Mercurial > hg > orthanc-wsi
annotate Applications/CMakeLists.txt @ 13:e944d00a8a9e
fix
| author | Sebastien Jodogne <s.jodogne@gmail.com> |
|---|---|
| date | Thu, 27 Oct 2016 10:01:10 +0200 |
| parents | 021482366dac |
| children | 7a88c614be04 |
| rev | line source |
|---|---|
| 0 | 1 cmake_minimum_required(VERSION 2.8) |
| 2 project(OrthancWSIApplications) | |
| 3 | |
| 4 | |
| 5 ##################################################################### | |
| 6 ## Parameters of the build | |
| 7 ##################################################################### | |
| 8 | |
| 9 # Generic parameters | |
| 10 SET(STATIC_BUILD OFF CACHE BOOL "Static build of the third-party libraries (necessary for Windows)") | |
| 11 SET(ALLOW_DOWNLOADS OFF CACHE BOOL "Allow CMake to download packages") | |
| 12 | |
| 13 # Optional components | |
| 14 SET(ENABLE_SSL OFF CACHE BOOL "Include support for SSL") | |
| 15 SET(USE_DCMTK_361 OFF CACHE BOOL "Use forthcoming DCMTK version 3.6.1 in static builds (instead of 3.6.0)") | |
| 16 | |
| 17 if (CMAKE_SYSTEM_NAME STREQUAL "Linux") | |
| 18 set(TMP ON) | |
| 19 else() | |
| 20 set(TMP OFF) | |
| 21 endif() | |
| 22 | |
| 23 | |
| 24 # Advanced parameters to fine-tune linking against system libraries | |
| 25 SET(USE_SYSTEM_BOOST ON CACHE BOOL "Use the system version of Boost") | |
| 26 SET(USE_SYSTEM_CURL ON CACHE BOOL "Use the system version of LibCurl") | |
| 27 SET(USE_SYSTEM_DCMTK ON CACHE BOOL "Use the system version of DCMTK") | |
| 28 SET(USE_SYSTEM_JSONCPP ON CACHE BOOL "Use the system version of JsonCpp") | |
| 29 SET(USE_SYSTEM_LIBJPEG ON CACHE BOOL "Use the system version of libjpeg") | |
| 30 SET(USE_SYSTEM_LIBPNG ON CACHE BOOL "Use the system version of libpng") | |
| 31 SET(USE_SYSTEM_LIBTIFF ON CACHE BOOL "Use the system version of libtiff") | |
| 32 SET(USE_SYSTEM_OPENJPEG ON CACHE BOOL "Use the system version of OpenJpeg") | |
| 33 SET(USE_SYSTEM_OPENSSL ON CACHE BOOL "Use the system version of OpenSSL") | |
| 34 SET(USE_SYSTEM_ZLIB ON CACHE BOOL "Use the system version of ZLib") | |
| 35 | |
| 36 SET(DCMTK_DICTIONARY_DIR "" CACHE PATH "Directory containing the DCMTK dictionaries \"dicom.dic\" and \"private.dic\" (only when using system version of DCMTK)") | |
| 37 | |
| 38 | |
| 39 ##################################################################### | |
| 40 ## Configure mandatory third-party components | |
| 41 ##################################################################### | |
| 42 | |
| 43 SET(ORTHANC_WSI_DIR ${CMAKE_CURRENT_LIST_DIR}/..) | |
| 44 SET(ORTHANC_ROOT ${ORTHANC_WSI_DIR}/Framework/Orthanc) | |
| 45 SET(USE_OPENJPEG_JP2 ON) | |
| 46 SET(ENABLE_JPEG OFF) # Disable DCMTK's support for JPEG, that clashes with libtiff | |
| 47 SET(ENABLE_JPEG_LOSSLESS OFF) # Disable DCMTK's support for JPEG-LS | |
| 48 SET(ENABLE_DCMTK_NETWORK OFF) # Disable DCMTK's support for DICOM networking | |
| 49 SET(STANDALONE_BUILD ON) # Embed DCMTK's dictionaries for static builds | |
| 50 | |
| 51 include(CheckIncludeFiles) | |
| 52 include(CheckIncludeFileCXX) | |
| 53 include(CheckLibraryExists) | |
| 54 include(FindPythonInterp) | |
| 55 include(FindPkgConfig) | |
| 13 | 56 include(CheckSymbolExists) |
| 0 | 57 |
| 58 include(${ORTHANC_ROOT}/Resources/CMake/Compiler.cmake) | |
| 59 include(${ORTHANC_ROOT}/Resources/CMake/AutoGeneratedCode.cmake) | |
| 60 include(${ORTHANC_ROOT}/Resources/CMake/DownloadPackage.cmake) | |
| 61 | |
| 62 # Third-party components shipped with Orthanc | |
| 63 include(${ORTHANC_ROOT}/Resources/CMake/DcmtkConfiguration.cmake) | |
| 64 include(${ORTHANC_ROOT}/Resources/CMake/JsonCppConfiguration.cmake) | |
| 65 include(${ORTHANC_ROOT}/Resources/CMake/LibCurlConfiguration.cmake) | |
| 66 include(${ORTHANC_ROOT}/Resources/CMake/LibJpegConfiguration.cmake) | |
| 67 include(${ORTHANC_ROOT}/Resources/CMake/LibPngConfiguration.cmake) | |
| 68 include(${ORTHANC_ROOT}/Resources/CMake/ZlibConfiguration.cmake) | |
| 69 | |
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70 # Include components specific to WSI |
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71 include(${ORTHANC_WSI_DIR}/Resources/CMake/Version.cmake) |
| 0 | 72 include(${ORTHANC_WSI_DIR}/Resources/CMake/BoostExtendedConfiguration.cmake) |
| 73 include(${ORTHANC_WSI_DIR}/Resources/CMake/OpenJpegConfiguration.cmake) | |
| 74 include(${ORTHANC_WSI_DIR}/Resources/CMake/LibTiffConfiguration.cmake) | |
| 75 | |
| 76 add_definitions( | |
| 77 -DORTHANC_ENABLE_BASE64=1 | |
| 78 -DORTHANC_ENABLE_CURL=1 | |
| 79 -DORTHANC_ENABLE_DCMTK=1 | |
| 80 -DORTHANC_ENABLE_LOGGING=1 | |
| 81 -DORTHANC_ENABLE_MD5=0 | |
| 82 -DORTHANC_JPEG_ENABLED=0 # Disable DCMTK's support for JPEG | |
| 83 -DORTHANC_PKCS11_ENABLED=0 | |
| 84 -DORTHANC_PLUGINS_ENABLED=1 # To enable class Orthanc::SharedLibrary | |
| 85 -DORTHANC_PUGIXML_ENABLED=0 | |
| 86 ) | |
| 87 | |
| 88 | |
| 89 ##################################################################### | |
| 90 ## Configure optional third-party components | |
| 91 ##################################################################### | |
| 92 | |
| 93 if (ENABLE_SSL) | |
| 94 set(ENABLE_PKCS11 OFF) | |
| 95 add_definitions(-DORTHANC_SSL_ENABLED=1) | |
| 96 include(${ORTHANC_ROOT}/Resources/CMake/OpenSslConfiguration.cmake) | |
| 97 else() | |
| 98 add_definitions(-DORTHANC_SSL_ENABLED=0) | |
| 99 endif() | |
| 100 | |
| 101 | |
| 102 ##################################################################### | |
| 103 ## Create the static library containing the framework | |
| 104 ##################################################################### | |
| 105 | |
| 106 EmbedResources( | |
| 107 ${DCMTK_DICTIONARIES} | |
| 108 BRIGHTFIELD_OPTICAL_PATH ${ORTHANC_WSI_DIR}/Resources/BrightfieldOpticalPath.json | |
| 109 SAMPLE_DATASET ${ORTHANC_WSI_DIR}/Resources/SampleDataset.json | |
| 110 SRGB_ICC_PROFILE ${ORTHANC_WSI_DIR}/Resources/sRGB.icc | |
| 111 ) | |
| 112 | |
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113 |
| 0 | 114 add_library(OrthancWSIFramework STATIC |
| 115 #${ORTHANC_WSI_DIR}/Framework/Messaging/PluginOrthancConnection.cpp | |
| 116 ${ORTHANC_WSI_DIR}/Framework/Algorithms/PyramidReader.cpp | |
| 117 ${ORTHANC_WSI_DIR}/Framework/Algorithms/ReconstructPyramidCommand.cpp | |
| 118 ${ORTHANC_WSI_DIR}/Framework/Algorithms/TranscodeTileCommand.cpp | |
| 119 ${ORTHANC_WSI_DIR}/Framework/DicomToolbox.cpp | |
| 120 ${ORTHANC_WSI_DIR}/Framework/DicomizerParameters.cpp | |
| 121 ${ORTHANC_WSI_DIR}/Framework/Enumerations.cpp | |
| 122 ${ORTHANC_WSI_DIR}/Framework/ImageToolbox.cpp | |
| 123 ${ORTHANC_WSI_DIR}/Framework/ImagedVolumeParameters.cpp | |
| 124 ${ORTHANC_WSI_DIR}/Framework/Inputs/DecodedTiledPyramid.cpp | |
| 125 ${ORTHANC_WSI_DIR}/Framework/Inputs/DicomPyramid.cpp | |
| 126 ${ORTHANC_WSI_DIR}/Framework/Inputs/DicomPyramidInstance.cpp | |
| 127 ${ORTHANC_WSI_DIR}/Framework/Inputs/DicomPyramidLevel.cpp | |
| 128 ${ORTHANC_WSI_DIR}/Framework/Inputs/HierarchicalTiff.cpp | |
| 129 ${ORTHANC_WSI_DIR}/Framework/Inputs/OpenSlideLibrary.cpp | |
| 130 ${ORTHANC_WSI_DIR}/Framework/Inputs/OpenSlidePyramid.cpp | |
| 131 ${ORTHANC_WSI_DIR}/Framework/Inputs/PyramidWithRawTiles.cpp | |
| 132 ${ORTHANC_WSI_DIR}/Framework/Inputs/SingleLevelDecodedPyramid.cpp | |
| 133 ${ORTHANC_WSI_DIR}/Framework/Inputs/TiledPyramidStatistics.cpp | |
| 134 ${ORTHANC_WSI_DIR}/Framework/Jpeg2000Reader.cpp | |
| 135 ${ORTHANC_WSI_DIR}/Framework/Jpeg2000Writer.cpp | |
| 136 ${ORTHANC_WSI_DIR}/Framework/Messaging/CurlOrthancConnection.cpp | |
| 137 ${ORTHANC_WSI_DIR}/Framework/Messaging/FolderTarget.cpp | |
| 138 ${ORTHANC_WSI_DIR}/Framework/Messaging/IOrthancConnection.cpp | |
| 139 ${ORTHANC_WSI_DIR}/Framework/Messaging/OrthancConnectionBase.cpp | |
| 140 ${ORTHANC_WSI_DIR}/Framework/Messaging/OrthancTarget.cpp | |
| 141 ${ORTHANC_WSI_DIR}/Framework/Outputs/DicomPyramidWriter.cpp | |
| 142 ${ORTHANC_WSI_DIR}/Framework/Outputs/HierarchicalTiffWriter.cpp | |
| 143 ${ORTHANC_WSI_DIR}/Framework/Outputs/InMemoryTiledImage.cpp | |
| 144 ${ORTHANC_WSI_DIR}/Framework/Outputs/MultiframeDicomWriter.cpp | |
| 145 ${ORTHANC_WSI_DIR}/Framework/Outputs/PyramidWriterBase.cpp | |
| 146 ${ORTHANC_WSI_DIR}/Framework/Outputs/TruncatedPyramidWriter.cpp | |
| 147 | |
| 148 ${ORTHANC_ROOT}/Core/ChunkedBuffer.cpp | |
| 149 ${ORTHANC_ROOT}/Core/DicomFormat/DicomArray.cpp | |
| 150 ${ORTHANC_ROOT}/Core/DicomFormat/DicomMap.cpp | |
| 151 ${ORTHANC_ROOT}/Core/DicomFormat/DicomTag.cpp | |
| 152 ${ORTHANC_ROOT}/Core/DicomFormat/DicomValue.cpp | |
| 153 ${ORTHANC_ROOT}/Core/Enumerations.cpp | |
| 154 ${ORTHANC_ROOT}/Core/HttpClient.cpp | |
| 155 ${ORTHANC_ROOT}/Core/Images/IImageWriter.cpp | |
| 156 ${ORTHANC_ROOT}/Core/Images/Image.cpp | |
| 157 ${ORTHANC_ROOT}/Core/Images/ImageAccessor.cpp | |
| 158 ${ORTHANC_ROOT}/Core/Images/ImageBuffer.cpp | |
| 159 ${ORTHANC_ROOT}/Core/Images/ImageProcessing.cpp | |
| 160 ${ORTHANC_ROOT}/Core/Images/JpegErrorManager.cpp | |
| 161 ${ORTHANC_ROOT}/Core/Images/JpegReader.cpp | |
| 162 ${ORTHANC_ROOT}/Core/Images/JpegWriter.cpp | |
| 163 ${ORTHANC_ROOT}/Core/Images/PngReader.cpp | |
| 164 ${ORTHANC_ROOT}/Core/Images/PngWriter.cpp | |
| 165 ${ORTHANC_ROOT}/Core/Logging.cpp | |
| 166 ${ORTHANC_ROOT}/Core/MultiThreading/BagOfTasksProcessor.cpp | |
| 167 ${ORTHANC_ROOT}/Core/MultiThreading/SharedMessageQueue.cpp | |
| 168 ${ORTHANC_ROOT}/Core/Toolbox.cpp | |
| 169 ${ORTHANC_ROOT}/Core/Uuid.cpp | |
| 170 ${ORTHANC_ROOT}/Core/WebServiceParameters.cpp | |
| 171 ${ORTHANC_ROOT}/OrthancServer/FromDcmtkBridge.cpp | |
| 172 ${ORTHANC_ROOT}/OrthancServer/ServerEnumerations.cpp | |
| 173 ${ORTHANC_ROOT}/OrthancServer/ToDcmtkBridge.cpp | |
| 174 ${ORTHANC_ROOT}/Plugins/Engine/SharedLibrary.cpp | |
| 175 ${ORTHANC_ROOT}/Resources/ThirdParty/base64/base64.cpp | |
| 176 | |
| 177 # Mandatory components | |
| 178 ${BOOST_SOURCES} | |
| 179 ${JSONCPP_SOURCES} | |
| 180 ${ZLIB_SOURCES} | |
| 181 ${LIBPNG_SOURCES} | |
| 182 ${LIBJPEG_SOURCES} | |
| 183 ${DCMTK_SOURCES} | |
| 184 ${LIBTIFF_SOURCES} | |
| 185 ${OPENJPEG_SOURCES} | |
| 186 | |
| 187 # Optional components | |
| 188 ${OPENSSL_SOURCES} | |
| 189 ${CURL_SOURCES} | |
| 190 | |
| 191 ${AUTOGENERATED_SOURCES} | |
| 192 ) | |
| 193 | |
| 194 | |
| 195 ##################################################################### | |
| 196 ## Build the WSI DICOM-izer | |
| 197 ##################################################################### | |
| 198 | |
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199 # Create the Windows resources, if need be |
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200 if (${CMAKE_SYSTEM_NAME} STREQUAL "Windows") |
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201 execute_process( |
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202 COMMAND |
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203 ${PYTHON_EXECUTABLE} ${ORTHANC_ROOT}/Resources/WindowsResources.py |
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204 ${ORTHANC_WSI_VERSION} OrthancWSIDicomizer OrthancWSIDicomizer.exe "Companion tool to Orthanc for whole-slide imaging" |
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205 ERROR_VARIABLE Failure |
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206 OUTPUT_FILE ${AUTOGENERATED_DIR}/OrthancWSIDicomizer.rc |
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207 ) |
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208 |
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209 if (Failure) |
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210 message(FATAL_ERROR "Error while computing the version information: ${Failure}") |
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211 endif() |
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212 |
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213 set(DICOMIZER_RESOURCES ${AUTOGENERATED_DIR}/OrthancWSIDicomizer.rc) |
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214 endif() |
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215 |
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216 |
| 0 | 217 add_executable(OrthancWSIDicomizer |
| 218 Dicomizer.cpp | |
| 219 ApplicationToolbox.cpp | |
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220 ${DICOMIZER_RESOURCES} |
| 0 | 221 ) |
| 222 | |
| 223 target_link_libraries(OrthancWSIDicomizer OrthancWSIFramework ${DCMTK_LIBRARIES}) | |
| 224 | |
| 6 | 225 install( |
| 226 TARGETS OrthancWSIDicomizer | |
| 227 RUNTIME DESTINATION bin | |
| 228 ) | |
| 229 | |
| 0 | 230 |
| 231 ##################################################################### | |
| 232 ## Build the DICOM-to-TIFF conversion tool | |
| 233 ##################################################################### | |
| 234 | |
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235 # Create the Windows resources, if need be |
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236 if (${CMAKE_SYSTEM_NAME} STREQUAL "Windows") |
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237 execute_process( |
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238 COMMAND |
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239 ${PYTHON_EXECUTABLE} ${ORTHANC_ROOT}/Resources/WindowsResources.py |
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240 ${ORTHANC_WSI_VERSION} OrthancWSIDicomToTiff OrthancWSIDicomToTiff.exe "Companion tool to Orthanc for whole-slide imaging" |
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241 ERROR_VARIABLE Failure |
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242 OUTPUT_FILE ${AUTOGENERATED_DIR}/OrthancWSIDicomToTiff.rc |
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243 ) |
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244 |
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245 if (Failure) |
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246 message(FATAL_ERROR "Error while computing the version information: ${Failure}") |
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247 endif() |
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248 |
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249 set(DICOM_TO_TIFF_RESOURCES ${AUTOGENERATED_DIR}/OrthancWSIDicomToTiff.rc) |
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250 endif() |
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251 |
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252 |
| 0 | 253 add_executable(OrthancWSIDicomToTiff |
| 254 DicomToTiff.cpp | |
| 255 ApplicationToolbox.cpp | |
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256 ${DICOM_TO_TIFF_RESOURCES} |
| 0 | 257 ) |
| 258 | |
| 259 target_link_libraries(OrthancWSIDicomToTiff OrthancWSIFramework ${DCMTK_LIBRARIES}) | |
| 260 | |
| 6 | 261 install( |
| 262 TARGETS OrthancWSIDicomToTiff | |
| 263 RUNTIME DESTINATION bin | |
| 264 ) | |
| 265 | |
| 0 | 266 |
| 267 ##################################################################### | |
| 268 ## Generate the documentation if Doxygen is present | |
| 269 ##################################################################### | |
| 270 | |
| 271 find_package(Doxygen) | |
| 272 if (DOXYGEN_FOUND) | |
| 273 configure_file( | |
| 274 ${ORTHANC_WSI_DIR}/Resources/OrthancWSI.doxygen | |
| 275 ${CMAKE_CURRENT_BINARY_DIR}/OrthancWSI.doxygen | |
| 276 @ONLY) | |
| 277 | |
| 278 add_custom_target(doc | |
| 279 ${DOXYGEN_EXECUTABLE} ${CMAKE_CURRENT_BINARY_DIR}/OrthancWSI.doxygen | |
| 280 COMMENT "Generating documentation with Doxygen" VERBATIM | |
| 281 ) | |
| 282 else() | |
| 283 message("Doxygen not found. The documentation will not be built.") | |
| 284 endif() |