Mercurial > hg > orthanc-tests
annotate Plugins/DicomWeb/Run.py @ 399:dd519677974d
integration tests for issue #195
| author | Sebastien Jodogne <s.jodogne@gmail.com> |
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| date | Thu, 06 May 2021 16:53:08 +0200 |
| parents | 9528e2a03d3c |
| children | 2c142e070f19 |
| rev | line source |
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1 #!/usr/bin/python |
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2 # -*- coding: utf-8 -*- |
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3 |
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4 |
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5 # Orthanc - A Lightweight, RESTful DICOM Store |
| 73 | 6 # Copyright (C) 2012-2016 Sebastien Jodogne, Medical Physics |
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7 # Department, University Hospital of Liege, Belgium |
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8 # Copyright (C) 2017-2021 Osimis S.A., Belgium |
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9 # |
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10 # This program is free software: you can redistribute it and/or |
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11 # modify it under the terms of the GNU General Public License as |
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12 # published by the Free Software Foundation, either version 3 of the |
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13 # License, or (at your option) any later version. |
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14 # |
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15 # This program is distributed in the hope that it will be useful, but |
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16 # WITHOUT ANY WARRANTY; without even the implied warranty of |
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17 # MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU |
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18 # General Public License for more details. |
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19 # |
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20 # You should have received a copy of the GNU General Public License |
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21 # along with this program. If not, see <http://www.gnu.org/licenses/>. |
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22 |
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23 |
| 85 | 24 |
| 25 # You must add the following to the configuration file: | |
| 26 # | |
| 27 # "DicomWeb" : { | |
| 28 # "Servers" : { | |
| 29 # "sample" : [ "http://localhost:8042/dicom-web/", "alice", "orthanctest" ] | |
| 30 # } | |
| 31 # } | |
| 32 | |
| 33 | |
| 34 | |
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35 import copy |
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36 import os |
| 33 | 37 import pprint |
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38 import sys |
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39 import argparse |
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40 import unittest |
| 83 | 41 import re |
| 304 | 42 from PIL import ImageChops |
| 43 | |
| 33 | 44 from DicomWeb import * |
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45 |
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46 sys.path.append(os.path.join(os.path.dirname(__file__), '..', '..', 'Tests')) |
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47 from Toolbox import * |
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48 |
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49 |
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50 ## |
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51 ## Parse the command-line arguments |
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52 ## |
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53 |
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54 parser = argparse.ArgumentParser(description = 'Run the integration tests for the DICOMweb plugin.') |
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55 |
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56 parser.add_argument('--server', |
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57 default = 'localhost', |
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58 help = 'Address of the Orthanc server to test') |
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59 parser.add_argument('--rest', |
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60 type = int, |
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61 default = 8042, |
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62 help = 'Port to the REST API') |
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63 parser.add_argument('--username', |
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64 default = 'alice', |
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65 help = 'Username to the REST API') |
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66 parser.add_argument('--password', |
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67 default = 'orthanctest', |
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68 help = 'Password to the REST API') |
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69 parser.add_argument('--wado', |
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70 default = '/wado', |
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71 help = 'Path to the WADO API') |
| 33 | 72 parser.add_argument('--dicomweb', |
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73 default = '/dicom-web/', |
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74 help = 'Path to the DICOMweb API') |
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75 parser.add_argument('--force', help = 'Do not warn the user', |
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76 action = 'store_true') |
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77 parser.add_argument('options', metavar = 'N', nargs = '*', |
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78 help='Arguments to Python unittest') |
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79 |
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80 args = parser.parse_args() |
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81 |
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82 |
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83 ## |
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84 ## Configure the testing context |
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85 ## |
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86 |
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87 if not args.force: |
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88 print(""" |
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89 WARNING: This test will remove all the content of your |
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90 Orthanc instance running on %s! |
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91 |
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92 Are you sure ["yes" to go on]?""" % args.server) |
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93 |
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94 if sys.stdin.readline().strip() != 'yes': |
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95 print('Aborting...') |
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96 exit(0) |
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97 |
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98 |
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99 ORTHANC = DefineOrthanc(server = args.server, |
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100 username = args.username, |
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101 password = args.password, |
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102 restPort = args.rest) |
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103 |
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104 |
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105 ## |
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106 ## The tests |
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107 ## |
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108 |
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109 |
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110 def UploadAndGetWadoPath(dicom): |
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111 i = UploadInstance(ORTHANC, dicom) ['ID'] |
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112 study = DoGet(ORTHANC, '/instances/%s/tags?simplify' % i) ['StudyInstanceUID'] |
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113 series = DoGet(ORTHANC, '/instances/%s/tags?simplify' % i) ['SeriesInstanceUID'] |
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114 instance = DoGet(ORTHANC, '/instances/%s/tags?simplify' % i) ['SOPInstanceUID'] |
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115 return '/studies/%s/series/%s/instances/%s' % (study, series, instance) |
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116 |
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117 |
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118 |
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119 class Orthanc(unittest.TestCase): |
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120 def setUp(self): |
| 83 | 121 if (sys.version_info >= (3, 0)): |
| 122 # Remove annoying warnings about unclosed socket in Python 3 | |
| 123 import warnings | |
| 124 warnings.simplefilter("ignore", ResourceWarning) | |
| 125 | |
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126 #print("In test: ", self._testMethodName) |
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127 |
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128 DropOrthanc(ORTHANC) |
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129 |
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130 def test_wado_dicom(self): |
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131 UploadInstance(ORTHANC, 'Brainix/Flair/IM-0001-0001.dcm') |
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132 |
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133 SIZE = 169478 |
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134 INSTANCE = '1.3.46.670589.11.0.0.11.4.2.0.8743.5.5396.2006120114314079549' |
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135 SERIES = '1.3.46.670589.11.0.0.11.4.2.0.8743.5.5396.2006120114285654497' |
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136 STUDY = '2.16.840.1.113669.632.20.1211.10000357775' |
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137 |
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138 self.assertRaises(Exception, lambda: DoGet(ORTHANC, args.wado)) |
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139 self.assertRaises(Exception, lambda: DoGet(ORTHANC, args.wado + '?requestType=WADO')) |
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140 self.assertRaises(Exception, lambda: DoGet(ORTHANC, args.wado + '?objectUID=%s' % INSTANCE)) |
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141 |
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142 dicom = DoGet(ORTHANC, args.wado + '?contentType=application/dicom&requestType=WADO&objectUID=%s' % INSTANCE) |
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143 self.assertEqual(SIZE, len(dicom)) |
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144 |
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145 dicom = DoGet(ORTHANC, args.wado + '?contentType=application/dicom&requestType=WADO&objectUID=%s&seriesUID=%s' % (INSTANCE, SERIES)) |
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146 self.assertEqual(SIZE, len(dicom)) |
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147 |
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148 dicom = DoGet(ORTHANC, args.wado + '?contentType=application/dicom&requestType=WADO&objectUID=%s&seriesUID=%s&studyUID=%s' % (INSTANCE, SERIES, STUDY)) |
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149 self.assertEqual(SIZE, len(dicom)) |
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150 |
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151 dicom = DoGet(ORTHANC, args.wado + '?contentType=application/dicom&requestType=WADO&objectUID=%s&seriesUID=%s' % (INSTANCE, SERIES)) |
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152 self.assertEqual(SIZE, len(dicom)) |
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153 |
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154 dicom = DoGet(ORTHANC, args.wado + '?contentType=application/dicom&requestType=WADO&objectUID=%s&studyUID=%s' % (INSTANCE, STUDY)) |
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155 self.assertEqual(SIZE, len(dicom)) |
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156 |
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157 self.assertRaises(Exception, lambda: DoGet(ORTHANC, args.wado + '?requestType=WADO&objectUID=%s&seriesUID=nope' % INSTANCE)) |
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158 self.assertRaises(Exception, lambda: DoGet(ORTHANC, args.wado + '?requestType=WADO&objectUID=%s&studyUID=nope' % INSTANCE)) |
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159 self.assertRaises(Exception, lambda: DoGet(ORTHANC, args.wado + '?requestType=WADO&objectUID=%s&seriesUID=nope&studyUID=nope' % INSTANCE)) |
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160 |
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161 def test_wado_image(self): |
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162 UploadInstance(ORTHANC, 'Phenix/IM-0001-0001.dcm') |
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163 INSTANCE = '1.2.840.113704.7.1.1.6632.1127829031.2' |
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164 |
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165 im = GetImage(ORTHANC, args.wado + '?requestType=WADO&objectUID=%s' % INSTANCE) |
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166 self.assertEqual('JPEG', im.format) |
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167 self.assertEqual('L', im.mode) |
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168 self.assertEqual(512, im.size[0]) |
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169 self.assertEqual(358, im.size[1]) |
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170 |
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171 im = GetImage(ORTHANC, args.wado + '?contentType=image/jpg&requestType=WADO&objectUID=%s' % INSTANCE) |
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172 self.assertEqual('JPEG', im.format) |
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173 |
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174 im = GetImage(ORTHANC, args.wado + '?contentType=image/png&requestType=WADO&objectUID=%s' % INSTANCE) |
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175 self.assertEqual('PNG', im.format) |
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176 self.assertEqual('L', im.mode) |
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177 self.assertEqual(512, im.size[0]) |
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178 self.assertEqual(358, im.size[1]) |
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179 |
| 33 | 180 def test_stow(self): |
| 181 self.assertEqual(0, len(DoGet(ORTHANC, '/instances'))) | |
| 182 SendStow(ORTHANC, args.dicomweb + '/studies', GetDatabasePath('Phenix/IM-0001-0001.dcm')) | |
| 183 self.assertEqual(1, len(DoGet(ORTHANC, '/instances'))) | |
| 184 a = SendStow(ORTHANC, args.dicomweb + '/studies', GetDatabasePath('Phenix/IM-0001-0001.dcm')) | |
| 185 self.assertEqual(1, len(DoGet(ORTHANC, '/instances'))) | |
| 186 | |
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187 self.assertEqual(4, len(a)) |
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188 |
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189 # Specific character set |
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190 self.assertTrue('00080005' in a) |
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191 self.assertEqual('CS', a['00080005']['vr']) |
| 33 | 192 |
| 193 self.assertTrue(a['00081190']['Value'][0].endswith('studies/2.16.840.1.113669.632.20.1211.10000098591')) | |
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194 self.assertEqual('UR', a['00081190']['vr']) |
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195 |
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196 self.assertFalse('Value' in a['00081198']) # No error => empty sequence |
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197 self.assertEqual('SQ', a['00081198']['vr']) |
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198 |
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199 self.assertEqual(1, len(a['00081199']['Value'])) # 1 success |
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200 self.assertEqual('SQ', a['00081199']['vr']) |
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201 |
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202 b = a['00081199']['Value'][0] |
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203 |
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204 # Referenced SOP class UID |
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205 self.assertEqual('UI', b['00081150']['vr']) |
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206 self.assertEqual(1, len(b['00081150']['Value'])) |
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207 self.assertEqual('1.2.840.10008.5.1.4.1.1.2', b['00081150']['Value'][0]) |
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208 |
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209 # Referenced SOP instance UID |
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210 self.assertEqual('UI', b['00081155']['vr']) |
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211 self.assertEqual(1, len(b['00081155']['Value'])) |
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212 self.assertEqual('1.2.840.113704.7.1.1.6632.1127829031.2', b['00081155']['Value'][0]) |
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213 |
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214 # Retrieve URL |
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215 self.assertEqual('UR', b['00081190']['vr']) |
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216 self.assertEqual(1, len(b['00081190']['Value'])) |
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217 self.assertTrue(b['00081190']['Value'][0]. |
| 33 | 218 endswith('series/1.2.840.113704.1.111.5692.1127828999.2/instances/1.2.840.113704.7.1.1.6632.1127829031.2')) |
| 219 | |
| 83 | 220 # Remove the "http://localhost:8042" prefix |
| 221 url = a['00081190']['Value'][0] | |
| 222 url = re.sub(r'(http|https)://[^/]+(/.*)', r'\2', url) | |
| 223 | |
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224 # Get the content-length of all the multiparts of this WADO-RS |
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225 # request (prevent transcoding by setting transfer-syntax to |
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226 # "*", necessary since release 1.5 of the DICOMweb plugin) |
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227 b = DoGet(ORTHANC, url, headers = { |
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228 'Accept' : 'multipart/related;type=application/dicom;transfer-syntax=*' |
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229 }).decode('utf-8', 'ignore') |
| 83 | 230 parts = re.findall(r'^Content-Length:\s*(\d+)\s*', b, re.IGNORECASE | re.MULTILINE) |
| 231 self.assertEqual(1, len(parts)) | |
| 232 self.assertEqual(os.path.getsize(GetDatabasePath('Phenix/IM-0001-0001.dcm')), int(parts[0])) | |
| 33 | 233 |
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234 |
| 84 | 235 def test_server_get(self): |
| 277 | 236 try: |
| 237 DoDelete(ORTHANC, '/dicom-web/servers/google') # If "AllWindowsStart.sh" is used | |
| 238 except: | |
| 239 pass | |
| 240 | |
|
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241 try: |
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242 DoDelete(ORTHANC, '/dicom-web/servers/hello') # If "test_add_server" fails |
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243 except: |
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244 pass |
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245 |
| 84 | 246 UploadInstance(ORTHANC, 'Knee/T1/IM-0001-0001.dcm') |
| 247 | |
| 248 self.assertEqual(1, len(DoGet(ORTHANC, '/dicom-web/servers'))) | |
| 249 self.assertTrue('sample' in DoGet(ORTHANC, '/dicom-web/servers')) | |
| 250 | |
| 129 | 251 serversReadback = DoGet(ORTHANC, '/dicom-web/servers?expand') |
| 252 self.assertEqual('http://localhost:8042/dicom-web/', serversReadback['sample']['Url']) | |
| 253 self.assertEqual('alice', serversReadback['sample']['Username']) | |
| 254 | |
| 84 | 255 sample = DoGet(ORTHANC, '/dicom-web/servers/sample') |
| 244 | 256 self.assertEqual(5, len(sample)) |
| 84 | 257 self.assertTrue('stow' in sample) |
| 258 self.assertTrue('retrieve' in sample) | |
| 259 self.assertTrue('get' in sample) | |
| 244 | 260 self.assertTrue('wado' in sample) # New in 0.7 |
| 261 self.assertTrue('qido' in sample) # New in 0.7 | |
| 84 | 262 |
| 263 # application/dicom+xml | |
|
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264 self.assertEqual(2, len(re.findall('^--', DoGet(ORTHANC, '/dicom-web/studies', |
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265 headers = { 'Accept' : 'application/dicom+xml' }), |
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266 re.MULTILINE))) |
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267 self.assertEqual(2, len(re.findall('^--', DoPost |
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268 (ORTHANC, '/dicom-web/servers/sample/get', |
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269 { 'Uri' : '/studies', |
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270 'HttpHeaders' : { 'Accept' : 'application/dicom+xml' } |
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271 }), re.MULTILINE))) |
| 84 | 272 |
| 273 # application/dicom+json | |
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274 self.assertEqual(1, len(DoGet(ORTHANC, '/dicom-web/studies', |
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275 headers = { 'Accept' : 'application/dicom+json' }))) |
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276 self.assertEqual(1, len(DoPost(ORTHANC, '/dicom-web/servers/sample/get', |
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277 { 'Uri' : '/studies', |
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278 'HttpHeaders' : { 'Accept' : 'application/dicom+json' }}))) |
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279 |
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280 # application/json |
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281 self.assertEqual(1, len(DoGet(ORTHANC, '/dicom-web/studies', |
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282 headers = { 'Accept' : 'application/json' }))) |
| 84 | 283 self.assertEqual(1, len(DoPost(ORTHANC, '/dicom-web/servers/sample/get', |
| 284 { 'Uri' : '/studies', | |
| 285 'HttpHeaders' : { 'Accept' : 'application/json' }}))) | |
| 286 | |
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287 # application/dicom+json is the default as of OrthancDicomWeb-0.5 |
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288 self.assertEqual(1, len(DoGet(ORTHANC, '/dicom-web/studies'))) |
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289 self.assertEqual(1, len(DoPost(ORTHANC, '/dicom-web/servers/sample/get', |
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290 { 'Uri' : '/studies' }))) |
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291 |
| 84 | 292 |
| 293 def test_server_stow(self): | |
| 294 UploadInstance(ORTHANC, 'Knee/T1/IM-0001-0001.dcm') | |
| 295 | |
| 296 self.assertRaises(Exception, lambda: | |
| 297 DoPost(ORTHANC, '/dicom-web/servers/sample/stow', | |
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298 { 'Resources' : [ 'nope' ], |
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299 'Synchronous' : True })) # inexisting resource |
| 84 | 300 |
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301 l = 2 # For >= 0.7 |
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302 #l = 0 # For <= 0.6 |
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303 |
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304 self.assertEqual(l, len(DoPost(ORTHANC, '/dicom-web/servers/sample/stow', |
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305 { 'Resources' : [ '0a9b3153-2512774b-2d9580de-1fc3dcf6-3bd83918' ], |
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306 'Synchronous' : True }))) # study |
| 84 | 307 |
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308 self.assertEqual(l, len(DoPost(ORTHANC, '/dicom-web/servers/sample/stow', |
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309 { 'Resources' : [ '6de73705-c4e65c1b-9d9ea1b5-cabcd8e7-f15e4285' ], |
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310 'Synchronous' : True }))) # series |
| 84 | 311 |
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312 self.assertEqual(l, len(DoPost(ORTHANC, '/dicom-web/servers/sample/stow', |
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313 { 'Resources' : [ 'c8df6478-d7794217-0f11c293-a41237c9-31d98357' ], |
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314 'Synchronous' : True }))) # instance |
| 84 | 315 |
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316 self.assertEqual(l, len(DoPost(ORTHANC, '/dicom-web/servers/sample/stow', |
| 84 | 317 { 'Resources' : [ |
| 318 'ca29faea-b6a0e17f-067743a1-8b778011-a48b2a17', | |
| 319 '0a9b3153-2512774b-2d9580de-1fc3dcf6-3bd83918', | |
| 320 '6de73705-c4e65c1b-9d9ea1b5-cabcd8e7-f15e4285', | |
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321 'c8df6478-d7794217-0f11c293-a41237c9-31d98357' ], |
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322 'Synchronous' : True }))) # altogether |
| 84 | 323 |
| 324 | |
| 325 def test_server_retrieve(self): | |
| 244 | 326 COUNT = 'ReceivedInstancesCount' |
| 327 #COUNT = 'Instances' # In version <= 0.6 | |
| 328 | |
| 84 | 329 UploadInstance(ORTHANC, 'Knee/T1/IM-0001-0001.dcm') |
| 330 UploadInstance(ORTHANC, 'Knee/T1/IM-0001-0002.dcm') | |
| 331 UploadInstance(ORTHANC, 'Knee/T2/IM-0001-0001.dcm') | |
| 332 | |
| 333 self.assertRaises(Exception, lambda: | |
| 334 DoPost(ORTHANC, '/dicom-web/servers/sample/retrieve', | |
| 335 { 'Resources' : [ { 'Study' : 'nope' } ]})) # inexisting resource | |
| 336 | |
| 337 t = DoPost(ORTHANC, '/dicom-web/servers/sample/retrieve', | |
| 338 { 'Resources' : [ { 'Study' : '2.16.840.1.113669.632.20.121711.10000160881' } ] }) | |
| 244 | 339 self.assertEqual(3, int(t[COUNT])) |
| 84 | 340 |
| 341 # Missing "Study" field | |
| 342 self.assertRaises(Exception, lambda: | |
| 343 DoPost(ORTHANC, '/dicom-web/servers/sample/retrieve', | |
| 344 { 'Resources' : [ { 'Series' : '1.3.46.670589.11.17521.5.0.3124.2008081908564160709' } ]})) | |
| 345 | |
| 346 t = DoPost(ORTHANC, '/dicom-web/servers/sample/retrieve', | |
| 347 { 'Resources' : [ { 'Study' : '2.16.840.1.113669.632.20.121711.10000160881', | |
| 348 'Series' : '1.3.46.670589.11.17521.5.0.3124.2008081908564160709' } ] }) | |
| 244 | 349 self.assertEqual(2, int(t[COUNT])) |
| 84 | 350 |
| 351 t = DoPost(ORTHANC, '/dicom-web/servers/sample/retrieve', | |
| 352 { 'Resources' : [ { 'Study' : '2.16.840.1.113669.632.20.121711.10000160881', | |
| 353 'Series' : '1.3.46.670589.11.17521.5.0.3124.2008081909090037350' } ] }) | |
| 244 | 354 self.assertEqual(1, int(t[COUNT])) |
| 84 | 355 |
| 356 t = DoPost(ORTHANC, '/dicom-web/servers/sample/retrieve', | |
| 357 { 'Resources' : [ { 'Study' : '2.16.840.1.113669.632.20.121711.10000160881', | |
| 358 'Series' : '1.3.46.670589.11.17521.5.0.3124.2008081909090037350' }, | |
| 359 { 'Study' : '2.16.840.1.113669.632.20.121711.10000160881', | |
| 360 'Series' : '1.3.46.670589.11.17521.5.0.3124.2008081908564160709' } ] }) | |
| 244 | 361 self.assertEqual(3, int(t[COUNT])) |
| 84 | 362 |
| 363 t = DoPost(ORTHANC, '/dicom-web/servers/sample/retrieve', | |
| 364 { 'Resources' : [ { 'Study' : '2.16.840.1.113669.632.20.121711.10000160881', | |
| 365 'Series' : '1.3.46.670589.11.17521.5.0.3124.2008081909090037350', | |
| 366 'Instance' : '1.3.46.670589.11.17521.5.0.3124.2008081909113806560' } ] }) | |
| 244 | 367 self.assertEqual(1, int(t[COUNT])) |
| 84 | 368 |
| 369 | |
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370 def test_bitbucket_issue_53(self): |
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371 # DICOMWeb plugin support for "limit" and "offset" parameters in QIDO-RS |
| 319 | 372 # https://bugs.orthanc-server.com/show_bug.cgi?id=53 |
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373 |
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374 UploadInstance(ORTHANC, 'Brainix/Flair/IM-0001-0001.dcm') |
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375 UploadInstance(ORTHANC, 'Knee/T1/IM-0001-0001.dcm') |
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376 |
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377 brainix = '2.16.840.1.113669.632.20.1211.10000357775' |
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378 knee = '2.16.840.1.113669.632.20.121711.10000160881' |
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379 |
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380 a = DoGet(ORTHANC, '/dicom-web/studies', |
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381 headers = { 'accept' : 'application/json' }) |
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382 self.assertEqual(2, len(a)) |
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383 |
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384 b = [] |
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385 a = DoGet(ORTHANC, '/dicom-web/studies?limit=1', |
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386 headers = { 'accept' : 'application/json' }) |
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387 self.assertEqual(1, len(a)) |
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388 b.append(a[0]['0020000D']['Value'][0]) |
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389 |
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390 a = DoGet(ORTHANC, '/dicom-web/studies?limit=1&offset=1', |
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391 headers = { 'accept' : 'application/json' }) |
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392 self.assertEqual(1, len(a)) |
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393 b.append(a[0]['0020000D']['Value'][0]) |
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394 |
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395 self.assertTrue(brainix in b) |
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396 self.assertTrue(knee in b) |
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397 |
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398 |
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399 def test_bitbucket_issue_111(self): |
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400 # Wrong serialization of empty values |
| 319 | 401 # https://bugs.orthanc-server.com/show_bug.cgi?id=111 |
| 402 # https://bitbucket.org/sjodogne/orthanc-dicomweb/issues/3 | |
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403 |
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404 # According to the standard, section F.2.5 |
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405 # (http://dicom.nema.org/medical/dicom/current/output/chtml/part18/sect_F.2.5.html), |
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406 # null values behave as follows: If an attribute is present in |
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407 # DICOM but empty (i.e., Value Length is 0), it shall be |
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408 # preserved in the DICOM JSON attribute object containing no |
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409 # "Value", "BulkDataURI" or "InlineBinary". |
| 319 | 410 # https://bugs.orthanc-server.com/show_bug.cgi?id=111 |
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411 |
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412 UploadInstance(ORTHANC, 'Issue111.dcm') |
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413 |
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414 # Test WADO-RS |
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415 a = DoGet(ORTHANC, '/dicom-web/studies/1.2.276.0.7230010.3.1.2.8323329.30185.1551199973.371589/metadata') |
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416 self.assertEqual(1, len(a)) |
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417 self.assertTrue('00080050' in a[0]) # AccessionNumber is null |
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418 self.assertEqual(1, len(a[0]['00080050'])) # 'vr' is the only field to be present |
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419 self.assertEqual('SH', a[0]['00080050']['vr']) |
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420 |
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421 # Test QIDO-RS |
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422 a = DoGet(ORTHANC, '/dicom-web/studies') |
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423 self.assertEqual(1, len(a)) |
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424 self.assertTrue('00080050' in a[0]) # AccessionNumber is null |
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425 self.assertEqual(1, len(a[0]['00080050'])) # 'vr' is the only field to be present |
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426 self.assertEqual('SH', a[0]['00080050']['vr']) |
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427 |
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428 |
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429 def test_wado_hierarchy(self): |
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430 def CheckJson(uri, headers = {}): |
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431 with open(GetDatabasePath('DummyCT.json'), 'r') as f: |
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432 expected = json.loads(f.read()) |
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433 actual = DoGet(ORTHANC, uri, headers) |
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434 self.assertEqual(1, len(actual)) |
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435 AssertAlmostEqualRecursive(self, expected, actual[0]) |
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436 |
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437 UploadInstance(ORTHANC, 'DummyCT.dcm') |
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438 study = '1.2.840.113619.2.176.2025.1499492.7391.1171285944.390' |
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439 series = '1.2.840.113619.2.176.2025.1499492.7391.1171285944.394' |
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440 instance = '1.2.840.113619.2.176.2025.1499492.7040.1171286242.109' |
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441 |
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442 URI = '/dicom-web/studies/%s/series/%s/instances/%s/metadata' |
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443 self.assertRaises(Exception, lambda: DoGet(ORTHANC, URI % (study, series, instance), |
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444 headers = { 'accept' : 'application/nope' })) |
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445 |
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446 CheckJson(URI % (study, series, instance), headers = { 'accept' : 'application/dicom+json' }) |
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447 CheckJson('/dicom-web/studies/%s/series/%s/metadata' % (study, series)) |
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448 CheckJson('/dicom-web/studies/%s/metadata' % study) |
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449 |
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450 self.assertRaises(Exception, lambda: DoGet(ORTHANC, URI % ('nope', series, instance))) |
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451 self.assertRaises(Exception, lambda: DoGet(ORTHANC, URI % (study, 'nope', instance))) |
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452 self.assertRaises(Exception, lambda: DoGet(ORTHANC, URI % (study, series, 'nope'))) |
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453 self.assertRaises(Exception, lambda: DoGet(ORTHANC, '/dicom-web/studies/%s/series/%s/metadata' % ('nope', series))) |
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454 self.assertRaises(Exception, lambda: DoGet(ORTHANC, '/dicom-web/studies/%s/series/%s/metadata' % (study, 'nope'))) |
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455 self.assertRaises(Exception, lambda: DoGet(ORTHANC, '/dicom-web/studies/%s/metadata' % 'nope')) |
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456 |
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457 |
| 228 | 458 def test_wado_pixel_data(self): |
| 459 orthanc = UploadInstance(ORTHANC, 'Issue29.dcm') ['ID'] | |
| 460 a = DoGet(ORTHANC, '/dicom-web/instances') | |
| 461 self.assertEqual(1, len(a)) | |
| 462 url = a[0]['00081190']['Value'][0] | |
| 463 | |
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464 prefix = 'http://%s:%s' % (args.server, args.rest) |
| 228 | 465 self.assertTrue(url.startswith(prefix)) |
| 466 | |
| 467 b = DoGet(ORTHANC, url[len(prefix):] + '/metadata') | |
| 468 self.assertEqual('OB', b[0]['7FE00010']['vr']) | |
| 469 self.assertEqual(2, len(b[0]['7FE00010'])) | |
| 470 self.assertTrue('BulkDataURI' in b[0]['7FE00010']) | |
| 471 | |
| 472 url = b[0]['7FE00010']['BulkDataURI'] | |
| 473 self.assertTrue(url.startswith(prefix)) | |
| 474 | |
| 475 p = DoGetMultipart(ORTHANC, url[len(prefix):]) | |
| 476 | |
| 477 self.assertEqual(2, len(p)) # There are 2 fragments in this image | |
| 478 self.assertEqual(4, len(p[0])) | |
| 479 self.assertEqual(114486, len(p[1])) | |
| 480 | |
| 481 | |
| 482 def test_wado_hierarchy_bulk(self): | |
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483 def CheckBulk(value, bulk): |
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484 self.assertEqual(2, len(value)) |
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485 self.assertTrue('BulkDataURI' in value) |
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486 self.assertTrue('vr' in value) |
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487 self.assertEqual(value['BulkDataURI'], bulk) |
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488 |
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489 orthanc = UploadInstance(ORTHANC, 'PrivateTags.dcm') ['ID'] |
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490 study = '1.2.840.113619.2.115.147416.1094281639.0.29' |
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491 series = '1.2.840.113619.2.115.147416.1094281639.0.30' |
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492 sop = '1.2.840.113619.2.115.147416.1094281639.0.38' |
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493 |
| 228 | 494 # WARNING: This test will fail on Orthanc <= 1.5.5, because |
| 319 | 495 # the following fix was not included yet: |
| 496 # https://hg.orthanc-server.com/orthanc/rev/b88937ef597b | |
| 228 | 497 |
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498 a = DoGet(ORTHANC, '/dicom-web/studies/%s/metadata' % study) |
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499 self.assertEqual(1, len(a)) |
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500 |
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501 BASE_URI = '/dicom-web/studies/%s/series/%s/instances/%s/bulk' % (study, series, sop) |
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502 BASE_URL = 'http://%s:%s%s' % (args.server, args.rest, BASE_URI) |
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503 |
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504 self.assertEqual(2, len(a[0]['60031010']['Value'])) |
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505 CheckBulk(a[0]['60031010']['Value'][0]['60031011'], '%s/60031010/1/60031011' % BASE_URL) |
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506 CheckBulk(a[0]['60031010']['Value'][1]['60031011'], '%s/60031010/2/60031011' % BASE_URL) |
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507 CheckBulk(a[0]['7FE00010'], '%s/7fe00010' % BASE_URL) |
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508 |
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509 b = DoGetRaw(ORTHANC, '/instances/%s/content/6003-1010/0/6003-1011' % orthanc) [1] |
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510 c = DoGetMultipart(ORTHANC, '%s/60031010/1/60031011' % BASE_URI) |
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511 |
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512 self.assertEqual(12288, len(b)) |
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513 self.assertEqual(1, len(c)) |
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514 self.assertEqual(b, c[0]) |
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515 |
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516 |
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517 def test_bitbucket_issue_112(self): |
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518 # Wrong serialization of number values |
| 319 | 519 # https://bugs.orthanc-server.com/show_bug.cgi?id=112 |
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520 # https://bitbucket.org/sjodogne/orthanc-dicomweb/issues/4/ |
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521 |
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522 UploadInstance(ORTHANC, 'DummyCT.dcm') |
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523 study = '1.2.840.113619.2.176.2025.1499492.7391.1171285944.390' |
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524 |
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525 # This is the WADO-RS testing |
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526 a = DoGet(ORTHANC, '/dicom-web/studies/%s/metadata' % study) |
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527 self.assertEqual(1, len(a)) |
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528 self.assertEqual('IS', a[0]['00180091']['vr']) # EchoTrainLength |
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529 |
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530 if (sys.version_info >= (3, 0)): |
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531 types = (int) |
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532 else: |
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533 types = (int, long) |
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534 |
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535 b = a[0]['00180091']['Value'][0] |
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536 self.assertTrue(isinstance(b, types)) |
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537 self.assertEqual(10, b) |
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538 |
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539 # This is the QIDO-RS testing |
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540 a = DoGet(ORTHANC, '/dicom-web/studies') |
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541 self.assertEqual(1, len(a)) |
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542 self.assertEqual('IS', a[0]['00201208']['vr']) # Number of Study Related Instances |
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543 |
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544 b = a[0]['00201208']['Value'][0] |
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545 self.assertTrue(isinstance(b, types)) |
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546 self.assertEqual(1, b) |
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547 |
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548 |
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549 def test_bitbucket_issue_113(self): |
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550 # Wrong serialization of PN VR |
| 319 | 551 # https://bugs.orthanc-server.com/show_bug.cgi?id=113 |
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552 # https://bitbucket.org/sjodogne/orthanc-dicomweb/issues/2/ |
| 314 | 553 |
| 554 # Make sure UTF-8 encoding is used | |
| 555 self.assertEqual('Utf8', DoPut(ORTHANC, '/tools/default-encoding', 'Utf8')) | |
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556 |
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557 UploadInstance(ORTHANC, 'Encodings/DavidClunie/SCSX1') |
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558 study = '1.3.6.1.4.1.5962.1.2.0.1175775771.5711.0' |
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559 |
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560 # This is the WADO-RS testing |
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561 a = DoGet(ORTHANC, '/dicom-web/studies/%s/metadata' % study) |
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562 self.assertEqual(1, len(a)) |
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563 |
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564 pn = a[0]['00100010'] # Patient name |
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565 self.assertEqual('PN', pn['vr']) |
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566 self.assertEqual(1, len(pn['Value'])) |
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567 self.assertEqual('Wang^XiaoDong', pn['Value'][0]['Alphabetic']) |
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568 self.assertEqual(u'王^小東', pn['Value'][0]['Ideographic']) |
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569 |
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570 # This is the QIDO-RS testing |
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571 a = DoGet(ORTHANC, '/dicom-web/studies') |
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572 self.assertEqual(1, len(a)) |
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573 |
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574 pn = a[0]['00100010'] # Patient name |
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575 self.assertEqual('PN', pn['vr']) |
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576 self.assertEqual(1, len(pn['Value'])) |
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577 self.assertEqual('Wang^XiaoDong', pn['Value'][0]['Alphabetic']) |
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578 self.assertEqual(u'王^小東', pn['Value'][0]['Ideographic']) |
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579 |
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580 |
| 225 | 581 def test_bitbucket_issue_96(self): |
| 582 # WADO-RS RetrieveFrames rejects valid accept headers | |
| 319 | 583 # https://bugs.orthanc-server.com/show_bug.cgi?id=96 |
| 225 | 584 # https://bitbucket.org/sjodogne/orthanc-dicomweb/issues/5/ |
| 585 | |
| 228 | 586 UploadInstance(ORTHANC, 'Brainix/Epi/IM-0001-0001.dcm') |
| 225 | 587 |
| 588 a = DoGet(ORTHANC, '/dicom-web/instances') | |
| 589 self.assertEqual(1, len(a)) | |
| 228 | 590 self.assertEqual(256, a[0]['00280010']['Value'][0]) # Rows |
| 591 self.assertEqual(256, a[0]['00280011']['Value'][0]) # Columns | |
| 592 self.assertEqual(16, a[0]['00280100']['Value'][0]) # Bits allocated | |
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593 |
| 225 | 594 url = a[0]['00081190']['Value'][0] |
| 595 | |
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596 prefix = 'http://%s:%s' % (args.server, args.rest) |
| 225 | 597 self.assertTrue(url.startswith(prefix)) |
| 598 uri = url[len(prefix):] | |
| 599 | |
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600 self.assertRaises(Exception, lambda: DoGetMultipart(ORTHANC, '%s/frames/%d' % (uri, 0))) |
| 228 | 601 self.assertRaises(Exception, lambda: DoGetMultipart(ORTHANC, '%s/frames/%d' % (uri, 2))) |
| 602 | |
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603 b = DoGetMultipart(ORTHANC, '%s/frames/%d' % (uri, 1)) |
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604 self.assertEqual(1, len(b)) |
| 228 | 605 self.assertEqual(256 * 256 * 2, len(b[0])) |
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606 self.assertEqual('ce394eb4d4de4eeef348436108101f3b', ComputeMD5(b[0])) |
| 225 | 607 |
| 228 | 608 c = DoGetMultipart(ORTHANC, '%s/frames/%d' % (uri, 1), |
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609 headers = { 'Accept' : 'multipart/related; type=application/octet-stream' }) |
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610 self.assertEqual(1, len(c)) |
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611 self.assertEqual(b[0], c[0]) |
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612 self.assertEqual('ce394eb4d4de4eeef348436108101f3b', ComputeMD5(c[0])) |
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613 |
| 228 | 614 c = DoGetMultipart(ORTHANC, '%s/frames/%d' % (uri, 1), |
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615 headers = { 'Accept' : 'multipart/related; type="application/octet-stream"' }) |
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616 self.assertEqual(1, len(c)) |
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617 self.assertEqual(b[0], c[0]) |
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618 self.assertEqual('ce394eb4d4de4eeef348436108101f3b', ComputeMD5(c[0])) |
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619 |
| 228 | 620 self.assertRaises(Exception, lambda: DoGetMultipart(ORTHANC, '%s/frames/%d' % (uri, 1), |
| 621 headers = { 'Accept' : 'multipart/related; type="nope"' })) | |
| 622 | |
| 623 self.assertRaises(Exception, lambda: DoGetMultipart(ORTHANC, '%s/frames/%d' % (uri, 1), | |
| 624 headers = { 'Accept' : 'multipart/related; type=nope' })) | |
| 625 | |
| 626 self.assertRaises(Exception, lambda: DoGetMultipart(ORTHANC, '%s/frames/%d' % (uri, 1), | |
| 627 headers = { 'Accept' : 'nope' })) | |
| 628 | |
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629 |
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630 def test_qido_fields(self): |
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631 UploadInstance(ORTHANC, 'DummyCT.dcm') |
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632 |
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633 a = DoGet(ORTHANC, '/dicom-web/studies') |
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634 self.assertEqual(1, len(a)) |
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635 self.assertFalse('00280010' in a[0]) # Rows |
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636 |
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637 a = DoGet(ORTHANC, '/dicom-web/studies?includefield=Rows') |
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638 self.assertEqual(1, len(a)) |
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639 self.assertTrue('00280010' in a[0]) |
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640 self.assertEqual(512, a[0]['00280010']['Value'][0]) |
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641 |
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642 a = DoGet(ORTHANC, '/dicom-web/studies?Rows=128') |
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643 self.assertEqual(0, len(a)) |
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644 |
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645 a = DoGet(ORTHANC, '/dicom-web/studies?Rows=512') |
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646 self.assertEqual(1, len(a)) |
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647 self.assertTrue('00280010' in a[0]) |
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648 self.assertEqual(512, a[0]['00280010']['Value'][0]) |
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649 |
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650 |
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651 def test_stow_errors(self): |
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652 def CheckSequences(a): |
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653 self.assertEqual(3, len(a)) |
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654 self.assertTrue('00080005' in a) |
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655 self.assertTrue('00081198' in a) |
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656 self.assertTrue('00081199' in a) |
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657 self.assertEqual('CS', a['00080005']['vr']) |
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658 self.assertEqual('SQ', a['00081198']['vr']) |
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659 self.assertEqual('SQ', a['00081199']['vr']) |
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660 |
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661 # Pushing an instance to a study that is not its parent |
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662 (status, a) = SendStowRaw(ORTHANC, args.dicomweb + '/studies/nope', GetDatabasePath('Phenix/IM-0001-0001.dcm')) |
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663 self.assertEqual(409, status) |
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664 CheckSequences(a) |
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665 |
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666 self.assertFalse('Value' in a['00081199']) # No success instance |
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667 |
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668 self.assertEqual(1, len(a['00081198']['Value'])) # One failed instance |
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669 self.assertEqual('1.2.840.10008.5.1.4.1.1.2', |
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670 a['00081198']['Value'][0]['00081150']['Value'][0]) |
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671 self.assertEqual('1.2.840.113704.7.1.1.6632.1127829031.2', |
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672 a['00081198']['Value'][0]['00081155']['Value'][0]) |
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673 self.assertEqual(0x0110, # Processing failure |
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674 a['00081198']['Value'][0]['00081197']['Value'][0]) |
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675 |
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676 # Pushing an instance with missing tags |
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677 (status, a) = SendStowRaw(ORTHANC, args.dicomweb + '/studies', GetDatabasePath('Issue111.dcm')) |
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678 self.assertEqual(400, status) |
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679 CheckSequences(a) |
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680 |
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681 self.assertFalse('Value' in a['00081198']) # No failed instance, as tags are missing |
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682 self.assertFalse('Value' in a['00081199']) # No success instance |
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683 |
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684 # Pushing a file that is not in the DICOM format |
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685 (status, a) = SendStowRaw(ORTHANC, args.dicomweb + '/studies', GetDatabasePath('Issue111.dump')) |
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686 self.assertEqual(400, status) |
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687 CheckSequences(a) |
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688 |
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689 self.assertFalse('Value' in a['00081198']) # No failed instance, as non-DICOM |
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690 self.assertFalse('Value' in a['00081199']) # No success instance |
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691 |
|
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692 # Pushing a DICOM instance with only SOP class and instance UID |
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693 (status, a) = SendStowRaw(ORTHANC, args.dicomweb + '/studies', GetDatabasePath('Issue196.dcm')) |
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694 self.assertEqual(400, status) |
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695 CheckSequences(a) |
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696 |
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697 self.assertFalse('Value' in a['00081199']) # No success instance |
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698 |
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699 self.assertEqual(1, len(a['00081198']['Value'])) # One failed instance |
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700 self.assertEqual('1.2.840.10008.5.1.4.1.1.4', |
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701 a['00081198']['Value'][0]['00081150']['Value'][0]) |
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702 self.assertEqual('1.2.840.113619.2.176.2025.1499492.7040.1171286242.109', |
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703 a['00081198']['Value'][0]['00081155']['Value'][0]) |
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704 self.assertEqual(0xC000, # Error: Cannot understand (cannot understand certain Data Elements) |
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705 a['00081198']['Value'][0]['00081197']['Value'][0]) |
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706 |
|
239
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707 |
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708 def test_allowed_methods(self): |
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709 self.assertEqual(0, len(DoGet(ORTHANC, '/dicom-web/studies'))) |
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710 |
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711 with self.assertRaises(Exception) as e: |
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712 DoPut(ORTHANC, '/dicom-web/studies') |
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713 |
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714 self.assertEqual(405, e.exception[0]) |
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715 self.assertEqual("GET,POST", e.exception[1]['allow']) |
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716 |
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717 with self.assertRaises(Exception) as e: |
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718 DoDelete(ORTHANC, '/dicom-web/studies') |
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719 |
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720 self.assertEqual(405, e.exception[0]) |
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721 self.assertEqual("GET,POST", e.exception[1]['allow']) |
|
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722 |
|
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723 |
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724 def test_add_server(self): |
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725 try: |
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726 DoDelete(ORTHANC, '/dicom-web/servers/hello') |
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727 except: |
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728 pass |
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729 |
| 277 | 730 try: |
| 731 DoDelete(ORTHANC, '/dicom-web/servers/google') # If "AllWindowsStart.sh" is used | |
| 732 except: | |
| 733 pass | |
| 734 | |
|
241
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735 l = DoGet(ORTHANC, '/dicom-web/servers') |
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736 self.assertEqual(1, len(l)) |
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737 self.assertTrue('sample' in l) |
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738 |
|
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739 url = 'http://localhost:8042/dicom-web/' |
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740 DoPut(ORTHANC, '/dicom-web/servers/hello', { |
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741 'Url': url, |
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742 'HttpHeaders' : { |
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743 'Hello' : 'World' |
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744 }, |
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745 'Username' : 'bob', |
| 242 | 746 'Password' : 'password', |
| 747 'UserProperty' : 'Test', | |
|
249
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748 'HasDelete' : True, |
|
381
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749 'Timeout' : 66 # New in 1.6 |
|
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750 }) |
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751 |
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752 l = DoGet(ORTHANC, '/dicom-web/servers') |
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753 self.assertEqual(2, len(l)) |
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754 self.assertTrue('sample' in l) |
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755 self.assertTrue('hello' in l) |
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756 |
|
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757 o = DoGet(ORTHANC, '/dicom-web/servers/sample') |
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758 self.assertEqual(5, len(o)) |
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759 self.assertTrue('stow' in o) |
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760 self.assertTrue('retrieve' in o) |
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761 self.assertTrue('get' in o) |
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762 self.assertTrue('wado' in o) # New in 0.7 |
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763 self.assertTrue('qido' in o) # New in 0.7 |
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764 |
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765 o = DoGet(ORTHANC, '/dicom-web/servers/hello') |
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766 self.assertEqual(6, len(o)) |
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767 self.assertTrue('stow' in o) |
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768 self.assertTrue('retrieve' in o) |
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769 self.assertTrue('get' in o) |
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770 self.assertTrue('wado' in o) # New in 0.7 |
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771 self.assertTrue('qido' in o) # New in 0.7 |
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772 self.assertTrue('delete' in o) # New in 0.7 |
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773 |
|
241
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774 s = DoGet(ORTHANC, '/dicom-web/servers?expand') |
|
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775 self.assertEqual(8, len(s['hello'])) |
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776 self.assertEqual(url, s['hello']['Url']) |
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777 self.assertEqual('bob', s['hello']['Username']) |
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778 self.assertEqual(None, s['hello']['Password']) |
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779 self.assertFalse(s['hello']['Pkcs11']) |
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780 self.assertEqual(1, len(s['hello']['HttpHeaders'])) |
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781 self.assertTrue('Hello' in s['hello']['HttpHeaders']) |
| 242 | 782 self.assertEqual('Test', s['hello']['UserProperty']) |
|
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783 self.assertEqual('1', s['hello']['HasDelete']) |
|
388
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784 self.assertEqual(66, s['hello']['Timeout']) # New in 1.6 (interpreted as a string in <= 1.5) |
|
241
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785 |
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786 DoDelete(ORTHANC, '/dicom-web/servers/hello') |
|
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|
787 |
|
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788 |
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789 def test_bitbucket_issue_143(self): |
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790 # WADO-RS metadata request returns "500 Internal Server Error" |
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791 # instead of "404 Not Found" for missing instance |
| 319 | 792 # https://bugs.orthanc-server.com/show_bug.cgi?id=143 |
|
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793 UploadInstance(ORTHANC, 'Issue143.dcm') |
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794 |
|
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795 try: |
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796 DoGet(ORTHANC, '/dicom-web/studies/1.2.840.113619.2.55.3.671756986.106.1316467036.460/series/1.2.840.113619.2.55.3.671756986.106.1316467036.465/instances/0.0.0.0.0/metadata') |
|
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797 self.assertFail() |
|
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798 except Exception as e: |
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799 self.assertEqual(404, e[0]) |
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800 |
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801 DoGet(ORTHANC, '/dicom-web/studies/1.3.6.1.4.1.34261.90254037371867.41912.1553085024.2/series/1.3.6.1.4.1.34261.90254037371867.41912.1553085024.3/instances/1.2.276.0.7230010.3.1.4.253549293.36648.1555586123.754/metadata') |
|
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|
802 |
|
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|
803 try: |
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804 DoGet(ORTHANC, '/dicom-web/studies/0.0.0.0.0/series/1.3.6.1.4.1.34261.90254037371867.41912.1553085024.3/instances/1.2.276.0.7230010.3.1.4.253549293.36648.1555586123.754/metadata') |
|
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805 self.fail() |
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806 except Exception as e: |
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807 self.assertEqual(404, e[0]) |
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808 |
|
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|
809 try: |
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810 DoGet(ORTHANC, '/dicom-web/studies/1.3.6.1.4.1.34261.90254037371867.41912.1553085024.2/series/0.0.0.0.0/instances/1.2.276.0.7230010.3.1.4.253549293.36648.1555586123.754/metadata') |
|
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811 self.assertFail() |
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812 except Exception as e: |
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813 self.assertEqual(404, e[0]) |
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814 |
|
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|
815 try: |
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816 DoGet(ORTHANC, '/dicom-web/studies/0.0.0.0.0/series/0.0.0.0.0/instances/0.0.0.0.0/metadata') |
|
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817 self.assertFail() |
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818 except Exception as e: |
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819 self.assertEqual(404, e[0]) |
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820 |
|
248
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821 |
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822 def test_encodings_qido(self): |
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823 # The "DefaultEncoding" condifuration option is set to "UTF8" |
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824 # in the integration tests, so all the QIDO-RS requests must |
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825 # lead to a "ISO_IR 192" specific character set |
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826 def GetPatientName(dicom, onlyAlphabetic): |
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827 i = UploadInstance(ORTHANC, dicom) ['ID'] |
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828 j = DoGet(ORTHANC, '/instances/%s/tags?simplify' % i) ['StudyInstanceUID'] |
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829 qido = DoGet(ORTHANC, '/dicom-web/studies?0020000D=%s' % j) |
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830 self.assertEqual(1, len(qido)) |
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831 self.assertEqual('CS', qido[0]['00080005']['vr']) |
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832 self.assertEqual('ISO_IR 192', qido[0]['00080005']['Value'][0]) |
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833 if onlyAlphabetic: |
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834 self.assertEqual(1, len(qido[0]['00100010']['Value'][0])) |
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835 else: |
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836 self.assertEqual(3, len(qido[0]['00100010']['Value'][0])) |
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837 return qido[0]['00100010']['Value'][0] |
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838 |
| 314 | 839 # Make sure UTF-8 encoding is used |
| 840 self.assertEqual('Utf8', DoPut(ORTHANC, '/tools/default-encoding', 'Utf8')) | |
| 841 | |
|
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842 # Check out "test_issue_95_encodings" in "../../Tests/Tests.py" |
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843 |
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844 self.assertEqual(u'Buc^Jérôme', GetPatientName('Encodings/DavidClunie/SCSFREN', True) ['Alphabetic']) |
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845 self.assertEqual(u'Äneas^Rüdiger', GetPatientName('Encodings/DavidClunie/SCSGERM', True)['Alphabetic']) |
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846 self.assertEqual(u'Διονυσιος', GetPatientName('Encodings/DavidClunie/SCSGREEK', True)['Alphabetic']) |
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847 self.assertEqual(u'Люкceмбypг', GetPatientName('Encodings/DavidClunie/SCSRUSS', True)['Alphabetic']) |
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848 self.assertEqual(u'שרון^דבורה', GetPatientName('Encodings/DavidClunie/SCSHBRW', True)['Alphabetic']) |
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849 self.assertEqual(u'قباني^لنزار', GetPatientName('Encodings/DavidClunie/SCSARAB', True)['Alphabetic']) |
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850 |
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851 self.assertEqual(u'Hong^Gildong', GetPatientName('Encodings/DavidClunie/SCSI2', False)['Alphabetic']) |
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852 self.assertEqual(u'洪^吉洞', GetPatientName('Encodings/DavidClunie/SCSI2', False)['Ideographic']) |
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853 self.assertEqual(u'홍^길동', GetPatientName('Encodings/DavidClunie/SCSI2', False)['Phonetic']) |
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854 self.assertEqual(u'Wang^XiaoDong', GetPatientName('Encodings/DavidClunie/SCSX2', False)['Alphabetic']) |
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855 self.assertEqual(u'王^小东', GetPatientName('Encodings/DavidClunie/SCSX2', False)['Ideographic']) |
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856 self.assertEqual(u'', GetPatientName('Encodings/DavidClunie/SCSX2', False)['Phonetic']) |
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857 self.assertEqual(u'Wang^XiaoDong', GetPatientName('Encodings/DavidClunie/SCSX1', False)['Alphabetic']) |
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858 self.assertEqual(u'王^小東', GetPatientName('Encodings/DavidClunie/SCSX1', False)['Ideographic']) |
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859 self.assertEqual(u'', GetPatientName('Encodings/DavidClunie/SCSX1', False)['Phonetic']) |
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860 self.assertEqual(u'Yamada^Tarou', GetPatientName('Encodings/DavidClunie/SCSH31', False)['Alphabetic']) |
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861 self.assertEqual(u'山田^太郎', GetPatientName('Encodings/DavidClunie/SCSH31', False)['Ideographic']) |
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862 self.assertEqual(u'やまだ^たろう', GetPatientName('Encodings/DavidClunie/SCSH31', False)['Phonetic']) |
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863 self.assertEqual(u'ﾔﾏﾀﾞ^ﾀﾛｳ', GetPatientName('Encodings/DavidClunie/SCSH32', False)['Alphabetic']) |
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864 |
|
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865 # TODO - Not supported yet by the Orthanc core as of 1.5.7 |
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866 #self.assertEqual(u'山田^太郎', GetPatientName('Encodings/DavidClunie/SCSH32')['Ideographic']) |
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867 #self.assertEqual(u'やまだ^たろう', GetPatientName('Encodings/DavidClunie/SCSH32')['Phonetic']) |
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868 |
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|
869 |
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870 def test_encodings_wado_metadata(self): |
|
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871 # If querying the instance metadata, the "DefaultEncoding" |
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872 # configuration is not used, but the actual encoding |
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873 def GetEncoding(dicom, length): |
|
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874 qido = DoGet(ORTHANC, '/dicom-web/%s/metadata' % UploadAndGetWadoPath(dicom)) |
|
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875 self.assertEqual(1, len(qido)) |
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876 self.assertEqual(length, len(qido[0]['00080005']['Value'])) |
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877 self.assertEqual('CS', qido[0]['00080005']['vr']) |
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878 return qido[0]['00080005']['Value'] |
|
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879 |
|
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880 self.assertEqual('ISO_IR 100', GetEncoding('Encodings/DavidClunie/SCSFREN', 1)[0]) |
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881 self.assertEqual('ISO_IR 100', GetEncoding('Encodings/DavidClunie/SCSGERM', 1)[0]) |
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882 self.assertEqual('ISO_IR 126', GetEncoding('Encodings/DavidClunie/SCSGREEK', 1)[0]) |
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883 self.assertEqual('ISO_IR 144', GetEncoding('Encodings/DavidClunie/SCSRUSS', 1)[0]) |
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884 self.assertEqual('ISO_IR 138', GetEncoding('Encodings/DavidClunie/SCSHBRW', 1)[0]) |
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885 self.assertEqual('ISO_IR 127', GetEncoding('Encodings/DavidClunie/SCSARAB', 1)[0]) |
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886 self.assertEqual('ISO 2022 IR 149', GetEncoding('Encodings/DavidClunie/SCSI2', 1)[0]) |
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887 self.assertEqual('GB18030', GetEncoding('Encodings/DavidClunie/SCSX2', 1)[0]) |
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888 self.assertEqual('ISO_IR 192', GetEncoding('Encodings/DavidClunie/SCSX1', 1)[0]) |
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889 self.assertEqual('ISO 2022 IR 87', GetEncoding('Encodings/DavidClunie/SCSH31', 1)[0]) |
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|
890 self.assertEqual('ISO 2022 IR 13', GetEncoding('Encodings/DavidClunie/SCSH32', 2)[0]) |
|
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|
891 self.assertEqual('ISO 2022 IR 87', GetEncoding('Encodings/DavidClunie/SCSH32', 2)[1]) |
|
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|
892 |
|
249
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|
893 |
|
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|
894 def test_rendered(self): |
|
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|
895 def RenderFrame(path, i): |
|
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|
896 return DoPost(ORTHANC, '/dicom-web/servers/sample/get', { |
|
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897 'Uri' : '%s/frames/%d/rendered' % (path, i) |
|
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|
898 }) |
|
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|
899 |
|
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|
900 # This image has 76 frames |
|
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901 path = UploadAndGetWadoPath('Multiframe.dcm') |
|
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|
902 |
|
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903 self.assertRaises(Exception, lambda: RenderFrame(path, 0)) |
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|
904 |
|
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|
905 frame1 = RenderFrame(path, 1) |
|
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906 im = UncompressImage(frame1) |
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|
907 self.assertEqual("L", im.mode) |
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908 self.assertEqual(512, im.size[0]) |
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909 self.assertEqual(512, im.size[1]) |
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|
910 |
|
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|
911 im = UncompressImage(RenderFrame(path, 76)) |
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912 self.assertEqual("L", im.mode) |
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913 self.assertEqual(512, im.size[0]) |
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914 self.assertEqual(512, im.size[1]) |
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|
915 |
|
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|
916 self.assertRaises(Exception, lambda: RenderFrame(path, 77)) |
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|
917 |
|
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|
918 defaultFrame = DoPost(ORTHANC, '/dicom-web/servers/sample/get', { |
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919 'Uri' : '%s/rendered' % path |
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920 }) |
|
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|
921 |
|
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922 self.assertEqual(len(frame1), len(defaultFrame)) |
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923 self.assertEqual(frame1, defaultFrame) |
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|
924 |
|
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|
925 |
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926 # This image has 1 frame |
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927 path = UploadAndGetWadoPath('Phenix/IM-0001-0001.dcm') |
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928 |
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929 self.assertRaises(Exception, lambda: RenderFrame(path, 0)) |
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930 self.assertRaises(Exception, lambda: RenderFrame(path, 2)) |
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|
931 |
|
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|
932 frame1 = RenderFrame(path, 1) |
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933 im = UncompressImage(frame1) |
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934 self.assertEqual("L", im.mode) |
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935 self.assertEqual(512, im.size[0]) |
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936 self.assertEqual(358, im.size[1]) |
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|
937 |
|
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|
938 defaultFrame = DoPost(ORTHANC, '/dicom-web/servers/sample/get', { |
|
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|
939 'Uri' : '%s/rendered' % path |
|
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|
940 }) |
|
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|
941 |
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|
942 self.assertEqual(len(frame1), len(defaultFrame)) |
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|
943 self.assertEqual(frame1, defaultFrame) |
|
259
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|
944 |
|
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|
945 |
|
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|
946 def test_qido_parent_attributes(self): |
|
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|
947 UploadInstance(ORTHANC, 'Brainix/Flair/IM-0001-0001.dcm') |
|
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|
948 study = '2.16.840.1.113669.632.20.1211.10000357775' |
|
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|
949 series = '1.3.46.670589.11.0.0.11.4.2.0.8743.5.5396.2006120114285654497' |
|
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|
950 instance = '1.3.46.670589.11.0.0.11.4.2.0.8743.5.5396.2006120114314079549' |
|
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|
951 |
|
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|
952 a = DoGet(ORTHANC, '/dicom-web/studies') |
|
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|
953 self.assertEqual(1, len(a)) |
|
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954 self.assertFalse('00080018' in a[0]) # SOPInstanceUID |
|
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955 self.assertFalse('0020000E' in a[0]) # SeriesInstanceUID |
|
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956 self.assertEqual(study, a[0]['0020000D']['Value'][0]) |
|
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957 self.assertEqual('BRAINIX', a[0]['00100010']['Value'][0]['Alphabetic']) |
|
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|
958 |
|
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|
959 a = DoGet(ORTHANC, '/dicom-web/studies?0020000D=%s' % study) |
|
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|
960 self.assertEqual(1, len(a)) |
|
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961 self.assertFalse('00080018' in a[0]) # SOPInstanceUID |
|
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962 self.assertFalse('0020000E' in a[0]) # SeriesInstanceUID |
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963 self.assertEqual(study, a[0]['0020000D']['Value'][0]) |
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964 self.assertEqual('BRAINIX', a[0]['00100010']['Value'][0]['Alphabetic']) |
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965 |
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966 a = DoGet(ORTHANC, '/dicom-web/series') |
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967 self.assertEqual(1, len(a)) |
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968 self.assertFalse('00080018' in a[0]) |
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969 self.assertEqual(study, a[0]['0020000D']['Value'][0]) |
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970 self.assertEqual(series, a[0]['0020000E']['Value'][0]) |
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971 self.assertEqual('MR', a[0]['00080060']['Value'][0]) |
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972 self.assertEqual('BRAINIX', a[0]['00100010']['Value'][0]['Alphabetic']) |
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973 |
|
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974 a = DoGet(ORTHANC, '/dicom-web/instances') |
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975 self.assertEqual(1, len(a)) |
|
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976 self.assertEqual(study, a[0]['0020000D']['Value'][0]) |
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977 self.assertEqual(series, a[0]['0020000E']['Value'][0]) |
|
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978 self.assertEqual(instance, a[0]['00080018']['Value'][0]) |
|
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979 self.assertEqual('MR', a[0]['00080060']['Value'][0]) |
|
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980 self.assertEqual('BRAINIX', a[0]['00100010']['Value'][0]['Alphabetic']) |
|
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|
981 |
|
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|
982 a = DoGet(ORTHANC, '/dicom-web/studies/%s/series' % study) |
|
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983 self.assertEqual(1, len(a)) |
|
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|
984 self.assertFalse('00080018' in a[0]) |
|
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|
985 self.assertEqual(study, a[0]['0020000D']['Value'][0]) |
|
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|
986 self.assertEqual(series, a[0]['0020000E']['Value'][0]) |
|
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987 self.assertEqual('MR', a[0]['00080060']['Value'][0]) |
|
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|
988 self.assertEqual('BRAINIX', a[0]['00100010']['Value'][0]['Alphabetic']) |
|
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|
989 |
|
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|
990 a = DoGet(ORTHANC, '/dicom-web/studies/%s/series/%s/instances' % (study, series)) |
|
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|
991 self.assertEqual(1, len(a)) |
|
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|
992 self.assertEqual(study, a[0]['0020000D']['Value'][0]) |
|
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|
993 self.assertEqual(series, a[0]['0020000E']['Value'][0]) |
|
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|
994 self.assertEqual(instance, a[0]['00080018']['Value'][0]) |
|
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|
995 self.assertEqual('MR', a[0]['00080060']['Value'][0]) |
|
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|
996 self.assertEqual('BRAINIX', a[0]['00100010']['Value'][0]['Alphabetic']) |
|
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|
997 |
|
298f80c6ccc4
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|
998 # "If {StudyInstanceUID} is not specified, all Study-level |
|
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|
999 # attributes specified in Table 6.7.1-2" => Here, |
|
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|
1000 # {StudyInstanceUID} *is* specified, so we must *not* get the |
|
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|
1001 # PatientName. |
|
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|
1002 # http://dicom.nema.org/medical/dicom/2019a/output/html/part18.html#table_6.7.1-2a |
|
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|
1003 a = DoGet(ORTHANC, '/dicom-web/series?0020000D=%s' % study) |
|
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1004 self.assertEqual(1, len(a)) |
|
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1005 self.assertFalse('00100010' in a[0]) # PatientName |
|
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1006 self.assertEqual(study, a[0]['0020000D']['Value'][0]) |
|
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1007 self.assertEqual(series, a[0]['0020000E']['Value'][0]) |
|
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1008 self.assertEqual('MR', a[0]['00080060']['Value'][0]) |
|
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|
1009 |
|
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|
1010 # http://dicom.nema.org/medical/dicom/2019a/output/html/part18.html#table_6.7.1-2b |
|
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1011 a = DoGet(ORTHANC, '/dicom-web/instances?0020000D=%s' % study) |
|
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|
1012 self.assertEqual(1, len(a)) |
|
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|
1013 self.assertFalse('00100010' in a[0]) # PatientName |
|
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|
1014 self.assertEqual(study, a[0]['0020000D']['Value'][0]) |
|
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|
1015 self.assertEqual(series, a[0]['0020000E']['Value'][0]) |
|
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|
1016 self.assertEqual('MR', a[0]['00080060']['Value'][0]) |
|
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|
1017 |
|
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|
1018 a = DoGet(ORTHANC, '/dicom-web/instances?0020000E=%s' % series) |
|
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|
1019 self.assertEqual(1, len(a)) |
|
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|
1020 self.assertFalse('00080060' in a[0]) # Modality |
|
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|
1021 self.assertEqual(study, a[0]['0020000D']['Value'][0]) |
|
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1022 self.assertEqual(series, a[0]['0020000E']['Value'][0]) |
|
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|
1023 self.assertEqual('BRAINIX', a[0]['00100010']['Value'][0]['Alphabetic']) |
|
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|
1024 |
|
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changeset
|
1025 a = DoGet(ORTHANC, '/dicom-web/instances?0020000D=%s&0020000E=%s' % (study, series)) |
|
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|
1026 self.assertEqual(1, len(a)) |
|
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|
1027 self.assertFalse('00100010' in a[0]) # PatientName |
|
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|
1028 self.assertFalse('00080060' in a[0]) # Modality |
|
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1029 self.assertEqual(study, a[0]['0020000D']['Value'][0]) |
|
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|
1030 self.assertEqual(series, a[0]['0020000E']['Value'][0]) |
|
261
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1031 |
|
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changeset
|
1032 |
|
270
082f35cb4459
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|
1033 #@unittest.skip("Skip this test on GDCM 2.8.4") |
|
261
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|
1034 def test_bitbucket_issue_164(self): |
|
270
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|
1035 # WARNING - This makes GDCM 2.8.4 crash |
| 319 | 1036 # https://bugs.orthanc-server.com/show_bug.cgi?id=164 |
|
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|
1037 UploadInstance(ORTHANC, 'Issue164.dcm') |
|
b8cdb0aef4b9
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1038 |
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1039 p = DoGetMultipart(ORTHANC, 'dicom-web/studies/1.2.276.0.26.1.1.1.2.2020.45.52293.1506048/series/1.2.276.0.26.1.1.1.2.2020.45.52293.6384450/instances/1.2.276.0.26.1.1.1.2.2020.45.52366.2551599.179568640/frames/5') |
|
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|
1040 self.assertEqual(1, len(p)) |
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1041 self.assertEqual(743 * 975 * 3, len(p[0])) |
| 304 | 1042 |
| 1043 if HasGdcmPlugin(ORTHANC): | |
| 1044 self.assertTrue(ComputeMD5(p[0]) in [ | |
| 1045 'b952d67da9ff004b0adae3982e89d620', # GDCM >= 3.0 | |
| 1046 'b3662c4bfa24a0c73abb08548c63319b' # Fallback to DCMTK | |
| 1047 ]) | |
| 1048 else: | |
| 1049 self.assertEqual('b3662c4bfa24a0c73abb08548c63319b', ComputeMD5(p[0])) # DCMTK | |
|
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1050 |
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1051 |
| 271 | 1052 def test_bitbucket_issue_168(self): |
| 276 | 1053 # "Plugins can't read private tags from the configuration |
| 1054 # file" This test will fail if DCMTK <= 3.6.1 (e.g. on Ubuntu | |
| 1055 # 16.04), or if Orthanc <= 1.5.8 | |
| 319 | 1056 # https://bugs.orthanc-server.com/show_bug.cgi?id=168 |
|
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|
1057 |
|
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test_bitbuck_issue_168
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1058 UploadInstance(ORTHANC, 'Issue168.dcm') |
|
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1059 |
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test_bitbuck_issue_168
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1060 a = DoGet(ORTHANC, '/dicom-web/studies') |
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1061 self.assertEqual(1, len(a)) |
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1062 self.assertFalse('00090010' in a[0]) |
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1063 self.assertFalse('00091001' in a[0]) |
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1064 self.assertEqual('20170404', a[0]['00080020']['Value'][0]) |
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1065 |
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1066 a = DoGet(ORTHANC, '/dicom-web/studies?includefield=00091001') |
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1067 self.assertEqual(1, len(a)) |
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1068 self.assertFalse('00090010' in a[0]) |
|
325
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1069 self.assertTrue('00091001' in a[0]) # This fails if DCMTK <= 3.6.1 |
|
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1070 self.assertEqual('DS', a[0]['00091001']['vr']) |
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1071 self.assertEqual(1, len(a[0]['00091001']['Value'])) |
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1072 self.assertAlmostEqual(98.41, a[0]['00091001']['Value'][0]) |
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1073 |
|
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1074 a = DoGet(ORTHANC, '/dicom-web/studies?00090010=Lunit&includefield=00091001') |
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1075 self.assertEqual(1, len(a)) |
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1076 self.assertTrue('00090010' in a[0]) |
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1077 self.assertEqual('LO', a[0]['00090010']['vr']) |
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1078 self.assertEqual(1, len(a[0]['00090010']['Value'])) |
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1079 self.assertEqual('Lunit', a[0]['00090010']['Value'][0]) |
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1080 self.assertTrue('00091001' in a[0]) |
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1081 self.assertEqual('DS', a[0]['00091001']['vr']) |
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1082 self.assertEqual(1, len(a[0]['00091001']['Value'])) |
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1083 self.assertAlmostEqual(98.41, a[0]['00091001']['Value'][0]) |
|
249
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1084 |
|
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1085 a = DoGet(ORTHANC, '/dicom-web/studies?00090010=Lunit2&includefield=00091001') |
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1086 self.assertEqual(0, len(a)) |
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1087 |
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1088 |
|
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|
1089 def test_rendered_studies_series(self): |
|
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1090 i = UploadInstance(ORTHANC, 'Phenix/IM-0001-0001.dcm') ['ID'] |
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1091 study = DoGet(ORTHANC, '/instances/%s/tags?simplify' % i) ['StudyInstanceUID'] |
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1092 series = DoGet(ORTHANC, '/instances/%s/tags?simplify' % i) ['SeriesInstanceUID'] |
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1093 instance = DoGet(ORTHANC, '/instances/%s/tags?simplify' % i) ['SOPInstanceUID'] |
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1094 |
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1095 a = DoPost(ORTHANC, '/dicom-web/servers/sample/get', { |
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1096 'Uri' : '/studies/%s/series/%s/instances/%s/rendered' % (study, series, instance) |
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1097 }) |
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1098 |
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1099 im = UncompressImage(a) |
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1100 self.assertEqual("L", im.mode) |
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1101 self.assertEqual(512, im.size[0]) |
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1102 self.assertEqual(358, im.size[1]) |
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1103 |
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1104 b = DoPost(ORTHANC, '/dicom-web/servers/sample/get', { |
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1105 'Uri' : '/studies/%s/series/%s/rendered' % (study, series) |
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1106 }) |
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1107 |
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1108 self.assertEqual(len(a), len(b)) |
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1109 self.assertEqual(a, b) |
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1110 |
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1111 c = DoPost(ORTHANC, '/dicom-web/servers/sample/get', { |
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1112 'Uri' : '/studies/%s/rendered' % study |
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1113 }) |
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1114 |
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1115 self.assertEqual(len(a), len(c)) |
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1116 self.assertEqual(a, c) |
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1117 |
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1118 |
|
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test_multiple_mime_accept_wado_rs
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1119 def test_multiple_mime_accept_wado_rs(self): |
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1120 # "Multiple MIME type Accept Headers for Wado-RS" |
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1121 # https://groups.google.com/forum/#!msg/orthanc-users/P3B6J9abZpE/syn5dnW2AwAJ |
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1122 |
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1123 UploadInstance(ORTHANC, 'DummyCT.dcm') |
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1124 study = '1.2.840.113619.2.176.2025.1499492.7391.1171285944.390' |
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1125 |
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1126 self.assertEqual(1, len(DoGet(ORTHANC, '/dicom-web/studies/%s/metadata' % study))) |
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1127 |
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1128 self.assertEqual(1, len(DoGet(ORTHANC, '/dicom-web/studies/%s/metadata' % study, |
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1129 headers = { 'Accept' : 'application/json, application/dicom+json' }))) |
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1130 |
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1131 self.assertEqual(1, len(DoGet(ORTHANC, '/dicom-web/studies/%s/metadata' % study, |
| 274 | 1132 headers = { 'Accept' : 'application/json' }))) |
| 1133 | |
| 1134 self.assertEqual(1, len(DoGet(ORTHANC, '/dicom-web/studies/%s/metadata' % study, | |
| 1135 headers = { 'Accept' : 'application/dicom+json' }))) | |
| 1136 | |
| 1137 self.assertEqual(1, len(DoGet(ORTHANC, '/dicom-web/studies/%s/metadata' % study, | |
|
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1138 headers = { 'Accept' : 'toto, application/dicom+json' }))) |
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1139 |
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1140 self.assertEqual(1, len(DoGet(ORTHANC, '/dicom-web/studies/%s/metadata' % study, |
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1141 headers = { 'Accept' : 'application/json, tata' }))) |
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1142 |
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1143 self.assertRaises(Exception, lambda: DoGet(ORTHANC, '/dicom-web/studies/%s/metadata' % study, |
| 274 | 1144 headers = { 'Accept' : 'toto' })) |
| 1145 | |
| 1146 self.assertRaises(Exception, lambda: DoGet(ORTHANC, '/dicom-web/studies/%s/metadata' % study, | |
|
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1147 headers = { 'Accept' : 'toto, tata' })) |
| 275 | 1148 |
| 1149 # https://groups.google.com/d/msg/orthanc-users/9o5kItsMQI0/Og6B27YyBgAJ | |
| 1150 self.assertEqual(1, len(DoGetMultipart(ORTHANC, '/dicom-web/studies/%s/metadata' % study, | |
| 1151 headers = { 'Accept' : 'multipart/related;type=application/dicom+xml' }))) | |
| 1152 | |
| 1153 self.assertEqual(1, len(DoGet(ORTHANC, '/dicom-web/studies/%s/metadata' % study, | |
| 1154 headers = { 'Accept' : 'application/json, application/dicom+xml' }))) | |
| 1155 | |
| 1156 self.assertEqual(1, len(DoGet(ORTHANC, '/dicom-web/studies/%s/metadata' % study, | |
| 1157 headers = { 'Accept' : 'application/dicom+xml, application/json' }))) | |
|
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1158 |
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1159 |
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1160 |
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1161 def test_bitbucket_issue_56(self): |
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1162 # "Case-insensitive matching over accents" => DICOMweb part |
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1163 # from AlexanderM on 2020-03-20 |
| 319 | 1164 # https://bugs.orthanc-server.com/show_bug.cgi?id=56 |
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1165 UploadInstance(ORTHANC, 'Issue56-NoPixelData.dcm') |
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1166 |
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1167 self.assertEqual(1, len(DoPost(ORTHANC, '/tools/find', { |
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1168 'Level' : 'Patient', |
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1169 'Query' : { |
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1170 'PatientName' : 'Гусева*', |
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1171 }, |
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1172 }))) |
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1173 |
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1174 self.assertEqual(1, len(DoPost(ORTHANC, '/tools/find', { |
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1175 'Level' : 'Patient', |
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1176 'Query' : { |
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1177 'PatientName' : 'гусева*', |
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1178 }, |
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1179 }))) |
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1180 |
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1181 self.assertEqual(1, len(DoGet(ORTHANC, u'/dicom-web/studies?PatientName=Гусева*', |
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1182 headers = { 'accept' : 'application/json' }))) |
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1183 |
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1184 # This line is the issue |
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1185 self.assertEqual(1, len(DoGet(ORTHANC, u'/dicom-web/studies?PatientName=гусева*', |
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1186 headers = { 'accept' : 'application/json' }))) |
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1187 |
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1188 |
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1189 def test_frames_transcoding(self): |
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1190 ACCEPT = { |
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1191 '1.2.840.10008.1.2' : 'multipart/related; type=application/octet-stream; transfer-syntax=1.2.840.10008.1.2', |
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1192 '1.2.840.10008.1.2.1' : 'multipart/related; type=application/octet-stream; transfer-syntax=1.2.840.10008.1.2.1', |
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1193 '1.2.840.10008.1.2.4.50' : 'multipart/related; type=image/jpeg; transfer-syntax=1.2.840.10008.1.2.4.50', |
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1194 '1.2.840.10008.1.2.4.51' : 'multipart/related; type=image/jpeg; transfer-syntax=1.2.840.10008.1.2.4.51', |
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1195 '1.2.840.10008.1.2.4.57' : 'multipart/related; type=image/jpeg; transfer-syntax=1.2.840.10008.1.2.4.57', |
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1196 '1.2.840.10008.1.2.4.70' : 'multipart/related; type=image/jpeg; transfer-syntax=1.2.840.10008.1.2.4.70', |
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1197 } |
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1198 |
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1199 uri = 'dicom-web%s' % UploadAndGetWadoPath('TransferSyntaxes/1.2.840.10008.1.2.4.50.dcm') |
| 304 | 1200 truth = Image.open(GetDatabasePath('TransferSyntaxes/1.2.840.10008.1.2.4.50.png')) |
| 1201 | |
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1202 a = DoGetMultipart(ORTHANC, '%s/frames/1' % uri, |
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1203 headers = { 'Accept' : ACCEPT['1.2.840.10008.1.2.4.50'] }, |
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1204 returnHeaders = True) |
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1205 self.assertEqual(1, len(a)) |
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1206 self.assertEqual(2, len(a[0])) |
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1207 self.assertEqual('%s%s/frames/1' % (ORTHANC['Url'], uri), |
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1208 a[0][1]['Content-Location']) |
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1209 self.assertEqual(ACCEPT['1.2.840.10008.1.2.4.50'], |
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1210 'multipart/related; type=%s' % a[0][1]['Content-Type']) |
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1211 self.assertEqual(53476, len(a[0][0])) |
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1212 self.assertEqual('142fdb8a1dc2aa7e6b8952aa294a6e22', ComputeMD5(a[0][0])) |
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1213 |
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1214 a = DoGetMultipart(ORTHANC, '%s/frames/1' % uri) |
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1215 self.assertEqual(1, len(a)) |
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1216 self.assertEqual(480 * 640 * 3, len(a[0])) |
| 304 | 1217 |
| 1218 # http://effbot.org/zone/pil-comparing-images.htm | |
| 1219 img = Image.frombytes('RGB', [ 640, 480 ], a[0]) | |
| 1220 self.assertLessEqual(GetMaxImageDifference(img, truth), 2) | |
| 1221 | |
|
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1222 ACCEPT2 = copy.deepcopy(ACCEPT) |
| 304 | 1223 if HasGdcmPlugin(ORTHANC): |
|
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1224 IS_GDCM = True |
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1225 ACCEPT2['1.2.840.10008.1.2.1'] = 'multipart/related; type=application/octet-stream' |
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1226 del ACCEPT2['1.2.840.10008.1.2'] |
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1227 else: |
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1228 self.assertEqual('dfdc79f5070926bbb8ac079ee91f5b91', ComputeMD5(a[0])) |
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1229 IS_GDCM = False |
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1230 |
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1231 a = DoGetMultipart(ORTHANC, '%s/frames/1' % uri, |
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1232 headers = { 'Accept' : ACCEPT2['1.2.840.10008.1.2.1'] }) |
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1233 self.assertEqual(1, len(a)) |
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1234 self.assertEqual(480 * 640 * 3, len(a[0])) |
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1235 |
| 304 | 1236 img = Image.frombytes('RGB', [ 640, 480 ], a[0]) |
| 1237 self.assertLessEqual(GetMaxImageDifference(img, truth), 2) | |
| 1238 | |
| 1239 if not IS_GDCM: | |
|
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1240 self.assertEqual('dfdc79f5070926bbb8ac079ee91f5b91', ComputeMD5(a[0])) |
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1241 |
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1242 |
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1243 # Test download using the same transfer syntax |
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1244 RESULTS = { |
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1245 '1.2.840.10008.1.2' : 'f54c7ea520ab3ec32b6303581ecd262f', |
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1246 '1.2.840.10008.1.2.1' : '4b350b9353a93c747917c7c3bf9b8f44', |
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1247 '1.2.840.10008.1.2.4.50' : '142fdb8a1dc2aa7e6b8952aa294a6e22', |
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1248 '1.2.840.10008.1.2.4.51' : '8b37945d75f9d2899ed868bdba429a0d', |
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1249 '1.2.840.10008.1.2.4.57' : '75c84823eddb560d127b1d24c9406f30', |
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1250 '1.2.840.10008.1.2.4.70' : '2c35726328f0200396e583a0038b0269', |
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1251 } |
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1252 |
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1253 if IS_GDCM: |
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1254 # This file was failing with GDCM, as it has 2 fragments, |
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1255 # and only the first one was returned => the MD5 below is BAD |
| 304 | 1256 #RESULTS['1.2.840.10008.1.2.4.51'] = '901963a322a817946b074f9ed0afa060' |
| 1257 pass | |
| 1258 | |
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1259 for syntax in ACCEPT2: |
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1260 uri = '/dicom-web%s' % UploadAndGetWadoPath('TransferSyntaxes/%s.dcm' % syntax) |
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1261 a = DoGetMultipart(ORTHANC, '%s/frames/1' % uri, |
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1262 headers = { 'Accept' : ACCEPT2[syntax] }) |
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1263 self.assertEqual(1, len(a)) |
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1264 self.assertEqual(RESULTS[syntax], ComputeMD5(a[0])) |
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1265 |
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1266 # Test transcoding to all the possible transfer syntaxes |
|
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1267 uri = 'dicom-web%s' % UploadAndGetWadoPath('KarstenHilbertRF.dcm') |
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1268 for syntax in ACCEPT2: |
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1269 a = DoGetMultipart(ORTHANC, '%s/frames/1' % uri, |
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1270 headers = { 'Accept' : ACCEPT2[syntax] }, |
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1271 returnHeaders = True) |
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1272 self.assertEqual(1, len(a)) |
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1273 self.assertEqual(2, len(a[0])) |
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1274 self.assertEqual('%s%s/frames/1' % (ORTHANC['Url'], uri), |
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1275 a[0][1]['Content-Location']) |
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1276 self.assertEqual(ACCEPT[syntax], |
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1277 'multipart/related; type=%s' % a[0][1]['Content-Type']) |
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1278 if IS_GDCM: |
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1279 self.assertEqual({ |
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1280 '1.2.840.10008.1.2' : '1c8cebde0c74450ce4dfb75dd52ddad7', |
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1281 '1.2.840.10008.1.2.1' : '1c8cebde0c74450ce4dfb75dd52ddad7', |
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1282 '1.2.840.10008.1.2.4.50' : 'f4d145e5f33fbd39375ce0f91453d6cc', |
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1283 '1.2.840.10008.1.2.4.51' : 'f4d145e5f33fbd39375ce0f91453d6cc', |
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1284 '1.2.840.10008.1.2.4.57' : 'dc55800ce1a8ac556c266cdb26d75757', |
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1285 '1.2.840.10008.1.2.4.70' : 'dc55800ce1a8ac556c266cdb26d75757', |
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1286 } [syntax], ComputeMD5(a[0][0])) |
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1287 else: |
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1288 self.assertEqual({ |
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1289 '1.2.840.10008.1.2' : '1c8cebde0c74450ce4dfb75dd52ddad7', |
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1290 '1.2.840.10008.1.2.1' : '1c8cebde0c74450ce4dfb75dd52ddad7', |
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1291 '1.2.840.10008.1.2.4.50' : '0a0ab74fe7c68529bdd416fc9e5e742a', |
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1292 '1.2.840.10008.1.2.4.51' : '33d1ab2fe169c5b5ba932a9bbc3c6306', |
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1293 '1.2.840.10008.1.2.4.57' : '3d21c969da846ca41e0498a0dcfad061', |
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1294 '1.2.840.10008.1.2.4.70' : '49d5353c8673208629847ad45a855557', |
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1295 } [syntax], ComputeMD5(a[0][0])) |
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1296 |
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1297 |
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1298 # JPEG image with many fragments for 2 frames |
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1299 uri = '/dicom-web%s' % UploadAndGetWadoPath('LenaTwiceWithFragments.dcm') |
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1300 |
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1301 a = DoGetMultipart(ORTHANC, '%s/frames/1' % uri, |
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1302 headers = { 'Accept' : ACCEPT['1.2.840.10008.1.2.4.50'] }) |
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1303 self.assertEqual(1, len(a)) |
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1304 self.assertEqual(69214, len(a[0])) |
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1305 self.assertEqual('0eaf36d4881c513ca70b6684bfaa5b08', ComputeMD5(a[0])) |
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1306 |
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1307 b = DoGetMultipart(ORTHANC, '%s/frames/2' % uri, |
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1308 headers = { 'Accept' : ACCEPT['1.2.840.10008.1.2.4.50'] }) |
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1309 self.assertEqual(1, len(b)) |
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1310 self.assertEqual(a[0], b[0]) |
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1311 |
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1312 b = DoGetMultipart(ORTHANC, '%s/frames/1,2' % uri, |
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1313 headers = { 'Accept' : ACCEPT['1.2.840.10008.1.2.4.50'] }) |
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1314 self.assertEqual(2, len(b)) |
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1315 self.assertEqual(a[0], b[0]) |
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1316 self.assertEqual(a[0], b[1]) |
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1317 |
|
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1318 |
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1319 def test_wado_transcoding(self): |
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1320 uri = '/dicom-web%s' % UploadAndGetWadoPath('TransferSyntaxes/1.2.840.10008.1.2.4.50.dcm') |
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1321 |
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1322 compressedSize = os.path.getsize(GetDatabasePath('TransferSyntaxes/1.2.840.10008.1.2.4.50.dcm')) |
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1323 |
|
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1324 self.assertRaises(Exception, lambda: DoGetMultipart(ORTHANC, '%s' % uri, |
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1325 headers = { 'Accept' : 'nope' })) |
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1326 |
|
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1327 # Up to release 1.5 of the DICOMweb plugin, if no |
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1328 # transfer-syntax was specified, no transcoding occured. This |
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1329 # was because of an undefined behavior up to DICOM |
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1330 # 2016b. Starting with DICOM 2016c, the standard explicitly |
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1331 # states that the image should be transcoded to Little Endian |
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1332 # Explicit. |
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1333 a = DoGetMultipart(ORTHANC, '%s' % uri, |
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1334 headers = { }) |
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1335 self.assertEqual(1, len(a)) |
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1336 self.assertEqual('1.2.840.10008.1.2.1', GetTransferSyntax(a[0])) |
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1337 self.assertTrue(10 * compressedSize < len(a[0])) |
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1338 uncompressedSize = len(a[0]) |
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1339 |
|
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1340 a = DoGetMultipart(ORTHANC, '%s' % uri, |
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1341 headers = { 'Accept' : 'multipart/related' }) |
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1342 self.assertEqual(1, len(a)) |
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1343 self.assertEqual('1.2.840.10008.1.2.1', GetTransferSyntax(a[0])) |
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1344 self.assertEqual(uncompressedSize, len(a[0])) |
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1345 |
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1346 a = DoGetMultipart(ORTHANC, '%s' % uri, |
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1347 headers = { 'Accept' : 'multipart/related; type=application/dicom' }) |
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1348 self.assertEqual(1, len(a)) |
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1349 self.assertEqual('1.2.840.10008.1.2.1', GetTransferSyntax(a[0])) |
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1350 self.assertEqual(uncompressedSize, len(a[0])) |
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1351 |
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1352 a = DoGetMultipart(ORTHANC, '%s' % uri, |
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1353 headers = { 'Accept' : 'multipart/related; type=application/dicom; transfer-syntax=*' }) |
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1354 self.assertEqual(1, len(a)) |
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1355 self.assertEqual('1.2.840.10008.1.2.4.50', GetTransferSyntax(a[0])) |
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1356 self.assertEqual(compressedSize, len(a[0])) |
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1357 |
|
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1358 # Use source transfer syntax |
|
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1359 a = DoGetMultipart(ORTHANC, '%s' % uri, |
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1360 headers = { 'Accept' : 'multipart/related; type=application/dicom; transfer-syntax=1.2.840.10008.1.2.4.50' }) |
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1361 self.assertEqual(1, len(a)) |
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1362 self.assertEqual('1.2.840.10008.1.2.4.50', GetTransferSyntax(a[0])) |
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1363 self.assertEqual(compressedSize, len(a[0])) |
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1364 |
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1365 a = DoGetMultipart(ORTHANC, '%s' % uri, |
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1366 headers = { 'Accept' : 'multipart/related; type=application/dicom; transfer-syntax=1.2.840.10008.1.2.1' }) |
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1367 self.assertEqual(1, len(a)) |
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1368 self.assertEqual('1.2.840.10008.1.2.1', GetTransferSyntax(a[0])) |
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1369 self.assertEqual(uncompressedSize, len(a[0])) |
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1370 |
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1371 # Transcoding |
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1372 a = DoGetMultipart(ORTHANC, '%s' % uri, |
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1373 headers = { 'Accept' : 'multipart/related; type=application/dicom; transfer-syntax=1.2.840.10008.1.2.4.57' }) |
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1374 self.assertEqual(1, len(a)) |
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1375 self.assertEqual('1.2.840.10008.1.2.4.57', GetTransferSyntax(a[0])) |
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1376 self.assertNotEqual(compressedSize, len(a[0])) |
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1377 self.assertNotEqual(uncompressedSize, len(a[0])) |
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1378 |
|
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1379 |
|
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1380 def test_compare_wado_uri_and_rs(self): |
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1381 # https://groups.google.com/d/msg/orthanc-users/mKgr2QAKTCU/R7u4I1LvBAAJ |
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1382 |
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1383 # Image "2020-08-12-Christopher.dcm" corresponds to the result of: |
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1384 # $ gdcmconv --raw 1.2.840.113704.9.1000.16.2.20190613104005642000100010001.dcm 2020-08-12-Christopher.dcm |
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1385 # Image "2020-08-12-Christopher.png" corresponds to "2.png" |
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1386 |
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1387 i = UploadInstance(ORTHANC, '2020-08-12-Christopher.dcm') ['ID'] |
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1388 STUDY = '1.2.840.113704.9.1000.16.0.20190613103939444' |
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1389 SERIES = '1.2.840.113704.9.1000.16.1.2019061310394289000010001' |
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1390 INSTANCE = '1.2.840.113704.9.1000.16.2.20190613104005642000100010001' |
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1391 |
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1392 with open(GetDatabasePath('2020-08-12-Christopher.png'), 'rb') as f: |
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1393 truth = UncompressImage(f.read()) |
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1394 |
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1395 im1 = GetImage(ORTHANC, args.wado + '?requestType=WADO&objectUID=%s&contentType=image/jpg' % INSTANCE) |
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1396 self.assertEqual('JPEG', im1.format) |
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1397 |
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1398 im2 = GetImage(ORTHANC, args.wado + '?requestType=WADO&objectUID=%s&contentType=image/png' % INSTANCE) |
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1399 self.assertEqual('PNG', im2.format) |
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1400 |
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1401 im3 = GetImage(ORTHANC, '/dicom-web/studies/%s/series/%s/instances/%s/frames/1/rendered' % (STUDY, SERIES, INSTANCE)) |
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1402 self.assertEqual('JPEG', im3.format) |
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1403 |
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1404 im4 = GetImage(ORTHANC, '/dicom-web/studies/%s/series/%s/instances/%s/rendered' % (STUDY, SERIES, INSTANCE), |
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1405 headers = { 'Accept' : 'image/png' }) |
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1406 self.assertEqual('PNG', im4.format) |
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1407 |
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1408 im5 = GetImage(ORTHANC, '/instances/%s/rendered' % i, { 'Accept' : 'image/jpeg' }) |
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1409 self.assertEqual('JPEG', im5.format) |
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1410 |
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1411 im6 = GetImage(ORTHANC, '/instances/%s/rendered' % i) |
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1412 self.assertEqual('PNG', im6.format) |
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1413 |
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1414 for im in [ truth, im1, im2, im3, im4, im5, im6 ]: |
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1415 self.assertEqual('L', im.mode) |
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1416 self.assertEqual(512, im.size[0]) |
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1417 self.assertEqual(512, im.size[1]) |
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1418 |
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1419 im2.save('/tmp/a.png') |
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1420 im4.save('/tmp/b.png') |
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1421 im6.save('/tmp/c.png') |
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1422 |
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1423 # The following fails in DICOMweb plugin <= 1.2, as "/rendered" |
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1424 # was redirecting to the "/preview" route of Orthanc |
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1425 # http://effbot.org/zone/pil-comparing-images.htm |
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1426 self.assertTrue(ImageChops.difference(im1, im3).getbbox() is None) |
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1427 self.assertTrue(ImageChops.difference(im1, im5).getbbox() is None) |
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1428 self.assertTrue(ImageChops.difference(im2, im4).getbbox() is None) |
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1429 self.assertTrue(ImageChops.difference(im2, im6).getbbox() is None) |
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1430 self.assertTrue(ImageChops.difference(im3, im5).getbbox() is None) |
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1431 self.assertTrue(ImageChops.difference(im4, im6).getbbox() is None) |
| 345 | 1432 |
| 1433 bbox = ImageChops.difference(im2, truth).getbbox() | |
| 346 | 1434 if bbox != None: |
| 1435 # Tolerance of just 1 pixel of difference (needed on Windows) | |
| 1436 #print(im2.getpixel((238,275))) # => 255 | |
| 1437 #print(truth.getpixel((238,275))) # => 254 | |
| 1438 self.assertLessEqual(abs(bbox[2] - bbox[0]), 1) | |
| 1439 self.assertLessEqual(abs(bbox[3] - bbox[1]), 1) | |
|
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1440 |
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1441 |
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1442 def test_issue_195(self): |
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1443 # This fails on Orthanc <= 1.9.2 |
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1444 # https://bugs.orthanc-server.com/show_bug.cgi?id=195 |
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1445 a = UploadInstance(ORTHANC, 'Issue195.dcm') ['ID'] |
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1446 b = DoGet(ORTHANC, 'dicom-web/studies/1.2.276.0.7230010.3.1.2.8323329.13188.1620309604.848733/series/1.2.276.0.7230010.3.1.3.8323329.13188.1620309604.848734/instances/1.2.276.0.7230010.3.1.4.8323329.13188.1620309604.848735/metadata', |
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1447 headers = { 'Accept' : 'application/dicom+json' }) |
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1448 |
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1449 self.assertEqual(1, len(b)) |
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1450 self.assertEqual(5, len(b[0])) |
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1451 |
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1452 # The expected result can be found by typing "dcm2json Database/Issue195.dcm" |
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1453 self.assertEqual(2, len(b[0]["00080018"])) |
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1454 self.assertEqual("UI", b[0]["00080018"]["vr"]) |
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1455 self.assertEqual("1.2.276.0.7230010.3.1.4.8323329.13188.1620309604.848735", |
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1456 b[0]["00080018"]["Value"][0]) |
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1457 |
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1458 self.assertEqual(2, len(b[0]["0020000D"])) |
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1459 self.assertEqual("UI", b[0]["0020000D"]["vr"]) |
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1460 self.assertEqual("1.2.276.0.7230010.3.1.2.8323329.13188.1620309604.848733", |
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1461 b[0]["0020000D"]["Value"][0]) |
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1462 |
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1463 self.assertEqual(2, len(b[0]["0020000E"])) |
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1464 self.assertEqual("UI", b[0]["0020000E"]["vr"]) |
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1465 self.assertEqual("1.2.276.0.7230010.3.1.3.8323329.13188.1620309604.848734", |
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1466 b[0]["0020000E"]["Value"][0]) |
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1467 |
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1468 self.assertEqual(1, len(b[0]["00081030"])) # Case of an empty value |
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1469 self.assertEqual("LO", b[0]["00081030"]["vr"]) |
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1470 |
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1471 self.assertEqual(2, len(b[0]["0008103E"])) |
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1472 self.assertEqual("LO", b[0]["0008103E"]["vr"]) |
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1473 self.assertEqual("Hello1", b[0]["0008103E"]["Value"][0]) |
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1474 |
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1475 |
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1476 DoDelete(ORTHANC, 'instances/%s' % a) |
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1477 a = UploadInstance(ORTHANC, 'Issue195-bis.dcm') ['ID'] |
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1478 URI = 'dicom-web/studies/1.2.276.0.7230010.3.1.2.8323329.23653.1620311964.865418/series/1.2.276.0.7230010.3.1.3.8323329.23653.1620311964.865419/instances/1.2.276.0.7230010.3.1.4.8323329.23653.1620311964.865420' |
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1479 b = DoGet(ORTHANC, '%s/metadata' % URI, |
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1480 headers = { 'Accept' : 'application/dicom+json' }) |
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1481 |
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1482 self.assertEqual(1, len(b)) |
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1483 self.assertEqual(5, len(b[0])) |
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1484 |
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1485 # The expected result can be found by typing "dcm2json Database/Issue195-bis.dcm" |
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1486 self.assertEqual(2, len(b[0]["00080018"])) |
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1487 self.assertEqual("UI", b[0]["00080018"]["vr"]) |
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1488 self.assertEqual("1.2.276.0.7230010.3.1.4.8323329.23653.1620311964.865420", |
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1489 b[0]["00080018"]["Value"][0]) |
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1490 |
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1491 self.assertEqual(2, len(b[0]["0020000D"])) |
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1492 self.assertEqual("UI", b[0]["0020000D"]["vr"]) |
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1493 self.assertEqual("1.2.276.0.7230010.3.1.2.8323329.23653.1620311964.865418", |
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1494 b[0]["0020000D"]["Value"][0]) |
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1495 |
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1496 self.assertEqual(2, len(b[0]["0020000E"])) |
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1497 self.assertEqual("UI", b[0]["0020000E"]["vr"]) |
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1498 self.assertEqual("1.2.276.0.7230010.3.1.3.8323329.23653.1620311964.865419", |
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1499 b[0]["0020000E"]["Value"][0]) |
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1500 |
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1501 self.assertEqual(2, len(b[0]["0008103E"])) |
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1502 self.assertEqual("UN", b[0]["0008103E"]["vr"]) |
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1503 self.assertEqual('http://%s:%s%s' % (args.server, args.rest, '/%s/bulk/0008103e' % URI), |
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1504 b[0]["0008103E"]["BulkDataURI"]) |
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1505 |
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1506 c = DoGet(ORTHANC, '%s/bulk/0008103e' % URI) |
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1507 self.assertTrue('Content-Length: 2\r\n' in c) |
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1508 index = c.find('\r\n\r\n') |
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1509 self.assertEqual(0x42, ord(c[index + 4])) |
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1510 self.assertEqual(0x00, ord(c[index + 5])) |
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1511 |
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1512 # Case of an empty value, fails in Orthanc <= 1.9.2 because of issue #195 |
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1513 self.assertEqual(1, len(b[0]["00081030"])) |
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1514 self.assertEqual("UN", b[0]["00081030"]["vr"]) |
|
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1515 |
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1516 |
|
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1517 try: |
|
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1518 print('\nStarting the tests...') |
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1519 unittest.main(argv = [ sys.argv[0] ] + args.options) |
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1520 |
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1521 finally: |
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1522 print('\nDone') |