Mercurial > hg > orthanc-wsi
annotate ViewerPlugin/IIIF.cpp @ 318:8ad12abde290
sparse re-encoding with OpenSlide (notably for MIRAX format)
| author | Sebastien Jodogne <s.jodogne@gmail.com> |
|---|---|
| date | Wed, 11 Sep 2024 16:11:16 +0200 |
| parents | 9dc7f1e8716d |
| children |
| rev | line source |
|---|---|
| 261 | 1 /** |
| 2 * Orthanc - A Lightweight, RESTful DICOM Store | |
| 3 * Copyright (C) 2012-2016 Sebastien Jodogne, Medical Physics | |
| 4 * Department, University Hospital of Liege, Belgium | |
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5 * Copyright (C) 2017-2023 Osimis S.A., Belgium |
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6 * Copyright (C) 2024-2024 Orthanc Team SRL, Belgium |
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7 * Copyright (C) 2021-2024 Sebastien Jodogne, ICTEAM UCLouvain, Belgium |
| 261 | 8 * |
| 9 * This program is free software: you can redistribute it and/or | |
| 10 * modify it under the terms of the GNU Affero General Public License | |
| 11 * as published by the Free Software Foundation, either version 3 of | |
| 12 * the License, or (at your option) any later version. | |
| 13 * | |
| 14 * This program is distributed in the hope that it will be useful, but | |
| 15 * WITHOUT ANY WARRANTY; without even the implied warranty of | |
| 16 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU | |
| 17 * Affero General Public License for more details. | |
| 18 * | |
| 19 * You should have received a copy of the GNU Affero General Public License | |
| 20 * along with this program. If not, see <http://www.gnu.org/licenses/>. | |
| 21 **/ | |
| 22 | |
| 23 | |
| 24 #include "../Framework/PrecompiledHeadersWSI.h" | |
| 25 #include "IIIF.h" | |
| 26 | |
| 27 #include "DicomPyramidCache.h" | |
| 28 #include "RawTile.h" | |
| 29 #include "../Resources/Orthanc/Plugins/OrthancPluginCppWrapper.h" | |
| 30 | |
| 31 #include <Images/Image.h> | |
| 32 #include <Images/ImageProcessing.h> | |
| 33 #include <Logging.h> | |
| 265 | 34 #include <SerializationToolbox.h> |
| 261 | 35 |
| 36 #include <boost/math/special_functions/round.hpp> | |
| 37 | |
| 38 | |
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39 static const char* const ROWS = "0028,0010"; |
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40 static const char* const COLUMNS = "0028,0011"; |
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41 |
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42 |
| 261 | 43 static std::string iiifPublicUrl_; |
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44 static bool iiifForcePowersOfTwoScaleFactors_ = false; |
| 261 | 45 |
| 46 | |
| 288 | 47 void ServeIIIFTiledImageInfo(OrthancPluginRestOutput* output, |
| 48 const char* url, | |
| 49 const OrthancPluginHttpRequest* request) | |
| 261 | 50 { |
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51 const std::string seriesId(request->groups[0]); |
| 261 | 52 |
| 53 LOG(INFO) << "IIIF: Image API call to whole-slide pyramid of series " << seriesId; | |
| 54 | |
| 55 OrthancWSI::DicomPyramidCache::Locker locker(seriesId); | |
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56 const OrthancWSI::ITiledPyramid& pyramid = locker.GetPyramid(); |
| 261 | 57 |
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58 if (pyramid.GetLevelCount() == 0) |
| 261 | 59 { |
| 60 throw Orthanc::OrthancException(Orthanc::ErrorCode_InternalError); | |
| 61 } | |
| 62 | |
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63 if (pyramid.GetTileWidth(0) != pyramid.GetTileHeight(0)) |
| 261 | 64 { |
| 65 throw Orthanc::OrthancException(Orthanc::ErrorCode_IncompatibleImageFormat, | |
| 66 "IIIF doesn't support non-isotropic tile sizes"); | |
| 67 } | |
| 68 | |
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69 for (unsigned int i = 1; i < pyramid.GetLevelCount(); i++) |
| 261 | 70 { |
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71 if (pyramid.GetTileWidth(i) != pyramid.GetTileWidth(0) || |
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72 pyramid.GetTileHeight(i) != pyramid.GetTileHeight(0)) |
| 261 | 73 { |
| 74 throw Orthanc::OrthancException(Orthanc::ErrorCode_IncompatibleImageFormat, | |
| 75 "IIIF doesn't support levels with varying tile sizes"); | |
| 76 } | |
| 77 } | |
| 78 | |
| 79 Json::Value sizes = Json::arrayValue; | |
| 80 Json::Value scaleFactors = Json::arrayValue; | |
| 81 | |
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82 unsigned int power = 1; |
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83 |
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84 for (unsigned int i = 0; i < pyramid.GetLevelCount(); i++) |
| 261 | 85 { |
| 86 /** | |
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87 * According to the IIIF Image API 3.0 specification, |
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88 * "scaleFactors" is: "The set of resolution scaling factors for |
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89 * the image's predefined tiles, expressed as POSITIVE INTEGERS by |
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90 * which to divide the full size of the image. For example, a |
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91 * scale factor of 4 indicates that the service can efficiently |
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92 * deliver images at 1/4 or 25% of the height and width of the |
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93 * full image." => We can only serve the levels for which the full |
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94 * width/height of the image is divisible by the width/height of |
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95 * the level. |
| 261 | 96 **/ |
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97 if (pyramid.GetLevelWidth(0) % pyramid.GetLevelWidth(i) == 0 && |
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98 pyramid.GetLevelHeight(0) % pyramid.GetLevelHeight(i) == 0) |
| 261 | 99 { |
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100 unsigned int scaleFactor = pyramid.GetLevelWidth(0) / pyramid.GetLevelWidth(i); |
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101 |
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102 if (!iiifForcePowersOfTwoScaleFactors_ || |
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103 scaleFactor == power) |
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104 { |
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105 Json::Value level; |
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106 level["width"] = pyramid.GetLevelWidth(i); |
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107 level["height"] = pyramid.GetLevelHeight(i); |
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108 sizes.append(level); |
| 261 | 109 |
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110 scaleFactors.append(scaleFactor); |
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111 |
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112 power *= 2; |
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113 } |
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114 else |
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115 { |
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116 LOG(WARNING) << "IIIF - Dropping level " << i << " of series " << seriesId |
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117 << ", as it doesn't follow the powers-of-two pattern"; |
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118 } |
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119 } |
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120 else |
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121 { |
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122 LOG(WARNING) << "IIIF - Dropping level " << i << " of series " << seriesId |
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123 << ", as the full width/height (" |
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124 << pyramid.GetLevelWidth(0) << "x" << pyramid.GetLevelHeight(0) |
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125 << ") of the image is not an integer multiple of the level width/height (" |
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126 << pyramid.GetLevelWidth(i) << "x" << pyramid.GetLevelHeight(i) << ")"; |
| 261 | 127 } |
| 128 } | |
| 129 | |
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130 /** |
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131 * Reversing the order of the "sizes" field seems to be necessary |
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132 * for recent version of OpenSeadragon (>= 4.1.0) and Mirador (>= |
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133 * 4.0.0). This fix was included in release 2.1 of the WSI plugin. |
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134 * https://github.com/openseadragon/openseadragon/issues/2379 |
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135 **/ |
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136 Json::Value reversedSizes = Json::arrayValue; |
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137 for (Json::Value::ArrayIndex i = sizes.size(); i > 0; i--) |
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138 { |
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139 reversedSizes.append(sizes[i - 1]); |
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140 } |
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141 |
| 261 | 142 Json::Value tiles; |
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143 tiles["width"] = pyramid.GetTileWidth(0); |
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144 tiles["height"] = pyramid.GetTileHeight(0); |
| 261 | 145 tiles["scaleFactors"] = scaleFactors; |
| 146 | |
| 147 Json::Value result; | |
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148 result["@context"] = "http://iiif.io/api/image/3/context.json"; |
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149 result["profile"] = "level0"; |
| 261 | 150 result["protocol"] = "http://iiif.io/api/image"; |
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151 result["type"] = "ImageService3"; |
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152 |
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153 result["id"] = iiifPublicUrl_ + "tiles/" + seriesId; |
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154 result["width"] = pyramid.GetLevelWidth(0); |
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155 result["height"] = pyramid.GetLevelHeight(0); |
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156 result["sizes"] = reversedSizes; |
| 261 | 157 result["tiles"].append(tiles); |
| 158 | |
| 159 std::string s = result.toStyledString(); | |
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160 OrthancPluginAnswerBuffer(OrthancPlugins::GetGlobalContext(), output, s.c_str(), s.size(), Orthanc::EnumerationToString(Orthanc::MimeType_Json)); |
| 261 | 161 } |
| 162 | |
| 163 | |
| 164 static unsigned int GetPhysicalTileWidth(const OrthancWSI::ITiledPyramid& pyramid, | |
| 165 unsigned int level) | |
| 166 { | |
| 167 return static_cast<unsigned int>(boost::math::iround( | |
| 168 static_cast<float>(pyramid.GetTileWidth(level)) * | |
| 169 static_cast<float>(pyramid.GetLevelWidth(0)) / | |
| 170 static_cast<float>(pyramid.GetLevelWidth(level)))); | |
| 171 } | |
| 172 | |
| 173 | |
| 174 static unsigned int GetPhysicalTileHeight(const OrthancWSI::ITiledPyramid& pyramid, | |
| 175 unsigned int level) | |
| 176 { | |
| 177 return static_cast<unsigned int>(boost::math::iround( | |
| 178 static_cast<float>(pyramid.GetTileHeight(level)) * | |
| 179 static_cast<float>(pyramid.GetLevelHeight(0)) / | |
| 180 static_cast<float>(pyramid.GetLevelHeight(level)))); | |
| 181 } | |
| 182 | |
| 183 | |
| 288 | 184 void ServeIIIFTiledImageTile(OrthancPluginRestOutput* output, |
| 185 const char* url, | |
| 186 const OrthancPluginHttpRequest* request) | |
| 261 | 187 { |
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188 const std::string seriesId(request->groups[0]); |
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189 const std::string region(request->groups[1]); |
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190 const std::string size(request->groups[2]); |
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191 const std::string rotation(request->groups[3]); |
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192 const std::string quality(request->groups[4]); |
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193 const std::string format(request->groups[5]); |
| 261 | 194 |
| 195 LOG(INFO) << "IIIF: Image API call to tile of series " << seriesId << ": " | |
| 196 << "region=" << region << "; size=" << size << "; rotation=" | |
| 197 << rotation << "; quality=" << quality << "; format=" << format; | |
| 198 | |
| 199 if (rotation != "0") | |
| 200 { | |
| 201 throw Orthanc::OrthancException(Orthanc::ErrorCode_NotImplemented, "IIIF - Unsupported rotation: " + rotation); | |
| 202 } | |
| 203 | |
| 204 if (quality != "default") | |
| 205 { | |
| 206 throw Orthanc::OrthancException(Orthanc::ErrorCode_NotImplemented, "IIIF - Unsupported quality: " + quality); | |
| 207 } | |
| 208 | |
| 209 if (format != "jpg") | |
| 210 { | |
| 211 throw Orthanc::OrthancException(Orthanc::ErrorCode_NotImplemented, "IIIF - Unsupported format: " + format); | |
| 212 } | |
| 213 | |
| 214 if (region == "full") | |
| 215 { | |
| 216 OrthancWSI::DicomPyramidCache::Locker locker(seriesId); | |
| 217 | |
| 218 OrthancWSI::ITiledPyramid& pyramid = locker.GetPyramid(); | |
| 219 const unsigned int level = pyramid.GetLevelCount() - 1; | |
| 220 | |
| 221 Orthanc::Image full(Orthanc::PixelFormat_RGB24, pyramid.GetLevelWidth(level), pyramid.GetLevelHeight(level), false); | |
| 222 Orthanc::ImageProcessing::Set(full, 255, 255, 255, 0); | |
| 223 | |
| 224 const unsigned int nx = OrthancWSI::CeilingDivision(pyramid.GetLevelWidth(level), pyramid.GetTileWidth(level)); | |
| 225 const unsigned int ny = OrthancWSI::CeilingDivision(pyramid.GetLevelHeight(level), pyramid.GetTileHeight(level)); | |
| 226 for (unsigned int ty = 0; ty < ny; ty++) | |
| 227 { | |
| 228 const unsigned int y = ty * pyramid.GetTileHeight(level); | |
| 229 const unsigned int height = std::min(pyramid.GetTileHeight(level), full.GetHeight() - y); | |
| 230 | |
| 231 for (unsigned int tx = 0; tx < nx; tx++) | |
| 232 { | |
| 233 const unsigned int x = tx * pyramid.GetTileWidth(level); | |
|
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234 |
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235 bool isEmpty; // Unused |
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236 std::unique_ptr<Orthanc::ImageAccessor> tile(pyramid.DecodeTile(isEmpty, level, tx, ty)); |
| 261 | 237 |
| 238 const unsigned int width = std::min(pyramid.GetTileWidth(level), full.GetWidth() - x); | |
| 239 | |
| 240 Orthanc::ImageAccessor source, target; | |
| 241 tile->GetRegion(source, 0, 0, width, height); | |
| 242 full.GetRegion(target, x, y, width, height); | |
| 243 | |
| 244 Orthanc::ImageProcessing::Copy(target, source); | |
| 245 } | |
| 246 } | |
| 247 | |
| 248 std::string encoded; | |
| 249 OrthancWSI::RawTile::Encode(encoded, full, Orthanc::MimeType_Jpeg); | |
| 250 | |
| 251 OrthancPluginAnswerBuffer(OrthancPlugins::GetGlobalContext(), output, encoded.c_str(), | |
| 252 encoded.size(), Orthanc::EnumerationToString(Orthanc::MimeType_Jpeg)); | |
| 253 } | |
| 254 else | |
| 255 { | |
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256 std::vector<std::string> tokens; |
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257 Orthanc::Toolbox::TokenizeString(tokens, region, ','); |
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258 |
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259 uint32_t regionX, regionY, regionWidth, regionHeight; |
| 261 | 260 |
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261 if (tokens.size() != 4 || |
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262 !Orthanc::SerializationToolbox::ParseUnsignedInteger32(regionX, tokens[0]) || |
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263 !Orthanc::SerializationToolbox::ParseUnsignedInteger32(regionY, tokens[1]) || |
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264 !Orthanc::SerializationToolbox::ParseUnsignedInteger32(regionWidth, tokens[2]) || |
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265 !Orthanc::SerializationToolbox::ParseUnsignedInteger32(regionHeight, tokens[3])) |
| 261 | 266 { |
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267 throw Orthanc::OrthancException(Orthanc::ErrorCode_NotImplemented, "IIIF - Invalid (x,y,width,height) region, found: " + region); |
| 261 | 268 } |
| 269 | |
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270 uint32_t cropWidth, cropHeight; |
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271 |
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272 Orthanc::Toolbox::TokenizeString(tokens, size, ','); |
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273 |
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274 bool ok = false; |
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275 if (tokens.size() == 2 && |
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276 Orthanc::SerializationToolbox::ParseUnsignedInteger32(cropWidth, tokens[0])) |
| 261 | 277 { |
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278 if (tokens[1].empty()) |
| 261 | 279 { |
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280 cropHeight = cropWidth; |
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281 ok = true; |
| 261 | 282 } |
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283 else if (Orthanc::SerializationToolbox::ParseUnsignedInteger32(cropHeight, tokens[1])) |
| 261 | 284 { |
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285 ok = true; |
| 261 | 286 } |
| 287 } | |
| 288 | |
| 289 if (!ok) | |
| 290 { | |
|
274
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291 throw Orthanc::OrthancException(Orthanc::ErrorCode_NotImplemented, "IIIF - Invalid (width,height) crop, found: " + size); |
| 261 | 292 } |
| 293 | |
| 294 std::unique_ptr<OrthancWSI::RawTile> rawTile; | |
| 295 std::unique_ptr<Orthanc::ImageAccessor> toCrop; | |
| 296 | |
| 297 { | |
| 298 OrthancWSI::DicomPyramidCache::Locker locker(seriesId); | |
| 299 | |
| 300 OrthancWSI::ITiledPyramid& pyramid = locker.GetPyramid(); | |
| 301 | |
| 302 unsigned int level; | |
| 303 for (level = 0; level < pyramid.GetLevelCount(); level++) | |
| 304 { | |
| 305 const unsigned int physicalTileWidth = GetPhysicalTileWidth(pyramid, level); | |
| 306 const unsigned int physicalTileHeight = GetPhysicalTileHeight(pyramid, level); | |
| 307 | |
| 308 if (regionX % physicalTileWidth == 0 && | |
| 309 regionY % physicalTileHeight == 0 && | |
|
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310 static_cast<unsigned int>(regionWidth) <= physicalTileWidth && |
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311 static_cast<unsigned int>(regionHeight) <= physicalTileHeight && |
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312 static_cast<unsigned int>(regionX + regionWidth) <= pyramid.GetLevelWidth(0) && |
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313 static_cast<unsigned int>(regionY + regionHeight) <= pyramid.GetLevelHeight(0)) |
| 261 | 314 { |
| 315 break; | |
| 316 } | |
| 317 } | |
| 318 | |
| 319 if (level == pyramid.GetLevelCount()) | |
| 320 { | |
| 321 throw Orthanc::OrthancException(Orthanc::ErrorCode_BadRequest, "IIIF - Cannot locate the level of interest"); | |
| 322 } | |
|
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323 else if (static_cast<unsigned int>(cropWidth) > pyramid.GetTileWidth(level)) |
| 261 | 324 { |
| 325 throw Orthanc::OrthancException(Orthanc::ErrorCode_BadRequest, "IIIF - Request for a cropping that is too large for the tile size"); | |
| 326 } | |
| 327 else | |
| 328 { | |
| 329 rawTile.reset(new OrthancWSI::RawTile(locker.GetPyramid(), level, | |
| 330 regionX / GetPhysicalTileWidth(pyramid, level), | |
| 331 regionY / GetPhysicalTileHeight(pyramid, level))); | |
| 332 | |
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333 assert(rawTile->GetTileWidth() == pyramid.GetTileWidth(level)); |
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334 assert(rawTile->GetTileHeight() == pyramid.GetTileHeight(level)); |
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335 |
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336 if (!rawTile->IsEmpty() && |
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337 (static_cast<unsigned int>(cropWidth) < pyramid.GetTileWidth(level) || |
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338 static_cast<unsigned int>(cropHeight) < pyramid.GetTileHeight(level))) |
| 261 | 339 { |
| 340 toCrop.reset(rawTile->Decode()); | |
| 341 rawTile.reset(NULL); | |
| 342 } | |
| 343 } | |
| 344 } | |
| 345 | |
| 346 if (rawTile.get() != NULL) | |
| 347 { | |
| 348 assert(toCrop.get() == NULL); | |
| 349 | |
|
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350 if (rawTile->IsEmpty()) |
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351 { |
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352 if (static_cast<unsigned int>(cropWidth) < rawTile->GetTileWidth() || |
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353 static_cast<unsigned int>(cropHeight) < rawTile->GetTileHeight()) |
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354 { |
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355 OrthancWSI::RawTile::AnswerBackgroundTile(output, static_cast<unsigned int>(cropWidth), static_cast<unsigned int>(cropHeight)); |
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356 } |
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357 else |
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358 { |
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359 OrthancWSI::RawTile::AnswerBackgroundTile(output, rawTile->GetTileWidth(), rawTile->GetTileHeight()); |
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360 } |
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361 } |
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362 else |
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363 { |
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364 // Level 0 Compliance of IIIF expects JPEG files |
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365 rawTile->Answer(output, Orthanc::MimeType_Jpeg); |
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366 } |
| 261 | 367 } |
| 368 else if (toCrop.get() != NULL) | |
| 369 { | |
| 370 assert(rawTile.get() == NULL); | |
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371 |
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372 if (static_cast<unsigned int>(cropWidth) > toCrop->GetWidth() || |
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373 static_cast<unsigned int>(cropHeight) > toCrop->GetHeight()) |
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374 { |
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375 throw Orthanc::OrthancException(Orthanc::ErrorCode_BadRequest, "IIIF - Asking to crop outside of the tile size"); |
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376 } |
| 261 | 377 |
| 378 Orthanc::ImageAccessor cropped; | |
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379 toCrop->GetRegion(cropped, 0, 0, cropWidth, cropHeight); |
| 261 | 380 |
| 381 std::string encoded; | |
| 382 OrthancWSI::RawTile::Encode(encoded, cropped, Orthanc::MimeType_Jpeg); | |
| 383 | |
| 384 OrthancPluginAnswerBuffer(OrthancPlugins::GetGlobalContext(), output, encoded.c_str(), | |
| 385 encoded.size(), Orthanc::EnumerationToString(Orthanc::MimeType_Jpeg)); | |
| 386 } | |
| 387 else | |
| 388 { | |
| 389 throw Orthanc::OrthancException(Orthanc::ErrorCode_InternalError); | |
| 390 } | |
| 391 } | |
| 392 } | |
| 393 | |
| 394 | |
| 265 | 395 static void AddCanvas(Json::Value& manifest, |
| 396 const std::string& seriesId, | |
| 397 const std::string& imageService, | |
| 398 unsigned int page, | |
| 399 unsigned int width, | |
| 400 unsigned int height, | |
| 401 const std::string& description) | |
| 402 { | |
| 403 const std::string base = iiifPublicUrl_ + seriesId; | |
| 404 | |
| 405 Json::Value service; | |
| 406 service["id"] = iiifPublicUrl_ + imageService; | |
| 407 service["profile"] = "level0"; | |
| 408 service["type"] = "ImageService3"; | |
| 409 | |
| 410 Json::Value body; | |
| 411 body["id"] = iiifPublicUrl_ + imageService + "/full/max/0/default.jpg"; | |
| 412 body["type"] = "Image"; | |
| 413 body["format"] = Orthanc::EnumerationToString(Orthanc::MimeType_Jpeg); | |
| 414 body["height"] = height; | |
| 415 body["width"] = width; | |
| 416 body["service"].append(service); | |
| 417 | |
| 418 Json::Value annotation; | |
| 419 annotation["id"] = base + "/annotation/p" + boost::lexical_cast<std::string>(page) + "-image"; | |
| 420 annotation["type"] = "Annotation"; | |
| 421 annotation["motivation"] = "painting"; | |
| 422 annotation["body"] = body; | |
| 423 annotation["target"] = base + "/canvas/p" + boost::lexical_cast<std::string>(page); | |
| 424 | |
| 425 Json::Value annotationPage; | |
| 426 annotationPage["id"] = base + "/page/p" + boost::lexical_cast<std::string>(page) + "/1"; | |
| 427 annotationPage["type"] = "AnnotationPage"; | |
| 428 annotationPage["items"].append(annotation); | |
| 429 | |
| 430 Json::Value canvas; | |
| 431 canvas["id"] = annotation["target"]; | |
| 432 canvas["type"] = "Canvas"; | |
| 433 canvas["width"] = width; | |
| 434 canvas["height"] = height; | |
| 435 canvas["label"]["en"].append(description); | |
| 436 canvas["items"].append(annotationPage); | |
| 437 | |
| 438 manifest["items"].append(canvas); | |
| 439 } | |
| 440 | |
| 441 | |
| 288 | 442 void ServeIIIFManifest(OrthancPluginRestOutput* output, |
| 443 const char* url, | |
| 444 const OrthancPluginHttpRequest* request) | |
| 261 | 445 { |
| 265 | 446 static const char* const KEY_INSTANCES = "Instances"; |
| 447 static const char* const SOP_CLASS_UID = "0008,0016"; | |
| 448 static const char* const SLICES_SHORT = "SlicesShort"; | |
| 261 | 449 |
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450 const std::string seriesId(request->groups[0]); |
| 261 | 451 |
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452 LOG(INFO) << "IIIF: Presentation API call to series " << seriesId; |
| 261 | 453 |
| 454 Json::Value study, series; | |
| 455 if (!OrthancPlugins::RestApiGet(series, "/series/" + seriesId, false) || | |
| 456 !OrthancPlugins::RestApiGet(study, "/series/" + seriesId + "/study", false)) | |
| 457 { | |
| 458 throw Orthanc::OrthancException(Orthanc::ErrorCode_UnknownResource); | |
| 459 } | |
| 460 | |
| 265 | 461 if (study.type() != Json::objectValue || |
| 462 series.type() != Json::objectValue || | |
| 463 !series.isMember(KEY_INSTANCES) || | |
| 464 series[KEY_INSTANCES].type() != Json::arrayValue || | |
| 465 series[KEY_INSTANCES].size() == 0u || | |
| 466 series[KEY_INSTANCES][0].type() != Json::stringValue) | |
| 261 | 467 { |
| 265 | 468 throw Orthanc::OrthancException(Orthanc::ErrorCode_InternalError); |
| 261 | 469 } |
| 470 | |
| 265 | 471 Json::Value oneInstance; |
| 472 if (!OrthancPlugins::RestApiGet(oneInstance, "/instances/" + series[KEY_INSTANCES][0].asString() + "/tags?short", false) || | |
| 473 oneInstance.type() != Json::objectValue || | |
| 474 !oneInstance.isMember(SOP_CLASS_UID) || | |
| 475 oneInstance[SOP_CLASS_UID].type() != Json::stringValue) | |
| 476 { | |
| 477 throw Orthanc::OrthancException(Orthanc::ErrorCode_UnknownResource); | |
| 478 } | |
| 479 | |
| 480 const std::string sopClassUid = Orthanc::Toolbox::StripSpaces(oneInstance[SOP_CLASS_UID].asString()); | |
| 481 | |
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482 const std::string base = iiifPublicUrl_ + "series/" + seriesId; |
| 261 | 483 |
| 484 Json::Value manifest; | |
| 485 manifest["@context"] = "http://iiif.io/api/presentation/3/context.json"; | |
| 486 manifest["id"] = base + "/manifest.json"; | |
| 487 manifest["type"] = "Manifest"; | |
| 265 | 488 manifest["label"]["en"].append(study["MainDicomTags"]["StudyDate"].asString() + " - " + |
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489 series["MainDicomTags"]["Modality"].asString() + " - " + |
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490 study["MainDicomTags"]["StudyDescription"].asString() + " - " + |
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491 series["MainDicomTags"]["SeriesDescription"].asString()); |
| 261 | 492 |
| 265 | 493 if (sopClassUid == OrthancWSI::VL_WHOLE_SLIDE_MICROSCOPY_IMAGE_STORAGE_IOD) |
| 494 { | |
| 495 /** | |
| 496 * This is based on IIIF cookbook: "Support Deep Viewing with Basic | |
| 497 * Use of a IIIF Image Service." | |
| 498 * https://iiif.io/api/cookbook/recipe/0005-image-service/ | |
| 499 **/ | |
| 500 unsigned int width, height; | |
| 501 | |
| 502 { | |
| 503 OrthancWSI::DicomPyramidCache::Locker locker(seriesId); | |
| 504 width = locker.GetPyramid().GetLevelWidth(0); | |
| 505 height = locker.GetPyramid().GetLevelHeight(0); | |
| 506 } | |
| 507 | |
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508 AddCanvas(manifest, seriesId, "tiles/" + seriesId, 1, width, height, ""); |
| 265 | 509 } |
| 510 else | |
| 511 { | |
| 512 /** | |
| 513 * This is based on IIIF cookbook: "Simple Manifest - Book" | |
| 514 * https://iiif.io/api/cookbook/recipe/0009-book-1/ | |
| 515 **/ | |
| 516 | |
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517 manifest["behavior"].append("individuals"); |
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518 |
| 265 | 519 uint32_t width, height; |
| 520 if (!oneInstance.isMember(COLUMNS) || | |
| 521 !oneInstance.isMember(ROWS) || | |
| 522 oneInstance[COLUMNS].type() != Json::stringValue || | |
| 523 oneInstance[ROWS].type() != Json::stringValue || | |
| 524 !Orthanc::SerializationToolbox::ParseFirstUnsignedInteger32(width, oneInstance[COLUMNS].asString()) || | |
| 525 !Orthanc::SerializationToolbox::ParseFirstUnsignedInteger32(height, oneInstance[ROWS].asString())) | |
| 526 { | |
| 527 throw Orthanc::OrthancException(Orthanc::ErrorCode_UnknownResource); | |
| 528 } | |
| 261 | 529 |
| 265 | 530 Json::Value orderedSlices; |
| 531 if (!OrthancPlugins::RestApiGet(orderedSlices, "/series/" + seriesId + "/ordered-slices", false)) | |
| 532 { | |
| 533 throw Orthanc::OrthancException(Orthanc::ErrorCode_UnknownResource); | |
| 534 } | |
| 535 | |
| 536 if (orderedSlices.type() != Json::objectValue || | |
| 537 !orderedSlices.isMember(SLICES_SHORT) || | |
| 538 orderedSlices[SLICES_SHORT].type() != Json::arrayValue) | |
| 539 { | |
| 540 throw Orthanc::OrthancException(Orthanc::ErrorCode_InternalError); | |
| 541 } | |
| 542 | |
| 543 const Json::Value& slicesShort = orderedSlices[SLICES_SHORT]; | |
| 544 | |
| 545 unsigned int page = 1; | |
| 546 for (Json::ArrayIndex instance = 0; instance < slicesShort.size(); instance++) | |
| 547 { | |
| 548 if (slicesShort[instance].type() != Json::arrayValue || | |
| 549 slicesShort[instance].size() != 3u || | |
| 550 slicesShort[instance][0].type() != Json::stringValue || | |
| 551 slicesShort[instance][1].type() != Json::intValue || | |
| 552 slicesShort[instance][2].type() != Json::intValue) | |
| 553 { | |
| 554 throw Orthanc::OrthancException(Orthanc::ErrorCode_InternalError); | |
| 555 } | |
| 556 | |
| 557 const std::string instanceId = slicesShort[instance][0].asString(); | |
| 558 const unsigned int start = slicesShort[instance][1].asUInt(); | |
| 559 const unsigned int count = slicesShort[instance][2].asUInt(); | |
| 560 | |
| 561 for (unsigned int frame = start; frame < start + count; frame++, page++) | |
| 562 { | |
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563 AddCanvas(manifest, instanceId, "frames/" + instanceId + "/" + boost::lexical_cast<std::string>(frame), |
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564 page, width, height, ""); |
| 265 | 565 } |
| 566 } | |
| 567 } | |
| 261 | 568 |
| 569 std::string s = manifest.toStyledString(); | |
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570 OrthancPluginAnswerBuffer(OrthancPlugins::GetGlobalContext(), output, s.c_str(), s.size(), Orthanc::EnumerationToString(Orthanc::MimeType_Json)); |
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571 } |
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572 |
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573 |
| 288 | 574 void ServeIIIFFrameInfo(OrthancPluginRestOutput* output, |
| 575 const char* url, | |
| 576 const OrthancPluginHttpRequest* request) | |
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577 { |
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578 const std::string instanceId(request->groups[0]); |
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579 const std::string frame(request->groups[1]); |
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580 |
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581 LOG(INFO) << "IIIF: Image API call to manifest of instance " << instanceId << " at frame " << frame; |
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582 |
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583 Json::Value instance; |
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584 if (!OrthancPlugins::RestApiGet(instance, "/instances/" + instanceId + "/tags?short", false)) |
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585 { |
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586 throw Orthanc::OrthancException(Orthanc::ErrorCode_UnknownResource); |
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587 } |
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588 |
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589 uint32_t width, height; |
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590 if (!instance.isMember(COLUMNS) || |
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591 !instance.isMember(ROWS) || |
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592 instance[COLUMNS].type() != Json::stringValue || |
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593 instance[ROWS].type() != Json::stringValue || |
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594 !Orthanc::SerializationToolbox::ParseFirstUnsignedInteger32(width, instance[COLUMNS].asString()) || |
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595 !Orthanc::SerializationToolbox::ParseFirstUnsignedInteger32(height, instance[ROWS].asString())) |
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596 { |
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597 throw Orthanc::OrthancException(Orthanc::ErrorCode_UnknownResource); |
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598 } |
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599 |
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600 Json::Value tile; |
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601 tile["height"] = height; |
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602 tile["width"] = width; |
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603 tile["scaleFactors"].append(1); |
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604 |
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605 Json::Value result; |
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606 result["@context"] = "http://iiif.io/api/image/3/context.json"; |
| 290 | 607 result["profile"] = "level0"; |
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608 result["protocol"] = "http://iiif.io/api/image"; |
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609 result["type"] = "ImageService3"; |
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610 |
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611 result["id"] = iiifPublicUrl_ + "frames/" + instanceId + "/" + frame; |
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612 result["width"] = width; |
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613 result["height"] = height; |
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614 result["tiles"].append(tile); |
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615 |
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616 std::string s = result.toStyledString(); |
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617 OrthancPluginAnswerBuffer(OrthancPlugins::GetGlobalContext(), output, s.c_str(), s.size(), Orthanc::EnumerationToString(Orthanc::MimeType_Json)); |
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618 } |
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619 |
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620 |
| 288 | 621 void ServeIIIFFrameImage(OrthancPluginRestOutput* output, |
| 622 const char* url, | |
| 623 const OrthancPluginHttpRequest* request) | |
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624 { |
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625 const std::string instanceId(request->groups[0]); |
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626 const std::string frame(request->groups[1]); |
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627 |
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628 LOG(INFO) << "IIIF: Image API call to JPEG of instance " << instanceId << " at frame " << frame; |
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629 |
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630 std::map<std::string, std::string> httpHeaders; |
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631 httpHeaders["Accept"] = Orthanc::EnumerationToString(Orthanc::MimeType_Jpeg); |
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632 |
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633 std::string jpeg; |
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634 if (!OrthancPlugins::RestApiGetString(jpeg, "/instances/" + instanceId + "/frames/" + frame + "/preview", httpHeaders, false)) |
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635 { |
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636 throw Orthanc::OrthancException(Orthanc::ErrorCode_UnknownResource); |
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637 } |
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638 |
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639 OrthancPluginAnswerBuffer(OrthancPlugins::GetGlobalContext(), output, jpeg.empty() ? NULL : jpeg.c_str(), |
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640 jpeg.size(), Orthanc::EnumerationToString(Orthanc::MimeType_Jpeg)); |
| 261 | 641 } |
| 642 | |
| 643 | |
| 644 void InitializeIIIF(const std::string& iiifPublicUrl) | |
| 645 { | |
| 646 iiifPublicUrl_ = iiifPublicUrl; | |
| 647 | |
|
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648 OrthancPlugins::RegisterRestCallback<ServeIIIFTiledImageInfo>("/wsi/iiif/tiles/([0-9a-f-]+)/info.json", true); |
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649 OrthancPlugins::RegisterRestCallback<ServeIIIFTiledImageTile>("/wsi/iiif/tiles/([0-9a-f-]+)/([0-9a-z,:]+)/([0-9a-z,!:]+)/([0-9,!]+)/([a-z]+)\\.([a-z]+)", true); |
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650 OrthancPlugins::RegisterRestCallback<ServeIIIFManifest>("/wsi/iiif/series/([0-9a-f-]+)/manifest.json", true); |
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651 OrthancPlugins::RegisterRestCallback<ServeIIIFFrameInfo>("/wsi/iiif/frames/([0-9a-f-]+)/([0-9]+)/info.json", true); |
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652 OrthancPlugins::RegisterRestCallback<ServeIIIFFrameImage>("/wsi/iiif/frames/([0-9a-f-]+)/([0-9]+)/full/max/0/default.jpg", true); |
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654 |
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added SetIIIFForcePowersOfTwoScaleFactors()
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655 void SetIIIFForcePowersOfTwoScaleFactors(bool force) |
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added SetIIIFForcePowersOfTwoScaleFactors()
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656 { |
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657 iiifForcePowersOfTwoScaleFactors_ = force; |
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658 } |