Mercurial > hg > orthanc
annotate OrthancServer/ServerIndex.h @ 3025:039a9d262d64 db-changes
preparing to speed up find in databases
author | Sebastien Jodogne <s.jodogne@gmail.com> |
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date | Mon, 17 Dec 2018 17:05:28 +0100 |
parents | d207f6ac1f86 |
children | fd587cf51a89 |
rev | line source |
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0 | 1 /** |
62 | 2 * Orthanc - A Lightweight, RESTful DICOM Store |
1900 | 3 * Copyright (C) 2012-2016 Sebastien Jodogne, Medical Physics |
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4 * Department, University Hospital of Liege, Belgium |
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5 * Copyright (C) 2017-2018 Osimis S.A., Belgium |
0 | 6 * |
7 * This program is free software: you can redistribute it and/or | |
8 * modify it under the terms of the GNU General Public License as | |
9 * published by the Free Software Foundation, either version 3 of the | |
10 * License, or (at your option) any later version. | |
136 | 11 * |
12 * In addition, as a special exception, the copyright holders of this | |
13 * program give permission to link the code of its release with the | |
14 * OpenSSL project's "OpenSSL" library (or with modified versions of it | |
15 * that use the same license as the "OpenSSL" library), and distribute | |
16 * the linked executables. You must obey the GNU General Public License | |
17 * in all respects for all of the code used other than "OpenSSL". If you | |
18 * modify file(s) with this exception, you may extend this exception to | |
19 * your version of the file(s), but you are not obligated to do so. If | |
20 * you do not wish to do so, delete this exception statement from your | |
21 * version. If you delete this exception statement from all source files | |
22 * in the program, then also delete it here. | |
0 | 23 * |
24 * This program is distributed in the hope that it will be useful, but | |
25 * WITHOUT ANY WARRANTY; without even the implied warranty of | |
26 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU | |
27 * General Public License for more details. | |
28 * | |
29 * You should have received a copy of the GNU General Public License | |
30 * along with this program. If not, see <http://www.gnu.org/licenses/>. | |
31 **/ | |
32 | |
33 | |
34 #pragma once | |
35 | |
36 #include <boost/thread.hpp> | |
220 | 37 #include <boost/noncopyable.hpp> |
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38 #include "../Core/Cache/LeastRecentlyUsedIndex.h" |
0 | 39 #include "../Core/SQLite/Connection.h" |
40 #include "../Core/DicomFormat/DicomMap.h" | |
183 | 41 #include "ServerEnumerations.h" |
0 | 42 |
1247 | 43 #include "IDatabaseWrapper.h" |
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44 |
62 | 45 namespace Orthanc |
0 | 46 { |
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47 class LookupResource; |
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48 class ServerContext; |
1822 | 49 class DicomInstanceToStore; |
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50 class ParsedDicomFile; |
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51 |
220 | 52 class ServerIndex : public boost::noncopyable |
0 | 53 { |
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54 public: |
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55 typedef std::list<FileInfo> Attachments; |
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56 typedef std::map<std::pair<ResourceType, MetadataType>, std::string> MetadataMap; |
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57 |
0 | 58 private: |
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59 class Listener; |
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60 class Transaction; |
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61 class UnstableResourcePayload; |
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62 |
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63 bool done_; |
0 | 64 boost::mutex mutex_; |
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65 boost::thread flushThread_; |
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66 boost::thread unstableResourcesMonitorThread_; |
0 | 67 |
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68 std::auto_ptr<Listener> listener_; |
1247 | 69 IDatabaseWrapper& db_; |
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70 LeastRecentlyUsedIndex<int64_t, UnstableResourcePayload> unstableResources_; |
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71 |
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72 uint64_t maximumStorageSize_; |
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73 unsigned int maximumPatients_; |
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74 bool overwrite_; |
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75 |
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76 static void FlushThread(ServerIndex* that, |
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77 unsigned int threadSleep); |
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78 |
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79 static void UnstableResourcesMonitorThread(ServerIndex* that, |
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80 unsigned int threadSleep); |
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81 |
202 | 82 void MainDicomTagsToJson(Json::Value& result, |
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83 int64_t resourceId, |
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84 ResourceType resourceType); |
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85 |
585 | 86 SeriesStatus GetSeriesStatus(int64_t id); |
199 | 87 |
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88 bool IsRecyclingNeeded(uint64_t instanceSize); |
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89 |
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90 void Recycle(uint64_t instanceSize, |
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91 const std::string& newPatientId); |
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92 |
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93 void StandaloneRecycling(); |
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94 |
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95 void MarkAsUnstable(int64_t id, |
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96 Orthanc::ResourceType type, |
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97 const std::string& publicId); |
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98 |
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99 void GetStatisticsInternal(/* out */ uint64_t& diskSize, |
646 | 100 /* out */ uint64_t& uncompressedSize, |
101 /* out */ unsigned int& countStudies, | |
102 /* out */ unsigned int& countSeries, | |
103 /* out */ unsigned int& countInstances, | |
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104 /* out */ uint64_t& dicomDiskSize, |
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105 /* out */ uint64_t& dicomUncompressedSize, |
646 | 106 /* in */ int64_t id, |
107 /* in */ ResourceType type); | |
108 | |
1238 | 109 bool GetMetadataAsInteger(int64_t& result, |
1237 | 110 int64_t id, |
111 MetadataType type); | |
112 | |
113 void LogChange(int64_t internalId, | |
114 ChangeType changeType, | |
115 ResourceType resourceType, | |
1297 | 116 const std::string& publicId); |
1237 | 117 |
118 uint64_t IncrementGlobalSequenceInternal(GlobalProperty property); | |
119 | |
1299 | 120 int64_t CreateResource(const std::string& publicId, |
121 ResourceType type); | |
122 | |
2188 | 123 void SetInstanceMetadata(std::map<MetadataType, std::string>& instanceMetadata, |
124 int64_t instance, | |
125 MetadataType metadata, | |
126 const std::string& value); | |
127 | |
0 | 128 public: |
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129 ServerIndex(ServerContext& context, |
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130 IDatabaseWrapper& database, |
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131 unsigned int threadSleep); |
0 | 132 |
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133 ~ServerIndex(); |
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134 |
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135 void Stop(); |
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136 |
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137 uint64_t GetMaximumStorageSize() const |
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138 { |
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139 return maximumStorageSize_; |
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140 } |
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141 |
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142 uint64_t GetMaximumPatientCount() const |
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143 { |
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144 return maximumPatients_; |
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145 } |
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146 |
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147 // "size == 0" means no limit on the storage size |
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148 void SetMaximumStorageSize(uint64_t size); |
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149 |
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150 // "count == 0" means no limit on the number of patients |
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151 void SetMaximumPatientCount(unsigned int count); |
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152 |
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153 void SetOverwriteInstances(bool overwrite); |
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154 |
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155 StoreStatus Store(std::map<MetadataType, std::string>& instanceMetadata, |
1822 | 156 DicomInstanceToStore& instance, |
157 const Attachments& attachments); | |
0 | 158 |
238 | 159 void ComputeStatistics(Json::Value& target); |
0 | 160 |
212 | 161 bool LookupResource(Json::Value& result, |
162 const std::string& publicId, | |
163 ResourceType expectedType); | |
0 | 164 |
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165 bool LookupAttachment(FileInfo& attachment, |
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166 const std::string& instanceUuid, |
233 | 167 FileContentType contentType); |
0 | 168 |
1354 | 169 void GetAllUuids(std::list<std::string>& target, |
190 | 170 ResourceType resourceType); |
0 | 171 |
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172 void GetAllUuids(std::list<std::string>& target, |
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173 ResourceType resourceType, |
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174 size_t since, |
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175 size_t limit); |
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176 |
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177 bool DeleteResource(Json::Value& target /* out */, |
212 | 178 const std::string& uuid, |
179 ResourceType expectedType); | |
0 | 180 |
1247 | 181 void GetChanges(Json::Value& target, |
0 | 182 int64_t since, |
183 unsigned int maxResults); | |
231 | 184 |
1247 | 185 void GetLastChange(Json::Value& target); |
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186 |
231 | 187 void LogExportedResource(const std::string& publicId, |
188 const std::string& remoteModality); | |
189 | |
1247 | 190 void GetExportedResources(Json::Value& target, |
231 | 191 int64_t since, |
192 unsigned int maxResults); | |
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193 |
1247 | 194 void GetLastExportedResource(Json::Value& target); |
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195 |
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196 bool IsProtectedPatient(const std::string& publicId); |
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197 |
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198 void SetProtectedPatient(const std::string& publicId, |
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199 bool isProtected); |
304 | 200 |
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201 void GetChildren(std::list<std::string>& result, |
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202 const std::string& publicId); |
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203 |
304 | 204 void GetChildInstances(std::list<std::string>& result, |
205 const std::string& publicId); | |
206 | |
306
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207 void SetMetadata(const std::string& publicId, |
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208 MetadataType type, |
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209 const std::string& value); |
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210 |
438 | 211 void DeleteMetadata(const std::string& publicId, |
212 MetadataType type); | |
213 | |
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214 bool LookupMetadata(std::string& target, |
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215 const std::string& publicId, |
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216 MetadataType type); |
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217 |
739 | 218 void ListAvailableMetadata(std::list<MetadataType>& target, |
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219 const std::string& publicId); |
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220 |
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221 bool GetMetadata(Json::Value& target, |
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222 const std::string& publicId); |
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223 |
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224 void ListAvailableAttachments(std::list<FileContentType>& target, |
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225 const std::string& publicId, |
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226 ResourceType expectedType); |
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227 |
306
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228 bool LookupParent(std::string& target, |
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229 const std::string& publicId); |
310 | 230 |
231 uint64_t IncrementGlobalSequence(GlobalProperty sequence); | |
315 | 232 |
233 void LogChange(ChangeType changeType, | |
234 const std::string& publicId); | |
413
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235 |
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236 void DeleteChanges(); |
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237 |
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238 void DeleteExportedResources(); |
440
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239 |
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240 void GetStatistics(Json::Value& target, |
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241 const std::string& publicId); |
521 | 242 |
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243 void GetStatistics(/* out */ uint64_t& diskSize, |
646 | 244 /* out */ uint64_t& uncompressedSize, |
245 /* out */ unsigned int& countStudies, | |
246 /* out */ unsigned int& countSeries, | |
247 /* out */ unsigned int& countInstances, | |
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248 /* out */ uint64_t& dicomDiskSize, |
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249 /* out */ uint64_t& dicomUncompressedSize, |
646 | 250 const std::string& publicId); |
251 | |
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252 void LookupIdentifierExact(std::list<std::string>& result, |
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253 ResourceType level, |
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254 const DicomTag& tag, |
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255 const std::string& value); |
615 | 256 |
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257 StoreStatus AddAttachment(const FileInfo& attachment, |
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258 const std::string& publicId); |
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259 |
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260 void DeleteAttachment(const std::string& publicId, |
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261 FileContentType type); |
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262 |
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263 void SetGlobalProperty(GlobalProperty property, |
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264 const std::string& value); |
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265 |
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266 bool LookupGlobalProperty(std::string& value, |
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267 GlobalProperty property); |
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268 |
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269 std::string GetGlobalProperty(GlobalProperty property, |
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270 const std::string& defaultValue); |
1352 | 271 |
272 bool GetMainDicomTags(DicomMap& result, | |
273 const std::string& publicId, | |
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274 ResourceType expectedType, |
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275 ResourceType levelOfInterest); |
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276 |
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277 // Only applicable at the instance level |
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278 bool GetAllMainDicomTags(DicomMap& result, |
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279 const std::string& instancePublicId); |
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280 |
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281 bool LookupResourceType(ResourceType& type, |
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282 const std::string& publicId); |
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283 |
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284 unsigned int GetDatabaseVersion(); |
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285 |
1753 | 286 void FindCandidates(std::vector<std::string>& resources, |
287 std::vector<std::string>& instances, | |
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288 const ::Orthanc::LookupResource& lookup); |
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289 |
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290 bool LookupParent(std::string& target, |
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291 const std::string& publicId, |
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292 ResourceType parentType); |
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293 |
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294 void ReconstructInstance(ParsedDicomFile& dicom); |
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295 |
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296 void ApplyLookupPatients(std::vector<std::string>& patientsId, |
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297 std::vector<std::string>& instancesId, |
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298 const DatabaseLookup& lookup, |
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299 size_t limit); |
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300 |
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301 void ApplyLookupResources(std::vector<std::string>& resourcesId, |
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302 std::vector<std::string>& instancesId, |
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303 const DatabaseLookup& lookup, |
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304 ResourceType queryLevel, |
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305 size_t limit); |
0 | 306 }; |
307 } |