Mercurial > hg > orthanc-wsi
annotate Applications/CMakeLists.txt @ 13:e944d00a8a9e
fix
author | Sebastien Jodogne <s.jodogne@gmail.com> |
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date | Thu, 27 Oct 2016 10:01:10 +0200 |
parents | 021482366dac |
children | 7a88c614be04 |
rev | line source |
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0 | 1 cmake_minimum_required(VERSION 2.8) |
2 project(OrthancWSIApplications) | |
3 | |
4 | |
5 ##################################################################### | |
6 ## Parameters of the build | |
7 ##################################################################### | |
8 | |
9 # Generic parameters | |
10 SET(STATIC_BUILD OFF CACHE BOOL "Static build of the third-party libraries (necessary for Windows)") | |
11 SET(ALLOW_DOWNLOADS OFF CACHE BOOL "Allow CMake to download packages") | |
12 | |
13 # Optional components | |
14 SET(ENABLE_SSL OFF CACHE BOOL "Include support for SSL") | |
15 SET(USE_DCMTK_361 OFF CACHE BOOL "Use forthcoming DCMTK version 3.6.1 in static builds (instead of 3.6.0)") | |
16 | |
17 if (CMAKE_SYSTEM_NAME STREQUAL "Linux") | |
18 set(TMP ON) | |
19 else() | |
20 set(TMP OFF) | |
21 endif() | |
22 | |
23 | |
24 # Advanced parameters to fine-tune linking against system libraries | |
25 SET(USE_SYSTEM_BOOST ON CACHE BOOL "Use the system version of Boost") | |
26 SET(USE_SYSTEM_CURL ON CACHE BOOL "Use the system version of LibCurl") | |
27 SET(USE_SYSTEM_DCMTK ON CACHE BOOL "Use the system version of DCMTK") | |
28 SET(USE_SYSTEM_JSONCPP ON CACHE BOOL "Use the system version of JsonCpp") | |
29 SET(USE_SYSTEM_LIBJPEG ON CACHE BOOL "Use the system version of libjpeg") | |
30 SET(USE_SYSTEM_LIBPNG ON CACHE BOOL "Use the system version of libpng") | |
31 SET(USE_SYSTEM_LIBTIFF ON CACHE BOOL "Use the system version of libtiff") | |
32 SET(USE_SYSTEM_OPENJPEG ON CACHE BOOL "Use the system version of OpenJpeg") | |
33 SET(USE_SYSTEM_OPENSSL ON CACHE BOOL "Use the system version of OpenSSL") | |
34 SET(USE_SYSTEM_ZLIB ON CACHE BOOL "Use the system version of ZLib") | |
35 | |
36 SET(DCMTK_DICTIONARY_DIR "" CACHE PATH "Directory containing the DCMTK dictionaries \"dicom.dic\" and \"private.dic\" (only when using system version of DCMTK)") | |
37 | |
38 | |
39 ##################################################################### | |
40 ## Configure mandatory third-party components | |
41 ##################################################################### | |
42 | |
43 SET(ORTHANC_WSI_DIR ${CMAKE_CURRENT_LIST_DIR}/..) | |
44 SET(ORTHANC_ROOT ${ORTHANC_WSI_DIR}/Framework/Orthanc) | |
45 SET(USE_OPENJPEG_JP2 ON) | |
46 SET(ENABLE_JPEG OFF) # Disable DCMTK's support for JPEG, that clashes with libtiff | |
47 SET(ENABLE_JPEG_LOSSLESS OFF) # Disable DCMTK's support for JPEG-LS | |
48 SET(ENABLE_DCMTK_NETWORK OFF) # Disable DCMTK's support for DICOM networking | |
49 SET(STANDALONE_BUILD ON) # Embed DCMTK's dictionaries for static builds | |
50 | |
51 include(CheckIncludeFiles) | |
52 include(CheckIncludeFileCXX) | |
53 include(CheckLibraryExists) | |
54 include(FindPythonInterp) | |
55 include(FindPkgConfig) | |
13 | 56 include(CheckSymbolExists) |
0 | 57 |
58 include(${ORTHANC_ROOT}/Resources/CMake/Compiler.cmake) | |
59 include(${ORTHANC_ROOT}/Resources/CMake/AutoGeneratedCode.cmake) | |
60 include(${ORTHANC_ROOT}/Resources/CMake/DownloadPackage.cmake) | |
61 | |
62 # Third-party components shipped with Orthanc | |
63 include(${ORTHANC_ROOT}/Resources/CMake/DcmtkConfiguration.cmake) | |
64 include(${ORTHANC_ROOT}/Resources/CMake/JsonCppConfiguration.cmake) | |
65 include(${ORTHANC_ROOT}/Resources/CMake/LibCurlConfiguration.cmake) | |
66 include(${ORTHANC_ROOT}/Resources/CMake/LibJpegConfiguration.cmake) | |
67 include(${ORTHANC_ROOT}/Resources/CMake/LibPngConfiguration.cmake) | |
68 include(${ORTHANC_ROOT}/Resources/CMake/ZlibConfiguration.cmake) | |
69 | |
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70 # Include components specific to WSI |
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71 include(${ORTHANC_WSI_DIR}/Resources/CMake/Version.cmake) |
0 | 72 include(${ORTHANC_WSI_DIR}/Resources/CMake/BoostExtendedConfiguration.cmake) |
73 include(${ORTHANC_WSI_DIR}/Resources/CMake/OpenJpegConfiguration.cmake) | |
74 include(${ORTHANC_WSI_DIR}/Resources/CMake/LibTiffConfiguration.cmake) | |
75 | |
76 add_definitions( | |
77 -DORTHANC_ENABLE_BASE64=1 | |
78 -DORTHANC_ENABLE_CURL=1 | |
79 -DORTHANC_ENABLE_DCMTK=1 | |
80 -DORTHANC_ENABLE_LOGGING=1 | |
81 -DORTHANC_ENABLE_MD5=0 | |
82 -DORTHANC_JPEG_ENABLED=0 # Disable DCMTK's support for JPEG | |
83 -DORTHANC_PKCS11_ENABLED=0 | |
84 -DORTHANC_PLUGINS_ENABLED=1 # To enable class Orthanc::SharedLibrary | |
85 -DORTHANC_PUGIXML_ENABLED=0 | |
86 ) | |
87 | |
88 | |
89 ##################################################################### | |
90 ## Configure optional third-party components | |
91 ##################################################################### | |
92 | |
93 if (ENABLE_SSL) | |
94 set(ENABLE_PKCS11 OFF) | |
95 add_definitions(-DORTHANC_SSL_ENABLED=1) | |
96 include(${ORTHANC_ROOT}/Resources/CMake/OpenSslConfiguration.cmake) | |
97 else() | |
98 add_definitions(-DORTHANC_SSL_ENABLED=0) | |
99 endif() | |
100 | |
101 | |
102 ##################################################################### | |
103 ## Create the static library containing the framework | |
104 ##################################################################### | |
105 | |
106 EmbedResources( | |
107 ${DCMTK_DICTIONARIES} | |
108 BRIGHTFIELD_OPTICAL_PATH ${ORTHANC_WSI_DIR}/Resources/BrightfieldOpticalPath.json | |
109 SAMPLE_DATASET ${ORTHANC_WSI_DIR}/Resources/SampleDataset.json | |
110 SRGB_ICC_PROFILE ${ORTHANC_WSI_DIR}/Resources/sRGB.icc | |
111 ) | |
112 | |
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113 |
0 | 114 add_library(OrthancWSIFramework STATIC |
115 #${ORTHANC_WSI_DIR}/Framework/Messaging/PluginOrthancConnection.cpp | |
116 ${ORTHANC_WSI_DIR}/Framework/Algorithms/PyramidReader.cpp | |
117 ${ORTHANC_WSI_DIR}/Framework/Algorithms/ReconstructPyramidCommand.cpp | |
118 ${ORTHANC_WSI_DIR}/Framework/Algorithms/TranscodeTileCommand.cpp | |
119 ${ORTHANC_WSI_DIR}/Framework/DicomToolbox.cpp | |
120 ${ORTHANC_WSI_DIR}/Framework/DicomizerParameters.cpp | |
121 ${ORTHANC_WSI_DIR}/Framework/Enumerations.cpp | |
122 ${ORTHANC_WSI_DIR}/Framework/ImageToolbox.cpp | |
123 ${ORTHANC_WSI_DIR}/Framework/ImagedVolumeParameters.cpp | |
124 ${ORTHANC_WSI_DIR}/Framework/Inputs/DecodedTiledPyramid.cpp | |
125 ${ORTHANC_WSI_DIR}/Framework/Inputs/DicomPyramid.cpp | |
126 ${ORTHANC_WSI_DIR}/Framework/Inputs/DicomPyramidInstance.cpp | |
127 ${ORTHANC_WSI_DIR}/Framework/Inputs/DicomPyramidLevel.cpp | |
128 ${ORTHANC_WSI_DIR}/Framework/Inputs/HierarchicalTiff.cpp | |
129 ${ORTHANC_WSI_DIR}/Framework/Inputs/OpenSlideLibrary.cpp | |
130 ${ORTHANC_WSI_DIR}/Framework/Inputs/OpenSlidePyramid.cpp | |
131 ${ORTHANC_WSI_DIR}/Framework/Inputs/PyramidWithRawTiles.cpp | |
132 ${ORTHANC_WSI_DIR}/Framework/Inputs/SingleLevelDecodedPyramid.cpp | |
133 ${ORTHANC_WSI_DIR}/Framework/Inputs/TiledPyramidStatistics.cpp | |
134 ${ORTHANC_WSI_DIR}/Framework/Jpeg2000Reader.cpp | |
135 ${ORTHANC_WSI_DIR}/Framework/Jpeg2000Writer.cpp | |
136 ${ORTHANC_WSI_DIR}/Framework/Messaging/CurlOrthancConnection.cpp | |
137 ${ORTHANC_WSI_DIR}/Framework/Messaging/FolderTarget.cpp | |
138 ${ORTHANC_WSI_DIR}/Framework/Messaging/IOrthancConnection.cpp | |
139 ${ORTHANC_WSI_DIR}/Framework/Messaging/OrthancConnectionBase.cpp | |
140 ${ORTHANC_WSI_DIR}/Framework/Messaging/OrthancTarget.cpp | |
141 ${ORTHANC_WSI_DIR}/Framework/Outputs/DicomPyramidWriter.cpp | |
142 ${ORTHANC_WSI_DIR}/Framework/Outputs/HierarchicalTiffWriter.cpp | |
143 ${ORTHANC_WSI_DIR}/Framework/Outputs/InMemoryTiledImage.cpp | |
144 ${ORTHANC_WSI_DIR}/Framework/Outputs/MultiframeDicomWriter.cpp | |
145 ${ORTHANC_WSI_DIR}/Framework/Outputs/PyramidWriterBase.cpp | |
146 ${ORTHANC_WSI_DIR}/Framework/Outputs/TruncatedPyramidWriter.cpp | |
147 | |
148 ${ORTHANC_ROOT}/Core/ChunkedBuffer.cpp | |
149 ${ORTHANC_ROOT}/Core/DicomFormat/DicomArray.cpp | |
150 ${ORTHANC_ROOT}/Core/DicomFormat/DicomMap.cpp | |
151 ${ORTHANC_ROOT}/Core/DicomFormat/DicomTag.cpp | |
152 ${ORTHANC_ROOT}/Core/DicomFormat/DicomValue.cpp | |
153 ${ORTHANC_ROOT}/Core/Enumerations.cpp | |
154 ${ORTHANC_ROOT}/Core/HttpClient.cpp | |
155 ${ORTHANC_ROOT}/Core/Images/IImageWriter.cpp | |
156 ${ORTHANC_ROOT}/Core/Images/Image.cpp | |
157 ${ORTHANC_ROOT}/Core/Images/ImageAccessor.cpp | |
158 ${ORTHANC_ROOT}/Core/Images/ImageBuffer.cpp | |
159 ${ORTHANC_ROOT}/Core/Images/ImageProcessing.cpp | |
160 ${ORTHANC_ROOT}/Core/Images/JpegErrorManager.cpp | |
161 ${ORTHANC_ROOT}/Core/Images/JpegReader.cpp | |
162 ${ORTHANC_ROOT}/Core/Images/JpegWriter.cpp | |
163 ${ORTHANC_ROOT}/Core/Images/PngReader.cpp | |
164 ${ORTHANC_ROOT}/Core/Images/PngWriter.cpp | |
165 ${ORTHANC_ROOT}/Core/Logging.cpp | |
166 ${ORTHANC_ROOT}/Core/MultiThreading/BagOfTasksProcessor.cpp | |
167 ${ORTHANC_ROOT}/Core/MultiThreading/SharedMessageQueue.cpp | |
168 ${ORTHANC_ROOT}/Core/Toolbox.cpp | |
169 ${ORTHANC_ROOT}/Core/Uuid.cpp | |
170 ${ORTHANC_ROOT}/Core/WebServiceParameters.cpp | |
171 ${ORTHANC_ROOT}/OrthancServer/FromDcmtkBridge.cpp | |
172 ${ORTHANC_ROOT}/OrthancServer/ServerEnumerations.cpp | |
173 ${ORTHANC_ROOT}/OrthancServer/ToDcmtkBridge.cpp | |
174 ${ORTHANC_ROOT}/Plugins/Engine/SharedLibrary.cpp | |
175 ${ORTHANC_ROOT}/Resources/ThirdParty/base64/base64.cpp | |
176 | |
177 # Mandatory components | |
178 ${BOOST_SOURCES} | |
179 ${JSONCPP_SOURCES} | |
180 ${ZLIB_SOURCES} | |
181 ${LIBPNG_SOURCES} | |
182 ${LIBJPEG_SOURCES} | |
183 ${DCMTK_SOURCES} | |
184 ${LIBTIFF_SOURCES} | |
185 ${OPENJPEG_SOURCES} | |
186 | |
187 # Optional components | |
188 ${OPENSSL_SOURCES} | |
189 ${CURL_SOURCES} | |
190 | |
191 ${AUTOGENERATED_SOURCES} | |
192 ) | |
193 | |
194 | |
195 ##################################################################### | |
196 ## Build the WSI DICOM-izer | |
197 ##################################################################### | |
198 | |
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199 # Create the Windows resources, if need be |
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200 if (${CMAKE_SYSTEM_NAME} STREQUAL "Windows") |
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201 execute_process( |
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202 COMMAND |
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203 ${PYTHON_EXECUTABLE} ${ORTHANC_ROOT}/Resources/WindowsResources.py |
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204 ${ORTHANC_WSI_VERSION} OrthancWSIDicomizer OrthancWSIDicomizer.exe "Companion tool to Orthanc for whole-slide imaging" |
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205 ERROR_VARIABLE Failure |
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206 OUTPUT_FILE ${AUTOGENERATED_DIR}/OrthancWSIDicomizer.rc |
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207 ) |
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208 |
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209 if (Failure) |
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210 message(FATAL_ERROR "Error while computing the version information: ${Failure}") |
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211 endif() |
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212 |
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213 set(DICOMIZER_RESOURCES ${AUTOGENERATED_DIR}/OrthancWSIDicomizer.rc) |
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214 endif() |
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215 |
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216 |
0 | 217 add_executable(OrthancWSIDicomizer |
218 Dicomizer.cpp | |
219 ApplicationToolbox.cpp | |
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220 ${DICOMIZER_RESOURCES} |
0 | 221 ) |
222 | |
223 target_link_libraries(OrthancWSIDicomizer OrthancWSIFramework ${DCMTK_LIBRARIES}) | |
224 | |
6 | 225 install( |
226 TARGETS OrthancWSIDicomizer | |
227 RUNTIME DESTINATION bin | |
228 ) | |
229 | |
0 | 230 |
231 ##################################################################### | |
232 ## Build the DICOM-to-TIFF conversion tool | |
233 ##################################################################### | |
234 | |
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235 # Create the Windows resources, if need be |
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236 if (${CMAKE_SYSTEM_NAME} STREQUAL "Windows") |
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237 execute_process( |
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238 COMMAND |
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239 ${PYTHON_EXECUTABLE} ${ORTHANC_ROOT}/Resources/WindowsResources.py |
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240 ${ORTHANC_WSI_VERSION} OrthancWSIDicomToTiff OrthancWSIDicomToTiff.exe "Companion tool to Orthanc for whole-slide imaging" |
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241 ERROR_VARIABLE Failure |
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242 OUTPUT_FILE ${AUTOGENERATED_DIR}/OrthancWSIDicomToTiff.rc |
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243 ) |
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244 |
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245 if (Failure) |
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246 message(FATAL_ERROR "Error while computing the version information: ${Failure}") |
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247 endif() |
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248 |
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249 set(DICOM_TO_TIFF_RESOURCES ${AUTOGENERATED_DIR}/OrthancWSIDicomToTiff.rc) |
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250 endif() |
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251 |
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252 |
0 | 253 add_executable(OrthancWSIDicomToTiff |
254 DicomToTiff.cpp | |
255 ApplicationToolbox.cpp | |
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256 ${DICOM_TO_TIFF_RESOURCES} |
0 | 257 ) |
258 | |
259 target_link_libraries(OrthancWSIDicomToTiff OrthancWSIFramework ${DCMTK_LIBRARIES}) | |
260 | |
6 | 261 install( |
262 TARGETS OrthancWSIDicomToTiff | |
263 RUNTIME DESTINATION bin | |
264 ) | |
265 | |
0 | 266 |
267 ##################################################################### | |
268 ## Generate the documentation if Doxygen is present | |
269 ##################################################################### | |
270 | |
271 find_package(Doxygen) | |
272 if (DOXYGEN_FOUND) | |
273 configure_file( | |
274 ${ORTHANC_WSI_DIR}/Resources/OrthancWSI.doxygen | |
275 ${CMAKE_CURRENT_BINARY_DIR}/OrthancWSI.doxygen | |
276 @ONLY) | |
277 | |
278 add_custom_target(doc | |
279 ${DOXYGEN_EXECUTABLE} ${CMAKE_CURRENT_BINARY_DIR}/OrthancWSI.doxygen | |
280 COMMENT "Generating documentation with Doxygen" VERBATIM | |
281 ) | |
282 else() | |
283 message("Doxygen not found. The documentation will not be built.") | |
284 endif() |