annotate Framework/Inputs/HierarchicalTiff.h @ 296:559499b80da8

refactoring
author Sebastien Jodogne <s.jodogne@gmail.com>
date Tue, 18 Jul 2023 06:45:44 +0200
parents 20a730889ae2
children c1687b8fc800
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
0
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1 /**
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
2 * Orthanc - A Lightweight, RESTful DICOM Store
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
3 * Copyright (C) 2012-2016 Sebastien Jodogne, Medical Physics
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
4 * Department, University Hospital of Liege, Belgium
254
20a730889ae2 upgrade to 2023
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 242
diff changeset
5 * Copyright (C) 2017-2023 Osimis S.A., Belgium
20a730889ae2 upgrade to 2023
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 242
diff changeset
6 * Copyright (C) 2021-2023 Sebastien Jodogne, ICTEAM UCLouvain, Belgium
0
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
7 *
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
8 * This program is free software: you can redistribute it and/or
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
9 * modify it under the terms of the GNU Affero General Public License
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
10 * as published by the Free Software Foundation, either version 3 of
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
11 * the License, or (at your option) any later version.
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
12 *
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
13 * This program is distributed in the hope that it will be useful, but
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
14 * WITHOUT ANY WARRANTY; without even the implied warranty of
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
15 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
16 * Affero General Public License for more details.
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
17 *
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
18 * You should have received a copy of the GNU Affero General Public License
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
19 * along with this program. If not, see <http://www.gnu.org/licenses/>.
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
20 **/
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
21
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
22
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
23 #pragma once
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
24
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
25 #include "PyramidWithRawTiles.h"
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
26
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
27 #include <tiff.h>
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
28 #include <tiffio.h>
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
29 #include <vector>
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
30 #include <boost/thread.hpp>
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
31
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
32 namespace OrthancWSI
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
33 {
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
34 class HierarchicalTiff : public PyramidWithRawTiles
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
35 {
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
36 private:
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
37 struct Level
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
38 {
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
39 tdir_t directory_;
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
40 unsigned int width_;
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
41 unsigned int height_;
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
42 std::string headers_;
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
43
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
44 Level(TIFF* tiff,
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
45 tdir_t directory,
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
46 unsigned int width,
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
47 unsigned int height);
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
48 };
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
49
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
50 struct Comparator;
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
51
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
52 boost::mutex mutex_;
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
53 TIFF* tiff_;
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
54 Orthanc::PixelFormat pixelFormat_;
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
55 ImageCompression compression_;
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
56 unsigned int tileWidth_;
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
57 unsigned int tileHeight_;
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
58 std::vector<Level> levels_;
166
f0dac1e8f736 access to photometric interpretation of source pyramids
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 157
diff changeset
59 Orthanc::PhotometricInterpretation photometric_;
0
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
60
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
61 void Finalize();
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
62
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
63 void CheckLevel(unsigned int level) const;
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
64
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
65 bool Initialize();
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
66
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
67 public:
145
0b7e7be7d655 cppcheck
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 115
diff changeset
68 explicit HierarchicalTiff(const std::string& path);
0
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
69
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
70 virtual ~HierarchicalTiff()
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
71 {
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
72 Finalize();
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
73 }
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
74
216
c35a3a0627b9 cppcheck
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 214
diff changeset
75 virtual unsigned int GetLevelCount() const ORTHANC_OVERRIDE
0
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
76 {
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
77 return levels_.size();
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
78 }
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
79
216
c35a3a0627b9 cppcheck
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 214
diff changeset
80 virtual unsigned int GetLevelWidth(unsigned int level) const ORTHANC_OVERRIDE;
0
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
81
216
c35a3a0627b9 cppcheck
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 214
diff changeset
82 virtual unsigned int GetLevelHeight(unsigned int level) const ORTHANC_OVERRIDE;
0
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
83
217
20bc074ec19a Viewer can display DICOM pyramids whose tile sizes vary across levels
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 216
diff changeset
84 virtual unsigned int GetTileWidth(unsigned int level) const ORTHANC_OVERRIDE
0
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
85 {
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
86 return tileWidth_;
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
87 }
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
88
217
20bc074ec19a Viewer can display DICOM pyramids whose tile sizes vary across levels
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 216
diff changeset
89 virtual unsigned int GetTileHeight(unsigned int level) const ORTHANC_OVERRIDE
0
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
90 {
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
91 return tileHeight_;
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
92 }
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
93
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
94 virtual bool ReadRawTile(std::string& tile,
57
91fc9583b2de big refactoring to support sparse tiling
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
95 ImageCompression& compression,
0
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
96 unsigned int level,
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
97 unsigned int tileX,
216
c35a3a0627b9 cppcheck
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 214
diff changeset
98 unsigned int tileY) ORTHANC_OVERRIDE;
0
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
99
216
c35a3a0627b9 cppcheck
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 214
diff changeset
100 virtual Orthanc::PixelFormat GetPixelFormat() const ORTHANC_OVERRIDE
0
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
101 {
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
102 return pixelFormat_;
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
103 }
57
91fc9583b2de big refactoring to support sparse tiling
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
104
216
c35a3a0627b9 cppcheck
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 214
diff changeset
105 virtual Orthanc::PhotometricInterpretation GetPhotometricInterpretation() const ORTHANC_OVERRIDE
166
f0dac1e8f736 access to photometric interpretation of source pyramids
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 157
diff changeset
106 {
f0dac1e8f736 access to photometric interpretation of source pyramids
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 157
diff changeset
107 return photometric_;
f0dac1e8f736 access to photometric interpretation of source pyramids
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 157
diff changeset
108 }
f0dac1e8f736 access to photometric interpretation of source pyramids
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 157
diff changeset
109
57
91fc9583b2de big refactoring to support sparse tiling
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
110 ImageCompression GetImageCompression()
91fc9583b2de big refactoring to support sparse tiling
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
111 {
91fc9583b2de big refactoring to support sparse tiling
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
112 return compression_;
91fc9583b2de big refactoring to support sparse tiling
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
113 }
296
559499b80da8 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 254
diff changeset
114
559499b80da8 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 254
diff changeset
115 static bool GetCurrentDirectoryInformation(TIFF* tiff,
559499b80da8 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 254
diff changeset
116 ImageCompression& compression,
559499b80da8 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 254
diff changeset
117 Orthanc::PixelFormat& pixelFormat,
559499b80da8 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 254
diff changeset
118 Orthanc::PhotometricInterpretation& photometric);
0
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
119 };
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
120 }