Mercurial > hg > orthanc
annotate OrthancServer/FromDcmtkBridge.h @ 2126:03b065778fc3
cleaning up
| author | Sebastien Jodogne <s.jodogne@gmail.com> |
|---|---|
| date | Mon, 07 Nov 2016 13:47:21 +0100 |
| parents | b9bd52c72ba2 |
| children | 9329ba17a069 |
| rev | line source |
|---|---|
| 0 | 1 /** |
| 62 | 2 * Orthanc - A Lightweight, RESTful DICOM Store |
| 1900 | 3 * Copyright (C) 2012-2016 Sebastien Jodogne, Medical Physics |
|
1288
6e7e5ed91c2d
upgrade to year 2015
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1004
diff
changeset
|
4 * Department, University Hospital of Liege, Belgium |
| 0 | 5 * |
| 6 * This program is free software: you can redistribute it and/or | |
| 7 * modify it under the terms of the GNU General Public License as | |
| 8 * published by the Free Software Foundation, either version 3 of the | |
| 9 * License, or (at your option) any later version. | |
| 136 | 10 * |
| 11 * In addition, as a special exception, the copyright holders of this | |
| 12 * program give permission to link the code of its release with the | |
| 13 * OpenSSL project's "OpenSSL" library (or with modified versions of it | |
| 14 * that use the same license as the "OpenSSL" library), and distribute | |
| 15 * the linked executables. You must obey the GNU General Public License | |
| 16 * in all respects for all of the code used other than "OpenSSL". If you | |
| 17 * modify file(s) with this exception, you may extend this exception to | |
| 18 * your version of the file(s), but you are not obligated to do so. If | |
| 19 * you do not wish to do so, delete this exception statement from your | |
| 20 * version. If you delete this exception statement from all source files | |
| 21 * in the program, then also delete it here. | |
| 0 | 22 * |
| 23 * This program is distributed in the hope that it will be useful, but | |
| 24 * WITHOUT ANY WARRANTY; without even the implied warranty of | |
| 25 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU | |
| 26 * General Public License for more details. | |
| 27 * | |
| 28 * You should have received a copy of the GNU General Public License | |
| 29 * along with this program. If not, see <http://www.gnu.org/licenses/>. | |
| 30 **/ | |
| 31 | |
| 32 | |
| 33 #pragma once | |
| 34 | |
| 789 | 35 #include "ServerEnumerations.h" |
| 2125 | 36 #include "OrthancInitialization.h" |
|
285
4031f73fe0e4
access to the raw dicom tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
176
diff
changeset
|
37 |
|
2115
a657f7772e69
Handling of private tags/creators in the "Dictionary" configuration option
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2006
diff
changeset
|
38 #include "../Core/DicomFormat/DicomElement.h" |
| 791 | 39 #include "../Core/DicomFormat/DicomMap.h" |
| 40 | |
| 0 | 41 #include <dcmtk/dcmdata/dcdatset.h> |
|
1831
3ae2ff249675
"/instances/.../header" to get the meta information (header) of the DICOM instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1818
diff
changeset
|
42 #include <dcmtk/dcmdata/dcmetinf.h> |
|
1924
6c73df12ca51
New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1900
diff
changeset
|
43 #include <dcmtk/dcmdata/dcpixseq.h> |
|
1935
e251606c1433
FromDcmtkBridge::LoadFromMemoryBuffer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1934
diff
changeset
|
44 #include <dcmtk/dcmdata/dcfilefo.h> |
| 0 | 45 #include <json/json.h> |
| 46 | |
| 2126 | 47 #if ORTHANC_BUILD_UNIT_TESTS == 1 |
| 48 # include <gtest/gtest_prod.h> | |
| 49 #endif | |
| 50 | |
| 51 | |
| 62 | 52 namespace Orthanc |
| 0 | 53 { |
| 2125 | 54 class FromDcmtkBridge : public boost::noncopyable |
| 0 | 55 { |
| 2126 | 56 #if ORTHANC_BUILD_UNIT_TESTS == 1 |
| 57 FRIEND_TEST(FromDcmtkBridge, FromJson); | |
| 58 #endif | |
| 59 | |
| 2125 | 60 private: |
| 61 FromDcmtkBridge(); // Pure static class | |
| 62 | |
| 63 static void ExtractDicomSummary(DicomMap& target, | |
| 64 DcmItem& dataset, | |
| 65 unsigned int maxStringLength, | |
| 66 Encoding defaultEncoding); | |
| 67 | |
| 2126 | 68 static void DatasetToJson(Json::Value& parent, |
| 69 DcmItem& item, | |
| 70 DicomToJsonFormat format, | |
| 71 DicomToJsonFlags flags, | |
| 72 unsigned int maxStringLength, | |
| 73 Encoding encoding); | |
| 74 | |
| 75 static void ElementToJson(Json::Value& parent, | |
| 76 DcmElement& element, | |
| 77 DicomToJsonFormat format, | |
| 78 DicomToJsonFlags flags, | |
| 79 unsigned int maxStringLength, | |
| 80 Encoding dicomEncoding); | |
| 81 | |
| 0 | 82 public: |
| 1656 | 83 static void InitializeDictionary(); |
| 84 | |
|
1657
5360cdba70d8
New function "OrthancPluginRegisterDictionaryTag()" to declare DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1656
diff
changeset
|
85 static void RegisterDictionaryTag(const DicomTag& tag, |
|
2006
6301bbcbcaed
more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
86 ValueRepresentation vr, |
|
1657
5360cdba70d8
New function "OrthancPluginRegisterDictionaryTag()" to declare DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1656
diff
changeset
|
87 const std::string& name, |
|
5360cdba70d8
New function "OrthancPluginRegisterDictionaryTag()" to declare DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1656
diff
changeset
|
88 unsigned int minMultiplicity, |
|
2115
a657f7772e69
Handling of private tags/creators in the "Dictionary" configuration option
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2006
diff
changeset
|
89 unsigned int maxMultiplicity, |
|
a657f7772e69
Handling of private tags/creators in the "Dictionary" configuration option
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2006
diff
changeset
|
90 const std::string& privateCreator); |
|
1657
5360cdba70d8
New function "OrthancPluginRegisterDictionaryTag()" to declare DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1656
diff
changeset
|
91 |
| 1936 | 92 static Encoding DetectEncoding(DcmItem& dataset, |
|
1928
84c7eaeb5244
Configuration::GetDefaultEncoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1924
diff
changeset
|
93 Encoding defaultEncoding); |
|
956
2fd5a163776d
primitives for proper encoding handling
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
874
diff
changeset
|
94 |
| 2125 | 95 static void ExtractDicomSummary(DicomMap& target, |
| 96 DcmItem& dataset) | |
| 97 { | |
| 98 ExtractDicomSummary(target, dataset, ORTHANC_MAXIMUM_TAG_LENGTH, Configuration::GetDefaultEncoding()); | |
| 99 } | |
| 0 | 100 |
|
991
2f76b92addd4
keep private tags during anonymization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
956
diff
changeset
|
101 static DicomTag Convert(const DcmTag& tag); |
|
2f76b92addd4
keep private tags during anonymization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
956
diff
changeset
|
102 |
| 0 | 103 static DicomTag GetTag(const DcmElement& element); |
| 104 | |
|
1655
e40fd0d925c5
/tools/create-dicom can create tags with unknown VR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1417
diff
changeset
|
105 static bool IsUnknownTag(const DicomTag& tag); |
|
e40fd0d925c5
/tools/create-dicom can create tags with unknown VR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1417
diff
changeset
|
106 |
|
956
2fd5a163776d
primitives for proper encoding handling
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
874
diff
changeset
|
107 static DicomValue* ConvertLeafElement(DcmElement& element, |
|
1736
b953c6eef28d
ToJson: IncludePrivateTags and IncludeUnknownTags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1735
diff
changeset
|
108 DicomToJsonFlags flags, |
|
1929
cda5b0ab4ce5
ORTHANC_MAXIMUM_TAG_LENGTH made explicit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1928
diff
changeset
|
109 unsigned int maxStringLength, |
|
956
2fd5a163776d
primitives for proper encoding handling
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
874
diff
changeset
|
110 Encoding encoding); |
| 0 | 111 |
| 2126 | 112 static void ExtractDicomAsJson(Json::Value& target, |
| 113 DcmDataset& dataset, | |
| 114 DicomToJsonFormat format, | |
| 115 DicomToJsonFlags flags, | |
| 116 unsigned int maxStringLength); | |
| 1690 | 117 |
| 2126 | 118 static void ExtractHeaderAsJson(Json::Value& target, |
| 119 DcmMetaInfo& header, | |
| 120 DicomToJsonFormat format, | |
| 121 DicomToJsonFlags flags, | |
| 122 unsigned int maxStringLength); | |
|
1831
3ae2ff249675
"/instances/.../header" to get the meta information (header) of the DICOM instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1818
diff
changeset
|
123 |
|
2115
a657f7772e69
Handling of private tags/creators in the "Dictionary" configuration option
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2006
diff
changeset
|
124 static std::string GetTagName(const DicomTag& tag, |
|
a657f7772e69
Handling of private tags/creators in the "Dictionary" configuration option
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2006
diff
changeset
|
125 const std::string& privateCreator); |
|
a657f7772e69
Handling of private tags/creators in the "Dictionary" configuration option
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2006
diff
changeset
|
126 |
|
a657f7772e69
Handling of private tags/creators in the "Dictionary" configuration option
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2006
diff
changeset
|
127 static std::string GetTagName(const DcmElement& element); |
|
a657f7772e69
Handling of private tags/creators in the "Dictionary" configuration option
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2006
diff
changeset
|
128 |
|
a657f7772e69
Handling of private tags/creators in the "Dictionary" configuration option
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2006
diff
changeset
|
129 static std::string GetTagName(const DicomElement& element) |
|
a657f7772e69
Handling of private tags/creators in the "Dictionary" configuration option
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2006
diff
changeset
|
130 { |
|
a657f7772e69
Handling of private tags/creators in the "Dictionary" configuration option
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2006
diff
changeset
|
131 return GetTagName(element.GetTag(), ""); |
|
a657f7772e69
Handling of private tags/creators in the "Dictionary" configuration option
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2006
diff
changeset
|
132 } |
| 0 | 133 |
| 304 | 134 static DicomTag ParseTag(const char* name); |
| 0 | 135 |
| 304 | 136 static DicomTag ParseTag(const std::string& name) |
| 0 | 137 { |
| 304 | 138 return ParseTag(name.c_str()); |
| 0 | 139 } |
| 140 | |
| 141 static bool HasTag(const DicomMap& fields, | |
| 142 const std::string& tagName) | |
| 143 { | |
| 304 | 144 return fields.HasTag(ParseTag(tagName)); |
| 0 | 145 } |
| 146 | |
| 147 static const DicomValue& GetValue(const DicomMap& fields, | |
| 148 const std::string& tagName) | |
| 149 { | |
| 304 | 150 return fields.GetValue(ParseTag(tagName)); |
| 0 | 151 } |
| 152 | |
| 153 static void SetValue(DicomMap& target, | |
| 154 const std::string& tagName, | |
| 155 DicomValue* value) | |
| 156 { | |
| 304 | 157 target.SetValue(ParseTag(tagName), value); |
| 0 | 158 } |
| 159 | |
| 160 static void ToJson(Json::Value& result, | |
| 1368 | 161 const DicomMap& values, |
| 162 bool simplify); | |
| 176 | 163 |
| 788 | 164 static std::string GenerateUniqueIdentifier(ResourceType level); |
|
291
4d7469f72a0b
embedding of dicom dictionaries
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
285
diff
changeset
|
165 |
|
4d7469f72a0b
embedding of dicom dictionaries
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
285
diff
changeset
|
166 static bool SaveToMemoryBuffer(std::string& buffer, |
|
1004
a226e0959d8b
DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
991
diff
changeset
|
167 DcmDataset& dataSet); |
| 1360 | 168 |
|
2006
6301bbcbcaed
more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
169 static ValueRepresentation Convert(DcmEVR vr); |
|
6301bbcbcaed
more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
170 |
|
6301bbcbcaed
more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
171 static ValueRepresentation LookupValueRepresentation(const DicomTag& tag); |
| 1689 | 172 |
| 173 static DcmElement* CreateElementForTag(const DicomTag& tag); | |
| 174 | |
| 175 static void FillElementWithString(DcmElement& element, | |
| 176 const DicomTag& tag, | |
| 1695 | 177 const std::string& utf8alue, // Encoded using UTF-8 |
|
1818
1065401501fb
ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1765
diff
changeset
|
178 bool decodeDataUriScheme, |
| 1695 | 179 Encoding dicomEncoding); |
| 1689 | 180 |
|
1693
558b25228a23
creation of tag hierarchy from json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1690
diff
changeset
|
181 static DcmElement* FromJson(const DicomTag& tag, |
|
1934
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1929
diff
changeset
|
182 const Json::Value& element, // Encoded using UTF-8 |
|
1818
1065401501fb
ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1765
diff
changeset
|
183 bool decodeDataUriScheme, |
| 1695 | 184 Encoding dicomEncoding); |
|
1765
57b9e6890482
New configuration option: "Dictionary" to declare custom DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1737
diff
changeset
|
185 |
|
1924
6c73df12ca51
New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1900
diff
changeset
|
186 static DcmPixelSequence* GetPixelSequence(DcmDataset& dataset); |
|
1934
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1929
diff
changeset
|
187 |
|
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1929
diff
changeset
|
188 static Encoding ExtractEncoding(const Json::Value& json, |
|
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1929
diff
changeset
|
189 Encoding defaultEncoding); |
|
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1929
diff
changeset
|
190 |
|
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1929
diff
changeset
|
191 static DcmDataset* FromJson(const Json::Value& json, // Encoded using UTF-8 |
|
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1929
diff
changeset
|
192 bool generateIdentifiers, |
|
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1929
diff
changeset
|
193 bool decodeDataUriScheme, |
|
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1929
diff
changeset
|
194 Encoding defaultEncoding); |
|
1935
e251606c1433
FromDcmtkBridge::LoadFromMemoryBuffer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1934
diff
changeset
|
195 |
|
e251606c1433
FromDcmtkBridge::LoadFromMemoryBuffer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1934
diff
changeset
|
196 static DcmFileFormat* LoadFromMemoryBuffer(const void* buffer, |
|
e251606c1433
FromDcmtkBridge::LoadFromMemoryBuffer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1934
diff
changeset
|
197 size_t size); |
|
1998
9b61701c35f2
New URI "/modalities/.../move" to issue C-Move SCU requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1936
diff
changeset
|
198 |
|
9b61701c35f2
New URI "/modalities/.../move" to issue C-Move SCU requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1936
diff
changeset
|
199 static void FromJson(DicomMap& values, |
|
9b61701c35f2
New URI "/modalities/.../move" to issue C-Move SCU requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1936
diff
changeset
|
200 const Json::Value& result); |
| 0 | 201 }; |
| 202 } |