Mercurial > hg > orthanc-tests

annotate Plugins/Worklists/Run.py @ 660:2f6686a3cd16 default tip

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conditional test
author Alain Mazy <am@orthanc.team>
date Mon, 24 Jun 2024 18:32:13 +0200
parents 5d7b6e43ab7d
children
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a8e49d30f634 compatibility of Plugins/Worklists/Run.py with python 3
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1 #!/usr/bin/python3
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2 # -*- coding: utf-8 -*-
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3
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4
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5 # Orthanc - A Lightweight, RESTful DICOM Store
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6 # Copyright (C) 2012-2016 Sebastien Jodogne, Medical Physics
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7 # Department, University Hospital of Liege, Belgium
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8 # Copyright (C) 2017-2023 Osimis S.A., Belgium
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9 # Copyright (C) 2024-2024 Orthanc Team SRL, Belgium
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10 # Copyright (C) 2021-2024 Sebastien Jodogne, ICTEAM UCLouvain, Belgium
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11 #
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12 # This program is free software: you can redistribute it and/or
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13 # modify it under the terms of the GNU General Public License as
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14 # published by the Free Software Foundation, either version 3 of the
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15 # License, or (at your option) any later version.
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16 #
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17 # This program is distributed in the hope that it will be useful, but
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18 # WITHOUT ANY WARRANTY; without even the implied warranty of
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19 # MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
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20 # General Public License for more details.
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21 #
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22 # You should have received a copy of the GNU General Public License
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23 # along with this program. If not, see <http://www.gnu.org/licenses/>.
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25
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26 import argparse
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27 import os
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28 import pprint
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29 import re
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30 import subprocess
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31 import sys
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32 import tempfile
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33 import unittest
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34 from shutil import copyfile
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36 sys.path.append(os.path.join(os.path.dirname(__file__), '..', '..', 'Tests'))
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37 from Toolbox import *
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40 ##
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41 ## Parse the command-line arguments
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42 ##
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44 parser = argparse.ArgumentParser(description = 'Run the integration tests for the DICOM worklist plugin.')
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45
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46 parser.add_argument('--server',
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47 default = 'localhost',
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48 help = 'Address of the Orthanc server to test')
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49 parser.add_argument('--rest',
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50 type = int,
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51 default = 8042,
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52 help = 'Port to the REST API')
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53 parser.add_argument('--username',
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54 default = 'alice',
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55 help = 'Username to the REST API')
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56 parser.add_argument('--password',
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57 default = 'orthanctest',
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58 help = 'Password to the REST API')
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59 parser.add_argument('--dicom',
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60 type = int,
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61 default = 4242,
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62 help = 'DICOM port of the Orthanc instance to test')
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63 parser.add_argument('options', metavar = 'N', nargs = '*',
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64 help='Arguments to Python unittest')
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66 args = parser.parse_args()
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70 ORTHANC = DefineOrthanc(server = args.server,
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71 username = args.username,
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72 password = args.password,
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73 restPort = args.rest)
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77 ##
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78 ## Toolbox
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79 ##
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80
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81 DATABASE = os.path.abspath(os.path.normpath(os.path.join(os.path.dirname(__file__), '..', '..', 'Database', 'Worklists')))
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82 WORKING = os.path.join(DATABASE, 'Working')
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83
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84 print('Database directory: %s' % DATABASE)
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85 print('Working directory: %s' % WORKING)
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87 try:
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88 os.mkdir(WORKING)
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89 except Exception as e:
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90 # The working folder has already been created
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91 pass
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93 def ClearDatabase():
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94 for f in os.listdir(WORKING):
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95 if f != 'lockfile':
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96 os.remove(os.path.join(WORKING, f))
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98 def AddToDatabase(worklist):
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99 extension = os.path.splitext(worklist)[1].lower()
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100 source = os.path.join(DATABASE, worklist)
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101 target = os.path.join(WORKING, os.path.basename(worklist) + '.wl')
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102
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103 if extension == '.dump':
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104 subprocess.check_call([ 'dump2dcm', '--write-xfer-little', source, target ])
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105 else:
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106 copyfile(source, target)
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109 def RunQuery(source, ignoreTags):
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110 with tempfile.NamedTemporaryFile() as f:
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111 subprocess.check_call([ 'dump2dcm', '--write-xfer-little',
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112 os.path.join(DATABASE, source), f.name ])
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114 a = subprocess.check_output([ 'findscu', '-v', '--call', 'ORTHANC', '-aet', 'ORTHANCTEST',
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115 args.server, str(args.dicom), f.name ],
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116 stderr = subprocess.STDOUT).splitlines()
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117
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118 answers = []
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119 current = []
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120 isQuery = True
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121
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122 for line in a:
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123 as_ascii = line.decode('ascii', errors='ignore')
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124
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125 if as_ascii.startswith('E:'):
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126 raise Exception('Error while running findscu')
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127
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128 if (as_ascii.startswith('I: ---') or
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129 as_ascii.startswith('W: ---')):
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130 if isQuery:
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131 isQuery = False
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132 else:
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133 # This is a separator between DICOM datasets
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134 if len(current) > 0:
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135 answers.append(current)
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136 current = []
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137
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138 elif (as_ascii.startswith('I: (') or
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139 as_ascii.startswith('W: (')):
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140
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141 # This is a tag
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142 if not isQuery:
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143 tag = as_ascii[4:13].lower()
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144 if not tag in ignoreTags:
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145 line_without_comment = re.sub(b'\s*#.*', b'', line)
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146 line_without_comment = line_without_comment.replace(b'\0', b'')
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147 current.append(line_without_comment[3:])
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148
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149 if len(current) > 0:
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150 answers.append(current)
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151
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152 return answers
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153
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154 def CompareAnswers(expected, actual):
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155 if len(expected) != len(actual):
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156 return False
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157
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158 if len(expected) == 0:
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159 return True
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160
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161 for i in range(len(expected)):
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162 for j in range(len(actual)):
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163 decoded = list(map(lambda x: x.decode('utf-8'), actual[j]))
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164
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165 if expected[i] == decoded:
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166 return True
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167
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168 return False
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169
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170
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171 def ParseTopLevelTags(answer):
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172 tags = {}
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173 for line in answer:
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174 as_ascii = line.decode('ascii', errors='ignore')
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175 tag = as_ascii[1:10]
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176 start = line.find(b'[')
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177 end = line.rfind(b']')
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178
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179 tags[tag] = line[start + 1 : end].strip()
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180
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181 return tags
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182
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183
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184 ##
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185 ## The tests
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186 ##
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187
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188 class Orthanc(unittest.TestCase):
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189 def setUp(self):
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190 if (sys.version_info >= (3, 0)):
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191 # Remove annoying warnings about unclosed socket in Python 3
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192 import warnings
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193 warnings.simplefilter("ignore", ResourceWarning)
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194
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195 ClearDatabase()
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196 DoPost(ORTHANC, '/tools/execute-script', 'function IncomingWorklistRequestFilter(query, origin) return query end', 'application/lua')
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197
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198
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199 def test_single(self):
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200 for db in range(1, 11):
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201 ClearDatabase()
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202 AddToDatabase('Dcmtk/Database/wklist%d.dump' % db)
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203
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204 for query in range(0, 13):
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205 answers = RunQuery('Dcmtk/Queries/wlistqry%d.dump' % query, [
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206 '0008,0005',
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207 '0040,0004',
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208 '0040,0005',
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209 '0040,0020',
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210 ])
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211
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212 with open(os.path.join('%s/Dcmtk/Expected/single-%d-%d.json' % (DATABASE, db, query)), 'r') as f:
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213 expected = json.loads(f.read())
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214 self.assertTrue(CompareAnswers(expected, answers))
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215
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216
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217 def test_all(self):
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218 ClearDatabase()
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219
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220 for db in range(1, 11):
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221 AddToDatabase('Dcmtk/Database/wklist%d.dump' % db)
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222
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223 for query in range(0, 13):
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224 answers = RunQuery('Dcmtk/Queries/wlistqry%d.dump' % query, [
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225 '0008,0005',
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226 '0040,0004',
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227 '0040,0005',
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228 '0040,0020',
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229 ])
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230
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231 with open(os.path.join('%s/Dcmtk/Expected/all-%d.json' % (DATABASE, query)), 'r') as f:
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232 expected = json.loads(f.read())
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233 self.assertTrue(CompareAnswers(expected, answers))
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234
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235
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236 def test_vet(self):
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237 AddToDatabase('Sequences/STATION_AET/orig.7705.dump')
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238 AddToDatabase('Sequences/STATION_AET/orig.7814.dump')
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239 AddToDatabase('Sequences/STATION_AET/orig.7814.without.seq.dump')
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240
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241 self.assertEqual(2, len(RunQuery('Sequences/Queries/7814.without.length.dump', [])))
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242 self.assertEqual(2, len(RunQuery('Sequences/Queries/7814.without.seq.dump', [])))
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243 self.assertEqual(2, len(RunQuery('Sequences/Queries/orig.7814.dump', [])))
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244
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245 def test_private_creator(self):
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246 AddToDatabase('private-creator-wl.dump')
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247
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248 self.assertEqual(1, len(RunQuery('private-creator-query.dump', [])))
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249
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250
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251 @unittest.skip("This test requires to enable option 'FilterIssuerAet' in the sample worklist plugin")
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252 def test_filter_issuer_aet(self):
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253 AddToDatabase('Sequences/STATION_AET/orig.7814.dump')
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254 AddToDatabase('Sequences/STATION_AET/orig.7814.other.station.dump')
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255
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256 self.assertEqual(1, len(RunQuery('Sequences/Queries/7814.without.station.aet.dump', [])))
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257
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258 def test_filter_issuer_aet_from_lua(self):
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259 AddToDatabase('Sequences/STATION_AET/orig.7814.dump') # targeted at STATION_AET
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260 AddToDatabase('Sequences/STATION_AET/orig.7814.other.station.dump') # targeted at ORTHANC_TEST
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261
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262 self.assertEqual(2, len(RunQuery('Sequences/Queries/7814.without.station.aet.dump', []))) # query is not targeting any station -> match all
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263 InstallLuaScript(ORTHANC, "\
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264 function IncomingWorklistRequestFilter(query, origin)\
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265 query['0040,0100'][1]['0040,0001'] = origin['RemoteAet']\
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266 return query\
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267 end");
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268
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269 self.assertEqual(1, len(RunQuery('Sequences/Queries/7814.without.station.aet.dump', []))) # now, query is targeting ORTHANCTEST -> match one
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270
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271
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272 def test_remove_aet_from_query(self):
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273 AddToDatabase('Sequences/NO_STATION_AET/orig.7814.other.station.dump') # targeted at ORTHANCTEST
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274
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275 self.assertEqual(0, len(RunQuery('Sequences/Queries/orig.7814.dump', []))) # query is targeting STATION_AET -> will not match
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276 InstallLuaScript(ORTHANC, "\
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277 function IncomingWorklistRequestFilter(query, origin)\
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278 query['0040,0100'][1]['0040,0001'] = nil\
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279 return query\
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280 end");
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281 self.assertEqual(1, len(RunQuery('Sequences/Queries/orig.7814.dump', []))) # query is targeting STATION_AET but, since we have removed this field, we should get 2 queries
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282
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283 def test_encodings(self):
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284 # Check out ../../Database/Worklists/Encodings/database.dump
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285 TEST = u'Test-éüäöòДΘĝדصķћ๛ﾈİ'
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286 ENCODINGS = {
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287 'Arabic' : [ 'ISO_IR 127' ],
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288 'Ascii' : [ 'ISO_IR 6' ], # More accurately, ISO 646
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289 'Cyrillic' : [ 'ISO_IR 144' ],
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290 'Greek' : [ 'ISO_IR 126' ],
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291 'Hebrew' : [ 'ISO_IR 138' ],
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292 'Japanese' : [ 'ISO_IR 13', 'shift-jis' ],
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293 'Latin1' : [ 'ISO_IR 100' ],
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294 'Latin2' : [ 'ISO_IR 101' ],
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295 'Latin3' : [ 'ISO_IR 109' ],
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296 'Latin4' : [ 'ISO_IR 110' ],
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297 'Latin5' : [ 'ISO_IR 148' ],
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298 'Thai' : [ 'ISO_IR 166', 'tis-620' ],
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299 'Utf8' : [ 'ISO_IR 192' ],
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300 }
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301
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302 AddToDatabase('Encodings/database.dump')
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303
609
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304 for (name, encoding) in ENCODINGS.items():
94
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305 self.assertEqual(name, DoPut(ORTHANC, '/tools/default-encoding', name))
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306 result = RunQuery('Encodings/query.dump', [])
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307
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308 self.assertEqual(1, len(result))
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309 self.assertEqual(2, len(result[0]))
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310 tags = ParseTopLevelTags(result[0])
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311
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312 if len(encoding) == 1:
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313 encoded = TEST.encode(name, 'ignore')
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314 else:
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315 encoded = TEST.encode(encoding[1], 'ignore')
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316
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317 self.assertEqual(encoding[0], tags['0008,0005'].decode('ascii'))
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318 self.assertEqual(encoded, tags['0010,0010'])
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319
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320
109
5b6812f8cc38 worklists: test_bitbucket_issue_49
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321 def test_bitbucket_issue_49(self):
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322 def Check(pythonEncoding, orthancEncoding, expectedEncoding, expectedContent):
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323 DoPut(ORTHANC, '/tools/default-encoding', orthancEncoding)
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324 result = RunQuery('Encodings/issue49-latin1.query', [])
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325 self.assertEqual(1, len(result))
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326 self.assertEqual(2, len(result[0]))
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327 tags = ParseTopLevelTags(result[0])
638
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328 self.assertEqual(expectedEncoding, tags['0008,0005'].decode('ascii'))
639
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329 if sys.version_info >= (3, 0):
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330 self.assertEqual(expectedContent, tags['0010,0010'].decode(pythonEncoding))
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331 else:
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332 self.assertEqual(expectedContent.decode('utf-8'), tags['0010,0010'].decode(pythonEncoding))
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333
109
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334 AddToDatabase('Encodings/issue49-latin1.wl')
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335 Check('ascii', 'Ascii', 'ISO_IR 6', 'VANILL^LAURA^^^Mme')
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336 Check('utf-8', 'Utf8', 'ISO_IR 192', 'VANILLÉ^LAURA^^^Mme')
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337 Check('latin-1', 'Latin1', 'ISO_IR 100', 'VANILLÉ^LAURA^^^Mme')
422
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338
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339
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340 def test_format(self):
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341 DoPut(ORTHANC, '/tools/default-encoding', 'Latin1')
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342 AddToDatabase('Dcmtk/Database/wklist1.dump')
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343
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344 # Only behavior of Orthanc <= 1.9.4
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345 a = DoPost(ORTHANC, '/modalities/self/find-worklist', {
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346 'PatientID' : ''
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347 })
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348 self.assertEqual(1, len(a))
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349 self.assertEqual(2, len(a[0]))
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350 self.assertEqual('AV35674', a[0]['PatientID'])
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351 self.assertEqual('ISO_IR 100', a[0]['SpecificCharacterSet'])
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352
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353 a = DoPost(ORTHANC, '/modalities/self/find-worklist', {
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354 'Query' : {
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355 'PatientID' : ''
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356 }
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357 })
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358 self.assertEqual(1, len(a))
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359 self.assertEqual(2, len(a[0]))
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360 self.assertEqual('AV35674', a[0]['PatientID'])
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361 self.assertEqual('ISO_IR 100', a[0]['SpecificCharacterSet'])
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362
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diff changeset
363 a = DoPost(ORTHANC, '/modalities/self/find-worklist', {
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364 'Query' : {
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365 'PatientID' : ''
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366 },
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367 'Short' : True
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368 })
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369 self.assertEqual(1, len(a))
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370 self.assertEqual(2, len(a[0]))
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371 self.assertEqual('AV35674', a[0]['0010,0020'])
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diff changeset
372 self.assertEqual('ISO_IR 100', a[0]['0008,0005'])
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diff changeset
373
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diff changeset
374 a = DoPost(ORTHANC, '/modalities/self/find-worklist', {
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375 'Query' : {
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376 'PatientID' : ''
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377 },
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378 'Full' : True
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379 })
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380 self.assertEqual(1, len(a))
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381 self.assertEqual(2, len(a[0]))
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382 self.assertEqual('AV35674', a[0]['0010,0020']['Value'])
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diff changeset
383 self.assertEqual('PatientID', a[0]['0010,0020']['Name'])
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diff changeset
384 self.assertEqual('ISO_IR 100', a[0]['0008,0005']['Value'])
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diff changeset
385 self.assertEqual('SpecificCharacterSet', a[0]['0008,0005']['Name'])
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diff changeset
386
109
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diff changeset
387
90
afbac3eb28a5 integration tests of worklists
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388 try:
afbac3eb28a5 integration tests of worklists
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389 print('\nStarting the tests...')
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390 unittest.main(argv = [ sys.argv[0] ] + args.options)
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diff changeset
391
afbac3eb28a5 integration tests of worklists
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diff changeset
392 finally:
afbac3eb28a5 integration tests of worklists
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393 print('\nDone')