1004
a226e0959d8b DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1002
diff changeset
669 throw;
a226e0959d8b DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1002
diff changeset
670 }
a226e0959d8b DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1002
diff changeset
671 }
a226e0959d8b DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1002
diff changeset
672
a226e0959d8b DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1002
diff changeset
673
3912
7610af1532c3 prototyping automated transcoding of incoming DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3911
diff changeset
674 StoreStatus ServerContext::Store(std::string& resultPublicId,
7610af1532c3 prototyping automated transcoding of incoming DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3911
diff changeset
675 DicomInstanceToStore& dicom,
7610af1532c3 prototyping automated transcoding of incoming DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3911
diff changeset
676 StoreInstanceMode mode)
7610af1532c3 prototyping automated transcoding of incoming DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3911
diff changeset
677 {
3939
c205f670098e new configuration options: BuiltinDecoderTranscoderOrder and IngestTranscoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3938
diff changeset
678 if (!isIngestTranscoding_)
3912
7610af1532c3 prototyping automated transcoding of incoming DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3911
diff changeset
679 {
3941
771dbd9eb3bd class CleaningInstancesJob to share cleaning code by merge/split jobs
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3939
diff changeset
680 // No automated transcoding. This was the only path in Orthanc <= 1.6.1.
3912
7610af1532c3 prototyping automated transcoding of incoming DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3911
diff changeset
681 return StoreAfterTranscoding(resultPublicId, dicom, mode);
7610af1532c3 prototyping automated transcoding of incoming DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3911
diff changeset
682 }
7610af1532c3 prototyping automated transcoding of incoming DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3911
diff changeset
683 else
7610af1532c3 prototyping automated transcoding of incoming DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3911
diff changeset
684 {
4384
7e0d015ad109 new configuration options IngestTranscodingOfUncompressed and IngestTranscodingOfCompressed
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4376
diff changeset
685 // Automated transcoding of incoming DICOM instance
7e0d015ad109 new configuration options IngestTranscodingOfUncompressed and IngestTranscodingOfCompressed
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4376
diff changeset
686
7e0d015ad109 new configuration options IngestTranscodingOfUncompressed and IngestTranscodingOfCompressed
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4376
diff changeset
687 bool transcode = false;
3945
0b3256c3ee14 simplified IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3944
diff changeset
688
3912
7610af1532c3 prototyping automated transcoding of incoming DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3911
diff changeset
689 DicomTransferSyntax sourceSyntax;
4507
b4c58795f3a8 widening the use of DicomTransferSyntax enum
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4506
diff changeset
690 if (!dicom.LookupTransferSyntax(sourceSyntax) ||
3939
c205f670098e new configuration options: BuiltinDecoderTranscoderOrder and IngestTranscoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3938
diff changeset
691 sourceSyntax == ingestTransferSyntax_)
3912
7610af1532c3 prototyping automated transcoding of incoming DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3911
diff changeset
692 {
4384
7e0d015ad109 new configuration options IngestTranscodingOfUncompressed and IngestTranscodingOfCompressed
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4376
diff changeset
693 // Don't transcode if the incoming DICOM is already in the proper transfer syntax
7e0d015ad109 new configuration options IngestTranscodingOfUncompressed and IngestTranscodingOfCompressed
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4376
diff changeset
694 transcode = false;
7e0d015ad109 new configuration options IngestTranscodingOfUncompressed and IngestTranscodingOfCompressed
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4376
diff changeset
695 }
7e0d015ad109 new configuration options IngestTranscodingOfUncompressed and IngestTranscodingOfCompressed
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4376
diff changeset
696 else if (!IsTranscodableTransferSyntax(sourceSyntax))
7e0d015ad109 new configuration options IngestTranscodingOfUncompressed and IngestTranscodingOfCompressed
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4376
diff changeset
697 {
7e0d015ad109 new configuration options IngestTranscodingOfUncompressed and IngestTranscodingOfCompressed
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4376
diff changeset
698 // Don't try to transcode video files, this is useless (new in
7e0d015ad109 new configuration options IngestTranscodingOfUncompressed and IngestTranscodingOfCompressed
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4376
diff changeset
699 // Orthanc 1.8.2). This could be accepted in the future if
7e0d015ad109 new configuration options IngestTranscodingOfUncompressed and IngestTranscodingOfCompressed
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4376
diff changeset
700 // video transcoding gets implemented.
7e0d015ad109 new configuration options IngestTranscodingOfUncompressed and IngestTranscodingOfCompressed
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4376
diff changeset
701 transcode = false;
7e0d015ad109 new configuration options IngestTranscodingOfUncompressed and IngestTranscodingOfCompressed
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4376
diff changeset
702 }
7e0d015ad109 new configuration options IngestTranscodingOfUncompressed and IngestTranscodingOfCompressed
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4376
diff changeset
703 else if (IsUncompressedTransferSyntax(sourceSyntax))
7e0d015ad109 new configuration options IngestTranscodingOfUncompressed and IngestTranscodingOfCompressed
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4376
diff changeset
704 {
7e0d015ad109 new configuration options IngestTranscodingOfUncompressed and IngestTranscodingOfCompressed
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4376
diff changeset
705 // This is an uncompressed transfer syntax (new in Orthanc 1.8.2)
7e0d015ad109 new configuration options IngestTranscodingOfUncompressed and IngestTranscodingOfCompressed
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4376
diff changeset
706 transcode = ingestTranscodingOfUncompressed_;
7e0d015ad109 new configuration options IngestTranscodingOfUncompressed and IngestTranscodingOfCompressed
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4376
diff changeset
707 }
7e0d015ad109 new configuration options IngestTranscodingOfUncompressed and IngestTranscodingOfCompressed
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4376
diff changeset
708 else
7e0d015ad109 new configuration options IngestTranscodingOfUncompressed and IngestTranscodingOfCompressed
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4376
diff changeset
709 {
7e0d015ad109 new configuration options IngestTranscodingOfUncompressed and IngestTranscodingOfCompressed
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4376
diff changeset
710 // This is an compressed transfer syntax (new in Orthanc 1.8.2)
7e0d015ad109 new configuration options IngestTranscodingOfUncompressed and IngestTranscodingOfCompressed
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4376
diff changeset
711 transcode = ingestTranscodingOfCompressed_;
7e0d015ad109 new configuration options IngestTranscodingOfUncompressed and IngestTranscodingOfCompressed
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4376
diff changeset
712 }
7e0d015ad109 new configuration options IngestTranscodingOfUncompressed and IngestTranscodingOfCompressed
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4376
diff changeset
713
7e0d015ad109 new configuration options IngestTranscodingOfUncompressed and IngestTranscodingOfCompressed
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4376
diff changeset
714 if (!transcode)
7e0d015ad109 new configuration options IngestTranscodingOfUncompressed and IngestTranscodingOfCompressed
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4376
diff changeset
715 {
3912
7610af1532c3 prototyping automated transcoding of incoming DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3911
diff changeset
716 // No transcoding
7610af1532c3 prototyping automated transcoding of incoming DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3911
diff changeset
717 return StoreAfterTranscoding(resultPublicId, dicom, mode);
7610af1532c3 prototyping automated transcoding of incoming DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3911
diff changeset
718 }
7610af1532c3 prototyping automated transcoding of incoming DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3911
diff changeset
719 else
4384
7e0d015ad109 new configuration options IngestTranscodingOfUncompressed and IngestTranscodingOfCompressed
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4376
diff changeset
720 {
7e0d015ad109 new configuration options IngestTranscodingOfUncompressed and IngestTranscodingOfCompressed
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4376
diff changeset
721 // Trancoding
3912
7610af1532c3 prototyping automated transcoding of incoming DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3911
diff changeset
722 std::set<DicomTransferSyntax> syntaxes;
3939
c205f670098e new configuration options: BuiltinDecoderTranscoderOrder and IngestTranscoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3938
diff changeset
723 syntaxes.insert(ingestTransferSyntax_);
4384
7e0d015ad109 new configuration options IngestTranscodingOfUncompressed and IngestTranscodingOfCompressed
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4376
diff changeset
724
3945
0b3256c3ee14 simplified IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3944
diff changeset
725 IDicomTranscoder::DicomImage source;
0b3256c3ee14 simplified IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3944
diff changeset
726 source.SetExternalBuffer(dicom.GetBufferData(), dicom.GetBufferSize());
4384
7e0d015ad109 new configuration options IngestTranscodingOfUncompressed and IngestTranscodingOfCompressed
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4376
diff changeset
727
3945
0b3256c3ee14 simplified IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3944
diff changeset
728 IDicomTranscoder::DicomImage transcoded;
3951
5fe8c6d3212e removed useless information "hasSopInstanceUidChanged"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3947
diff changeset
729 if (Transcode(transcoded, source, syntaxes, true /* allow new SOP instance UID */))
3912
7610af1532c3 prototyping automated transcoding of incoming DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3911
diff changeset
730 {
3945
0b3256c3ee14 simplified IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3944
diff changeset
731 std::unique_ptr<ParsedDicomFile> tmp(transcoded.ReleaseAsParsedDicomFile());
0b3256c3ee14 simplified IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3944
diff changeset
732
4508
8f9090b137f1 Optimization in C-STORE SCP by avoiding an unnecessary DICOM parsing
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4507
diff changeset
733 std::unique_ptr<DicomInstanceToStore> toStore(DicomInstanceToStore::CreateFromParsedDicomFile(*tmp));
8f9090b137f1 Optimization in C-STORE SCP by avoiding an unnecessary DICOM parsing
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4507
diff changeset
734 toStore->SetOrigin(dicom.GetOrigin());
3912
7610af1532c3 prototyping automated transcoding of incoming DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3911
diff changeset
735
4508
8f9090b137f1 Optimization in C-STORE SCP by avoiding an unnecessary DICOM parsing
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4507
diff changeset
736 StoreStatus ok = StoreAfterTranscoding(resultPublicId, *toStore, mode);
3938
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3931
diff changeset
737 assert(resultPublicId == tmp->GetHasher().HashInstance());
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3931
diff changeset
738
3912
7610af1532c3 prototyping automated transcoding of incoming DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3911
diff changeset
739 return ok;
7610af1532c3 prototyping automated transcoding of incoming DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3911
diff changeset
740 }
3945
0b3256c3ee14 simplified IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3944
diff changeset
741 else
0b3256c3ee14 simplified IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3944
diff changeset
742 {
0b3256c3ee14 simplified IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3944
diff changeset
743 // Cannot transcode => store the original file
0b3256c3ee14 simplified IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3944
diff changeset
744 return StoreAfterTranscoding(resultPublicId, dicom, mode);
0b3256c3ee14 simplified IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3944
diff changeset
745 }
3912
7610af1532c3 prototyping automated transcoding of incoming DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3911
diff changeset
746 }
7610af1532c3 prototyping automated transcoding of incoming DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3911
diff changeset
747 }
7610af1532c3 prototyping automated transcoding of incoming DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3911
diff changeset
748 }
7610af1532c3 prototyping automated transcoding of incoming DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3911
diff changeset
749
7610af1532c3 prototyping automated transcoding of incoming DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3911
diff changeset
750
1146
200fcac0deb4 optimization for access to attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1145
diff changeset
751 void ServerContext::AnswerAttachment(RestApiOutput& output,
1700
f5ddbd9239dd New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1632
diff changeset
752 const std::string& resourceId,
1146
200fcac0deb4 optimization for access to attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1145
diff changeset
753 FileContentType content)
226
8a26a8e85edf refactoring to read files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 224
diff changeset
754 {
232
5368bbe813cf refactoring of attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 227
diff changeset
755 FileInfo attachment;
4627
f7d5372b59b3 handling revisions of attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4623
diff changeset
756 int64_t revision;
f7d5372b59b3 handling revisions of attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4623
diff changeset
757 if (!index_.LookupAttachment(attachment, revision, resourceId, content))
232
5368bbe813cf refactoring of attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 227
diff changeset
758 {
1700
f5ddbd9239dd New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1632
diff changeset
759 throw OrthancException(ErrorCode_UnknownResource);
236
6d9be2b470b4 compression
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 233
diff changeset
760 }
4627
f7d5372b59b3 handling revisions of attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4623
diff changeset
761 else
f7d5372b59b3 handling revisions of attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4623
diff changeset
762 {
f7d5372b59b3 handling revisions of attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4623
diff changeset
763 StorageAccessor accessor(area_, GetMetricsRegistry());
f7d5372b59b3 handling revisions of attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4623
diff changeset
764 accessor.AnswerFile(output, attachment, GetFileContentMime(content));
f7d5372b59b3 handling revisions of attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4623
diff changeset
765 }
226
8a26a8e85edf refactoring to read files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 224
diff changeset
766 }
8a26a8e85edf refactoring to read files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 224
diff changeset
767
8a26a8e85edf refactoring to read files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 224
diff changeset
768
1700
f5ddbd9239dd New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1632
diff changeset
769 void ServerContext::ChangeAttachmentCompression(const std::string& resourceId,
f5ddbd9239dd New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1632
diff changeset
770 FileContentType attachmentType,
f5ddbd9239dd New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1632
diff changeset
771 CompressionType compression)
f5ddbd9239dd New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1632
diff changeset
772 {
f5ddbd9239dd New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1632
diff changeset
773 LOG(INFO) << "Changing compression type for attachment "
f5ddbd9239dd New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1632
diff changeset
774 << EnumerationToString(attachmentType)
f5ddbd9239dd New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1632
diff changeset
775 << " of resource " << resourceId << " to "
f5ddbd9239dd New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1632
diff changeset
776 << compression;
f5ddbd9239dd New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1632
diff changeset
777
f5ddbd9239dd New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1632
diff changeset
778 FileInfo attachment;
4627
f7d5372b59b3 handling revisions of attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4623
diff changeset
779 int64_t revision;
f7d5372b59b3 handling revisions of attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4623
diff changeset
780 if (!index_.LookupAttachment(attachment, revision, resourceId, attachmentType))
1700
f5ddbd9239dd New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1632
diff changeset
781 {
f5ddbd9239dd New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1632
diff changeset
782 throw OrthancException(ErrorCode_UnknownResource);
f5ddbd9239dd New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1632
diff changeset
783 }
f5ddbd9239dd New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1632
diff changeset
784
f5ddbd9239dd New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1632
diff changeset
785 if (attachment.GetCompressionType() == compression)
f5ddbd9239dd New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1632
diff changeset
786 {
f5ddbd9239dd New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1632
diff changeset
787 // Nothing to do
f5ddbd9239dd New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1632
diff changeset
788 return;
f5ddbd9239dd New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1632
diff changeset
789 }
f5ddbd9239dd New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1632
diff changeset
790
f5ddbd9239dd New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1632
diff changeset
791 std::string content;
f5ddbd9239dd New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1632
diff changeset
792
3175
574890d14c92 new metrics: orthanc_store_dicom_duration_ms, orthanc_storage_[create|read|remove]_duration_ms
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3174
diff changeset
793 StorageAccessor accessor(area_, GetMetricsRegistry());
1700
f5ddbd9239dd New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1632
diff changeset
794 accessor.Read(content, attachment);
f5ddbd9239dd New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1632
diff changeset
795
f5ddbd9239dd New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1632
diff changeset
796 FileInfo modified = accessor.Write(content.empty() ? NULL : content.c_str(),
f5ddbd9239dd New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1632
diff changeset
797 content.size(), attachmentType, compression, storeMD5_);
f5ddbd9239dd New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1632
diff changeset
798
f5ddbd9239dd New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1632
diff changeset
799 try
f5ddbd9239dd New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1632
diff changeset
800 {
4627
f7d5372b59b3 handling revisions of attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4623
diff changeset
801 int64_t newRevision; // ignored
4640
66109d24d26e "ETag" headers for metadata and attachments now allow strong comparison (MD5 is included)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4629
diff changeset
802 StoreStatus status = index_.AddAttachment(newRevision, modified, resourceId,
66109d24d26e "ETag" headers for metadata and attachments now allow strong comparison (MD5 is included)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4629
diff changeset
803 true, revision, modified.GetUncompressedMD5());
1700
f5ddbd9239dd New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1632
diff changeset
804 if (status != StoreStatus_Success)
f5ddbd9239dd New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1632
diff changeset
805 {
f5ddbd9239dd New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1632
diff changeset
806 accessor.Remove(modified);
f5ddbd9239dd New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1632
diff changeset
807 throw OrthancException(ErrorCode_Database);
f5ddbd9239dd New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1632
diff changeset
808 }
f5ddbd9239dd New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1632
diff changeset
809 }
f5ddbd9239dd New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1632
diff changeset
810 catch (OrthancException&)
f5ddbd9239dd New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1632
diff changeset
811 {
f5ddbd9239dd New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1632
diff changeset
812 accessor.Remove(modified);
f5ddbd9239dd New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1632
diff changeset
813 throw;
f5ddbd9239dd New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1632
diff changeset
814 }
f5ddbd9239dd New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1632
diff changeset
815 }
f5ddbd9239dd New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1632
diff changeset
816
f5ddbd9239dd New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1632
diff changeset
817
4514
5b929e6b3c36 removal of "dicom-as-json" attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4513
diff changeset
818 static void InjectEmptyPixelData(Json::Value& dicomAsJson)
5b929e6b3c36 removal of "dicom-as-json" attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4513
diff changeset
819 {
5b929e6b3c36 removal of "dicom-as-json" attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4513
diff changeset
820 // This is for backward compatibility with Orthanc <= 1.9.0
5b929e6b3c36 removal of "dicom-as-json" attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4513
diff changeset
821 Json::Value pixelData = Json::objectValue;
5b929e6b3c36 removal of "dicom-as-json" attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4513
diff changeset
822 pixelData["Name"] = "PixelData";
5b929e6b3c36 removal of "dicom-as-json" attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4513
diff changeset
823 pixelData["Type"] = "Null";
5b929e6b3c36 removal of "dicom-as-json" attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4513
diff changeset
824 pixelData["Value"] = Json::nullValue;
5b929e6b3c36 removal of "dicom-as-json" attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4513
diff changeset
825
5b929e6b3c36 removal of "dicom-as-json" attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4513
diff changeset
826 dicomAsJson["7fe0,0010"] = pixelData;
5b929e6b3c36 removal of "dicom-as-json" attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4513
diff changeset
827 }
5b929e6b3c36 removal of "dicom-as-json" attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4513
diff changeset
828
5b929e6b3c36 removal of "dicom-as-json" attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4513
diff changeset
829
2124
2b1520efa282 cleaning up
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2122
diff changeset
830 void ServerContext::ReadDicomAsJson(Json::Value& result,
2409
e4045b3c9772 ignore-length argument if retrieving DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2382
diff changeset
831 const std::string& instancePublicId,
e4045b3c9772 ignore-length argument if retrieving DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2382
diff changeset
832 const std::set<DicomTag>& ignoreTagLength)
226
8a26a8e85edf refactoring to read files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 224
diff changeset
833 {
4514
5b929e6b3c36 removal of "dicom-as-json" attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4513
diff changeset
834 /**
5b929e6b3c36 removal of "dicom-as-json" attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4513
diff changeset
835 * CASE 1: The DICOM file, truncated at pixel data, is available
5b929e6b3c36 removal of "dicom-as-json" attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4513
diff changeset
836 * as an attachment (it was created either because the storage
4666
Alain Mazy <am@osimis.io>
parents: 4640
diff changeset
837 * area does not support range reads, or if "StorageCompression"
4514
5b929e6b3c36 removal of "dicom-as-json" attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4513
diff changeset
838 * is enabled). Simply return this attachment.
5b929e6b3c36 removal of "dicom-as-json" attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4513
diff changeset
839 **/
5b929e6b3c36 removal of "dicom-as-json" attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4513
diff changeset
840
5b929e6b3c36 removal of "dicom-as-json" attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4513
diff changeset
841 FileInfo attachment;
4629
88e892e25a51 cppcheck
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4627
diff changeset
842 int64_t revision; // Ignored
4514
5b929e6b3c36 removal of "dicom-as-json" attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4513
diff changeset
843
4627
f7d5372b59b3 handling revisions of attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4623
diff changeset
844 if (index_.LookupAttachment(attachment, revision, instancePublicId, FileContentType_DicomUntilPixelData))
2409
e4045b3c9772 ignore-length argument if retrieving DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2382
diff changeset
845 {
4514
5b929e6b3c36 removal of "dicom-as-json" attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4513
diff changeset
846 std::string dicom;
4513
1f455b86b054 simplification in ServerContext
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4511
diff changeset
847
1f455b86b054 simplification in ServerContext
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4511
diff changeset
848 {
4514
5b929e6b3c36 removal of "dicom-as-json" attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4513
diff changeset
849 StorageAccessor accessor(area_, GetMetricsRegistry());
5b929e6b3c36 removal of "dicom-as-json" attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4513
diff changeset
850 accessor.Read(dicom, attachment);
5b929e6b3c36 removal of "dicom-as-json" attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4513
diff changeset
851 }
5b929e6b3c36 removal of "dicom-as-json" attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4513
diff changeset
852
5b929e6b3c36 removal of "dicom-as-json" attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4513
diff changeset
853 ParsedDicomFile parsed(dicom);
5b929e6b3c36 removal of "dicom-as-json" attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4513
diff changeset
854 OrthancConfiguration::DefaultDicomDatasetToJson(result, parsed, ignoreTagLength);
5b929e6b3c36 removal of "dicom-as-json" attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4513
diff changeset
855 InjectEmptyPixelData(result);
5b929e6b3c36 removal of "dicom-as-json" attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4513
diff changeset
856 }
5b929e6b3c36 removal of "dicom-as-json" attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4513
diff changeset
857 else
5b929e6b3c36 removal of "dicom-as-json" attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4513
diff changeset
858 {
5b929e6b3c36 removal of "dicom-as-json" attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4513
diff changeset
859 /**
5b929e6b3c36 removal of "dicom-as-json" attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4513
diff changeset
860 * The truncated DICOM file is not stored as a standalone
5b929e6b3c36 removal of "dicom-as-json" attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4513
diff changeset
861 * attachment. Lookup whether the pixel data offset has already
5b929e6b3c36 removal of "dicom-as-json" attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4513
diff changeset
862 * been computed for this instance.
5b929e6b3c36 removal of "dicom-as-json" attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4513
diff changeset
863 **/
5b929e6b3c36 removal of "dicom-as-json" attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4513
diff changeset
864
5b929e6b3c36 removal of "dicom-as-json" attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4513
diff changeset
865 bool hasPixelDataOffset;
4519
a3c6678aa7b1 cppcheck
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4514
diff changeset
866 uint64_t pixelDataOffset = 0; // dummy initialization
4514
5b929e6b3c36 removal of "dicom-as-json" attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4513
diff changeset
867
5b929e6b3c36 removal of "dicom-as-json" attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4513
diff changeset
868 {
5b929e6b3c36 removal of "dicom-as-json" attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4513
diff changeset
869 std::string s;
4623
95ffe3b6ef7c handling of revisions for metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4607
diff changeset
870 if (index_.LookupMetadata(s, revision, instancePublicId, ResourceType_Instance,
4514
5b929e6b3c36 removal of "dicom-as-json" attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4513
diff changeset
871 MetadataType_Instance_PixelDataOffset))
4513
1f455b86b054 simplification in ServerContext
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4511
diff changeset
872 {
4514
5b929e6b3c36 removal of "dicom-as-json" attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4513
diff changeset
873 hasPixelDataOffset = false;
5b929e6b3c36 removal of "dicom-as-json" attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4513
diff changeset
874
5b929e6b3c36 removal of "dicom-as-json" attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4513
diff changeset
875 if (!s.empty())
5b929e6b3c36 removal of "dicom-as-json" attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4513
diff changeset
876 {
5b929e6b3c36 removal of "dicom-as-json" attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4513
diff changeset
877 try
5b929e6b3c36 removal of "dicom-as-json" attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4513
diff changeset
878 {
5b929e6b3c36 removal of "dicom-as-json" attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4513
diff changeset
879 pixelDataOffset = boost::lexical_cast<uint64_t>(s);
5b929e6b3c36 removal of "dicom-as-json" attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4513
diff changeset
880 hasPixelDataOffset = true;
5b929e6b3c36 removal of "dicom-as-json" attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4513
diff changeset
881 }
5b929e6b3c36 removal of "dicom-as-json" attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4513
diff changeset
882 catch (boost::bad_lexical_cast&)
5b929e6b3c36 removal of "dicom-as-json" attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4513
diff changeset
883 {
5b929e6b3c36 removal of "dicom-as-json" attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4513
diff changeset
884 }
5b929e6b3c36 removal of "dicom-as-json" attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4513
diff changeset
885 }
5b929e6b3c36 removal of "dicom-as-json" attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4513
diff changeset
886
5b929e6b3c36 removal of "dicom-as-json" attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4513
diff changeset
887 if (!hasPixelDataOffset)
5b929e6b3c36 removal of "dicom-as-json" attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4513
diff changeset
888 {
5b929e6b3c36 removal of "dicom-as-json" attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4513
diff changeset
889 LOG(ERROR) << "Metadata \"PixelDataOffset\" is corrupted for instance: " << instancePublicId;
5b929e6b3c36 removal of "dicom-as-json" attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4513
diff changeset
890 }
4513
1f455b86b054 simplification in ServerContext
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4511
diff changeset
891 }
1f455b86b054 simplification in ServerContext
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4511
diff changeset
892 else
1f455b86b054 simplification in ServerContext
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4511
diff changeset
893 {
4514
5b929e6b3c36 removal of "dicom-as-json" attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4513
diff changeset
894 // This instance was created by a version of Orthanc <= 1.9.0
5b929e6b3c36 removal of "dicom-as-json" attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4513
diff changeset
895 hasPixelDataOffset = false;
5b929e6b3c36 removal of "dicom-as-json" attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4513
diff changeset
896 }
5b929e6b3c36 removal of "dicom-as-json" attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4513
diff changeset
897 }
5b929e6b3c36 removal of "dicom-as-json" attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4513
diff changeset
898
5b929e6b3c36 removal of "dicom-as-json" attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4513
diff changeset
899
5b929e6b3c36 removal of "dicom-as-json" attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4513
diff changeset
900 if (hasPixelDataOffset &&
5b929e6b3c36 removal of "dicom-as-json" attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4513
diff changeset
901 area_.HasReadRange() &&
4627
f7d5372b59b3 handling revisions of attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4623
diff changeset
902 index_.LookupAttachment(attachment, revision, instancePublicId, FileContentType_Dicom) &&
4514
5b929e6b3c36 removal of "dicom-as-json" attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4513
diff changeset
903 attachment.GetCompressionType() == CompressionType_None)
5b929e6b3c36 removal of "dicom-as-json" attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4513
diff changeset
904 {
5b929e6b3c36 removal of "dicom-as-json" attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4513
diff changeset
905 /**
5b929e6b3c36 removal of "dicom-as-json" attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4513
diff changeset
906 * CASE 2: The pixel data offset is known, AND that a range read
5b929e6b3c36 removal of "dicom-as-json" attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4513
diff changeset
907 * can be used to retrieve the truncated DICOM file. Note that
5b929e6b3c36 removal of "dicom-as-json" attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4513
diff changeset
908 * this case cannot be used if "StorageCompression" option is
5b929e6b3c36 removal of "dicom-as-json" attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4513
diff changeset
909 * "true".
5b929e6b3c36 removal of "dicom-as-json" attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4513
diff changeset
910 **/
5b929e6b3c36 removal of "dicom-as-json" attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4513
diff changeset
911
4519
a3c6678aa7b1 cppcheck
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4514
diff changeset
912 std::unique_ptr<IMemoryBuffer> dicom;
a3c6678aa7b1 cppcheck
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4514
diff changeset
913 {
a3c6678aa7b1 cppcheck
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4514
diff changeset
914 MetricsRegistry::Timer timer(GetMetricsRegistry(), "orthanc_storage_read_range_duration_ms");
a3c6678aa7b1 cppcheck
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4514
diff changeset
915 dicom.reset(area_.ReadRange(attachment.GetUuid(), FileContentType_Dicom, 0, pixelDataOffset));
a3c6678aa7b1 cppcheck
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4514
diff changeset
916 }
4513
1f455b86b054 simplification in ServerContext
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4511
diff changeset
917
4514
5b929e6b3c36 removal of "dicom-as-json" attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4513
diff changeset
918 if (dicom.get() == NULL)
5b929e6b3c36 removal of "dicom-as-json" attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4513
diff changeset
919 {
5b929e6b3c36 removal of "dicom-as-json" attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4513
diff changeset
920 throw OrthancException(ErrorCode_InternalError);
5b929e6b3c36 removal of "dicom-as-json" attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4513
diff changeset
921 }
5b929e6b3c36 removal of "dicom-as-json" attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4513
diff changeset
922 else
5b929e6b3c36 removal of "dicom-as-json" attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4513
diff changeset
923 {
5b929e6b3c36 removal of "dicom-as-json" attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4513
diff changeset
924 assert(dicom->GetSize() == pixelDataOffset);
5b929e6b3c36 removal of "dicom-as-json" attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4513
diff changeset
925 ParsedDicomFile parsed(dicom->GetData(), dicom->GetSize());
5b929e6b3c36 removal of "dicom-as-json" attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4513
diff changeset
926 OrthancConfiguration::DefaultDicomDatasetToJson(result, parsed, ignoreTagLength);
5b929e6b3c36 removal of "dicom-as-json" attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4513
diff changeset
927 InjectEmptyPixelData(result);
5b929e6b3c36 removal of "dicom-as-json" attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4513
diff changeset
928 }
5b929e6b3c36 removal of "dicom-as-json" attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4513
diff changeset
929 }
5b929e6b3c36 removal of "dicom-as-json" attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4513
diff changeset
930 else if (ignoreTagLength.empty() &&
4627
f7d5372b59b3 handling revisions of attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4623
diff changeset
931 index_.LookupAttachment(attachment, revision, instancePublicId, FileContentType_DicomAsJson))
4514
5b929e6b3c36 removal of "dicom-as-json" attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4513
diff changeset
932 {
5b929e6b3c36 removal of "dicom-as-json" attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4513
diff changeset
933 /**
5b929e6b3c36 removal of "dicom-as-json" attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4513
diff changeset
934 * CASE 3: This instance was created using Orthanc <=
5b929e6b3c36 removal of "dicom-as-json" attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4513
diff changeset
935 * 1.9.0. Reuse the old "DICOM-as-JSON" attachment if available.
5b929e6b3c36 removal of "dicom-as-json" attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4513
diff changeset
936 * This is for backward compatibility: A call to
5b929e6b3c36 removal of "dicom-as-json" attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4513
diff changeset
937 * "/tools/invalidate-tags" or to one flavors of
5b929e6b3c36 removal of "dicom-as-json" attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4513
diff changeset
938 * "/.../.../reconstruct" will disable this case.
5b929e6b3c36 removal of "dicom-as-json" attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4513
diff changeset
939 **/
5b929e6b3c36 removal of "dicom-as-json" attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4513
diff changeset
940
5b929e6b3c36 removal of "dicom-as-json" attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4513
diff changeset
941 std::string dicomAsJson;
4513
1f455b86b054 simplification in ServerContext
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4511
diff changeset
942
4514
5b929e6b3c36 removal of "dicom-as-json" attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4513
diff changeset
943 {
5b929e6b3c36 removal of "dicom-as-json" attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4513
diff changeset
944 StorageAccessor accessor(area_, GetMetricsRegistry());
5b929e6b3c36 removal of "dicom-as-json" attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4513
diff changeset
945 accessor.Read(dicomAsJson, attachment);
5b929e6b3c36 removal of "dicom-as-json" attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4513
diff changeset
946 }
4513
1f455b86b054 simplification in ServerContext
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4511
diff changeset
947
4514
5b929e6b3c36 removal of "dicom-as-json" attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4513
diff changeset
948 if (!Toolbox::ReadJson(result, dicomAsJson))
5b929e6b3c36 removal of "dicom-as-json" attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4513
diff changeset
949 {
5b929e6b3c36 removal of "dicom-as-json" attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4513
diff changeset
950 throw OrthancException(ErrorCode_CorruptedFile,
5b929e6b3c36 removal of "dicom-as-json" attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4513
diff changeset
951 "Corrupted DICOM-as-JSON attachment of instance: " + instancePublicId);
5b929e6b3c36 removal of "dicom-as-json" attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4513
diff changeset
952 }
5b929e6b3c36 removal of "dicom-as-json" attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4513
diff changeset
953 }
5b929e6b3c36 removal of "dicom-as-json" attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4513
diff changeset
954 else
5b929e6b3c36 removal of "dicom-as-json" attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4513
diff changeset
955 {
5b929e6b3c36 removal of "dicom-as-json" attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4513
diff changeset
956 /**
5b929e6b3c36 removal of "dicom-as-json" attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4513
diff changeset
957 * CASE 4: Neither the truncated DICOM file is accessible, nor
5b929e6b3c36 removal of "dicom-as-json" attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4513
diff changeset
958 * the DICOM-as-JSON summary. We have to retrieve the full DICOM
5b929e6b3c36 removal of "dicom-as-json" attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4513
diff changeset
959 * file from the storage area.
5b929e6b3c36 removal of "dicom-as-json" attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4513
diff changeset
960 **/
5b929e6b3c36 removal of "dicom-as-json" attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4513
diff changeset
961
5b929e6b3c36 removal of "dicom-as-json" attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4513
diff changeset
962 std::string dicom;
5b929e6b3c36 removal of "dicom-as-json" attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4513
diff changeset
963 ReadDicom(dicom, instancePublicId);
4513
1f455b86b054 simplification in ServerContext
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4511
diff changeset
964
4514
5b929e6b3c36 removal of "dicom-as-json" attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4513
diff changeset
965 ParsedDicomFile parsed(dicom);
5b929e6b3c36 removal of "dicom-as-json" attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4513
diff changeset
966 OrthancConfiguration::DefaultDicomDatasetToJson(result, parsed, ignoreTagLength);
5b929e6b3c36 removal of "dicom-as-json" attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4513
diff changeset
967
5b929e6b3c36 removal of "dicom-as-json" attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4513
diff changeset
968 if (!hasPixelDataOffset)
5b929e6b3c36 removal of "dicom-as-json" attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4513
diff changeset
969 {
5b929e6b3c36 removal of "dicom-as-json" attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4513
diff changeset
970 /**
5b929e6b3c36 removal of "dicom-as-json" attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4513
diff changeset
971 * The pixel data offset was never computed for this
5b929e6b3c36 removal of "dicom-as-json" attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4513
diff changeset
972 * instance, which indicates that it was created using
5b929e6b3c36 removal of "dicom-as-json" attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4513
diff changeset
973 * Orthanc <= 1.9.0, or that calls to
5b929e6b3c36 removal of "dicom-as-json" attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4513
diff changeset
974 * "LookupPixelDataOffset()" from earlier versions of
5b929e6b3c36 removal of "dicom-as-json" attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4513
diff changeset
975 * Orthanc have failed. Try again this precomputation now
5b929e6b3c36 removal of "dicom-as-json" attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4513
diff changeset
976 * for future calls.
5b929e6b3c36 removal of "dicom-as-json" attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4513
diff changeset
977 **/
5b929e6b3c36 removal of "dicom-as-json" attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4513
diff changeset
978 if (DicomStreamReader::LookupPixelDataOffset(pixelDataOffset, dicom) &&
5b929e6b3c36 removal of "dicom-as-json" attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4513
diff changeset
979 pixelDataOffset < dicom.size())
4513
1f455b86b054 simplification in ServerContext
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4511
diff changeset
980 {
4623
95ffe3b6ef7c handling of revisions for metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4607
diff changeset
981 index_.OverwriteMetadata(instancePublicId, MetadataType_Instance_PixelDataOffset,
95ffe3b6ef7c handling of revisions for metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4607
diff changeset
982 boost::lexical_cast<std::string>(pixelDataOffset));
4514
5b929e6b3c36 removal of "dicom-as-json" attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4513
diff changeset
983
5b929e6b3c36 removal of "dicom-as-json" attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4513
diff changeset
984 if (!area_.HasReadRange() ||
4519
a3c6678aa7b1 cppcheck
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4514
diff changeset
985 compressionEnabled_)
4514
5b929e6b3c36 removal of "dicom-as-json" attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4513
diff changeset
986 {
4627
f7d5372b59b3 handling revisions of attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4623
diff changeset
987 int64_t newRevision;
f7d5372b59b3 handling revisions of attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4623
diff changeset
988 AddAttachment(newRevision, instancePublicId, FileContentType_DicomUntilPixelData,
f7d5372b59b3 handling revisions of attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4623
diff changeset
989 dicom.empty() ? NULL: dicom.c_str(), pixelDataOffset,
4640
66109d24d26e "ETag" headers for metadata and attachments now allow strong comparison (MD5 is included)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4629
diff changeset
990 false /* no old revision */, -1 /* dummy revision */, "" /* dummy MD5 */);
4514
5b929e6b3c36 removal of "dicom-as-json" attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4513
diff changeset
991 }
4513
1f455b86b054 simplification in ServerContext
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4511
diff changeset
992 }
1f455b86b054 simplification in ServerContext
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4511
diff changeset
993 }
1f455b86b054 simplification in ServerContext
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4511
diff changeset
994 }
226
8a26a8e85edf refactoring to read files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 224
diff changeset
995 }
8a26a8e85edf refactoring to read files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 224
diff changeset
996 }
227
209ca3f6db62 dicom-scu from rest
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 226
diff changeset
997
209ca3f6db62 dicom-scu from rest
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 226
diff changeset
998
4511
1ec156a0da38 ServerContext::ReadDicomUntilPixelData()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4509
diff changeset
999 void ServerContext::ReadDicomAsJson(Json::Value& result,
1ec156a0da38 ServerContext::ReadDicomUntilPixelData()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4509
diff changeset
1000 const std::string& instancePublicId)
1ec156a0da38 ServerContext::ReadDicomUntilPixelData()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4509
diff changeset
1001 {
1ec156a0da38 ServerContext::ReadDicomUntilPixelData()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4509
diff changeset
1002 std::set<DicomTag> ignoreTagLength;
1ec156a0da38 ServerContext::ReadDicomUntilPixelData()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4509
diff changeset
1003 ReadDicomAsJson(result, instancePublicId, ignoreTagLength);
1ec156a0da38 ServerContext::ReadDicomUntilPixelData()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4509
diff changeset
1004 }
1ec156a0da38 ServerContext::ReadDicomUntilPixelData()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4509
diff changeset
1005
1ec156a0da38 ServerContext::ReadDicomUntilPixelData()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4509
diff changeset
1006
4509
98b7b9d21d83 removed ServerContext::ReadAttachment()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4508
diff changeset
1007 void ServerContext::ReadDicom(std::string& dicom,
98b7b9d21d83 removed ServerContext::ReadAttachment()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4508
diff changeset
1008 const std::string& instancePublicId)
98b7b9d21d83 removed ServerContext::ReadAttachment()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4508
diff changeset
1009 {
4627
f7d5372b59b3 handling revisions of attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4623
diff changeset
1010 int64_t revision;
f7d5372b59b3 handling revisions of attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4623
diff changeset
1011 ReadAttachment(dicom, revision, instancePublicId, FileContentType_Dicom, true /* uncompress */);
4509
98b7b9d21d83 removed ServerContext::ReadAttachment()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4508
diff changeset
1012 }
98b7b9d21d83 removed ServerContext::ReadAttachment()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4508
diff changeset
1013
98b7b9d21d83 removed ServerContext::ReadAttachment()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4508
diff changeset
1014
4511
1ec156a0da38 ServerContext::ReadDicomUntilPixelData()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4509
diff changeset
1015 bool ServerContext::ReadDicomUntilPixelData(std::string& dicom,
1ec156a0da38 ServerContext::ReadDicomUntilPixelData()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4509
diff changeset
1016 const std::string& instancePublicId)
1ec156a0da38 ServerContext::ReadDicomUntilPixelData()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4509
diff changeset
1017 {
1ec156a0da38 ServerContext::ReadDicomUntilPixelData()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4509
diff changeset
1018 if (!area_.HasReadRange())
1ec156a0da38 ServerContext::ReadDicomUntilPixelData()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4509
diff changeset
1019 {
1ec156a0da38 ServerContext::ReadDicomUntilPixelData()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4509
diff changeset
1020 return false;
1ec156a0da38 ServerContext::ReadDicomUntilPixelData()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4509
diff changeset
1021 }
1ec156a0da38 ServerContext::ReadDicomUntilPixelData()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4509
diff changeset
1022
1ec156a0da38 ServerContext::ReadDicomUntilPixelData()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4509
diff changeset
1023 FileInfo attachment;
4627
f7d5372b59b3 handling revisions of attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4623
diff changeset
1024 int64_t revision; // Ignored
f7d5372b59b3 handling revisions of attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4623
diff changeset
1025 if (!index_.LookupAttachment(attachment, revision, instancePublicId, FileContentType_Dicom))
4511
1ec156a0da38 ServerContext::ReadDicomUntilPixelData()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4509
diff changeset
1026 {
1ec156a0da38 ServerContext::ReadDicomUntilPixelData()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4509
diff changeset
1027 throw OrthancException(ErrorCode_InternalError,
1ec156a0da38 ServerContext::ReadDicomUntilPixelData()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4509
diff changeset
1028 "Unable to read the DICOM file of instance " + instancePublicId);
1ec156a0da38 ServerContext::ReadDicomUntilPixelData()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4509
diff changeset
1029 }
1ec156a0da38 ServerContext::ReadDicomUntilPixelData()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4509
diff changeset
1030
1ec156a0da38 ServerContext::ReadDicomUntilPixelData()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4509
diff changeset
1031 std::string s;
1ec156a0da38 ServerContext::ReadDicomUntilPixelData()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4509
diff changeset
1032
1ec156a0da38 ServerContext::ReadDicomUntilPixelData()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4509
diff changeset
1033 if (attachment.GetCompressionType() == CompressionType_None &&
4623
95ffe3b6ef7c handling of revisions for metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4607
diff changeset
1034 index_.LookupMetadata(s, revision, instancePublicId, ResourceType_Instance,
4511
1ec156a0da38 ServerContext::ReadDicomUntilPixelData()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4509
diff changeset
1035 MetadataType_Instance_PixelDataOffset) &&
1ec156a0da38 ServerContext::ReadDicomUntilPixelData()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4509
diff changeset
1036 !s.empty())
1ec156a0da38 ServerContext::ReadDicomUntilPixelData()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4509
diff changeset
1037 {
1ec156a0da38 ServerContext::ReadDicomUntilPixelData()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4509
diff changeset
1038 try
1ec156a0da38 ServerContext::ReadDicomUntilPixelData()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4509
diff changeset
1039 {
1ec156a0da38 ServerContext::ReadDicomUntilPixelData()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4509
diff changeset
1040 uint64_t pixelDataOffset = boost::lexical_cast<uint64_t>(s);
1ec156a0da38 ServerContext::ReadDicomUntilPixelData()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4509
diff changeset
1041
1ec156a0da38 ServerContext::ReadDicomUntilPixelData()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4509
diff changeset
1042 std::unique_ptr<IMemoryBuffer> buffer(
1ec156a0da38 ServerContext::ReadDicomUntilPixelData()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4509
diff changeset
1043 area_.ReadRange(attachment.GetUuid(), attachment.GetContentType(), 0, pixelDataOffset));
1ec156a0da38 ServerContext::ReadDicomUntilPixelData()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4509
diff changeset
1044 buffer->MoveToString(dicom);
1ec156a0da38 ServerContext::ReadDicomUntilPixelData()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4509
diff changeset
1045 return true; // Success
1ec156a0da38 ServerContext::ReadDicomUntilPixelData()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4509
diff changeset
1046 }
1ec156a0da38 ServerContext::ReadDicomUntilPixelData()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4509
diff changeset
1047 catch (boost::bad_lexical_cast&)
1ec156a0da38 ServerContext::ReadDicomUntilPixelData()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4509
diff changeset
1048 {
1ec156a0da38 ServerContext::ReadDicomUntilPixelData()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4509
diff changeset
1049 LOG(ERROR) << "Metadata \"PixelDataOffset\" is corrupted for instance: " << instancePublicId;
1ec156a0da38 ServerContext::ReadDicomUntilPixelData()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4509
diff changeset
1050 }
1ec156a0da38 ServerContext::ReadDicomUntilPixelData()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4509
diff changeset
1051 }
1ec156a0da38 ServerContext::ReadDicomUntilPixelData()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4509
diff changeset
1052
1ec156a0da38 ServerContext::ReadDicomUntilPixelData()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4509
diff changeset
1053 return false;
1ec156a0da38 ServerContext::ReadDicomUntilPixelData()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4509
diff changeset
1054 }
1ec156a0da38 ServerContext::ReadDicomUntilPixelData()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4509
diff changeset
1055
1ec156a0da38 ServerContext::ReadDicomUntilPixelData()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4509
diff changeset
1056
2128
9329ba17a069 Possibility to DELETE "dicom-as-json" attachments to reconstruct them
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2127
diff changeset
1057 void ServerContext::ReadAttachment(std::string& result,
4627
f7d5372b59b3 handling revisions of attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4623
diff changeset
1058 int64_t& revision,
2128
9329ba17a069 Possibility to DELETE "dicom-as-json" attachments to reconstruct them
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2127
diff changeset
1059 const std::string& instancePublicId,
9329ba17a069 Possibility to DELETE "dicom-as-json" attachments to reconstruct them
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2127
diff changeset
1060 FileContentType content,
9329ba17a069 Possibility to DELETE "dicom-as-json" attachments to reconstruct them
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2127
diff changeset
1061 bool uncompressIfNeeded)
227
209ca3f6db62 dicom-scu from rest
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 226
diff changeset
1062 {
232
5368bbe813cf refactoring of attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 227
diff changeset
1063 FileInfo attachment;
4627
f7d5372b59b3 handling revisions of attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4623
diff changeset
1064 if (!index_.LookupAttachment(attachment, revision, instancePublicId, content))
227
209ca3f6db62 dicom-scu from rest
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 226
diff changeset
1065 {
2956
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2950
diff changeset
1066 throw OrthancException(ErrorCode_InternalError,
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2950
diff changeset
1067 "Unable to read attachment " + EnumerationToString(content) +
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2950
diff changeset
1068 " of instance " + instancePublicId);
227
209ca3f6db62 dicom-scu from rest
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 226
diff changeset
1069 }
1550
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1549
diff changeset
1070
3175
574890d14c92 new metrics: orthanc_store_dicom_duration_ms, orthanc_storage_[create|read|remove]_duration_ms
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3174
diff changeset
1071 assert(attachment.GetContentType() == content);
574890d14c92 new metrics: orthanc_store_dicom_duration_ms, orthanc_storage_[create|read|remove]_duration_ms
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3174
diff changeset
1072
1550
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1549
diff changeset
1073 {
3175
574890d14c92 new metrics: orthanc_store_dicom_duration_ms, orthanc_storage_[create|read|remove]_duration_ms
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3174
diff changeset
1074 StorageAccessor accessor(area_, GetMetricsRegistry());
4509
98b7b9d21d83 removed ServerContext::ReadAttachment()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4508
diff changeset
1075
98b7b9d21d83 removed ServerContext::ReadAttachment()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4508
diff changeset
1076 if (uncompressIfNeeded)
98b7b9d21d83 removed ServerContext::ReadAttachment()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4508
diff changeset
1077 {
98b7b9d21d83 removed ServerContext::ReadAttachment()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4508
diff changeset
1078 accessor.Read(result, attachment);
98b7b9d21d83 removed ServerContext::ReadAttachment()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4508
diff changeset
1079 }
98b7b9d21d83 removed ServerContext::ReadAttachment()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4508
diff changeset
1080 else
98b7b9d21d83 removed ServerContext::ReadAttachment()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4508
diff changeset
1081 {
98b7b9d21d83 removed ServerContext::ReadAttachment()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4508
diff changeset
1082 // Do not uncompress the content of the storage area, return the
98b7b9d21d83 removed ServerContext::ReadAttachment()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4508
diff changeset
1083 // raw data
98b7b9d21d83 removed ServerContext::ReadAttachment()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4508
diff changeset
1084 accessor.ReadRaw(result, attachment);
98b7b9d21d83 removed ServerContext::ReadAttachment()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4508
diff changeset
1085 }
1550
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1549
diff changeset
1086 }
227
209ca3f6db62 dicom-scu from rest
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 226
diff changeset
1087 }
285
4031f73fe0e4 access to the raw dicom tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 269
diff changeset
1088
4031f73fe0e4 access to the raw dicom tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 269
diff changeset
1089
4457
789676a8c96a Refactoring and improvements to the cache of DICOM files in ServerContext
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4437
diff changeset
1090 ServerContext::DicomCacheLocker::DicomCacheLocker(ServerContext& context,
789676a8c96a Refactoring and improvements to the cache of DICOM files in ServerContext
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4437
diff changeset
1091 const std::string& instancePublicId) :
789676a8c96a Refactoring and improvements to the cache of DICOM files in ServerContext
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4437
diff changeset
1092 context_(context),
789676a8c96a Refactoring and improvements to the cache of DICOM files in ServerContext
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4437
diff changeset
1093 instancePublicId_(instancePublicId)
285
4031f73fe0e4 access to the raw dicom tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 269
diff changeset
1094 {
4457
789676a8c96a Refactoring and improvements to the cache of DICOM files in ServerContext
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4437
diff changeset
1095 accessor_.reset(new ParsedDicomCache::Accessor(context_.dicomCache_, instancePublicId));
789676a8c96a Refactoring and improvements to the cache of DICOM files in ServerContext
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4437
diff changeset
1096
789676a8c96a Refactoring and improvements to the cache of DICOM files in ServerContext
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4437
diff changeset
1097 if (!accessor_->IsValid())
789676a8c96a Refactoring and improvements to the cache of DICOM files in ServerContext
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4437
diff changeset
1098 {
789676a8c96a Refactoring and improvements to the cache of DICOM files in ServerContext
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4437
diff changeset
1099 accessor_.reset(NULL);
285
4031f73fe0e4 access to the raw dicom tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 269
diff changeset
1100
4457
789676a8c96a Refactoring and improvements to the cache of DICOM files in ServerContext
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4437
diff changeset
1101 // Throttle to avoid loading several large DICOM files simultaneously
789676a8c96a Refactoring and improvements to the cache of DICOM files in ServerContext
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4437
diff changeset
1102 largeDicomLocker_.reset(new Semaphore::Locker(context.largeDicomThrottler_));
789676a8c96a Refactoring and improvements to the cache of DICOM files in ServerContext
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4437
diff changeset
1103
789676a8c96a Refactoring and improvements to the cache of DICOM files in ServerContext
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4437
diff changeset
1104 std::string content;
789676a8c96a Refactoring and improvements to the cache of DICOM files in ServerContext
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4437
diff changeset
1105 context_.ReadDicom(content, instancePublicId);
789676a8c96a Refactoring and improvements to the cache of DICOM files in ServerContext
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4437
diff changeset
1106
789676a8c96a Refactoring and improvements to the cache of DICOM files in ServerContext
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4437
diff changeset
1107 // Release the throttle if loading "small" DICOM files (under
789676a8c96a Refactoring and improvements to the cache of DICOM files in ServerContext
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4437
diff changeset
1108 // 50MB, which is an arbitrary value)
789676a8c96a Refactoring and improvements to the cache of DICOM files in ServerContext
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4437
diff changeset
1109 if (content.size() < 50 * 1024 * 1024)
789676a8c96a Refactoring and improvements to the cache of DICOM files in ServerContext
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4437
diff changeset
1110 {
789676a8c96a Refactoring and improvements to the cache of DICOM files in ServerContext
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4437
diff changeset
1111 largeDicomLocker_.reset(NULL);
789676a8c96a Refactoring and improvements to the cache of DICOM files in ServerContext
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4437
diff changeset
1112 }
789676a8c96a Refactoring and improvements to the cache of DICOM files in ServerContext
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4437
diff changeset
1113
789676a8c96a Refactoring and improvements to the cache of DICOM files in ServerContext
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4437
diff changeset
1114 dicom_.reset(new ParsedDicomFile(content));
789676a8c96a Refactoring and improvements to the cache of DICOM files in ServerContext
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4437
diff changeset
1115 dicomSize_ = content.size();
789676a8c96a Refactoring and improvements to the cache of DICOM files in ServerContext
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4437
diff changeset
1116 }
789676a8c96a Refactoring and improvements to the cache of DICOM files in ServerContext
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4437
diff changeset
1117
789676a8c96a Refactoring and improvements to the cache of DICOM files in ServerContext
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4437
diff changeset
1118 assert(accessor_.get() != NULL ||
789676a8c96a Refactoring and improvements to the cache of DICOM files in ServerContext
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4437
diff changeset
1119 dicom_.get() != NULL);
778
aebf0071020e refactoring of the mutex for the dicom cache
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 774
diff changeset
1120 }
aebf0071020e refactoring of the mutex for the dicom cache
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 774
diff changeset
1121
aebf0071020e refactoring of the mutex for the dicom cache
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 774
diff changeset
1122
aebf0071020e refactoring of the mutex for the dicom cache
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 774
diff changeset
1123 ServerContext::DicomCacheLocker::~DicomCacheLocker()
aebf0071020e refactoring of the mutex for the dicom cache
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 774
diff changeset
1124 {
4457
789676a8c96a Refactoring and improvements to the cache of DICOM files in ServerContext
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4437
diff changeset
1125 if (dicom_.get() != NULL)
789676a8c96a Refactoring and improvements to the cache of DICOM files in ServerContext
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4437
diff changeset
1126 {
789676a8c96a Refactoring and improvements to the cache of DICOM files in ServerContext
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4437
diff changeset
1127 try
789676a8c96a Refactoring and improvements to the cache of DICOM files in ServerContext
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4437
diff changeset
1128 {
789676a8c96a Refactoring and improvements to the cache of DICOM files in ServerContext
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4437
diff changeset
1129 context_.dicomCache_.Acquire(instancePublicId_, dicom_.release(), dicomSize_);
789676a8c96a Refactoring and improvements to the cache of DICOM files in ServerContext
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4437
diff changeset
1130 context_.PublishDicomCacheMetrics();
789676a8c96a Refactoring and improvements to the cache of DICOM files in ServerContext
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4437
diff changeset
1131 }
789676a8c96a Refactoring and improvements to the cache of DICOM files in ServerContext
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4437
diff changeset
1132 catch (OrthancException&)
789676a8c96a Refactoring and improvements to the cache of DICOM files in ServerContext
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4437
diff changeset
1133 {
789676a8c96a Refactoring and improvements to the cache of DICOM files in ServerContext
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4437
diff changeset
1134 }
789676a8c96a Refactoring and improvements to the cache of DICOM files in ServerContext
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4437
diff changeset
1135 }
285
4031f73fe0e4 access to the raw dicom tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 269
diff changeset
1136 }
304
4eea080e6e7a refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 291
diff changeset
1137
4eea080e6e7a refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 291
diff changeset
1138
4457
789676a8c96a Refactoring and improvements to the cache of DICOM files in ServerContext
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4437
diff changeset
1139 ParsedDicomFile& ServerContext::DicomCacheLocker::GetDicom() const
789676a8c96a Refactoring and improvements to the cache of DICOM files in ServerContext
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4437
diff changeset
1140 {
789676a8c96a Refactoring and improvements to the cache of DICOM files in ServerContext
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4437
diff changeset
1141 if (dicom_.get() != NULL)
789676a8c96a Refactoring and improvements to the cache of DICOM files in ServerContext
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4437
diff changeset
1142 {
789676a8c96a Refactoring and improvements to the cache of DICOM files in ServerContext
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4437
diff changeset
1143 return *dicom_;
789676a8c96a Refactoring and improvements to the cache of DICOM files in ServerContext
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4437
diff changeset
1144 }
789676a8c96a Refactoring and improvements to the cache of DICOM files in ServerContext
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4437
diff changeset
1145 else
789676a8c96a Refactoring and improvements to the cache of DICOM files in ServerContext
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4437
diff changeset
1146 {
789676a8c96a Refactoring and improvements to the cache of DICOM files in ServerContext
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4437
diff changeset
1147 assert(accessor_.get() != NULL);
789676a8c96a Refactoring and improvements to the cache of DICOM files in ServerContext
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4437
diff changeset
1148 return accessor_->GetDicom();
789676a8c96a Refactoring and improvements to the cache of DICOM files in ServerContext
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4437
diff changeset
1149 }
789676a8c96a Refactoring and improvements to the cache of DICOM files in ServerContext
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4437
diff changeset
1150 }
789676a8c96a Refactoring and improvements to the cache of DICOM files in ServerContext
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4437
diff changeset
1151
789676a8c96a Refactoring and improvements to the cache of DICOM files in ServerContext
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4437
diff changeset
1152
695
c59bc408fb10 parameter to disable the computation of the MD5
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 689
diff changeset
1153 void ServerContext::SetStoreMD5ForAttachments(bool storeMD5)
c59bc408fb10 parameter to disable the computation of the MD5
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 689
diff changeset
1154 {
c59bc408fb10 parameter to disable the computation of the MD5
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 689
diff changeset
1155 LOG(INFO) << "Storing MD5 for attachments: " << (storeMD5 ? "yes" : "no");
1549
e5e975e9b738 refactoring and simplification of StorageAccessor
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1548
diff changeset
1156 storeMD5_ = storeMD5;
695
c59bc408fb10 parameter to disable the computation of the MD5
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 689
diff changeset
1157 }
c59bc408fb10 parameter to disable the computation of the MD5
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 689
diff changeset
1158
699
2929e17f8447 add attachments to resources
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 697
diff changeset
1159
4627
f7d5372b59b3 handling revisions of attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4623
diff changeset
1160 bool ServerContext::AddAttachment(int64_t& newRevision,
f7d5372b59b3 handling revisions of attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4623
diff changeset
1161 const std::string& resourceId,
699
2929e17f8447 add attachments to resources
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 697
diff changeset
1162 FileContentType attachmentType,
2929e17f8447 add attachments to resources
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 697
diff changeset
1163 const void* data,
4627
f7d5372b59b3 handling revisions of attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4623
diff changeset
1164 size_t size,
f7d5372b59b3 handling revisions of attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4623
diff changeset
1165 bool hasOldRevision,
4640
66109d24d26e "ETag" headers for metadata and attachments now allow strong comparison (MD5 is included)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4629
diff changeset
1166 int64_t oldRevision,
66109d24d26e "ETag" headers for metadata and attachments now allow strong comparison (MD5 is included)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4629
diff changeset
1167 const std::string& oldMD5)
699
2929e17f8447 add attachments to resources
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 697
diff changeset
1168 {
2929e17f8447 add attachments to resources
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 697
diff changeset
1169 LOG(INFO) << "Adding attachment " << EnumerationToString(attachmentType) << " to resource " << resourceId;
2929e17f8447 add attachments to resources
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 697
diff changeset
1170
1549
e5e975e9b738 refactoring and simplification of StorageAccessor
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1548
diff changeset
1171 // TODO Should we use "gzip" instead?
e5e975e9b738 refactoring and simplification of StorageAccessor
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1548
diff changeset
1172 CompressionType compression = (compressionEnabled_ ? CompressionType_ZlibWithSize : CompressionType_None);
699
2929e17f8447 add attachments to resources
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 697
diff changeset
1173
3175
574890d14c92 new metrics: orthanc_store_dicom_duration_ms, orthanc_storage_[create|read|remove]_duration_ms
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3174
diff changeset
1174 StorageAccessor accessor(area_, GetMetricsRegistry());
1549
e5e975e9b738 refactoring and simplification of StorageAccessor
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1548
diff changeset
1175 FileInfo attachment = accessor.Write(data, size, attachmentType, compression, storeMD5_);
699
2929e17f8447 add attachments to resources
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 697
diff changeset
1176
4752
2f35e6b765e5 Fix orphaned attachments if bad revision number is provided
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4694
diff changeset
1177 try
699
2929e17f8447 add attachments to resources
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 697
diff changeset
1178 {
4752
2f35e6b765e5 Fix orphaned attachments if bad revision number is provided
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4694
diff changeset
1179 StoreStatus status = index_.AddAttachment(
2f35e6b765e5 Fix orphaned attachments if bad revision number is provided
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4694
diff changeset
1180 newRevision, attachment, resourceId, hasOldRevision, oldRevision, oldMD5);
2f35e6b765e5 Fix orphaned attachments if bad revision number is provided
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4694
diff changeset
1181 if (status != StoreStatus_Success)
2f35e6b765e5 Fix orphaned attachments if bad revision number is provided
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4694
diff changeset
1182 {
2f35e6b765e5 Fix orphaned attachments if bad revision number is provided
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4694
diff changeset
1183 accessor.Remove(attachment);
2f35e6b765e5 Fix orphaned attachments if bad revision number is provided
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4694
diff changeset
1184 return false;
2f35e6b765e5 Fix orphaned attachments if bad revision number is provided
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4694
diff changeset
1185 }
2f35e6b765e5 Fix orphaned attachments if bad revision number is provided
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4694
diff changeset
1186 else
2f35e6b765e5 Fix orphaned attachments if bad revision number is provided
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4694
diff changeset
1187 {
2f35e6b765e5 Fix orphaned attachments if bad revision number is provided
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4694
diff changeset
1188 return true;
2f35e6b765e5 Fix orphaned attachments if bad revision number is provided
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4694
diff changeset
1189 }
2f35e6b765e5 Fix orphaned attachments if bad revision number is provided
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4694
diff changeset
1190 }
2f35e6b765e5 Fix orphaned attachments if bad revision number is provided
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4694
diff changeset
1191 catch (OrthancException&)
2f35e6b765e5 Fix orphaned attachments if bad revision number is provided
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4694
diff changeset
1192 {
2f35e6b765e5 Fix orphaned attachments if bad revision number is provided
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4694
diff changeset
1193 // Fixed in Orthanc 1.9.6
1549
e5e975e9b738 refactoring and simplification of StorageAccessor
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1548
diff changeset
1194 accessor.Remove(attachment);
4752
2f35e6b765e5 Fix orphaned attachments if bad revision number is provided
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4694
diff changeset
1195 throw;
699
2929e17f8447 add attachments to resources
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 697
diff changeset
1196 }
2929e17f8447 add attachments to resources
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 697
diff changeset
1197 }
1145
0479d02c6778 Plugins can retrieve the path to Orthanc and to its configuration file
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1134
diff changeset
1198
0479d02c6778 Plugins can retrieve the path to Orthanc and to its configuration file
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1134
diff changeset
1199
4694
da1edb7d6332 "/tools/bulk-delete" to delete a group of multiple, unrelated resources at once
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4677
diff changeset
1200 bool ServerContext::DeleteResource(Json::Value& remainingAncestor,
1145
0479d02c6778 Plugins can retrieve the path to Orthanc and to its configuration file
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1134
diff changeset
1201 const std::string& uuid,
0479d02c6778 Plugins can retrieve the path to Orthanc and to its configuration file
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1134
diff changeset
1202 ResourceType expectedType)
0479d02c6778 Plugins can retrieve the path to Orthanc and to its configuration file
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1134
diff changeset
1203 {
2507
99116ed6f38c invalidate DicomCache when deleting instance
amazy
parents: 2447
diff changeset
1204 if (expectedType == ResourceType_Instance)
99116ed6f38c invalidate DicomCache when deleting instance
amazy
parents: 2447
diff changeset
1205 {
99116ed6f38c invalidate DicomCache when deleting instance
amazy
parents: 2447
diff changeset
1206 // remove the file from the DicomCache
99116ed6f38c invalidate DicomCache when deleting instance
amazy
parents: 2447
diff changeset
1207 dicomCache_.Invalidate(uuid);
4457
789676a8c96a Refactoring and improvements to the cache of DICOM files in ServerContext
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4437
diff changeset
1208 PublishDicomCacheMetrics();
2507
99116ed6f38c invalidate DicomCache when deleting instance
amazy
parents: 2447
diff changeset
1209 }
99116ed6f38c invalidate DicomCache when deleting instance
amazy
parents: 2447
diff changeset
1210
4694
da1edb7d6332 "/tools/bulk-delete" to delete a group of multiple, unrelated resources at once
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4677
diff changeset
1211 return index_.DeleteResource(remainingAncestor, uuid, expectedType);
1145
0479d02c6778 Plugins can retrieve the path to Orthanc and to its configuration file
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1134
diff changeset
1212 }
1189
6b9b02a16e99 NewChildInstance change type
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1165
diff changeset
1213
6b9b02a16e99 NewChildInstance change type
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1165
diff changeset
1214
1198
1169528a9a5f refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1189
diff changeset
1215 void ServerContext::SignalChange(const ServerIndexChange& change)
1189
6b9b02a16e99 NewChildInstance change type
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1165
diff changeset
1216 {
4457
789676a8c96a Refactoring and improvements to the cache of DICOM files in ServerContext
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4437
diff changeset
1217 if (change.GetResourceType() == ResourceType_Instance &&
789676a8c96a Refactoring and improvements to the cache of DICOM files in ServerContext
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4437
diff changeset
1218 change.GetChangeType() == ChangeType_Deleted)
789676a8c96a Refactoring and improvements to the cache of DICOM files in ServerContext
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4437
diff changeset
1219 {
789676a8c96a Refactoring and improvements to the cache of DICOM files in ServerContext
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4437
diff changeset
1220 dicomCache_.Invalidate(change.GetPublicId());
789676a8c96a Refactoring and improvements to the cache of DICOM files in ServerContext
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4437
diff changeset
1221 PublishDicomCacheMetrics();
789676a8c96a Refactoring and improvements to the cache of DICOM files in ServerContext
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4437
diff changeset
1222 }
789676a8c96a Refactoring and improvements to the cache of DICOM files in ServerContext
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4437
diff changeset
1223
1436
0a3e3be59094 uncoupling of SignalChange for Lua scripts
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1434
diff changeset
1224 pendingChanges_.Enqueue(change.Clone());
1189
6b9b02a16e99 NewChildInstance change type
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1165
diff changeset
1225 }
1232
f1c01451a8ee Introspection of plugins, Plugins can extend Orthanc Explorer with custom JavaScript
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1198
diff changeset
1226
f1c01451a8ee Introspection of plugins, Plugins can extend Orthanc Explorer with custom JavaScript
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1198
diff changeset
1227
2136
dd609a99d39a uniformization of the macro naming
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2135
diff changeset
1228 #if ORTHANC_ENABLE_PLUGINS == 1
1434
f9cd40166269 refactoring of OrthancPlugins, improvement in ServeFolders
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1433
diff changeset
1229 void ServerContext::SetPlugins(OrthancPlugins& plugins)
1232
f1c01451a8ee Introspection of plugins, Plugins can extend Orthanc Explorer with custom JavaScript
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1198
diff changeset
1230 {
3947
cf6eb4fc6841 fix issue 179: use a shared mutex to avoid deadlock in python plugins
Alain Mazy <alain@mazy.be>
parents: 3945
diff changeset
1231 boost::unique_lock<boost::shared_mutex> lock(listenersMutex_);
1459
040d58493998 security
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1456
diff changeset
1232
1434
f9cd40166269 refactoring of OrthancPlugins, improvement in ServeFolders
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1433
diff changeset
1233 plugins_ = &plugins;
f9cd40166269 refactoring of OrthancPlugins, improvement in ServeFolders
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1433
diff changeset
1234
f9cd40166269 refactoring of OrthancPlugins, improvement in ServeFolders
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1433
diff changeset
1235 // TODO REFACTOR THIS
f9cd40166269 refactoring of OrthancPlugins, improvement in ServeFolders
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1433
diff changeset
1236 listeners_.clear();
2738
3a55b77339ff fix deadlock in Lua scripts
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2716
diff changeset
1237 listeners_.push_back(ServerListener(luaListener_, "Lua"));
1434
f9cd40166269 refactoring of OrthancPlugins, improvement in ServeFolders
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1433
diff changeset
1238 listeners_.push_back(ServerListener(plugins, "plugin"));
1232
f1c01451a8ee Introspection of plugins, Plugins can extend Orthanc Explorer with custom JavaScript
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1198
diff changeset
1239 }
f1c01451a8ee Introspection of plugins, Plugins can extend Orthanc Explorer with custom JavaScript
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1198
diff changeset
1240
f1c01451a8ee Introspection of plugins, Plugins can extend Orthanc Explorer with custom JavaScript
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1198
diff changeset
1241
1434
f9cd40166269 refactoring of OrthancPlugins, improvement in ServeFolders
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1433
diff changeset
1242 void ServerContext::ResetPlugins()
1232
f1c01451a8ee Introspection of plugins, Plugins can extend Orthanc Explorer with custom JavaScript
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1198
diff changeset
1243 {
3947
cf6eb4fc6841 fix issue 179: use a shared mutex to avoid deadlock in python plugins
Alain Mazy <alain@mazy.be>
parents: 3945
diff changeset
1244 boost::unique_lock<boost::shared_mutex> lock(listenersMutex_);
1459
040d58493998 security
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1456
diff changeset
1245
1434
f9cd40166269 refactoring of OrthancPlugins, improvement in ServeFolders
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1433
diff changeset
1246 plugins_ = NULL;
f9cd40166269 refactoring of OrthancPlugins, improvement in ServeFolders
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1433
diff changeset
1247
f9cd40166269 refactoring of OrthancPlugins, improvement in ServeFolders
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1433
diff changeset
1248 // TODO REFACTOR THIS
f9cd40166269 refactoring of OrthancPlugins, improvement in ServeFolders
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1433
diff changeset
1249 listeners_.clear();
2738
3a55b77339ff fix deadlock in Lua scripts
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2716
diff changeset
1250 listeners_.push_back(ServerListener(luaListener_, "Lua"));
1232
f1c01451a8ee Introspection of plugins, Plugins can extend Orthanc Explorer with custom JavaScript
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1198
diff changeset
1251 }
f1c01451a8ee Introspection of plugins, Plugins can extend Orthanc Explorer with custom JavaScript
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1198
diff changeset
1252
f1c01451a8ee Introspection of plugins, Plugins can extend Orthanc Explorer with custom JavaScript
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1198
diff changeset
1253
1434
f9cd40166269 refactoring of OrthancPlugins, improvement in ServeFolders
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1433
diff changeset
1254 const OrthancPlugins& ServerContext::GetPlugins() const
1232
f1c01451a8ee Introspection of plugins, Plugins can extend Orthanc Explorer with custom JavaScript
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1198
diff changeset
1255 {
f1c01451a8ee Introspection of plugins, Plugins can extend Orthanc Explorer with custom JavaScript
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1198
diff changeset
1256 if (HasPlugins())
f1c01451a8ee Introspection of plugins, Plugins can extend Orthanc Explorer with custom JavaScript
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1198
diff changeset
1257 {
f1c01451a8ee Introspection of plugins, Plugins can extend Orthanc Explorer with custom JavaScript
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1198
diff changeset
1258 return *plugins_;
f1c01451a8ee Introspection of plugins, Plugins can extend Orthanc Explorer with custom JavaScript
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1198
diff changeset
1259 }
f1c01451a8ee Introspection of plugins, Plugins can extend Orthanc Explorer with custom JavaScript
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1198
diff changeset
1260 else
f1c01451a8ee Introspection of plugins, Plugins can extend Orthanc Explorer with custom JavaScript
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1198
diff changeset
1261 {
f1c01451a8ee Introspection of plugins, Plugins can extend Orthanc Explorer with custom JavaScript
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1198
diff changeset
1262 throw OrthancException(ErrorCode_InternalError);
f1c01451a8ee Introspection of plugins, Plugins can extend Orthanc Explorer with custom JavaScript
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1198
diff changeset
1263 }
f1c01451a8ee Introspection of plugins, Plugins can extend Orthanc Explorer with custom JavaScript
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1198
diff changeset
1264 }
1632
eb8fbcf008b5 fix build with plugins disabled
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1582
diff changeset
1265
1741
06addfcd1d4c OrthancStarted and OrthancStopped events in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1701
diff changeset
1266 OrthancPlugins& ServerContext::GetPlugins()
06addfcd1d4c OrthancStarted and OrthancStopped events in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1701
diff changeset
1267 {
06addfcd1d4c OrthancStarted and OrthancStopped events in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1701
diff changeset
1268 if (HasPlugins())
06addfcd1d4c OrthancStarted and OrthancStopped events in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1701
diff changeset
1269 {
06addfcd1d4c OrthancStarted and OrthancStopped events in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1701
diff changeset
1270 return *plugins_;
06addfcd1d4c OrthancStarted and OrthancStopped events in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1701
diff changeset
1271 }
06addfcd1d4c OrthancStarted and OrthancStopped events in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1701
diff changeset
1272 else
06addfcd1d4c OrthancStarted and OrthancStopped events in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1701
diff changeset
1273 {
06addfcd1d4c OrthancStarted and OrthancStopped events in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1701
diff changeset
1274 throw OrthancException(ErrorCode_InternalError);
06addfcd1d4c OrthancStarted and OrthancStopped events in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1701
diff changeset
1275 }
06addfcd1d4c OrthancStarted and OrthancStopped events in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1701
diff changeset
1276 }
06addfcd1d4c OrthancStarted and OrthancStopped events in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1701
diff changeset
1277
1632
eb8fbcf008b5 fix build with plugins disabled
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1582
diff changeset
1278 #endif
eb8fbcf008b5 fix build with plugins disabled
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1582
diff changeset
1279
eb8fbcf008b5 fix build with plugins disabled
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1582
diff changeset
1280
eb8fbcf008b5 fix build with plugins disabled
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1582
diff changeset
1281 bool ServerContext::HasPlugins() const
eb8fbcf008b5 fix build with plugins disabled
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1582
diff changeset
1282 {
2136
dd609a99d39a uniformization of the macro naming
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2135
diff changeset
1283 #if ORTHANC_ENABLE_PLUGINS == 1
1632
eb8fbcf008b5 fix build with plugins disabled
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1582
diff changeset
1284 return (plugins_ != NULL);
eb8fbcf008b5 fix build with plugins disabled
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1582
diff changeset
1285 #else
eb8fbcf008b5 fix build with plugins disabled
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1582
diff changeset
1286 return false;
eb8fbcf008b5 fix build with plugins disabled
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1582
diff changeset
1287 #endif
eb8fbcf008b5 fix build with plugins disabled
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1582
diff changeset
1288 }
1757
98abb8d7f905 ServerContext::Apply lookup
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1741
diff changeset
1289
98abb8d7f905 ServerContext::Apply lookup
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1741
diff changeset
1290
4196
37310bb1cd30 Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4143
diff changeset
1291 void ServerContext::ApplyInternal(ILookupVisitor& visitor,
37310bb1cd30 Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4143
diff changeset
1292 const DatabaseLookup& lookup,
37310bb1cd30 Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4143
diff changeset
1293 ResourceType queryLevel,
37310bb1cd30 Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4143
diff changeset
1294 size_t since,
37310bb1cd30 Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4143
diff changeset
1295 size_t limit)
37310bb1cd30 Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4143
diff changeset
1296 {
3679
6358923d3ced C-FIND: forbid wildcard matching on some VRs, ignore main tags below the queried level
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3677
diff changeset
1297 unsigned int databaseLimit = (queryLevel == ResourceType_Instance ?
6358923d3ced C-FIND: forbid wildcard matching on some VRs, ignore main tags below the queried level
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3677
diff changeset
1298 limitFindInstances_ : limitFindResults_);
3015
abe49ca61cd5 On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3012
diff changeset
1299
1757
98abb8d7f905 ServerContext::Apply lookup
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1741
diff changeset
1300 std::vector<std::string> resources, instances;
3015
abe49ca61cd5 On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3012
diff changeset
1301
3204
8792867b739a fix incorrect "too many results"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3175
diff changeset
1302 {
8792867b739a fix incorrect "too many results"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3175
diff changeset
1303 const size_t lookupLimit = (databaseLimit == 0 ? 0 : databaseLimit + 1);
8792867b739a fix incorrect "too many results"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3175
diff changeset
1304 GetIndex().ApplyLookupResources(resources, &instances, lookup, queryLevel, lookupLimit);
8792867b739a fix incorrect "too many results"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3175
diff changeset
1305 }
3025
039a9d262d64 preparing to speed up find in databases
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3021
diff changeset
1306
3033
5da6d1063d8f effectively replacing LookupResource by DatabaseLookup in searches
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3031
diff changeset
1307 bool complete = (databaseLimit == 0 ||
3204
8792867b739a fix incorrect "too many results"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3175
diff changeset
1308 resources.size() <= databaseLimit);
1757
98abb8d7f905 ServerContext::Apply lookup
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1741
diff changeset
1309
3005
8265a6b56100 DicomMap::FromDicomAsJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3003
diff changeset
1310 LOG(INFO) << "Number of candidate resources after fast DB filtering on main DICOM tags: " << resources.size();
3003
5ae3ff2398e9 refactoring OrthancFindRequestHandler using LookupResource::IVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3001
diff changeset
1311
3679
6358923d3ced C-FIND: forbid wildcard matching on some VRs, ignore main tags below the queried level
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3677
diff changeset
1312 /**
6358923d3ced C-FIND: forbid wildcard matching on some VRs, ignore main tags below the queried level
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3677
diff changeset
1313 * "resources" contains the Orthanc ID of the resource at level
6358923d3ced C-FIND: forbid wildcard matching on some VRs, ignore main tags below the queried level
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3677
diff changeset
1314 * "queryLevel", "instances" contains one the Orthanc ID of one
6358923d3ced C-FIND: forbid wildcard matching on some VRs, ignore main tags below the queried level
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3677
diff changeset
1315 * sample instance from this resource.
6358923d3ced C-FIND: forbid wildcard matching on some VRs, ignore main tags below the queried level
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3677
diff changeset
1316 **/
1757
98abb8d7f905 ServerContext::Apply lookup
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1741
diff changeset
1317 assert(resources.size() == instances.size());
98abb8d7f905 ServerContext::Apply lookup
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1741
diff changeset
1318
3001
7695a9c81099 refactoring /tools/find using LookupResource::IVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2965
diff changeset
1319 size_t countResults = 0;
2304
563bf878407a Argument "Since" in URI "/tools/find" (related to issue 53)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2244
diff changeset
1320 size_t skipped = 0;
3015
abe49ca61cd5 On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3012
diff changeset
1321
abe49ca61cd5 On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3012
diff changeset
1322 const bool isDicomAsJsonNeeded = visitor.IsDicomAsJsonNeeded();
3012
af1530b45290 Optimization: On finds, do not read JSON (disk) if main DICOM tags (DB) are sufficient
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3005
diff changeset
1323
1757
98abb8d7f905 ServerContext::Apply lookup
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1741
diff changeset
1324 for (size_t i = 0; i < instances.size(); i++)
98abb8d7f905 ServerContext::Apply lookup
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1741
diff changeset
1325 {
3012
af1530b45290 Optimization: On finds, do not read JSON (disk) if main DICOM tags (DB) are sufficient
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3005
diff changeset
1326 // Optimization in Orthanc 1.5.1 - Don't read the full JSON from
af1530b45290 Optimization: On finds, do not read JSON (disk) if main DICOM tags (DB) are sufficient
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3005
diff changeset
1327 // the disk if only "main DICOM tags" are to be returned
af1530b45290 Optimization: On finds, do not read JSON (disk) if main DICOM tags (DB) are sufficient
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3005
diff changeset
1328
3712
2a170a8f1faf replacing std::auto_ptr by std::unique_ptr
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3679
diff changeset
1329 std::unique_ptr<Json::Value> dicomAsJson;
3012
af1530b45290 Optimization: On finds, do not read JSON (disk) if main DICOM tags (DB) are sufficient
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3005
diff changeset
1330
af1530b45290 Optimization: On finds, do not read JSON (disk) if main DICOM tags (DB) are sufficient
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3005
diff changeset
1331 bool hasOnlyMainDicomTags;
af1530b45290 Optimization: On finds, do not read JSON (disk) if main DICOM tags (DB) are sufficient
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3005
diff changeset
1332 DicomMap dicom;
af1530b45290 Optimization: On finds, do not read JSON (disk) if main DICOM tags (DB) are sufficient
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3005
diff changeset
1333
3677
4182cde57afb refactoring FindStorageAccessMode
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3640
diff changeset
1334 if (findStorageAccessMode_ == FindStorageAccessMode_DatabaseOnly ||
4182cde57afb refactoring FindStorageAccessMode
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3640
diff changeset
1335 findStorageAccessMode_ == FindStorageAccessMode_DiskOnAnswer ||
3015
abe49ca61cd5 On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3012
diff changeset
1336 lookup.HasOnlyMainDicomTags())
3012
af1530b45290 Optimization: On finds, do not read JSON (disk) if main DICOM tags (DB) are sufficient
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3005
diff changeset
1337 {
af1530b45290 Optimization: On finds, do not read JSON (disk) if main DICOM tags (DB) are sufficient
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3005
diff changeset
1338 // Case (1): The main DICOM tags, as stored in the database,
af1530b45290 Optimization: On finds, do not read JSON (disk) if main DICOM tags (DB) are sufficient
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3005
diff changeset
1339 // are sufficient to look for match
3015
abe49ca61cd5 On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3012
diff changeset
1340
3679
6358923d3ced C-FIND: forbid wildcard matching on some VRs, ignore main tags below the queried level
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3677
diff changeset
1341 DicomMap tmp;
6358923d3ced C-FIND: forbid wildcard matching on some VRs, ignore main tags below the queried level
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3677
diff changeset
1342 if (!GetIndex().GetAllMainDicomTags(tmp, instances[i]))
3015
abe49ca61cd5 On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3012
diff changeset
1343 {
abe49ca61cd5 On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3012
diff changeset
1344 // The instance has been removed during the execution of the
abe49ca61cd5 On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3012
diff changeset
1345 // lookup, ignore it
abe49ca61cd5 On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3012
diff changeset
1346 continue;
abe49ca61cd5 On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3012
diff changeset
1347 }
3679
6358923d3ced C-FIND: forbid wildcard matching on some VRs, ignore main tags below the queried level
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3677
diff changeset
1348
6358923d3ced C-FIND: forbid wildcard matching on some VRs, ignore main tags below the queried level
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3677
diff changeset
1349 // New in Orthanc 1.6.0: Only keep the main DICOM tags at the
6358923d3ced C-FIND: forbid wildcard matching on some VRs, ignore main tags below the queried level
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3677
diff changeset
1350 // level of interest for the query
6358923d3ced C-FIND: forbid wildcard matching on some VRs, ignore main tags below the queried level
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3677
diff changeset
1351 switch (queryLevel)
6358923d3ced C-FIND: forbid wildcard matching on some VRs, ignore main tags below the queried level
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3677
diff changeset
1352 {
6358923d3ced C-FIND: forbid wildcard matching on some VRs, ignore main tags below the queried level
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3677
diff changeset
1353 // WARNING: Don't reorder cases below, and don't add "break"
6358923d3ced C-FIND: forbid wildcard matching on some VRs, ignore main tags below the queried level
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3677
diff changeset
1354 case ResourceType_Instance:
6358923d3ced C-FIND: forbid wildcard matching on some VRs, ignore main tags below the queried level
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3677
diff changeset
1355 dicom.MergeMainDicomTags(tmp, ResourceType_Instance);
6358923d3ced C-FIND: forbid wildcard matching on some VRs, ignore main tags below the queried level
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3677
diff changeset
1356
6358923d3ced C-FIND: forbid wildcard matching on some VRs, ignore main tags below the queried level
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3677
diff changeset
1357 case ResourceType_Series:
6358923d3ced C-FIND: forbid wildcard matching on some VRs, ignore main tags below the queried level
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3677
diff changeset
1358 dicom.MergeMainDicomTags(tmp, ResourceType_Series);
6358923d3ced C-FIND: forbid wildcard matching on some VRs, ignore main tags below the queried level
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3677
diff changeset
1359
6358923d3ced C-FIND: forbid wildcard matching on some VRs, ignore main tags below the queried level
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3677
diff changeset
1360 case ResourceType_Study:
6358923d3ced C-FIND: forbid wildcard matching on some VRs, ignore main tags below the queried level
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3677
diff changeset
1361 dicom.MergeMainDicomTags(tmp, ResourceType_Study);
6358923d3ced C-FIND: forbid wildcard matching on some VRs, ignore main tags below the queried level
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3677
diff changeset
1362
6358923d3ced C-FIND: forbid wildcard matching on some VRs, ignore main tags below the queried level
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3677
diff changeset
1363 case ResourceType_Patient:
6358923d3ced C-FIND: forbid wildcard matching on some VRs, ignore main tags below the queried level
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3677
diff changeset
1364 dicom.MergeMainDicomTags(tmp, ResourceType_Patient);
6358923d3ced C-FIND: forbid wildcard matching on some VRs, ignore main tags below the queried level
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3677
diff changeset
1365 break;
6358923d3ced C-FIND: forbid wildcard matching on some VRs, ignore main tags below the queried level
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3677
diff changeset
1366
6358923d3ced C-FIND: forbid wildcard matching on some VRs, ignore main tags below the queried level
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3677
diff changeset
1367 default:
6358923d3ced C-FIND: forbid wildcard matching on some VRs, ignore main tags below the queried level
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3677
diff changeset
1368 throw OrthancException(ErrorCode_InternalError);
6358923d3ced C-FIND: forbid wildcard matching on some VRs, ignore main tags below the queried level
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3677
diff changeset
1369 }
3015
abe49ca61cd5 On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3012
diff changeset
1370
3012
af1530b45290 Optimization: On finds, do not read JSON (disk) if main DICOM tags (DB) are sufficient
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3005
diff changeset
1371 hasOnlyMainDicomTags = true;
af1530b45290 Optimization: On finds, do not read JSON (disk) if main DICOM tags (DB) are sufficient
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3005
diff changeset
1372 }
af1530b45290 Optimization: On finds, do not read JSON (disk) if main DICOM tags (DB) are sufficient
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3005
diff changeset
1373 else
af1530b45290 Optimization: On finds, do not read JSON (disk) if main DICOM tags (DB) are sufficient
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3005
diff changeset
1374 {
af1530b45290 Optimization: On finds, do not read JSON (disk) if main DICOM tags (DB) are sufficient
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3005
diff changeset
1375 // Case (2): Need to read the "DICOM-as-JSON" attachment from
af1530b45290 Optimization: On finds, do not read JSON (disk) if main DICOM tags (DB) are sufficient
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3005
diff changeset
1376 // the storage area
af1530b45290 Optimization: On finds, do not read JSON (disk) if main DICOM tags (DB) are sufficient
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3005
diff changeset
1377 dicomAsJson.reset(new Json::Value);
af1530b45290 Optimization: On finds, do not read JSON (disk) if main DICOM tags (DB) are sufficient
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3005
diff changeset
1378 ReadDicomAsJson(*dicomAsJson, instances[i]);
af1530b45290 Optimization: On finds, do not read JSON (disk) if main DICOM tags (DB) are sufficient
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3005
diff changeset
1379
af1530b45290 Optimization: On finds, do not read JSON (disk) if main DICOM tags (DB) are sufficient
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3005
diff changeset
1380 dicom.FromDicomAsJson(*dicomAsJson);
af1530b45290 Optimization: On finds, do not read JSON (disk) if main DICOM tags (DB) are sufficient
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3005
diff changeset
1381
af1530b45290 Optimization: On finds, do not read JSON (disk) if main DICOM tags (DB) are sufficient
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3005
diff changeset
1382 // This map contains the entire JSON, i.e. more than the main DICOM tags
af1530b45290 Optimization: On finds, do not read JSON (disk) if main DICOM tags (DB) are sufficient
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3005
diff changeset
1383 hasOnlyMainDicomTags = false;
af1530b45290 Optimization: On finds, do not read JSON (disk) if main DICOM tags (DB) are sufficient
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3005
diff changeset
1384 }
1757
98abb8d7f905 ServerContext::Apply lookup
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1741
diff changeset
1385
98abb8d7f905 ServerContext::Apply lookup
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1741
diff changeset
1386 if (lookup.IsMatch(dicom))
98abb8d7f905 ServerContext::Apply lookup
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1741
diff changeset
1387 {
2304
563bf878407a Argument "Since" in URI "/tools/find" (related to issue 53)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2244
diff changeset
1388 if (skipped < since)
1757
98abb8d7f905 ServerContext::Apply lookup
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1741
diff changeset
1389 {
2304
563bf878407a Argument "Since" in URI "/tools/find" (related to issue 53)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2244
diff changeset
1390 skipped++;
563bf878407a Argument "Since" in URI "/tools/find" (related to issue 53)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2244
diff changeset
1391 }
563bf878407a Argument "Since" in URI "/tools/find" (related to issue 53)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2244
diff changeset
1392 else if (limit != 0 &&
3001
7695a9c81099 refactoring /tools/find using LookupResource::IVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2965
diff changeset
1393 countResults >= limit)
2304
563bf878407a Argument "Since" in URI "/tools/find" (related to issue 53)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2244
diff changeset
1394 {
3003
5ae3ff2398e9 refactoring OrthancFindRequestHandler using LookupResource::IVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3001
diff changeset
1395 // Too many results, don't mark as complete
5ae3ff2398e9 refactoring OrthancFindRequestHandler using LookupResource::IVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3001
diff changeset
1396 complete = false;
5ae3ff2398e9 refactoring OrthancFindRequestHandler using LookupResource::IVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3001
diff changeset
1397 break;
1757
98abb8d7f905 ServerContext::Apply lookup
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1741
diff changeset
1398 }
98abb8d7f905 ServerContext::Apply lookup
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1741
diff changeset
1399 else
98abb8d7f905 ServerContext::Apply lookup
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1741
diff changeset
1400 {
3677
4182cde57afb refactoring FindStorageAccessMode
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3640
diff changeset
1401 if ((findStorageAccessMode_ == FindStorageAccessMode_DiskOnLookupAndAnswer ||
4182cde57afb refactoring FindStorageAccessMode
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3640
diff changeset
1402 findStorageAccessMode_ == FindStorageAccessMode_DiskOnAnswer) &&
3015
abe49ca61cd5 On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3012
diff changeset
1403 dicomAsJson.get() == NULL &&
abe49ca61cd5 On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3012
diff changeset
1404 isDicomAsJsonNeeded)
3012
af1530b45290 Optimization: On finds, do not read JSON (disk) if main DICOM tags (DB) are sufficient
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3005
diff changeset
1405 {
af1530b45290 Optimization: On finds, do not read JSON (disk) if main DICOM tags (DB) are sufficient
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3005
diff changeset
1406 dicomAsJson.reset(new Json::Value);
af1530b45290 Optimization: On finds, do not read JSON (disk) if main DICOM tags (DB) are sufficient
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3005
diff changeset
1407 ReadDicomAsJson(*dicomAsJson, instances[i]);
af1530b45290 Optimization: On finds, do not read JSON (disk) if main DICOM tags (DB) are sufficient
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3005
diff changeset
1408 }
af1530b45290 Optimization: On finds, do not read JSON (disk) if main DICOM tags (DB) are sufficient
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3005
diff changeset
1409
af1530b45290 Optimization: On finds, do not read JSON (disk) if main DICOM tags (DB) are sufficient
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3005
diff changeset
1410 if (hasOnlyMainDicomTags)
af1530b45290 Optimization: On finds, do not read JSON (disk) if main DICOM tags (DB) are sufficient
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3005
diff changeset
1411 {
af1530b45290 Optimization: On finds, do not read JSON (disk) if main DICOM tags (DB) are sufficient
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3005
diff changeset
1412 // This is Case (1): The variable "dicom" only contains the main DICOM tags
af1530b45290 Optimization: On finds, do not read JSON (disk) if main DICOM tags (DB) are sufficient
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3005
diff changeset
1413 visitor.Visit(resources[i], instances[i], dicom, dicomAsJson.get());
af1530b45290 Optimization: On finds, do not read JSON (disk) if main DICOM tags (DB) are sufficient
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3005
diff changeset
1414 }
af1530b45290 Optimization: On finds, do not read JSON (disk) if main DICOM tags (DB) are sufficient
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3005
diff changeset
1415 else
af1530b45290 Optimization: On finds, do not read JSON (disk) if main DICOM tags (DB) are sufficient
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3005
diff changeset
1416 {
af1530b45290 Optimization: On finds, do not read JSON (disk) if main DICOM tags (DB) are sufficient
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3005
diff changeset
1417 // Remove the non-main DICOM tags from "dicom" if Case (2)
af1530b45290 Optimization: On finds, do not read JSON (disk) if main DICOM tags (DB) are sufficient
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3005
diff changeset
1418 // was used, for consistency with Case (1)
af1530b45290 Optimization: On finds, do not read JSON (disk) if main DICOM tags (DB) are sufficient
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3005
diff changeset
1419
af1530b45290 Optimization: On finds, do not read JSON (disk) if main DICOM tags (DB) are sufficient
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3005
diff changeset
1420 DicomMap mainDicomTags;
af1530b45290 Optimization: On finds, do not read JSON (disk) if main DICOM tags (DB) are sufficient
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3005
diff changeset
1421 mainDicomTags.ExtractMainDicomTags(dicom);
af1530b45290 Optimization: On finds, do not read JSON (disk) if main DICOM tags (DB) are sufficient
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3005
diff changeset
1422 visitor.Visit(resources[i], instances[i], mainDicomTags, dicomAsJson.get());
af1530b45290 Optimization: On finds, do not read JSON (disk) if main DICOM tags (DB) are sufficient
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3005
diff changeset
1423 }
af1530b45290 Optimization: On finds, do not read JSON (disk) if main DICOM tags (DB) are sufficient
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3005
diff changeset
1424
3001
7695a9c81099 refactoring /tools/find using LookupResource::IVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2965
diff changeset
1425 countResults ++;
1757
98abb8d7f905 ServerContext::Apply lookup
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1741
diff changeset
1426 }
98abb8d7f905 ServerContext::Apply lookup
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1741
diff changeset
1427 }
98abb8d7f905 ServerContext::Apply lookup
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1741
diff changeset
1428 }
3001
7695a9c81099 refactoring /tools/find using LookupResource::IVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2965
diff changeset
1429
3003
5ae3ff2398e9 refactoring OrthancFindRequestHandler using LookupResource::IVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3001
diff changeset
1430 if (complete)
5ae3ff2398e9 refactoring OrthancFindRequestHandler using LookupResource::IVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3001
diff changeset
1431 {
5ae3ff2398e9 refactoring OrthancFindRequestHandler using LookupResource::IVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3001
diff changeset
1432 visitor.MarkAsComplete();
5ae3ff2398e9 refactoring OrthancFindRequestHandler using LookupResource::IVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3001
diff changeset
1433 }
5ae3ff2398e9 refactoring OrthancFindRequestHandler using LookupResource::IVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3001
diff changeset
1434
5ae3ff2398e9 refactoring OrthancFindRequestHandler using LookupResource::IVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3001
diff changeset
1435 LOG(INFO) << "Number of matching resources: " << countResults;
1757
98abb8d7f905 ServerContext::Apply lookup
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1741
diff changeset
1436 }
98abb8d7f905 ServerContext::Apply lookup
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1741
diff changeset
1437
2626
e09021ddc00d cleanup
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2617
diff changeset
1438
4196
37310bb1cd30 Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4143
diff changeset
1439
37310bb1cd30 Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4143
diff changeset
1440 namespace
37310bb1cd30 Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4143
diff changeset
1441 {
37310bb1cd30 Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4143
diff changeset
1442 class ModalitiesInStudyVisitor : public ServerContext::ILookupVisitor
37310bb1cd30 Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4143
diff changeset
1443 {
37310bb1cd30 Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4143
diff changeset
1444 private:
37310bb1cd30 Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4143
diff changeset
1445 class Study : public boost::noncopyable
37310bb1cd30 Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4143
diff changeset
1446 {
37310bb1cd30 Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4143
diff changeset
1447 private:
37310bb1cd30 Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4143
diff changeset
1448 std::string orthancId_;
37310bb1cd30 Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4143
diff changeset
1449 std::string instanceId_;
37310bb1cd30 Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4143
diff changeset
1450 DicomMap mainDicomTags_;
37310bb1cd30 Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4143
diff changeset
1451 Json::Value dicomAsJson_;
37310bb1cd30 Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4143
diff changeset
1452 std::set<std::string> modalitiesInStudy_;
37310bb1cd30 Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4143
diff changeset
1453
37310bb1cd30 Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4143
diff changeset
1454 public:
37310bb1cd30 Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4143
diff changeset
1455 Study(const std::string& instanceId,
37310bb1cd30 Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4143
diff changeset
1456 const DicomMap& seriesTags) :
37310bb1cd30 Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4143
diff changeset
1457 instanceId_(instanceId),
37310bb1cd30 Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4143
diff changeset
1458 dicomAsJson_(Json::nullValue)
37310bb1cd30 Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4143
diff changeset
1459 {
37310bb1cd30 Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4143
diff changeset
1460 {
37310bb1cd30 Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4143
diff changeset
1461 DicomMap tmp;
37310bb1cd30 Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4143
diff changeset
1462 tmp.Assign(seriesTags);
37310bb1cd30 Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4143
diff changeset
1463 tmp.SetValue(DICOM_TAG_SOP_INSTANCE_UID, "dummy", false);
37310bb1cd30 Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4143
diff changeset
1464 DicomInstanceHasher hasher(tmp);
37310bb1cd30 Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4143
diff changeset
1465 orthancId_ = hasher.HashStudy();
37310bb1cd30 Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4143
diff changeset
1466 }
37310bb1cd30 Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4143
diff changeset
1467
37310bb1cd30 Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4143
diff changeset
1468 mainDicomTags_.MergeMainDicomTags(seriesTags, ResourceType_Study);
37310bb1cd30 Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4143
diff changeset
1469 mainDicomTags_.MergeMainDicomTags(seriesTags, ResourceType_Patient);
37310bb1cd30 Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4143
diff changeset
1470 AddModality(seriesTags);
37310bb1cd30 Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4143
diff changeset
1471 }
37310bb1cd30 Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4143
diff changeset
1472
37310bb1cd30 Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4143
diff changeset
1473 void AddModality(const DicomMap& seriesTags)
37310bb1cd30 Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4143
diff changeset
1474 {
37310bb1cd30 Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4143
diff changeset
1475 std::string modality;
37310bb1cd30 Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4143
diff changeset
1476 if (seriesTags.LookupStringValue(modality, DICOM_TAG_MODALITY, false) &&
37310bb1cd30 Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4143
diff changeset
1477 !modality.empty())
37310bb1cd30 Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4143
diff changeset
1478 {
37310bb1cd30 Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4143
diff changeset
1479 modalitiesInStudy_.insert(modality);
37310bb1cd30 Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4143
diff changeset
1480 }
37310bb1cd30 Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4143
diff changeset
1481 }
37310bb1cd30 Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4143
diff changeset
1482
37310bb1cd30 Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4143
diff changeset
1483 void SetDicomAsJson(const Json::Value& dicomAsJson)
37310bb1cd30 Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4143
diff changeset
1484 {
37310bb1cd30 Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4143
diff changeset
1485 dicomAsJson_ = dicomAsJson;
37310bb1cd30 Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4143
diff changeset
1486 }
37310bb1cd30 Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4143
diff changeset
1487
37310bb1cd30 Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4143
diff changeset
1488 const std::string& GetOrthancId() const
37310bb1cd30 Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4143
diff changeset
1489 {
37310bb1cd30 Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4143
diff changeset
1490 return orthancId_;
37310bb1cd30 Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4143
diff changeset
1491 }
37310bb1cd30 Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4143
diff changeset
1492
37310bb1cd30 Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4143
diff changeset
1493 const std::string& GetInstanceId() const
37310bb1cd30 Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4143
diff changeset
1494 {
37310bb1cd30 Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4143
diff changeset
1495 return instanceId_;
37310bb1cd30 Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4143
diff changeset
1496 }
37310bb1cd30 Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4143
diff changeset
1497
37310bb1cd30 Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4143
diff changeset
1498 const DicomMap& GetMainDicomTags() const
37310bb1cd30 Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4143
diff changeset
1499 {
37310bb1cd30 Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4143
diff changeset
1500 return mainDicomTags_;
37310bb1cd30 Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4143
diff changeset
1501 }
37310bb1cd30 Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4143
diff changeset
1502
37310bb1cd30 Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4143
diff changeset
1503 const Json::Value* GetDicomAsJson() const
37310bb1cd30 Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4143
diff changeset
1504 {
37310bb1cd30 Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4143
diff changeset
1505 if (dicomAsJson_.type() == Json::nullValue)
37310bb1cd30 Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4143
diff changeset
1506 {
37310bb1cd30 Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4143
diff changeset
1507 return NULL;
37310bb1cd30 Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4143
diff changeset
1508 }
37310bb1cd30 Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4143
diff changeset
1509 else
37310bb1cd30 Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4143
diff changeset
1510 {
37310bb1cd30 Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4143
diff changeset
1511 return &dicomAsJson_;
37310bb1cd30 Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4143
diff changeset
1512 }
37310bb1cd30 Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4143
diff changeset
1513 }
37310bb1cd30 Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4143
diff changeset
1514 };
37310bb1cd30 Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4143
diff changeset
1515
37310bb1cd30 Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4143
diff changeset
1516 typedef std::map<std::string, Study*> Studies;
37310bb1cd30 Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4143
diff changeset
1517
37310bb1cd30 Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4143
diff changeset
1518 bool isDicomAsJsonNeeded_;
37310bb1cd30 Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4143
diff changeset
1519 bool complete_;
37310bb1cd30 Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4143
diff changeset
1520 Studies studies_;
37310bb1cd30 Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4143
diff changeset
1521
37310bb1cd30 Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4143
diff changeset
1522 public:
4205
d962a2996637 cppcheck
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4203
diff changeset
1523 explicit ModalitiesInStudyVisitor(bool isDicomAsJsonNeeded) :
d962a2996637 cppcheck
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4203
diff changeset
1524 isDicomAsJsonNeeded_(isDicomAsJsonNeeded),
d962a2996637 cppcheck
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4203
diff changeset
1525 complete_(false)
4196
37310bb1cd30 Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4143
diff changeset
1526 {
37310bb1cd30 Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4143
diff changeset
1527 }
37310bb1cd30 Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4143
diff changeset
1528
37310bb1cd30 Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4143
diff changeset
1529 ~ModalitiesInStudyVisitor()
37310bb1cd30 Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4143
diff changeset
1530 {
37310bb1cd30 Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4143
diff changeset
1531 for (Studies::const_iterator it = studies_.begin(); it != studies_.end(); ++it)
37310bb1cd30 Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4143
diff changeset
1532 {
37310bb1cd30 Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4143
diff changeset
1533 assert(it->second != NULL);
37310bb1cd30 Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4143
diff changeset
1534 delete it->second;
37310bb1cd30 Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4143
diff changeset
1535 }
37310bb1cd30 Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4143
diff changeset
1536
37310bb1cd30 Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4143
diff changeset
1537 studies_.clear();
37310bb1cd30 Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4143
diff changeset
1538 }
37310bb1cd30 Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4143
diff changeset
1539
4205
d962a2996637 cppcheck
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4203
diff changeset
1540 virtual bool IsDicomAsJsonNeeded() const ORTHANC_OVERRIDE
4196
37310bb1cd30 Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4143
diff changeset
1541 {
37310bb1cd30 Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4143
diff changeset
1542 return isDicomAsJsonNeeded_;
37310bb1cd30 Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4143
diff changeset
1543 }
37310bb1cd30 Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4143
diff changeset
1544
4205
d962a2996637 cppcheck
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4203
diff changeset
1545 virtual void MarkAsComplete() ORTHANC_OVERRIDE
4196
37310bb1cd30 Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4143
diff changeset
1546 {
37310bb1cd30 Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4143
diff changeset
1547 complete_ = true;
37310bb1cd30 Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4143
diff changeset
1548 }
37310bb1cd30 Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4143
diff changeset
1549
37310bb1cd30 Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4143
diff changeset
1550 virtual void Visit(const std::string& publicId,
37310bb1cd30 Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4143
diff changeset
1551 const std::string& instanceId,
37310bb1cd30 Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4143
diff changeset
1552 const DicomMap& seriesTags,
4205
d962a2996637 cppcheck
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4203
diff changeset
1553 const Json::Value* dicomAsJson) ORTHANC_OVERRIDE
4196
37310bb1cd30 Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4143
diff changeset
1554 {
37310bb1cd30 Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4143
diff changeset
1555 std::string studyInstanceUid;
37310bb1cd30 Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4143
diff changeset
1556 if (seriesTags.LookupStringValue(studyInstanceUid, DICOM_TAG_STUDY_INSTANCE_UID, false))
37310bb1cd30 Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4143
diff changeset
1557 {
37310bb1cd30 Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4143
diff changeset
1558 Studies::iterator found = studies_.find(studyInstanceUid);
37310bb1cd30 Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4143
diff changeset
1559 if (found == studies_.end())
37310bb1cd30 Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4143
diff changeset
1560 {
37310bb1cd30 Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4143
diff changeset
1561 // New study
37310bb1cd30 Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4143
diff changeset
1562 std::unique_ptr<Study> study(new Study(instanceId, seriesTags));
37310bb1cd30 Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4143
diff changeset
1563
37310bb1cd30 Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4143
diff changeset
1564 if (dicomAsJson != NULL)
37310bb1cd30 Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4143
diff changeset
1565 {
37310bb1cd30 Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4143
diff changeset
1566 study->SetDicomAsJson(*dicomAsJson);
37310bb1cd30 Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4143
diff changeset
1567 }
37310bb1cd30 Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4143
diff changeset
1568
37310bb1cd30 Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4143
diff changeset
1569 studies_[studyInstanceUid] = study.release();
37310bb1cd30 Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4143
diff changeset
1570 }
37310bb1cd30 Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4143
diff changeset
1571 else
37310bb1cd30 Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4143
diff changeset
1572 {
37310bb1cd30 Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4143
diff changeset
1573 // Already existing study
37310bb1cd30 Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4143
diff changeset
1574 found->second->AddModality(seriesTags);
37310bb1cd30 Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4143
diff changeset
1575 }
37310bb1cd30 Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4143
diff changeset
1576 }
37310bb1cd30 Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4143
diff changeset
1577 }
37310bb1cd30 Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4143
diff changeset
1578
37310bb1cd30 Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4143
diff changeset
1579 void Forward(ILookupVisitor& callerVisitor,
37310bb1cd30 Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4143
diff changeset
1580 size_t since,
37310bb1cd30 Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4143
diff changeset
1581 size_t limit) const
4205
d962a2996637 cppcheck
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4203
diff changeset
1582 {
4196
37310bb1cd30 Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4143
diff changeset
1583 size_t index = 0;
37310bb1cd30 Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4143
diff changeset
1584 size_t countForwarded = 0;
37310bb1cd30 Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4143
diff changeset
1585
37310bb1cd30 Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4143
diff changeset
1586 for (Studies::const_iterator it = studies_.begin(); it != studies_.end(); ++it, index++)
37310bb1cd30 Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4143
diff changeset
1587 {
37310bb1cd30 Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4143
diff changeset
1588 if (limit == 0 ||
37310bb1cd30 Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4143
diff changeset
1589 (index >= since &&
37310bb1cd30 Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4143
diff changeset
1590 index < limit))
37310bb1cd30 Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4143
diff changeset
1591 {
37310bb1cd30 Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4143
diff changeset
1592 assert(it->second != NULL);
37310bb1cd30 Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4143
diff changeset
1593 const Study& study = *it->second;
37310bb1cd30 Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4143
diff changeset
1594
37310bb1cd30 Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4143
diff changeset
1595 countForwarded++;
37310bb1cd30 Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4143
diff changeset
1596 callerVisitor.Visit(study.GetOrthancId(), study.GetInstanceId(),
37310bb1cd30 Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4143
diff changeset
1597 study.GetMainDicomTags(), study.GetDicomAsJson());
37310bb1cd30 Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4143
diff changeset
1598 }
37310bb1cd30 Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4143
diff changeset
1599 }
37310bb1cd30 Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4143
diff changeset
1600
37310bb1cd30 Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4143
diff changeset
1601 if (countForwarded == studies_.size())
37310bb1cd30 Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4143
diff changeset
1602 {
37310bb1cd30 Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4143
diff changeset
1603 callerVisitor.MarkAsComplete();
37310bb1cd30 Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4143
diff changeset
1604 }
37310bb1cd30 Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4143
diff changeset
1605 }
37310bb1cd30 Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4143
diff changeset
1606 };
37310bb1cd30 Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4143
diff changeset
1607 }
37310bb1cd30 Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4143
diff changeset
1608
37310bb1cd30 Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4143
diff changeset
1609
37310bb1cd30 Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4143
diff changeset
1610 void ServerContext::Apply(ILookupVisitor& visitor,
37310bb1cd30 Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4143
diff changeset
1611 const DatabaseLookup& lookup,
37310bb1cd30 Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4143
diff changeset
1612 ResourceType queryLevel,
37310bb1cd30 Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4143
diff changeset
1613 size_t since,
37310bb1cd30 Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4143
diff changeset
1614 size_t limit)
37310bb1cd30 Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4143
diff changeset
1615 {
37310bb1cd30 Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4143
diff changeset
1616 if (queryLevel == ResourceType_Study &&
37310bb1cd30 Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4143
diff changeset
1617 lookup.HasTag(DICOM_TAG_MODALITIES_IN_STUDY))
37310bb1cd30 Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4143
diff changeset
1618 {
37310bb1cd30 Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4143
diff changeset
1619 // Convert the study-level query, into a series-level query,
37310bb1cd30 Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4143
diff changeset
1620 // where "ModalitiesInStudy" is replaced by "Modality"
37310bb1cd30 Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4143
diff changeset
1621 DatabaseLookup seriesLookup;
37310bb1cd30 Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4143
diff changeset
1622
37310bb1cd30 Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4143
diff changeset
1623 for (size_t i = 0; i < lookup.GetConstraintsCount(); i++)
37310bb1cd30 Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4143
diff changeset
1624 {
37310bb1cd30 Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4143
diff changeset
1625 const DicomTagConstraint& constraint = lookup.GetConstraint(i);
37310bb1cd30 Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4143
diff changeset
1626 if (constraint.GetTag() == DICOM_TAG_MODALITIES_IN_STUDY)
37310bb1cd30 Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4143
diff changeset
1627 {
37310bb1cd30 Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4143
diff changeset
1628 if ((constraint.GetConstraintType() == ConstraintType_Equal && constraint.GetValue().empty()) ||
37310bb1cd30 Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4143
diff changeset
1629 (constraint.GetConstraintType() == ConstraintType_List && constraint.GetValues().empty()))
37310bb1cd30 Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4143
diff changeset
1630 {
37310bb1cd30 Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4143
diff changeset
1631 // Ignore universal lookup on "ModalitiesInStudy" (0008,0061),
37310bb1cd30 Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4143
diff changeset
1632 // this should have been handled by the caller
4218
8e069a7e1c11 validation against orthanc-tests
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4205
diff changeset
1633 ApplyInternal(visitor, lookup, queryLevel, since, limit);
8e069a7e1c11 validation against orthanc-tests
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4205
diff changeset
1634 return;
4196
37310bb1cd30 Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4143
diff changeset
1635 }
37310bb1cd30 Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4143
diff changeset
1636 else
37310bb1cd30 Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4143
diff changeset
1637 {
37310bb1cd30 Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4143
diff changeset
1638 DicomTagConstraint modality(constraint);
37310bb1cd30 Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4143
diff changeset
1639 modality.SetTag(DICOM_TAG_MODALITY);
37310bb1cd30 Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4143
diff changeset
1640 seriesLookup.AddConstraint(modality);
37310bb1cd30 Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4143
diff changeset
1641 }
37310bb1cd30 Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4143
diff changeset
1642 }
37310bb1cd30 Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4143
diff changeset
1643 else
37310bb1cd30 Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4143
diff changeset
1644 {
37310bb1cd30 Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4143
diff changeset
1645 seriesLookup.AddConstraint(constraint);
37310bb1cd30 Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4143
diff changeset
1646 }
37310bb1cd30 Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4143
diff changeset
1647 }
37310bb1cd30 Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4143
diff changeset
1648
37310bb1cd30 Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4143
diff changeset
1649 ModalitiesInStudyVisitor seriesVisitor(visitor.IsDicomAsJsonNeeded());
37310bb1cd30 Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4143
diff changeset
1650 ApplyInternal(seriesVisitor, seriesLookup, ResourceType_Series, 0, 0);
37310bb1cd30 Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4143
diff changeset
1651 seriesVisitor.Forward(visitor, since, limit);
37310bb1cd30 Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4143
diff changeset
1652 }
37310bb1cd30 Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4143
diff changeset
1653 else
37310bb1cd30 Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4143
diff changeset
1654 {
37310bb1cd30 Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4143
diff changeset
1655 ApplyInternal(visitor, lookup, queryLevel, since, limit);
37310bb1cd30 Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4143
diff changeset
1656 }
37310bb1cd30 Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4143
diff changeset
1657 }
37310bb1cd30 Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4143
diff changeset
1658
37310bb1cd30 Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4143
diff changeset
1659
3015
abe49ca61cd5 On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3012
diff changeset
1660 bool ServerContext::LookupOrReconstructMetadata(std::string& target,
abe49ca61cd5 On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3012
diff changeset
1661 const std::string& publicId,
4460
6831de40acd9 New metadata automatically computed at the series level: "RemoteAET"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4457
diff changeset
1662 ResourceType level,
3015
abe49ca61cd5 On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3012
diff changeset
1663 MetadataType metadata)
abe49ca61cd5 On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3012
diff changeset
1664 {
abe49ca61cd5 On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3012
diff changeset
1665 // This is a backwards-compatibility function, that can
abe49ca61cd5 On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3012
diff changeset
1666 // reconstruct metadata that were not generated by an older
abe49ca61cd5 On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3012
diff changeset
1667 // release of Orthanc
abe49ca61cd5 On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3012
diff changeset
1668
abe49ca61cd5 On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3012
diff changeset
1669 if (metadata == MetadataType_Instance_SopClassUid ||
abe49ca61cd5 On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3012
diff changeset
1670 metadata == MetadataType_Instance_TransferSyntax)
abe49ca61cd5 On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3012
diff changeset
1671 {
4623
95ffe3b6ef7c handling of revisions for metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4607
diff changeset
1672 int64_t revision; // Ignored
95ffe3b6ef7c handling of revisions for metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4607
diff changeset
1673 if (index_.LookupMetadata(target, revision, publicId, level, metadata))
3015
abe49ca61cd5 On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3012
diff changeset
1674 {
abe49ca61cd5 On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3012
diff changeset
1675 return true;
abe49ca61cd5 On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3012
diff changeset
1676 }
abe49ca61cd5 On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3012
diff changeset
1677 else
abe49ca61cd5 On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3012
diff changeset
1678 {
abe49ca61cd5 On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3012
diff changeset
1679 // These metadata are mandatory in DICOM instances, and were
abe49ca61cd5 On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3012
diff changeset
1680 // introduced in Orthanc 1.2.0. The fact that
abe49ca61cd5 On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3012
diff changeset
1681 // "LookupMetadata()" has failed indicates that this database
abe49ca61cd5 On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3012
diff changeset
1682 // comes from an older release of Orthanc.
abe49ca61cd5 On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3012
diff changeset
1683
abe49ca61cd5 On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3012
diff changeset
1684 DicomTag tag(0, 0);
abe49ca61cd5 On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3012
diff changeset
1685
abe49ca61cd5 On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3012
diff changeset
1686 switch (metadata)
abe49ca61cd5 On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3012
diff changeset
1687 {
abe49ca61cd5 On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3012
diff changeset
1688 case MetadataType_Instance_SopClassUid:
abe49ca61cd5 On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3012
diff changeset
1689 tag = DICOM_TAG_SOP_CLASS_UID;
abe49ca61cd5 On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3012
diff changeset
1690 break;
abe49ca61cd5 On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3012
diff changeset
1691
abe49ca61cd5 On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3012
diff changeset
1692 case MetadataType_Instance_TransferSyntax:
abe49ca61cd5 On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3012
diff changeset
1693 tag = DICOM_TAG_TRANSFER_SYNTAX_UID;
abe49ca61cd5 On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3012
diff changeset
1694 break;
abe49ca61cd5 On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3012
diff changeset
1695
abe49ca61cd5 On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3012
diff changeset
1696 default:
abe49ca61cd5 On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3012
diff changeset
1697 throw OrthancException(ErrorCode_InternalError);
abe49ca61cd5 On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3012
diff changeset
1698 }
abe49ca61cd5 On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3012
diff changeset
1699
abe49ca61cd5 On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3012
diff changeset
1700 Json::Value dicomAsJson;
abe49ca61cd5 On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3012
diff changeset
1701 ReadDicomAsJson(dicomAsJson, publicId);
abe49ca61cd5 On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3012
diff changeset
1702
abe49ca61cd5 On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3012
diff changeset
1703 DicomMap tags;
abe49ca61cd5 On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3012
diff changeset
1704 tags.FromDicomAsJson(dicomAsJson);
abe49ca61cd5 On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3012
diff changeset
1705
abe49ca61cd5 On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3012
diff changeset
1706 const DicomValue* value = tags.TestAndGetValue(tag);
abe49ca61cd5 On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3012
diff changeset
1707
abe49ca61cd5 On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3012
diff changeset
1708 if (value != NULL &&
abe49ca61cd5 On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3012
diff changeset
1709 !value->IsNull() &&
abe49ca61cd5 On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3012
diff changeset
1710 !value->IsBinary())
abe49ca61cd5 On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3012
diff changeset
1711 {
abe49ca61cd5 On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3012
diff changeset
1712 target = value->GetContent();
abe49ca61cd5 On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3012
diff changeset
1713
abe49ca61cd5 On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3012
diff changeset
1714 // Store for reuse
4623
95ffe3b6ef7c handling of revisions for metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4607
diff changeset
1715 index_.OverwriteMetadata(publicId, metadata, target);
3015
abe49ca61cd5 On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3012
diff changeset
1716 return true;
abe49ca61cd5 On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3012
diff changeset
1717 }
abe49ca61cd5 On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3012
diff changeset
1718 else
abe49ca61cd5 On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3012
diff changeset
1719 {
abe49ca61cd5 On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3012
diff changeset
1720 // Should never happen
abe49ca61cd5 On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3012
diff changeset
1721 return false;
abe49ca61cd5 On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3012
diff changeset
1722 }
abe49ca61cd5 On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3012
diff changeset
1723 }
abe49ca61cd5 On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3012
diff changeset
1724 }
abe49ca61cd5 On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3012
diff changeset
1725 else
abe49ca61cd5 On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3012
diff changeset
1726 {
abe49ca61cd5 On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3012
diff changeset
1727 // No backward
4623
95ffe3b6ef7c handling of revisions for metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4607
diff changeset
1728 int64_t revision; // Ignored
95ffe3b6ef7c handling of revisions for metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4607
diff changeset
1729 return index_.LookupMetadata(target, revision, publicId, level, metadata);
3015
abe49ca61cd5 On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3012
diff changeset
1730 }
abe49ca61cd5 On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3012
diff changeset
1731 }
abe49ca61cd5 On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3012
diff changeset
1732
abe49ca61cd5 On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3012
diff changeset
1733
2626
e09021ddc00d cleanup
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2617
diff changeset
1734 void ServerContext::AddChildInstances(SetOfInstancesJob& job,
e09021ddc00d cleanup
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2617
diff changeset
1735 const std::string& publicId)
e09021ddc00d cleanup
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2617
diff changeset
1736 {
e09021ddc00d cleanup
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2617
diff changeset
1737 std::list<std::string> instances;
e09021ddc00d cleanup
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2617
diff changeset
1738 GetIndex().GetChildInstances(instances, publicId);
e09021ddc00d cleanup
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2617
diff changeset
1739
e09021ddc00d cleanup
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2617
diff changeset
1740 job.Reserve(job.GetInstancesCount() + instances.size());
e09021ddc00d cleanup
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2617
diff changeset
1741
e09021ddc00d cleanup
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2617
diff changeset
1742 for (std::list<std::string>::const_iterator
e09021ddc00d cleanup
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2617
diff changeset
1743 it = instances.begin(); it != instances.end(); ++it)
e09021ddc00d cleanup
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2617
diff changeset
1744 {
e09021ddc00d cleanup
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2617
diff changeset
1745 job.AddInstance(*it);
e09021ddc00d cleanup
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2617
diff changeset
1746 }
e09021ddc00d cleanup
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2617
diff changeset
1747 }
2940
4767d36679ed refactoring access to Orthanc configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2925
diff changeset
1748
4767d36679ed refactoring access to Orthanc configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2925
diff changeset
1749
4767d36679ed refactoring access to Orthanc configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2925
diff changeset
1750 void ServerContext::SignalUpdatedModalities()
4767d36679ed refactoring access to Orthanc configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2925
diff changeset
1751 {
4767d36679ed refactoring access to Orthanc configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2925
diff changeset
1752 #if ORTHANC_ENABLE_PLUGINS == 1
4767d36679ed refactoring access to Orthanc configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2925
diff changeset
1753 if (HasPlugins())
4767d36679ed refactoring access to Orthanc configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2925
diff changeset
1754 {
4767d36679ed refactoring access to Orthanc configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2925
diff changeset
1755 GetPlugins().SignalUpdatedModalities();
4767d36679ed refactoring access to Orthanc configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2925
diff changeset
1756 }
4767d36679ed refactoring access to Orthanc configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2925
diff changeset
1757 #endif
4767d36679ed refactoring access to Orthanc configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2925
diff changeset
1758 }
4767d36679ed refactoring access to Orthanc configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2925
diff changeset
1759
4767d36679ed refactoring access to Orthanc configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2925
diff changeset
1760
4767d36679ed refactoring access to Orthanc configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2925
diff changeset
1761 void ServerContext::SignalUpdatedPeers()
4767d36679ed refactoring access to Orthanc configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2925
diff changeset
1762 {
4767d36679ed refactoring access to Orthanc configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2925
diff changeset
1763 #if ORTHANC_ENABLE_PLUGINS == 1
4767d36679ed refactoring access to Orthanc configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2925
diff changeset
1764 if (HasPlugins())
4767d36679ed refactoring access to Orthanc configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2925
diff changeset
1765 {
4767d36679ed refactoring access to Orthanc configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2925
diff changeset
1766 GetPlugins().SignalUpdatedPeers();
4767d36679ed refactoring access to Orthanc configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2925
diff changeset
1767 }
4767d36679ed refactoring access to Orthanc configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2925
diff changeset
1768 #endif
4767d36679ed refactoring access to Orthanc configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2925
diff changeset
1769 }
3660
f159b731c47d IStorageCommitmentFactory
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3640
diff changeset
1770
f159b731c47d IStorageCommitmentFactory
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3640
diff changeset
1771
f159b731c47d IStorageCommitmentFactory
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3640
diff changeset
1772 IStorageCommitmentFactory::ILookupHandler*
f159b731c47d IStorageCommitmentFactory
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3640
diff changeset
1773 ServerContext::CreateStorageCommitment(const std::string& jobId,
f159b731c47d IStorageCommitmentFactory
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3640
diff changeset
1774 const std::string& transactionUid,
f159b731c47d IStorageCommitmentFactory
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3640
diff changeset
1775 const std::vector<std::string>& sopClassUids,
3662
d8371b4302ff OrthancPluginRegisterStorageCommitmentScpCallback()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3660
diff changeset
1776 const std::vector<std::string>& sopInstanceUids,
d8371b4302ff OrthancPluginRegisterStorageCommitmentScpCallback()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3660
diff changeset
1777 const std::string& remoteAet,
d8371b4302ff OrthancPluginRegisterStorageCommitmentScpCallback()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3660
diff changeset
1778 const std::string& calledAet)
3660
f159b731c47d IStorageCommitmentFactory
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3640
diff changeset
1779 {
f159b731c47d IStorageCommitmentFactory
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3640
diff changeset
1780 #if ORTHANC_ENABLE_PLUGINS == 1
f159b731c47d IStorageCommitmentFactory
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3640
diff changeset
1781 if (HasPlugins())
f159b731c47d IStorageCommitmentFactory
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3640
diff changeset
1782 {
3662
d8371b4302ff OrthancPluginRegisterStorageCommitmentScpCallback()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3660
diff changeset
1783 return GetPlugins().CreateStorageCommitment(
d8371b4302ff OrthancPluginRegisterStorageCommitmentScpCallback()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3660
diff changeset
1784 jobId, transactionUid, sopClassUids, sopInstanceUids, remoteAet, calledAet);
3660
f159b731c47d IStorageCommitmentFactory
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3640
diff changeset
1785 }
f159b731c47d IStorageCommitmentFactory
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3640
diff changeset
1786 #endif
f159b731c47d IStorageCommitmentFactory
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3640
diff changeset
1787
f159b731c47d IStorageCommitmentFactory
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3640
diff changeset
1788 return NULL;
f159b731c47d IStorageCommitmentFactory
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3640
diff changeset
1789 }
3894
8f7ad4989fec transcoding to uncompressed transfer syntaxes over DICOM protocol is implemented
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3839
diff changeset
1790
8f7ad4989fec transcoding to uncompressed transfer syntaxes over DICOM protocol is implemented
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3839
diff changeset
1791
3928
4cdc875510d1 ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3913
diff changeset
1792 ImageAccessor* ServerContext::DecodeDicomFrame(const std::string& publicId,
4cdc875510d1 ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3913
diff changeset
1793 unsigned int frameIndex)
4cdc875510d1 ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3913
diff changeset
1794 {
3931
e6606d3ec892 new configuration option: BuiltinDecoderTranscoderOrder
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3930
diff changeset
1795 if (builtinDecoderTranscoderOrder_ == BuiltinDecoderTranscoderOrder_Before)
e6606d3ec892 new configuration option: BuiltinDecoderTranscoderOrder
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3930
diff changeset
1796 {
e6606d3ec892 new configuration option: BuiltinDecoderTranscoderOrder
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3930
diff changeset
1797 // Use Orthanc's built-in decoder, using the cache to speed-up
e6606d3ec892 new configuration option: BuiltinDecoderTranscoderOrder
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3930
diff changeset
1798 // things on multi-frame images
4265
f9eaf14d3d19 Fix decoding sequence if "BuiltinDecoderTranscoderOrder" is "Before"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4218
diff changeset
1799
f9eaf14d3d19 Fix decoding sequence if "BuiltinDecoderTranscoderOrder" is "Before"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4218
diff changeset
1800 std::unique_ptr<ImageAccessor> decoded;
f9eaf14d3d19 Fix decoding sequence if "BuiltinDecoderTranscoderOrder" is "Before"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4218
diff changeset
1801 try
f9eaf14d3d19 Fix decoding sequence if "BuiltinDecoderTranscoderOrder" is "Before"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4218
diff changeset
1802 {
4274
09ed936fd381 cppcheck
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4268
diff changeset
1803 ServerContext::DicomCacheLocker locker(*this, publicId);
4265
f9eaf14d3d19 Fix decoding sequence if "BuiltinDecoderTranscoderOrder" is "Before"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4218
diff changeset
1804 decoded.reset(locker.GetDicom().DecodeFrame(frameIndex));
f9eaf14d3d19 Fix decoding sequence if "BuiltinDecoderTranscoderOrder" is "Before"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4218
diff changeset
1805 }
f9eaf14d3d19 Fix decoding sequence if "BuiltinDecoderTranscoderOrder" is "Before"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4218
diff changeset
1806 catch (OrthancException& e)
f9eaf14d3d19 Fix decoding sequence if "BuiltinDecoderTranscoderOrder" is "Before"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4218
diff changeset
1807 {
f9eaf14d3d19 Fix decoding sequence if "BuiltinDecoderTranscoderOrder" is "Before"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4218
diff changeset
1808 }
f9eaf14d3d19 Fix decoding sequence if "BuiltinDecoderTranscoderOrder" is "Before"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4218
diff changeset
1809
3931
e6606d3ec892 new configuration option: BuiltinDecoderTranscoderOrder
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3930
diff changeset
1810 if (decoded.get() != NULL)
e6606d3ec892 new configuration option: BuiltinDecoderTranscoderOrder
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3930
diff changeset
1811 {
e6606d3ec892 new configuration option: BuiltinDecoderTranscoderOrder
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3930
diff changeset
1812 return decoded.release();
e6606d3ec892 new configuration option: BuiltinDecoderTranscoderOrder
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3930
diff changeset
1813 }
e6606d3ec892 new configuration option: BuiltinDecoderTranscoderOrder
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3930
diff changeset
1814 }
3928
4cdc875510d1 ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3913
diff changeset
1815
4cdc875510d1 ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3913
diff changeset
1816 #if ORTHANC_ENABLE_PLUGINS == 1
4cdc875510d1 ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3913
diff changeset
1817 if (HasPlugins() &&
4cdc875510d1 ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3913
diff changeset
1818 GetPlugins().HasCustomImageDecoder())
4cdc875510d1 ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3913
diff changeset
1819 {
4cdc875510d1 ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3913
diff changeset
1820 // TODO: Store the raw buffer in the DicomCacheLocker
4cdc875510d1 ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3913
diff changeset
1821 std::string dicomContent;
4cdc875510d1 ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3913
diff changeset
1822 ReadDicom(dicomContent, publicId);
4265
f9eaf14d3d19 Fix decoding sequence if "BuiltinDecoderTranscoderOrder" is "Before"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4218
diff changeset
1823
f9eaf14d3d19 Fix decoding sequence if "BuiltinDecoderTranscoderOrder" is "Before"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4218
diff changeset
1824 std::unique_ptr<ImageAccessor> decoded;
f9eaf14d3d19 Fix decoding sequence if "BuiltinDecoderTranscoderOrder" is "Before"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4218
diff changeset
1825 try
f9eaf14d3d19 Fix decoding sequence if "BuiltinDecoderTranscoderOrder" is "Before"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4218
diff changeset
1826 {
f9eaf14d3d19 Fix decoding sequence if "BuiltinDecoderTranscoderOrder" is "Before"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4218
diff changeset
1827 decoded.reset(GetPlugins().Decode(dicomContent.c_str(), dicomContent.size(), frameIndex));
f9eaf14d3d19 Fix decoding sequence if "BuiltinDecoderTranscoderOrder" is "Before"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4218
diff changeset
1828 }
f9eaf14d3d19 Fix decoding sequence if "BuiltinDecoderTranscoderOrder" is "Before"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4218
diff changeset
1829 catch (OrthancException& e)
f9eaf14d3d19 Fix decoding sequence if "BuiltinDecoderTranscoderOrder" is "Before"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4218
diff changeset
1830 {
f9eaf14d3d19 Fix decoding sequence if "BuiltinDecoderTranscoderOrder" is "Before"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4218
diff changeset
1831 }
f9eaf14d3d19 Fix decoding sequence if "BuiltinDecoderTranscoderOrder" is "Before"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4218
diff changeset
1832
3928
4cdc875510d1 ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3913
diff changeset
1833 if (decoded.get() != NULL)
4cdc875510d1 ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3913
diff changeset
1834 {
4cdc875510d1 ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3913
diff changeset
1835 return decoded.release();
4cdc875510d1 ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3913
diff changeset
1836 }
3931
e6606d3ec892 new configuration option: BuiltinDecoderTranscoderOrder
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3930
diff changeset
1837 else if (builtinDecoderTranscoderOrder_ == BuiltinDecoderTranscoderOrder_After)
3928
4cdc875510d1 ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3913
diff changeset
1838 {
4cdc875510d1 ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3913
diff changeset
1839 LOG(INFO) << "The installed image decoding plugins cannot handle an image, "
3930
b99acc213937 transcoder plugins and GDCM transcoding are working
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3928
diff changeset
1840 << "fallback to the built-in DCMTK decoder";
3928
4cdc875510d1 ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3913
diff changeset
1841 }
4cdc875510d1 ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3913
diff changeset
1842 }
4cdc875510d1 ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3913
diff changeset
1843 #endif
4cdc875510d1 ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3913
diff changeset
1844
3931
e6606d3ec892 new configuration option: BuiltinDecoderTranscoderOrder
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3930
diff changeset
1845 if (builtinDecoderTranscoderOrder_ == BuiltinDecoderTranscoderOrder_After)
3928
4cdc875510d1 ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3913
diff changeset
1846 {
4cdc875510d1 ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3913
diff changeset
1847 ServerContext::DicomCacheLocker locker(*this, publicId);
4203
4d42408da117 improving const-correctness in ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4196
diff changeset
1848 return locker.GetDicom().DecodeFrame(frameIndex);
3928
4cdc875510d1 ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3913
diff changeset
1849 }
3931
e6606d3ec892 new configuration option: BuiltinDecoderTranscoderOrder
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3930
diff changeset
1850 else
e6606d3ec892 new configuration option: BuiltinDecoderTranscoderOrder
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3930
diff changeset
1851 {
e6606d3ec892 new configuration option: BuiltinDecoderTranscoderOrder
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3930
diff changeset
1852 return NULL; // Built-in decoder is disabled
e6606d3ec892 new configuration option: BuiltinDecoderTranscoderOrder
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3930
diff changeset
1853 }
3928
4cdc875510d1 ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3913
diff changeset
1854 }
4cdc875510d1 ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3913
diff changeset
1855
4cdc875510d1 ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3913
diff changeset
1856
4cdc875510d1 ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3913
diff changeset
1857 ImageAccessor* ServerContext::DecodeDicomFrame(const DicomInstanceToStore& dicom,
4cdc875510d1 ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3913
diff changeset
1858 unsigned int frameIndex)
4cdc875510d1 ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3913
diff changeset
1859 {
3931
e6606d3ec892 new configuration option: BuiltinDecoderTranscoderOrder
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3930
diff changeset
1860 if (builtinDecoderTranscoderOrder_ == BuiltinDecoderTranscoderOrder_Before)
e6606d3ec892 new configuration option: BuiltinDecoderTranscoderOrder
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3930
diff changeset
1861 {
4265
f9eaf14d3d19 Fix decoding sequence if "BuiltinDecoderTranscoderOrder" is "Before"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4218
diff changeset
1862 std::unique_ptr<ImageAccessor> decoded;
f9eaf14d3d19 Fix decoding sequence if "BuiltinDecoderTranscoderOrder" is "Before"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4218
diff changeset
1863 try
f9eaf14d3d19 Fix decoding sequence if "BuiltinDecoderTranscoderOrder" is "Before"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4218
diff changeset
1864 {
4507
b4c58795f3a8 widening the use of DicomTransferSyntax enum
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4506
diff changeset
1865 decoded.reset(dicom.DecodeFrame(frameIndex));
4265
f9eaf14d3d19 Fix decoding sequence if "BuiltinDecoderTranscoderOrder" is "Before"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4218
diff changeset
1866 }
f9eaf14d3d19 Fix decoding sequence if "BuiltinDecoderTranscoderOrder" is "Before"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4218
diff changeset
1867 catch (OrthancException& e)
f9eaf14d3d19 Fix decoding sequence if "BuiltinDecoderTranscoderOrder" is "Before"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4218
diff changeset
1868 {
f9eaf14d3d19 Fix decoding sequence if "BuiltinDecoderTranscoderOrder" is "Before"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4218
diff changeset
1869 }
f9eaf14d3d19 Fix decoding sequence if "BuiltinDecoderTranscoderOrder" is "Before"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4218
diff changeset
1870
3931
e6606d3ec892 new configuration option: BuiltinDecoderTranscoderOrder
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3930
diff changeset
1871 if (decoded.get() != NULL)
e6606d3ec892 new configuration option: BuiltinDecoderTranscoderOrder
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3930
diff changeset
1872 {
e6606d3ec892 new configuration option: BuiltinDecoderTranscoderOrder
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3930
diff changeset
1873 return decoded.release();
e6606d3ec892 new configuration option: BuiltinDecoderTranscoderOrder
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3930
diff changeset
1874 }
e6606d3ec892 new configuration option: BuiltinDecoderTranscoderOrder
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3930
diff changeset
1875 }
3928
4cdc875510d1 ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3913
diff changeset
1876
4cdc875510d1 ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3913
diff changeset
1877 #if ORTHANC_ENABLE_PLUGINS == 1
4cdc875510d1 ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3913
diff changeset
1878 if (HasPlugins() &&
4cdc875510d1 ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3913
diff changeset
1879 GetPlugins().HasCustomImageDecoder())
4cdc875510d1 ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3913
diff changeset
1880 {
4265
f9eaf14d3d19 Fix decoding sequence if "BuiltinDecoderTranscoderOrder" is "Before"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4218
diff changeset
1881 std::unique_ptr<ImageAccessor> decoded;
f9eaf14d3d19 Fix decoding sequence if "BuiltinDecoderTranscoderOrder" is "Before"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4218
diff changeset
1882 try
f9eaf14d3d19 Fix decoding sequence if "BuiltinDecoderTranscoderOrder" is "Before"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4218
diff changeset
1883 {
f9eaf14d3d19 Fix decoding sequence if "BuiltinDecoderTranscoderOrder" is "Before"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4218
diff changeset
1884 decoded.reset(GetPlugins().Decode(dicom.GetBufferData(), dicom.GetBufferSize(), frameIndex));
f9eaf14d3d19 Fix decoding sequence if "BuiltinDecoderTranscoderOrder" is "Before"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4218
diff changeset
1885 }
f9eaf14d3d19 Fix decoding sequence if "BuiltinDecoderTranscoderOrder" is "Before"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4218
diff changeset
1886 catch (OrthancException& e)
f9eaf14d3d19 Fix decoding sequence if "BuiltinDecoderTranscoderOrder" is "Before"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4218
diff changeset
1887 {
f9eaf14d3d19 Fix decoding sequence if "BuiltinDecoderTranscoderOrder" is "Before"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4218
diff changeset
1888 }
f9eaf14d3d19 Fix decoding sequence if "BuiltinDecoderTranscoderOrder" is "Before"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4218
diff changeset
1889
3928
4cdc875510d1 ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3913
diff changeset
1890 if (decoded.get() != NULL)
4cdc875510d1 ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3913
diff changeset
1891 {
4cdc875510d1 ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3913
diff changeset
1892 return decoded.release();
4cdc875510d1 ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3913
diff changeset
1893 }
3931
e6606d3ec892 new configuration option: BuiltinDecoderTranscoderOrder
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3930
diff changeset
1894 else if (builtinDecoderTranscoderOrder_ == BuiltinDecoderTranscoderOrder_After)
3928
4cdc875510d1 ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3913
diff changeset
1895 {
4cdc875510d1 ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3913
diff changeset
1896 LOG(INFO) << "The installed image decoding plugins cannot handle an image, "
3930
b99acc213937 transcoder plugins and GDCM transcoding are working
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3928
diff changeset
1897 << "fallback to the built-in DCMTK decoder";
3928
4cdc875510d1 ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3913
diff changeset
1898 }
4cdc875510d1 ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3913
diff changeset
1899 }
4cdc875510d1 ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3913
diff changeset
1900 #endif
4cdc875510d1 ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3913
diff changeset
1901
3931
e6606d3ec892 new configuration option: BuiltinDecoderTranscoderOrder
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3930
diff changeset
1902 if (builtinDecoderTranscoderOrder_ == BuiltinDecoderTranscoderOrder_After)
e6606d3ec892 new configuration option: BuiltinDecoderTranscoderOrder
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3930
diff changeset
1903 {
4507
b4c58795f3a8 widening the use of DicomTransferSyntax enum
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4506
diff changeset
1904 return dicom.DecodeFrame(frameIndex);
3931
e6606d3ec892 new configuration option: BuiltinDecoderTranscoderOrder
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3930
diff changeset
1905 }
e6606d3ec892 new configuration option: BuiltinDecoderTranscoderOrder
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3930
diff changeset
1906 else
e6606d3ec892 new configuration option: BuiltinDecoderTranscoderOrder
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3930
diff changeset
1907 {
e6606d3ec892 new configuration option: BuiltinDecoderTranscoderOrder
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3930
diff changeset
1908 return NULL;
e6606d3ec892 new configuration option: BuiltinDecoderTranscoderOrder
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3930
diff changeset
1909 }
3928
4cdc875510d1 ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3913
diff changeset
1910 }
4cdc875510d1 ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3913
diff changeset
1911
4cdc875510d1 ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3913
diff changeset
1912
3980
e42f5445d20d Fix decoding of DICOM images for plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3951
diff changeset
1913 ImageAccessor* ServerContext::DecodeDicomFrame(const void* dicom,
e42f5445d20d Fix decoding of DICOM images for plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3951
diff changeset
1914 size_t size,
e42f5445d20d Fix decoding of DICOM images for plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3951
diff changeset
1915 unsigned int frameIndex)
e42f5445d20d Fix decoding of DICOM images for plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3951
diff changeset
1916 {
4508
8f9090b137f1 Optimization in C-STORE SCP by avoiding an unnecessary DICOM parsing
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4507
diff changeset
1917 std::unique_ptr<DicomInstanceToStore> instance(DicomInstanceToStore::CreateFromBuffer(dicom, size));
8f9090b137f1 Optimization in C-STORE SCP by avoiding an unnecessary DICOM parsing
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4507
diff changeset
1918 return DecodeDicomFrame(*instance, frameIndex);
3980
e42f5445d20d Fix decoding of DICOM images for plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3951
diff changeset
1919 }
e42f5445d20d Fix decoding of DICOM images for plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3951
diff changeset
1920
e42f5445d20d Fix decoding of DICOM images for plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3951
diff changeset
1921
3894
8f7ad4989fec transcoding to uncompressed transfer syntaxes over DICOM protocol is implemented
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3839
diff changeset
1922 void ServerContext::StoreWithTranscoding(std::string& sopClassUid,
8f7ad4989fec transcoding to uncompressed transfer syntaxes over DICOM protocol is implemented
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3839
diff changeset
1923 std::string& sopInstanceUid,
8f7ad4989fec transcoding to uncompressed transfer syntaxes over DICOM protocol is implemented
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3839
diff changeset
1924 DicomStoreUserConnection& connection,
8f7ad4989fec transcoding to uncompressed transfer syntaxes over DICOM protocol is implemented
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3839
diff changeset
1925 const std::string& dicom,
8f7ad4989fec transcoding to uncompressed transfer syntaxes over DICOM protocol is implemented
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3839
diff changeset
1926 bool hasMoveOriginator,
8f7ad4989fec transcoding to uncompressed transfer syntaxes over DICOM protocol is implemented
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3839
diff changeset
1927 const std::string& moveOriginatorAet,
8f7ad4989fec transcoding to uncompressed transfer syntaxes over DICOM protocol is implemented
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3839
diff changeset
1928 uint16_t moveOriginatorId)
8f7ad4989fec transcoding to uncompressed transfer syntaxes over DICOM protocol is implemented
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3839
diff changeset
1929 {
8f7ad4989fec transcoding to uncompressed transfer syntaxes over DICOM protocol is implemented
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3839
diff changeset
1930 const void* data = dicom.empty() ? NULL : dicom.c_str();
8f7ad4989fec transcoding to uncompressed transfer syntaxes over DICOM protocol is implemented
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3839
diff changeset
1931
3911
0ef7f4528be2 renamed option TranscodingEnabled to TranscodeDicomProtocol
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3910
diff changeset
1932 if (!transcodeDicomProtocol_ ||
3894
8f7ad4989fec transcoding to uncompressed transfer syntaxes over DICOM protocol is implemented
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3839
diff changeset
1933 !connection.GetParameters().GetRemoteModality().IsTranscodingAllowed())
8f7ad4989fec transcoding to uncompressed transfer syntaxes over DICOM protocol is implemented
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3839
diff changeset
1934 {
8f7ad4989fec transcoding to uncompressed transfer syntaxes over DICOM protocol is implemented
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3839
diff changeset
1935 connection.Store(sopClassUid, sopInstanceUid, data, dicom.size(),
8f7ad4989fec transcoding to uncompressed transfer syntaxes over DICOM protocol is implemented
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3839
diff changeset
1936 hasMoveOriginator, moveOriginatorAet, moveOriginatorId);
8f7ad4989fec transcoding to uncompressed transfer syntaxes over DICOM protocol is implemented
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3839
diff changeset
1937 }
8f7ad4989fec transcoding to uncompressed transfer syntaxes over DICOM protocol is implemented
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3839
diff changeset
1938 else
8f7ad4989fec transcoding to uncompressed transfer syntaxes over DICOM protocol is implemented
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3839
diff changeset
1939 {
4465
fe774d8e904b New configuration option: "DicomScuPreferredTransferSyntax" to control transcoding in C-STORE SCU
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4460
diff changeset
1940 connection.Transcode(sopClassUid, sopInstanceUid, *this, data, dicom.size(), preferredTransferSyntax_,
3912
7610af1532c3 prototyping automated transcoding of incoming DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3911
diff changeset
1941 hasMoveOriginator, moveOriginatorAet, moveOriginatorId);
3894
8f7ad4989fec transcoding to uncompressed transfer syntaxes over DICOM protocol is implemented
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3839
diff changeset
1942 }
8f7ad4989fec transcoding to uncompressed transfer syntaxes over DICOM protocol is implemented
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3839
diff changeset
1943 }
3930
b99acc213937 transcoder plugins and GDCM transcoding are working
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3928
diff changeset
1944
b99acc213937 transcoder plugins and GDCM transcoding are working
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3928
diff changeset
1945
3944
aae045f802f4 preparing simplified interface for IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3941
diff changeset
1946 bool ServerContext::Transcode(DicomImage& target,
aae045f802f4 preparing simplified interface for IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3941
diff changeset
1947 DicomImage& source /* in, "GetParsed()" possibly modified */,
aae045f802f4 preparing simplified interface for IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3941
diff changeset
1948 const std::set<DicomTransferSyntax>& allowedSyntaxes,
aae045f802f4 preparing simplified interface for IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3941
diff changeset
1949 bool allowNewSopInstanceUid)
aae045f802f4 preparing simplified interface for IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3941
diff changeset
1950 {
aae045f802f4 preparing simplified interface for IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3941
diff changeset
1951 if (builtinDecoderTranscoderOrder_ == BuiltinDecoderTranscoderOrder_Before)
aae045f802f4 preparing simplified interface for IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3941
diff changeset
1952 {
3951
5fe8c6d3212e removed useless information "hasSopInstanceUidChanged"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3947
diff changeset
1953 if (dcmtkTranscoder_->Transcode(target, source, allowedSyntaxes, allowNewSopInstanceUid))
3944
aae045f802f4 preparing simplified interface for IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3941
diff changeset
1954 {
aae045f802f4 preparing simplified interface for IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3941
diff changeset
1955 return true;
aae045f802f4 preparing simplified interface for IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3941
diff changeset
1956 }
aae045f802f4 preparing simplified interface for IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3941
diff changeset
1957 }
aae045f802f4 preparing simplified interface for IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3941
diff changeset
1958
aae045f802f4 preparing simplified interface for IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3941
diff changeset
1959 #if ORTHANC_ENABLE_PLUGINS == 1
aae045f802f4 preparing simplified interface for IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3941
diff changeset
1960 if (HasPlugins() &&
aae045f802f4 preparing simplified interface for IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3941
diff changeset
1961 GetPlugins().HasCustomTranscoder())
aae045f802f4 preparing simplified interface for IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3941
diff changeset
1962 {
3951
5fe8c6d3212e removed useless information "hasSopInstanceUidChanged"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3947
diff changeset
1963 if (GetPlugins().Transcode(target, source, allowedSyntaxes, allowNewSopInstanceUid))
3944
aae045f802f4 preparing simplified interface for IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3941
diff changeset
1964 {
aae045f802f4 preparing simplified interface for IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3941
diff changeset
1965 return true;
aae045f802f4 preparing simplified interface for IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3941
diff changeset
1966 }
aae045f802f4 preparing simplified interface for IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3941
diff changeset
1967 else if (builtinDecoderTranscoderOrder_ == BuiltinDecoderTranscoderOrder_After)
aae045f802f4 preparing simplified interface for IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3941
diff changeset
1968 {
aae045f802f4 preparing simplified interface for IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3941
diff changeset
1969 LOG(INFO) << "The installed transcoding plugins cannot handle an image, "
aae045f802f4 preparing simplified interface for IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3941
diff changeset
1970 << "fallback to the built-in DCMTK transcoder";
aae045f802f4 preparing simplified interface for IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3941
diff changeset
1971 }
aae045f802f4 preparing simplified interface for IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3941
diff changeset
1972 }
aae045f802f4 preparing simplified interface for IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3941
diff changeset
1973 #endif
aae045f802f4 preparing simplified interface for IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3941
diff changeset
1974
aae045f802f4 preparing simplified interface for IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3941
diff changeset
1975 if (builtinDecoderTranscoderOrder_ == BuiltinDecoderTranscoderOrder_After)
aae045f802f4 preparing simplified interface for IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3941
diff changeset
1976 {
3951
5fe8c6d3212e removed useless information "hasSopInstanceUidChanged"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3947
diff changeset
1977 return dcmtkTranscoder_->Transcode(target, source, allowedSyntaxes, allowNewSopInstanceUid);
3944
aae045f802f4 preparing simplified interface for IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3941
diff changeset
1978 }
aae045f802f4 preparing simplified interface for IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3941
diff changeset
1979 else
aae045f802f4 preparing simplified interface for IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3941
diff changeset
1980 {
aae045f802f4 preparing simplified interface for IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3941
diff changeset
1981 return false;
aae045f802f4 preparing simplified interface for IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3941
diff changeset
1982 }
aae045f802f4 preparing simplified interface for IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3941
diff changeset
1983 }
4375
208029732d51 New config option "DeidentifyDimseQueryLogs"
Mark Poscablo <Mark.Poscablo@varian.com>
parents: 4274
diff changeset
1984
4376
b002f9abe802 review of changeset 4375:208029732d51
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4375
diff changeset
1985 const std::string& ServerContext::GetDeidentifiedContent(const DicomElement &element) const
4375
208029732d51 New config option "DeidentifyDimseQueryLogs"
Mark Poscablo <Mark.Poscablo@varian.com>
parents: 4274
diff changeset
1986 {
208029732d51 New config option "DeidentifyDimseQueryLogs"
Mark Poscablo <Mark.Poscablo@varian.com>
parents: 4274
diff changeset
1987 static const std::string redactedContent = "*** POTENTIAL PHI ***";
208029732d51 New config option "DeidentifyDimseQueryLogs"
Mark Poscablo <Mark.Poscablo@varian.com>
parents: 4274
diff changeset
1988
208029732d51 New config option "DeidentifyDimseQueryLogs"
Mark Poscablo <Mark.Poscablo@varian.com>
parents: 4274
diff changeset
1989 const DicomTag& tag = element.GetTag();
4789
51ec061516c9 Fix handling of option "DeidentifyLogs", notably for tags (0010,0010) and (0010,0020)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4752
diff changeset
1990 if (deidentifyLogs_ &&
51ec061516c9 Fix handling of option "DeidentifyLogs", notably for tags (0010,0010) and (0010,0020)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4752
diff changeset
1991 !element.GetValue().GetContent().empty() &&
51ec061516c9 Fix handling of option "DeidentifyLogs", notably for tags (0010,0010) and (0010,0020)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4752
diff changeset
1992 logsDeidentifierRules_.IsAlteredTag(tag))
4375
208029732d51 New config option "DeidentifyDimseQueryLogs"
Mark Poscablo <Mark.Poscablo@varian.com>
parents: 4274
diff changeset
1993 {
208029732d51 New config option "DeidentifyDimseQueryLogs"
Mark Poscablo <Mark.Poscablo@varian.com>
parents: 4274
diff changeset
1994 return redactedContent;
208029732d51 New config option "DeidentifyDimseQueryLogs"
Mark Poscablo <Mark.Poscablo@varian.com>
parents: 4274
diff changeset
1995 }
208029732d51 New config option "DeidentifyDimseQueryLogs"
Mark Poscablo <Mark.Poscablo@varian.com>
parents: 4274
diff changeset
1996 else
208029732d51 New config option "DeidentifyDimseQueryLogs"
Mark Poscablo <Mark.Poscablo@varian.com>
parents: 4274
diff changeset
1997 {
208029732d51 New config option "DeidentifyDimseQueryLogs"
Mark Poscablo <Mark.Poscablo@varian.com>
parents: 4274
diff changeset
1998 return element.GetValue().GetContent();
208029732d51 New config option "DeidentifyDimseQueryLogs"
Mark Poscablo <Mark.Poscablo@varian.com>
parents: 4274
diff changeset
1999 }
208029732d51 New config option "DeidentifyDimseQueryLogs"
Mark Poscablo <Mark.Poscablo@varian.com>
parents: 4274
diff changeset
2000 }
4473
68f52897c119 new URIs: /tools/accepted-transfer-syntaxes and /tools/unknown-sop-class-accepted to replace Lua callbacks for transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4465
diff changeset
2001
68f52897c119 new URIs: /tools/accepted-transfer-syntaxes and /tools/unknown-sop-class-accepted to replace Lua callbacks for transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4465
diff changeset
2002
68f52897c119 new URIs: /tools/accepted-transfer-syntaxes and /tools/unknown-sop-class-accepted to replace Lua callbacks for transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4465
diff changeset
2003 void ServerContext::GetAcceptedTransferSyntaxes(std::set<DicomTransferSyntax>& syntaxes)
68f52897c119 new URIs: /tools/accepted-transfer-syntaxes and /tools/unknown-sop-class-accepted to replace Lua callbacks for transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4465
diff changeset
2004 {
68f52897c119 new URIs: /tools/accepted-transfer-syntaxes and /tools/unknown-sop-class-accepted to replace Lua callbacks for transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4465
diff changeset
2005 boost::mutex::scoped_lock lock(dynamicOptionsMutex_);
68f52897c119 new URIs: /tools/accepted-transfer-syntaxes and /tools/unknown-sop-class-accepted to replace Lua callbacks for transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4465
diff changeset
2006 syntaxes = acceptedTransferSyntaxes_;
68f52897c119 new URIs: /tools/accepted-transfer-syntaxes and /tools/unknown-sop-class-accepted to replace Lua callbacks for transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4465
diff changeset
2007 }
68f52897c119 new URIs: /tools/accepted-transfer-syntaxes and /tools/unknown-sop-class-accepted to replace Lua callbacks for transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4465
diff changeset
2008
68f52897c119 new URIs: /tools/accepted-transfer-syntaxes and /tools/unknown-sop-class-accepted to replace Lua callbacks for transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4465
diff changeset
2009
68f52897c119 new URIs: /tools/accepted-transfer-syntaxes and /tools/unknown-sop-class-accepted to replace Lua callbacks for transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4465
diff changeset
2010 void ServerContext::SetAcceptedTransferSyntaxes(const std::set<DicomTransferSyntax>& syntaxes)
68f52897c119 new URIs: /tools/accepted-transfer-syntaxes and /tools/unknown-sop-class-accepted to replace Lua callbacks for transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4465
diff changeset
2011 {
68f52897c119 new URIs: /tools/accepted-transfer-syntaxes and /tools/unknown-sop-class-accepted to replace Lua callbacks for transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4465
diff changeset
2012 boost::mutex::scoped_lock lock(dynamicOptionsMutex_);
68f52897c119 new URIs: /tools/accepted-transfer-syntaxes and /tools/unknown-sop-class-accepted to replace Lua callbacks for transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4465
diff changeset
2013 acceptedTransferSyntaxes_ = syntaxes;
68f52897c119 new URIs: /tools/accepted-transfer-syntaxes and /tools/unknown-sop-class-accepted to replace Lua callbacks for transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4465
diff changeset
2014 }
68f52897c119 new URIs: /tools/accepted-transfer-syntaxes and /tools/unknown-sop-class-accepted to replace Lua callbacks for transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4465
diff changeset
2015
68f52897c119 new URIs: /tools/accepted-transfer-syntaxes and /tools/unknown-sop-class-accepted to replace Lua callbacks for transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4465
diff changeset
2016
68f52897c119 new URIs: /tools/accepted-transfer-syntaxes and /tools/unknown-sop-class-accepted to replace Lua callbacks for transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4465
diff changeset
2017 bool ServerContext::IsUnknownSopClassAccepted()
68f52897c119 new URIs: /tools/accepted-transfer-syntaxes and /tools/unknown-sop-class-accepted to replace Lua callbacks for transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4465
diff changeset
2018 {
68f52897c119 new URIs: /tools/accepted-transfer-syntaxes and /tools/unknown-sop-class-accepted to replace Lua callbacks for transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4465
diff changeset
2019 boost::mutex::scoped_lock lock(dynamicOptionsMutex_);
68f52897c119 new URIs: /tools/accepted-transfer-syntaxes and /tools/unknown-sop-class-accepted to replace Lua callbacks for transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4465
diff changeset
2020 return isUnknownSopClassAccepted_;
68f52897c119 new URIs: /tools/accepted-transfer-syntaxes and /tools/unknown-sop-class-accepted to replace Lua callbacks for transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4465
diff changeset
2021 }
68f52897c119 new URIs: /tools/accepted-transfer-syntaxes and /tools/unknown-sop-class-accepted to replace Lua callbacks for transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4465
diff changeset
2022
68f52897c119 new URIs: /tools/accepted-transfer-syntaxes and /tools/unknown-sop-class-accepted to replace Lua callbacks for transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4465
diff changeset
2023
68f52897c119 new URIs: /tools/accepted-transfer-syntaxes and /tools/unknown-sop-class-accepted to replace Lua callbacks for transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4465
diff changeset
2024 void ServerContext::SetUnknownSopClassAccepted(bool accepted)
68f52897c119 new URIs: /tools/accepted-transfer-syntaxes and /tools/unknown-sop-class-accepted to replace Lua callbacks for transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4465
diff changeset
2025 {
68f52897c119 new URIs: /tools/accepted-transfer-syntaxes and /tools/unknown-sop-class-accepted to replace Lua callbacks for transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4465
diff changeset
2026 boost::mutex::scoped_lock lock(dynamicOptionsMutex_);
68f52897c119 new URIs: /tools/accepted-transfer-syntaxes and /tools/unknown-sop-class-accepted to replace Lua callbacks for transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4465
diff changeset
2027 isUnknownSopClassAccepted_ = accepted;
68f52897c119 new URIs: /tools/accepted-transfer-syntaxes and /tools/unknown-sop-class-accepted to replace Lua callbacks for transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4465
diff changeset
2028 }
224
4eb0c7ce86c9 refactoring for store
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
2029 }