annotate Framework/DicomizerParameters.cpp @ 334:f011fc199b6a default tip

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author Sebastien Jodogne <s.jodogne@gmail.com>
date Fri, 18 Oct 2024 15:44:18 +0200
parents a92bb720f90b
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1 /**
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2 * Orthanc - A Lightweight, RESTful DICOM Store
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3 * Copyright (C) 2012-2016 Sebastien Jodogne, Medical Physics
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4 * Department, University Hospital of Liege, Belgium
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5 * Copyright (C) 2017-2023 Osimis S.A., Belgium
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6 * Copyright (C) 2024-2024 Orthanc Team SRL, Belgium
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7020852a8fa9 updated year to 2024
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7 * Copyright (C) 2021-2024 Sebastien Jodogne, ICTEAM UCLouvain, Belgium
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8 *
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9 * This program is free software: you can redistribute it and/or
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10 * modify it under the terms of the GNU Affero General Public License
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11 * as published by the Free Software Foundation, either version 3 of
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12 * the License, or (at your option) any later version.
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13 *
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14 * This program is distributed in the hope that it will be useful, but
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15 * WITHOUT ANY WARRANTY; without even the implied warranty of
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16 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
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17 * Affero General Public License for more details.
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18 *
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19 * You should have received a copy of the GNU Affero General Public License
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20 * along with this program. If not, see <http://www.gnu.org/licenses/>.
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21 **/
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22
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23
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24 #include "PrecompiledHeadersWSI.h"
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25 #include "DicomizerParameters.h"
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26
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27 #include "ImageToolbox.h"
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28 #include "Targets/FolderTarget.h"
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29 #include "Targets/OrthancTarget.h"
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30
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31 #include <OrthancException.h>
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32
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33 #include <boost/thread.hpp>
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34 #include <boost/lexical_cast.hpp>
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35
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36 namespace OrthancWSI
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37 {
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38 static unsigned int ChooseNumberOfThreads()
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39 {
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40 unsigned int nthreads = boost::thread::hardware_concurrency();
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41
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42 if (nthreads % 2 == 0)
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43 {
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44 nthreads = nthreads / 2;
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45 }
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46 else
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47 {
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48 nthreads = nthreads / 2 + 1;
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49 }
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50
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51 if (nthreads == 0)
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52 {
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53 nthreads = 1;
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54 }
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55
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56 return nthreads;
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57 }
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58
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59
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60 DicomizerParameters::DicomizerParameters() :
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61 safetyCheck_(false),
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62 repaintBackground_(false),
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63 targetCompression_(ImageCompression_Jpeg),
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64 hasTargetTileSize_(false),
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65 targetTileWidth_(512),
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66 targetTileHeight_(512),
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67 maxDicomFileSize_(10 * 1024 * 1024), // 10MB
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68 reconstructPyramid_(false),
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69 pyramidLevelsCount_(0),
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70 pyramidLowerLevelsCount_(0),
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71 smooth_(false),
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72 jpegQuality_(90),
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73 forceReencode_(false),
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74 opticalPath_(OpticalPath_Brightfield),
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75 isCytomineSource_(false),
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76 cytomineImageInstanceId_(-1),
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77 cytomineCompression_(ImageCompression_Png),
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78 forceOpenSlide_(false),
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79 padding_(1)
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80 {
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81 backgroundColor_[0] = 255;
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82 backgroundColor_[1] = 255;
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83 backgroundColor_[2] = 255;
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84 threadsCount_ = ChooseNumberOfThreads();
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85 }
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86
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87
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88 void DicomizerParameters::SetBackgroundColor(uint8_t red,
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89 uint8_t green,
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90 uint8_t blue)
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91 {
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92 repaintBackground_ = true;
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93 backgroundColor_[0] = red;
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94 backgroundColor_[1] = green;
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95 backgroundColor_[2] = blue;
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96 }
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97
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98
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99 void DicomizerParameters::SetTargetTileSize(unsigned int width,
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100 unsigned int height)
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101 {
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102 hasTargetTileSize_ = true;
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103 targetTileWidth_ = width;
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104 targetTileHeight_ = height;
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105 }
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106
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107
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108 unsigned int DicomizerParameters::GetTargetTileWidth(unsigned int defaultWidth) const
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109 {
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110 if (hasTargetTileSize_ &&
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111 targetTileWidth_ != 0)
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112 {
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113 return targetTileWidth_;
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114 }
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115 else
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116 {
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117 return defaultWidth;
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118 }
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119 }
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120
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121
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122 unsigned int DicomizerParameters::GetTargetTileWidth(const ITiledPyramid& source) const
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123 {
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124 ImageToolbox::CheckConstantTileSize(source);
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125 return GetTargetTileWidth(source.GetTileWidth(0));
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126 }
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127
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128
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129 unsigned int DicomizerParameters::GetTargetTileHeight(unsigned int defaultHeight) const
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130 {
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131 if (hasTargetTileSize_ &&
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132 targetTileHeight_ != 0)
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133 {
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134 return targetTileHeight_;
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135 }
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136 else
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137 {
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138 return defaultHeight;
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139 }
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140 }
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141
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142
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143 unsigned int DicomizerParameters::GetTargetTileHeight(const ITiledPyramid& source) const
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144 {
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145 ImageToolbox::CheckConstantTileSize(source);
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146 return GetTargetTileHeight(source.GetTileHeight(0));
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147 }
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148
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149
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150 void DicomizerParameters::SetThreadsCount(unsigned int threads)
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151 {
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152 if (threads == 0)
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153 {
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154 throw Orthanc::OrthancException(Orthanc::ErrorCode_ParameterOutOfRange);
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155 }
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156
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157 threadsCount_ = threads;
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158 }
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159
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160
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161 void DicomizerParameters::SetDicomMaxFileSize(unsigned int size)
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162 {
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163 maxDicomFileSize_ = size;
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164 }
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165
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166
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167 void DicomizerParameters::SetPyramidLevelsCount(unsigned int count)
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168 {
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169 if (count == 0)
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170 {
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171 throw Orthanc::OrthancException(Orthanc::ErrorCode_ParameterOutOfRange);
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172 }
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173
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174 pyramidLevelsCount_ = count;
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175 }
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176
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177
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178 unsigned int DicomizerParameters::GetPyramidLevelsCount(const IPyramidWriter& target,
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179 const ITiledPyramid& source) const
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180 {
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181 if (pyramidLevelsCount_ != 0)
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182 {
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183 return pyramidLevelsCount_;
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184 }
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185
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186 ImageToolbox::CheckConstantTileSize(source);
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187
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188 // By default, the number of levels for the pyramid is taken so that
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189 // the upper level is reduced either to 1 column of tiles, or to 1
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190 // row of tiles.
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191 unsigned int totalWidth = source.GetLevelWidth(0);
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192 unsigned int totalHeight = source.GetLevelHeight(0);
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193
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194 unsigned int countLevels = 1;
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195 for (;;)
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196 {
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197 unsigned int zoom = 1 << (countLevels - 1);
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198
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199 if (CeilingDivision(totalWidth, zoom) <= target.GetTileWidth() ||
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200 CeilingDivision(totalHeight, zoom) <= target.GetTileHeight())
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201 {
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202 break;
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203 }
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204
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205 countLevels += 1;
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206 }
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207
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208 return countLevels;
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209 }
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210
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211
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212 void DicomizerParameters::SetPyramidLowerLevelsCount(unsigned int count)
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213 {
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214 if (count == 0)
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215 {
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216 throw Orthanc::OrthancException(Orthanc::ErrorCode_ParameterOutOfRange);
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217 }
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218
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219 pyramidLowerLevelsCount_ = count;
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220 }
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221
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222
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223 unsigned int DicomizerParameters::GetPyramidLowerLevelsCount(const IPyramidWriter& target,
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224 const ITiledPyramid& source) const
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225 {
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226 if (pyramidLowerLevelsCount_ != 0)
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227 {
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228 return pyramidLowerLevelsCount_;
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229 }
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230
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231 unsigned int fullNumberOfTiles = (
217
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232 CeilingDivision(source.GetLevelWidth(0), source.GetTileWidth(0)) *
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233 CeilingDivision(source.GetLevelHeight(0), source.GetTileHeight(0)));
0
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234
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235 // By default, the number of lower levels in the pyramid is chosen
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236 // as a compromise between the number of tasks (there should not be
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237 // too few tasks, otherwise multithreading would not be efficient)
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238 // and memory consumption (maximum 64MB of RAM due to the decoding
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239 // of the tiles of the source image per thread: cf. PyramidReader).
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240 unsigned int result = 1;
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241 for (;;)
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242 {
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243 unsigned int zoom = 1 << (result - 1);
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244 unsigned int numberOfTiles = CeilingDivision(fullNumberOfTiles, zoom * zoom);
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245
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246 if (result + 1 > target.GetLevelCount() ||
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247 numberOfTiles < 4 * GetThreadsCount() ||
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248 zoom * target.GetTileWidth() > 4096 ||
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249 zoom * target.GetTileHeight() > 4096)
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250 {
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251 break;
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252 }
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253
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254 result += 1;
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255 }
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256
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257 return result - 1;
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258 }
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259
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260
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261 void DicomizerParameters::SetJpegQuality(int quality)
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262 {
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263 if (quality <= 0 ||
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264 quality > 100)
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265 {
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266 throw Orthanc::OrthancException(Orthanc::ErrorCode_ParameterOutOfRange);
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267 }
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268
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269 jpegQuality_ = quality;
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270 }
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271
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272
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273 IFileTarget* DicomizerParameters::CreateTarget() const
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274 {
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275 if (folder_.empty() ||
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276 folderPattern_.empty())
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277 {
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278 return new OrthancTarget(orthanc_);
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279 }
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280 else
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281 {
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282 return new FolderTarget(folder_ + "/" + folderPattern_);
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283 }
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284 }
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285
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286
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287 void DicomizerParameters::SetCytomineSource(const std::string& url,
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288 const std::string& publicKey,
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289 const std::string& privateKey,
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290 int imageInstanceId,
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291 ImageCompression cytomineCompression)
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292 {
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293 isCytomineSource_ = true;
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294 cytomineServer_.SetUrl(url);
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295 cytominePublicKey_ = publicKey;
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296 cytominePrivateKey_ = privateKey;
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297 cytomineImageInstanceId_ = imageInstanceId;
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298 cytomineCompression_ = cytomineCompression;
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299 }
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300
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301
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302 const Orthanc::WebServiceParameters& DicomizerParameters::GetCytomineServer() const
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303 {
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304 if (isCytomineSource_)
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305 {
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306 return cytomineServer_;
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307 }
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308 else
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309 {
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310 throw Orthanc::OrthancException(Orthanc::ErrorCode_BadSequenceOfCalls);
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311 }
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312 }
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313
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314
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315 const std::string& DicomizerParameters::GetCytominePublicKey() const
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316 {
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317 if (isCytomineSource_)
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318 {
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319 return cytominePublicKey_;
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320 }
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321 else
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322 {
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323 throw Orthanc::OrthancException(Orthanc::ErrorCode_BadSequenceOfCalls);
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324 }
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325 }
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326
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327
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328 const std::string& DicomizerParameters::GetCytominePrivateKey() const
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329 {
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330 if (isCytomineSource_)
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331 {
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332 return cytominePrivateKey_;
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333 }
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334 else
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335 {
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336 throw Orthanc::OrthancException(Orthanc::ErrorCode_BadSequenceOfCalls);
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337 }
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338 }
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339
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340
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341 int DicomizerParameters::GetCytomineImageInstanceId() const
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342 {
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343 if (isCytomineSource_)
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344 {
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345 return cytomineImageInstanceId_;
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346 }
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347 else
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348 {
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349 throw Orthanc::OrthancException(Orthanc::ErrorCode_BadSequenceOfCalls);
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350 }
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351 }
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352
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353
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354 ImageCompression DicomizerParameters::GetCytomineCompression() const
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355 {
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356 if (isCytomineSource_)
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357 {
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358 return cytomineCompression_;
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359 }
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diff changeset
360 else
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361 {
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362 throw Orthanc::OrthancException(Orthanc::ErrorCode_BadSequenceOfCalls);
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diff changeset
363 }
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364 }
298
fa734a851551 New option: "tiff-alignment" to control deep zoom of plain TIFF over IIIF
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365
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366
324
a92bb720f90b renamed option --tiff-alignment as --padding
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367 void DicomizerParameters::SetPadding(unsigned int padding)
298
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368 {
324
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diff changeset
369 if (padding == 0)
298
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370 {
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371 throw Orthanc::OrthancException(Orthanc::ErrorCode_ParameterOutOfRange);
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diff changeset
372 }
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diff changeset
373 else
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diff changeset
374 {
324
a92bb720f90b renamed option --tiff-alignment as --padding
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diff changeset
375 padding_ = padding;
298
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diff changeset
376 }
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diff changeset
377 }
0
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
378 }