Mercurial > hg > orthanc-tests
annotate Plugins/Worklists/Run.py @ 511:933fe1bbce4f
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author | Sebastien Jodogne <s.jodogne@gmail.com> |
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date | Sat, 25 Mar 2023 12:30:14 +0100 |
parents | 06eea14c5906 |
children | 6546ca088276 |
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1 #!/usr/bin/python |
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2 # -*- coding: utf-8 -*- |
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3 |
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4 |
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5 # Orthanc - A Lightweight, RESTful DICOM Store |
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6 # Copyright (C) 2012-2016 Sebastien Jodogne, Medical Physics |
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7 # Department, University Hospital of Liege, Belgium |
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8 # Copyright (C) 2017-2023 Osimis S.A., Belgium |
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9 # Copyright (C) 2021-2023 Sebastien Jodogne, ICTEAM UCLouvain, Belgium |
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10 # |
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11 # This program is free software: you can redistribute it and/or |
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12 # modify it under the terms of the GNU General Public License as |
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13 # published by the Free Software Foundation, either version 3 of the |
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14 # License, or (at your option) any later version. |
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15 # |
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16 # This program is distributed in the hope that it will be useful, but |
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17 # WITHOUT ANY WARRANTY; without even the implied warranty of |
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18 # MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU |
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19 # General Public License for more details. |
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20 # |
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21 # You should have received a copy of the GNU General Public License |
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22 # along with this program. If not, see <http://www.gnu.org/licenses/>. |
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23 |
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24 |
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25 import argparse |
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26 import os |
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27 import pprint |
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28 import re |
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29 import subprocess |
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30 import sys |
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31 import tempfile |
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32 import unittest |
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33 from shutil import copyfile |
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34 |
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35 sys.path.append(os.path.join(os.path.dirname(__file__), '..', '..', 'Tests')) |
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36 from Toolbox import * |
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37 |
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38 |
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39 ## |
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40 ## Parse the command-line arguments |
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41 ## |
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42 |
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43 parser = argparse.ArgumentParser(description = 'Run the integration tests for the DICOM worklist plugin.') |
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44 |
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45 parser.add_argument('--server', |
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46 default = 'localhost', |
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47 help = 'Address of the Orthanc server to test') |
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48 parser.add_argument('--rest', |
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49 type = int, |
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50 default = 8042, |
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51 help = 'Port to the REST API') |
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52 parser.add_argument('--username', |
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53 default = 'alice', |
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54 help = 'Username to the REST API') |
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55 parser.add_argument('--password', |
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56 default = 'orthanctest', |
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57 help = 'Password to the REST API') |
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58 parser.add_argument('--dicom', |
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59 type = int, |
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60 default = 4242, |
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61 help = 'DICOM port of the Orthanc instance to test') |
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62 parser.add_argument('options', metavar = 'N', nargs = '*', |
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63 help='Arguments to Python unittest') |
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64 |
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65 args = parser.parse_args() |
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66 |
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67 |
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68 |
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69 ORTHANC = DefineOrthanc(server = args.server, |
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70 username = args.username, |
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71 password = args.password, |
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72 restPort = args.rest) |
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73 |
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74 |
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75 |
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76 ## |
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77 ## Toolbox |
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78 ## |
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79 |
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80 DATABASE = os.path.abspath(os.path.normpath(os.path.join(os.path.dirname(__file__), '..', '..', 'Database', 'Worklists'))) |
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81 WORKING = os.path.join(DATABASE, 'Working') |
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82 |
108 | 83 print('Database directory: %s' % DATABASE) |
84 print('Working directory: %s' % WORKING) | |
85 | |
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86 try: |
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87 os.mkdir(WORKING) |
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88 except Exception as e: |
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89 # The working folder has already been created |
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90 pass |
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91 |
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92 def ClearDatabase(): |
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93 for f in os.listdir(WORKING): |
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94 if f != 'lockfile': |
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95 os.remove(os.path.join(WORKING, f)) |
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96 |
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97 def AddToDatabase(worklist): |
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98 extension = os.path.splitext(worklist)[1].lower() |
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99 source = os.path.join(DATABASE, worklist) |
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100 target = os.path.join(WORKING, os.path.basename(worklist) + '.wl') |
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101 |
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102 if extension == '.dump': |
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103 subprocess.check_call([ 'dump2dcm', '--write-xfer-little', source, target ]) |
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104 else: |
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105 copyfile(source, target) |
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106 |
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107 |
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108 def RunQuery(source, ignoreTags): |
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109 with tempfile.NamedTemporaryFile() as f: |
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110 subprocess.check_call([ 'dump2dcm', '--write-xfer-little', |
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111 os.path.join(DATABASE, source), f.name ]) |
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112 |
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113 a = subprocess.check_output([ 'findscu', '-v', '--call', 'ORTHANC', '-aet', 'ORTHANCTEST', |
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114 args.server, str(args.dicom), f.name ], |
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115 stderr = subprocess.STDOUT).splitlines() |
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116 |
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117 if len(filter(lambda x: x.startswith('E:'), a)) > 0: |
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118 raise Exception('Error while running findscu') |
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119 |
108 | 120 b = map(lambda x: x[3:], filter(lambda x: (x.startswith('I: ---') or |
121 x.startswith('W: ---') or | |
122 x.startswith('I: (') or | |
123 x.startswith('W: (')), a)) | |
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124 b = map(lambda x: re.sub(r'\s*#.*', '', x), b) |
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125 |
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126 answers = [] |
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127 current = [] |
108 | 128 isQuery = True |
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129 |
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130 for l in b: |
108 | 131 l = l.replace('\0', '') |
132 | |
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133 if l[0] == '-': |
108 | 134 if isQuery: |
135 isQuery = False | |
136 else: | |
137 # This is a separator between DICOM datasets | |
138 if len(current) > 0: | |
139 answers.append(current) | |
140 current = [] | |
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141 |
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142 else: |
108 | 143 if not isQuery: |
144 tag = l[1:10].lower() | |
145 if not tag in ignoreTags: | |
146 current.append(l) | |
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147 |
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148 if len(current) > 0: |
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149 answers.append(current) |
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150 |
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151 return answers |
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152 |
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153 def CompareAnswers(expected, actual): |
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154 if len(expected) != len(actual): |
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155 return False |
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156 |
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157 if len(expected) == 0: |
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158 return True |
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159 |
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160 for i in range(len(expected)): |
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161 for j in range(len(actual)): |
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162 if expected[i] == actual[j]: |
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163 return True |
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164 |
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165 return False |
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166 |
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167 |
94
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168 def ParseTopLevelTags(answer): |
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169 tags = {} |
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170 for line in answer: |
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171 m = re.match(r'^\(([0-9a-f]{4},[0-9a-f]{4})\)\s*..\s*\[([^]]*)\]', line) |
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172 tags[m.group(1)] = m.group(2).strip() |
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173 |
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174 return tags |
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175 |
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176 |
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177 ## |
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178 ## The tests |
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179 ## |
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180 |
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181 class Orthanc(unittest.TestCase): |
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182 def setUp(self): |
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183 if (sys.version_info >= (3, 0)): |
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184 # Remove annoying warnings about unclosed socket in Python 3 |
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185 import warnings |
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186 warnings.simplefilter("ignore", ResourceWarning) |
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187 |
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188 ClearDatabase() |
174 | 189 DoPost(ORTHANC, '/tools/execute-script', 'function IncomingWorklistRequestFilter(query, origin) return query end', 'application/lua') |
90
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190 |
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191 |
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192 def test_single(self): |
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193 for db in range(1, 11): |
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194 ClearDatabase() |
91 | 195 AddToDatabase('Dcmtk/Database/wklist%d.dump' % db) |
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196 |
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197 for query in range(0, 13): |
91 | 198 answers = RunQuery('Dcmtk/Queries/wlistqry%d.dump' % query, [ |
90
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199 '0008,0005', |
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200 '0040,0004', |
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201 '0040,0005', |
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202 '0040,0020', |
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203 ]) |
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204 |
91 | 205 with open(os.path.join('%s/Dcmtk/Expected/single-%d-%d.json' % (DATABASE, db, query)), 'r') as f: |
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206 expected = json.loads(f.read()) |
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207 self.assertTrue(CompareAnswers(expected, answers)) |
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208 |
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209 |
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210 def test_all(self): |
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211 ClearDatabase() |
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212 |
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213 for db in range(1, 11): |
91 | 214 AddToDatabase('Dcmtk/Database/wklist%d.dump' % db) |
90
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215 |
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216 for query in range(0, 13): |
91 | 217 answers = RunQuery('Dcmtk/Queries/wlistqry%d.dump' % query, [ |
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218 '0008,0005', |
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219 '0040,0004', |
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220 '0040,0005', |
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221 '0040,0020', |
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222 ]) |
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223 |
91 | 224 with open(os.path.join('%s/Dcmtk/Expected/all-%d.json' % (DATABASE, query)), 'r') as f: |
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225 expected = json.loads(f.read()) |
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226 self.assertTrue(CompareAnswers(expected, answers)) |
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227 |
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228 |
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229 def test_vet(self): |
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230 AddToDatabase('Sequences/STATION_AET/orig.7705.dump') |
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231 AddToDatabase('Sequences/STATION_AET/orig.7814.dump') |
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232 AddToDatabase('Sequences/STATION_AET/orig.7814.without.seq.dump') |
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233 |
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234 self.assertEqual(2, len(RunQuery('Sequences/Queries/7814.without.length.dump', []))) |
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235 self.assertEqual(2, len(RunQuery('Sequences/Queries/7814.without.seq.dump', []))) |
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236 self.assertEqual(2, len(RunQuery('Sequences/Queries/orig.7814.dump', []))) |
97 | 237 |
238 | |
98 | 239 @unittest.skip("This test requires to enable option 'FilterIssuerAet' in the sample worklist plugin") |
240 def test_filter_issuer_aet(self): | |
97 | 241 AddToDatabase('Sequences/STATION_AET/orig.7814.dump') |
98 | 242 AddToDatabase('Sequences/STATION_AET/orig.7814.other.station.dump') |
97 | 243 |
98 | 244 self.assertEqual(1, len(RunQuery('Sequences/Queries/7814.without.station.aet.dump', []))) |
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245 |
174 | 246 def test_filter_issuer_aet_from_lua(self): |
247 AddToDatabase('Sequences/STATION_AET/orig.7814.dump') # targeted at STATION_AET | |
248 AddToDatabase('Sequences/STATION_AET/orig.7814.other.station.dump') # targeted at ORTHANC_TEST | |
249 | |
250 self.assertEqual(2, len(RunQuery('Sequences/Queries/7814.without.station.aet.dump', []))) # query is not targeting any station -> match all | |
251 InstallLuaScript(ORTHANC, "\ | |
252 function IncomingWorklistRequestFilter(query, origin)\ | |
253 query['0040,0100'][1]['0040,0001'] = origin['RemoteAet']\ | |
254 return query\ | |
255 end"); | |
256 | |
257 self.assertEqual(1, len(RunQuery('Sequences/Queries/7814.without.station.aet.dump', []))) # now, query is targeting ORTHANCTEST -> match one | |
258 | |
259 | |
260 def test_remove_aet_from_query(self): | |
261 AddToDatabase('Sequences/NO_STATION_AET/orig.7814.other.station.dump') # targeted at ORTHANCTEST | |
262 | |
263 self.assertEqual(0, len(RunQuery('Sequences/Queries/orig.7814.dump', []))) # query is targeting STATION_AET -> will not match | |
264 InstallLuaScript(ORTHANC, "\ | |
265 function IncomingWorklistRequestFilter(query, origin)\ | |
266 query['0040,0100'][1]['0040,0001'] = nil\ | |
267 return query\ | |
268 end"); | |
269 self.assertEqual(1, len(RunQuery('Sequences/Queries/orig.7814.dump', []))) # query is targeting STATION_AET but, since we have removed this field, we should get 2 queries | |
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270 |
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271 def test_encodings(self): |
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272 # Check out ../../Database/Worklists/Encodings/database.dump |
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273 TEST = u'Test-éüäöòДΘĝדصķћ๛ネİ' |
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274 ENCODINGS = { |
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275 'Arabic' : [ 'ISO_IR 127' ], |
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276 'Ascii' : [ 'ISO_IR 6' ], # More accurately, ISO 646 |
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277 'Cyrillic' : [ 'ISO_IR 144' ], |
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278 'Greek' : [ 'ISO_IR 126' ], |
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279 'Hebrew' : [ 'ISO_IR 138' ], |
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280 'Japanese' : [ 'ISO_IR 13', 'shift-jis' ], |
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281 'Latin1' : [ 'ISO_IR 100' ], |
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282 'Latin2' : [ 'ISO_IR 101' ], |
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283 'Latin3' : [ 'ISO_IR 109' ], |
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284 'Latin4' : [ 'ISO_IR 110' ], |
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285 'Latin5' : [ 'ISO_IR 148' ], |
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286 'Thai' : [ 'ISO_IR 166', 'tis-620' ], |
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287 'Utf8' : [ 'ISO_IR 192' ], |
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288 } |
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289 |
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290 AddToDatabase('Encodings/database.dump') |
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291 |
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292 for name, encoding in ENCODINGS.iteritems(): |
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293 self.assertEqual(name, DoPut(ORTHANC, '/tools/default-encoding', name)) |
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294 result = RunQuery('Encodings/query.dump', []) |
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295 |
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296 self.assertEqual(1, len(result)) |
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297 self.assertEqual(2, len(result[0])) |
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298 tags = ParseTopLevelTags(result[0]) |
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299 |
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300 if len(encoding) == 1: |
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301 encoded = TEST.encode(name, 'ignore') |
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302 else: |
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303 encoded = TEST.encode(encoding[1], 'ignore') |
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304 |
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305 self.assertEqual(encoding[0], tags['0008,0005']) |
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306 self.assertEqual(encoded, tags['0010,0010']) |
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307 |
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308 |
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309 def test_bitbucket_issue_49(self): |
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310 def Check(encoding, expectedEncoding, expectedContent): |
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311 DoPut(ORTHANC, '/tools/default-encoding', encoding) |
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312 result = RunQuery('Encodings/issue49-latin1.query', []) |
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313 self.assertEqual(1, len(result)) |
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314 self.assertEqual(2, len(result[0])) |
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315 tags = ParseTopLevelTags(result[0]) |
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316 self.assertEqual(expectedEncoding, tags['0008,0005']) |
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317 self.assertEqual(expectedContent, tags['0010,0010']) |
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318 |
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319 AddToDatabase('Encodings/issue49-latin1.wl') |
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320 Check('Ascii', 'ISO_IR 6', r'VANILL^LAURA^^^Mme') |
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321 Check('Utf8', 'ISO_IR 192', r'VANILLÉ^LAURA^^^Mme') |
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322 Check('Latin1', 'ISO_IR 100', u'VANILLÉ^LAURA^^^Mme'.encode('latin-1', 'ignore')) |
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323 |
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324 |
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325 def test_format(self): |
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326 DoPut(ORTHANC, '/tools/default-encoding', 'Latin1') |
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327 AddToDatabase('Dcmtk/Database/wklist1.dump') |
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328 |
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329 # Only behavior of Orthanc <= 1.9.4 |
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330 a = DoPost(ORTHANC, '/modalities/self/find-worklist', { |
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331 'PatientID' : '' |
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332 }) |
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333 self.assertEqual(1, len(a)) |
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334 self.assertEqual(2, len(a[0])) |
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335 self.assertEqual('AV35674', a[0]['PatientID']) |
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336 self.assertEqual('ISO_IR 100', a[0]['SpecificCharacterSet']) |
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337 |
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338 a = DoPost(ORTHANC, '/modalities/self/find-worklist', { |
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339 'Query' : { |
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340 'PatientID' : '' |
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341 } |
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342 }) |
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343 self.assertEqual(1, len(a)) |
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344 self.assertEqual(2, len(a[0])) |
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345 self.assertEqual('AV35674', a[0]['PatientID']) |
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346 self.assertEqual('ISO_IR 100', a[0]['SpecificCharacterSet']) |
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347 |
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348 a = DoPost(ORTHANC, '/modalities/self/find-worklist', { |
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349 'Query' : { |
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350 'PatientID' : '' |
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351 }, |
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352 'Short' : True |
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353 }) |
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354 self.assertEqual(1, len(a)) |
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355 self.assertEqual(2, len(a[0])) |
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356 self.assertEqual('AV35674', a[0]['0010,0020']) |
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357 self.assertEqual('ISO_IR 100', a[0]['0008,0005']) |
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358 |
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359 a = DoPost(ORTHANC, '/modalities/self/find-worklist', { |
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360 'Query' : { |
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361 'PatientID' : '' |
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362 }, |
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363 'Full' : True |
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364 }) |
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365 self.assertEqual(1, len(a)) |
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366 self.assertEqual(2, len(a[0])) |
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367 self.assertEqual('AV35674', a[0]['0010,0020']['Value']) |
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368 self.assertEqual('PatientID', a[0]['0010,0020']['Name']) |
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369 self.assertEqual('ISO_IR 100', a[0]['0008,0005']['Value']) |
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370 self.assertEqual('SpecificCharacterSet', a[0]['0008,0005']['Name']) |
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371 |
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372 |
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373 try: |
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374 print('\nStarting the tests...') |
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375 unittest.main(argv = [ sys.argv[0] ] + args.options) |
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376 |
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377 finally: |
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378 print('\nDone') |