Mercurial > hg > orthanc-wsi

annotate Framework/DicomizerParameters.cpp @ 321:0c34b6625c67

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author Sebastien Jodogne <s.jodogne@gmail.com>
date Wed, 16 Oct 2024 15:01:46 +0200
parents 0683312e21ba
children 429c4efa1fde
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1 /**
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2 * Orthanc - A Lightweight, RESTful DICOM Store
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3 * Copyright (C) 2012-2016 Sebastien Jodogne, Medical Physics
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4 * Department, University Hospital of Liege, Belgium
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5 * Copyright (C) 2017-2023 Osimis S.A., Belgium
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6 * Copyright (C) 2024-2024 Orthanc Team SRL, Belgium
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7020852a8fa9 updated year to 2024
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7 * Copyright (C) 2021-2024 Sebastien Jodogne, ICTEAM UCLouvain, Belgium
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8 *
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9 * This program is free software: you can redistribute it and/or
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10 * modify it under the terms of the GNU Affero General Public License
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11 * as published by the Free Software Foundation, either version 3 of
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12 * the License, or (at your option) any later version.
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13 *
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14 * This program is distributed in the hope that it will be useful, but
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15 * WITHOUT ANY WARRANTY; without even the implied warranty of
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16 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
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17 * Affero General Public License for more details.
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18 *
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19 * You should have received a copy of the GNU Affero General Public License
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20 * along with this program. If not, see <http://www.gnu.org/licenses/>.
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21 **/
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22
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23
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24 #include "PrecompiledHeadersWSI.h"
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25 #include "DicomizerParameters.h"
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26
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27 #include "ImageToolbox.h"
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28 #include "Targets/FolderTarget.h"
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29 #include "Targets/OrthancTarget.h"
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30
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31 #include <OrthancException.h>
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32
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33 #include <boost/thread.hpp>
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34 #include <boost/lexical_cast.hpp>
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35
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36 namespace OrthancWSI
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37 {
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38 static unsigned int ChooseNumberOfThreads()
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39 {
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40 unsigned int nthreads = boost::thread::hardware_concurrency();
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41
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42 if (nthreads % 2 == 0)
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43 {
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44 nthreads = nthreads / 2;
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45 }
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46 else
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47 {
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48 nthreads = nthreads / 2 + 1;
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49 }
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50
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51 if (nthreads == 0)
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52 {
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53 nthreads = 1;
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54 }
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55
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56 return nthreads;
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57 }
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58
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59
91
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60 DicomizerParameters::DicomizerParameters() :
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61 safetyCheck_(false),
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62 repaintBackground_(false),
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63 targetCompression_(ImageCompression_Jpeg),
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64 hasTargetTileSize_(false),
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65 targetTileWidth_(512),
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66 targetTileHeight_(512),
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67 maxDicomFileSize_(10 * 1024 * 1024), // 10MB
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68 reconstructPyramid_(false),
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69 pyramidLevelsCount_(0),
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70 pyramidLowerLevelsCount_(0),
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71 smooth_(false),
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72 jpegQuality_(90),
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73 forceReencode_(false),
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74 opticalPath_(OpticalPath_Brightfield),
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75 isCytomineSource_(false),
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76 cytomineImageInstanceId_(-1),
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77 cytomineCompression_(ImageCompression_Png),
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78 tiffAlignment_(1)
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79 {
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80 backgroundColor_[0] = 255;
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81 backgroundColor_[1] = 255;
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82 backgroundColor_[2] = 255;
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83 threadsCount_ = ChooseNumberOfThreads();
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84 }
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85
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86
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87 void DicomizerParameters::SetBackgroundColor(uint8_t red,
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88 uint8_t green,
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89 uint8_t blue)
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90 {
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91 repaintBackground_ = true;
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92 backgroundColor_[0] = red;
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93 backgroundColor_[1] = green;
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94 backgroundColor_[2] = blue;
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95 }
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96
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97
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98 void DicomizerParameters::SetTargetTileSize(unsigned int width,
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99 unsigned int height)
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100 {
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101 hasTargetTileSize_ = true;
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102 targetTileWidth_ = width;
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103 targetTileHeight_ = height;
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104 }
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105
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106
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107 unsigned int DicomizerParameters::GetTargetTileWidth(unsigned int defaultWidth) const
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108 {
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109 if (hasTargetTileSize_ &&
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110 targetTileWidth_ != 0)
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111 {
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112 return targetTileWidth_;
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113 }
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114 else
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115 {
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116 return defaultWidth;
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117 }
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118 }
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119
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120
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121 unsigned int DicomizerParameters::GetTargetTileWidth(const ITiledPyramid& source) const
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122 {
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123 ImageToolbox::CheckConstantTileSize(source);
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124 return GetTargetTileWidth(source.GetTileWidth(0));
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125 }
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126
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127
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128 unsigned int DicomizerParameters::GetTargetTileHeight(unsigned int defaultHeight) const
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129 {
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130 if (hasTargetTileSize_ &&
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131 targetTileHeight_ != 0)
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132 {
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133 return targetTileHeight_;
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134 }
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135 else
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136 {
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137 return defaultHeight;
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138 }
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139 }
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140
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141
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142 unsigned int DicomizerParameters::GetTargetTileHeight(const ITiledPyramid& source) const
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143 {
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144 ImageToolbox::CheckConstantTileSize(source);
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145 return GetTargetTileHeight(source.GetTileHeight(0));
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146 }
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147
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148
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149 void DicomizerParameters::SetThreadsCount(unsigned int threads)
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150 {
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151 if (threads == 0)
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152 {
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153 throw Orthanc::OrthancException(Orthanc::ErrorCode_ParameterOutOfRange);
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154 }
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155
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156 threadsCount_ = threads;
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157 }
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158
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159
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160 void DicomizerParameters::SetDicomMaxFileSize(unsigned int size)
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161 {
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162 maxDicomFileSize_ = size;
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163 }
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164
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165
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166 void DicomizerParameters::SetPyramidLevelsCount(unsigned int count)
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167 {
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168 if (count == 0)
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169 {
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170 throw Orthanc::OrthancException(Orthanc::ErrorCode_ParameterOutOfRange);
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171 }
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172
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173 pyramidLevelsCount_ = count;
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174 }
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175
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176
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177 unsigned int DicomizerParameters::GetPyramidLevelsCount(const IPyramidWriter& target,
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178 const ITiledPyramid& source) const
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179 {
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180 if (pyramidLevelsCount_ != 0)
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181 {
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182 return pyramidLevelsCount_;
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183 }
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184
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185 ImageToolbox::CheckConstantTileSize(source);
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186
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187 // By default, the number of levels for the pyramid is taken so that
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188 // the upper level is reduced either to 1 column of tiles, or to 1
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189 // row of tiles.
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190 unsigned int totalWidth = source.GetLevelWidth(0);
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191 unsigned int totalHeight = source.GetLevelHeight(0);
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192
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193 unsigned int countLevels = 1;
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194 for (;;)
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195 {
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196 unsigned int zoom = 1 << (countLevels - 1);
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197
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198 if (CeilingDivision(totalWidth, zoom) <= target.GetTileWidth() ||
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199 CeilingDivision(totalHeight, zoom) <= target.GetTileHeight())
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200 {
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201 break;
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202 }
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203
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204 countLevels += 1;
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205 }
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206
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207 return countLevels;
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208 }
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209
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210
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211 void DicomizerParameters::SetPyramidLowerLevelsCount(unsigned int count)
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212 {
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213 if (count == 0)
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214 {
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215 throw Orthanc::OrthancException(Orthanc::ErrorCode_ParameterOutOfRange);
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216 }
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217
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218 pyramidLowerLevelsCount_ = count;
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219 }
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220
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221
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222 unsigned int DicomizerParameters::GetPyramidLowerLevelsCount(const IPyramidWriter& target,
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223 const ITiledPyramid& source) const
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224 {
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225 if (pyramidLowerLevelsCount_ != 0)
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226 {
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227 return pyramidLowerLevelsCount_;
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228 }
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229
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230 unsigned int fullNumberOfTiles = (
217
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231 CeilingDivision(source.GetLevelWidth(0), source.GetTileWidth(0)) *
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232 CeilingDivision(source.GetLevelHeight(0), source.GetTileHeight(0)));
0
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233
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234 // By default, the number of lower levels in the pyramid is chosen
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235 // as a compromise between the number of tasks (there should not be
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236 // too few tasks, otherwise multithreading would not be efficient)
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237 // and memory consumption (maximum 64MB of RAM due to the decoding
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238 // of the tiles of the source image per thread: cf. PyramidReader).
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239 unsigned int result = 1;
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240 for (;;)
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241 {
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242 unsigned int zoom = 1 << (result - 1);
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243 unsigned int numberOfTiles = CeilingDivision(fullNumberOfTiles, zoom * zoom);
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244
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245 if (result + 1 > target.GetLevelCount() ||
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246 numberOfTiles < 4 * GetThreadsCount() ||
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247 zoom * target.GetTileWidth() > 4096 ||
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248 zoom * target.GetTileHeight() > 4096)
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249 {
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250 break;
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251 }
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252
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253 result += 1;
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254 }
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255
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256 return result - 1;
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257 }
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258
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259
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260 void DicomizerParameters::SetJpegQuality(int quality)
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261 {
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262 if (quality <= 0 ||
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263 quality > 100)
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264 {
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265 throw Orthanc::OrthancException(Orthanc::ErrorCode_ParameterOutOfRange);
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266 }
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267
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268 jpegQuality_ = quality;
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269 }
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270
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271
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272 IFileTarget* DicomizerParameters::CreateTarget() const
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273 {
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274 if (folder_.empty() ||
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275 folderPattern_.empty())
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276 {
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277 return new OrthancTarget(orthanc_);
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278 }
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279 else
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280 {
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281 return new FolderTarget(folder_ + "/" + folderPattern_);
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282 }
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283 }
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284
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285
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286 void DicomizerParameters::SetCytomineSource(const std::string& url,
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287 const std::string& publicKey,
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288 const std::string& privateKey,
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289 int imageInstanceId,
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290 ImageCompression cytomineCompression)
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291 {
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292 isCytomineSource_ = true;
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293 cytomineServer_.SetUrl(url);
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294 cytominePublicKey_ = publicKey;
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295 cytominePrivateKey_ = privateKey;
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296 cytomineImageInstanceId_ = imageInstanceId;
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297 cytomineCompression_ = cytomineCompression;
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298 }
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299
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300
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301 const Orthanc::WebServiceParameters& DicomizerParameters::GetCytomineServer() const
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302 {
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303 if (isCytomineSource_)
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304 {
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305 return cytomineServer_;
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306 }
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307 else
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308 {
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309 throw Orthanc::OrthancException(Orthanc::ErrorCode_BadSequenceOfCalls);
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310 }
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311 }
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312
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313
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314 const std::string& DicomizerParameters::GetCytominePublicKey() const
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315 {
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316 if (isCytomineSource_)
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317 {
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318 return cytominePublicKey_;
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319 }
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320 else
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321 {
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322 throw Orthanc::OrthancException(Orthanc::ErrorCode_BadSequenceOfCalls);
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323 }
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324 }
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325
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326
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327 const std::string& DicomizerParameters::GetCytominePrivateKey() const
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328 {
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329 if (isCytomineSource_)
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330 {
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331 return cytominePrivateKey_;
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332 }
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333 else
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334 {
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335 throw Orthanc::OrthancException(Orthanc::ErrorCode_BadSequenceOfCalls);
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336 }
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337 }
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338
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339
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340 int DicomizerParameters::GetCytomineImageInstanceId() const
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341 {
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342 if (isCytomineSource_)
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343 {
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344 return cytomineImageInstanceId_;
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345 }
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346 else
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347 {
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348 throw Orthanc::OrthancException(Orthanc::ErrorCode_BadSequenceOfCalls);
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349 }
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350 }
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351
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352
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353 ImageCompression DicomizerParameters::GetCytomineCompression() const
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354 {
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355 if (isCytomineSource_)
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356 {
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357 return cytomineCompression_;
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358 }
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diff changeset
359 else
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diff changeset
360 {
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361 throw Orthanc::OrthancException(Orthanc::ErrorCode_BadSequenceOfCalls);
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diff changeset
362 }
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363 }
298
fa734a851551 New option: "tiff-alignment" to control deep zoom of plain TIFF over IIIF
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364
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diff changeset
365
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366 void DicomizerParameters::SetTiffAlignment(unsigned int alignment)
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diff changeset
367 {
321
0c34b6625c67 cppcheck
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diff changeset
368 if (alignment == 0)
298
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369 {
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370 throw Orthanc::OrthancException(Orthanc::ErrorCode_ParameterOutOfRange);
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diff changeset
371 }
fa734a851551 New option: "tiff-alignment" to control deep zoom of plain TIFF over IIIF
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diff changeset
372 else
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parents: 254
diff changeset
373 {
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374 tiffAlignment_ = alignment;
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diff changeset
375 }
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diff changeset
376 }
0
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
377 }