Mercurial > hg > orthanc-tests
annotate Plugins/DicomWeb/Run.py @ 543:8722f7f95a38
fix
| author | Alain Mazy <am@osimis.io> |
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| date | Tue, 20 Jun 2023 17:24:56 +0200 |
| parents | ef41b62b456e |
| children | bcd87bf59630 |
| rev | line source |
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1 #!/usr/bin/python |
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2 # -*- coding: utf-8 -*- |
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3 |
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4 |
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5 # Orthanc - A Lightweight, RESTful DICOM Store |
| 73 | 6 # Copyright (C) 2012-2016 Sebastien Jodogne, Medical Physics |
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7 # Department, University Hospital of Liege, Belgium |
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8 # Copyright (C) 2017-2023 Osimis S.A., Belgium |
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9 # Copyright (C) 2021-2023 Sebastien Jodogne, ICTEAM UCLouvain, Belgium |
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10 # |
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11 # This program is free software: you can redistribute it and/or |
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12 # modify it under the terms of the GNU General Public License as |
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13 # published by the Free Software Foundation, either version 3 of the |
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14 # License, or (at your option) any later version. |
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15 # |
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16 # This program is distributed in the hope that it will be useful, but |
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17 # WITHOUT ANY WARRANTY; without even the implied warranty of |
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18 # MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU |
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19 # General Public License for more details. |
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20 # |
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21 # You should have received a copy of the GNU General Public License |
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22 # along with this program. If not, see <http://www.gnu.org/licenses/>. |
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23 |
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24 |
| 85 | 25 |
| 26 # You must add the following to the configuration file: | |
| 27 # | |
| 28 # "DicomWeb" : { | |
| 29 # "Servers" : { | |
| 30 # "sample" : [ "http://localhost:8042/dicom-web/", "alice", "orthanctest" ] | |
| 31 # } | |
| 32 # } | |
| 33 | |
| 34 | |
| 35 | |
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36 import copy |
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37 import os |
| 33 | 38 import pprint |
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39 import sys |
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40 import argparse |
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41 import unittest |
| 83 | 42 import re |
| 304 | 43 from PIL import ImageChops |
| 44 | |
| 33 | 45 from DicomWeb import * |
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46 |
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47 sys.path.append(os.path.join(os.path.dirname(__file__), '..', '..', 'Tests')) |
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48 from Toolbox import * |
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49 |
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50 |
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51 ## |
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52 ## Parse the command-line arguments |
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53 ## |
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54 |
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55 parser = argparse.ArgumentParser(description = 'Run the integration tests for the DICOMweb plugin.') |
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56 |
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57 parser.add_argument('--server', |
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58 default = 'localhost', |
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59 help = 'Address of the Orthanc server to test') |
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60 parser.add_argument('--rest', |
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61 type = int, |
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62 default = 8042, |
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63 help = 'Port to the REST API') |
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64 parser.add_argument('--username', |
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65 default = 'alice', |
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66 help = 'Username to the REST API') |
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67 parser.add_argument('--password', |
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68 default = 'orthanctest', |
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69 help = 'Password to the REST API') |
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70 parser.add_argument('--wado', |
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71 default = '/wado', |
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72 help = 'Path to the WADO API') |
| 33 | 73 parser.add_argument('--dicomweb', |
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74 default = '/dicom-web/', |
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75 help = 'Path to the DICOMweb API') |
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76 parser.add_argument('--force', help = 'Do not warn the user', |
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77 action = 'store_true') |
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78 parser.add_argument('options', metavar = 'N', nargs = '*', |
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79 help='Arguments to Python unittest') |
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80 |
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81 args = parser.parse_args() |
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82 |
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83 |
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84 ## |
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85 ## Configure the testing context |
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86 ## |
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87 |
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88 if not args.force: |
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89 print(""" |
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90 WARNING: This test will remove all the content of your |
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91 Orthanc instance running on %s! |
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92 |
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93 Are you sure ["yes" to go on]?""" % args.server) |
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94 |
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95 if sys.stdin.readline().strip() != 'yes': |
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96 print('Aborting...') |
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97 exit(0) |
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98 |
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99 |
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100 ORTHANC = DefineOrthanc(server = args.server, |
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101 username = args.username, |
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102 password = args.password, |
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103 restPort = args.rest) |
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104 |
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105 |
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106 ## |
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107 ## The tests |
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108 ## |
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109 |
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110 |
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111 def UploadAndGetWadoPath(dicom): |
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112 i = UploadInstance(ORTHANC, dicom) ['ID'] |
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113 study = DoGet(ORTHANC, '/instances/%s/tags?simplify' % i) ['StudyInstanceUID'] |
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114 series = DoGet(ORTHANC, '/instances/%s/tags?simplify' % i) ['SeriesInstanceUID'] |
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115 instance = DoGet(ORTHANC, '/instances/%s/tags?simplify' % i) ['SOPInstanceUID'] |
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116 return '/studies/%s/series/%s/instances/%s' % (study, series, instance) |
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117 |
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118 |
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119 |
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120 class Orthanc(unittest.TestCase): |
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121 def setUp(self): |
| 83 | 122 if (sys.version_info >= (3, 0)): |
| 123 # Remove annoying warnings about unclosed socket in Python 3 | |
| 124 import warnings | |
| 125 warnings.simplefilter("ignore", ResourceWarning) | |
| 126 | |
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127 #print("In test: ", self._testMethodName) |
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128 |
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129 DropOrthanc(ORTHANC) |
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130 |
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131 def test_wado_dicom(self): |
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132 UploadInstance(ORTHANC, 'Brainix/Flair/IM-0001-0001.dcm') |
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133 |
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134 SIZE = 169478 |
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135 INSTANCE = '1.3.46.670589.11.0.0.11.4.2.0.8743.5.5396.2006120114314079549' |
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136 SERIES = '1.3.46.670589.11.0.0.11.4.2.0.8743.5.5396.2006120114285654497' |
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137 STUDY = '2.16.840.1.113669.632.20.1211.10000357775' |
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138 |
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139 self.assertRaises(Exception, lambda: DoGet(ORTHANC, args.wado)) |
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140 self.assertRaises(Exception, lambda: DoGet(ORTHANC, args.wado + '?requestType=WADO')) |
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141 self.assertRaises(Exception, lambda: DoGet(ORTHANC, args.wado + '?objectUID=%s' % INSTANCE)) |
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142 |
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143 dicom = DoGet(ORTHANC, args.wado + '?contentType=application/dicom&requestType=WADO&objectUID=%s' % INSTANCE) |
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144 self.assertEqual(SIZE, len(dicom)) |
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145 |
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146 dicom = DoGet(ORTHANC, args.wado + '?contentType=application/dicom&requestType=WADO&objectUID=%s&seriesUID=%s' % (INSTANCE, SERIES)) |
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147 self.assertEqual(SIZE, len(dicom)) |
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148 |
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149 dicom = DoGet(ORTHANC, args.wado + '?contentType=application/dicom&requestType=WADO&objectUID=%s&seriesUID=%s&studyUID=%s' % (INSTANCE, SERIES, STUDY)) |
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150 self.assertEqual(SIZE, len(dicom)) |
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151 |
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152 dicom = DoGet(ORTHANC, args.wado + '?contentType=application/dicom&requestType=WADO&objectUID=%s&seriesUID=%s' % (INSTANCE, SERIES)) |
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153 self.assertEqual(SIZE, len(dicom)) |
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154 |
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155 dicom = DoGet(ORTHANC, args.wado + '?contentType=application/dicom&requestType=WADO&objectUID=%s&studyUID=%s' % (INSTANCE, STUDY)) |
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156 self.assertEqual(SIZE, len(dicom)) |
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157 |
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158 self.assertRaises(Exception, lambda: DoGet(ORTHANC, args.wado + '?requestType=WADO&objectUID=%s&seriesUID=nope' % INSTANCE)) |
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159 self.assertRaises(Exception, lambda: DoGet(ORTHANC, args.wado + '?requestType=WADO&objectUID=%s&studyUID=nope' % INSTANCE)) |
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160 self.assertRaises(Exception, lambda: DoGet(ORTHANC, args.wado + '?requestType=WADO&objectUID=%s&seriesUID=nope&studyUID=nope' % INSTANCE)) |
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161 |
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162 def test_wado_image(self): |
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163 UploadInstance(ORTHANC, 'Phenix/IM-0001-0001.dcm') |
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164 INSTANCE = '1.2.840.113704.7.1.1.6632.1127829031.2' |
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165 |
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166 im = GetImage(ORTHANC, args.wado + '?requestType=WADO&objectUID=%s' % INSTANCE) |
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167 self.assertEqual('JPEG', im.format) |
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168 self.assertEqual('L', im.mode) |
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169 self.assertEqual(512, im.size[0]) |
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170 self.assertEqual(358, im.size[1]) |
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171 |
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172 im = GetImage(ORTHANC, args.wado + '?contentType=image/jpg&requestType=WADO&objectUID=%s' % INSTANCE) |
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173 self.assertEqual('JPEG', im.format) |
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174 |
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175 im = GetImage(ORTHANC, args.wado + '?contentType=image/png&requestType=WADO&objectUID=%s' % INSTANCE) |
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176 self.assertEqual('PNG', im.format) |
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177 self.assertEqual('L', im.mode) |
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178 self.assertEqual(512, im.size[0]) |
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179 self.assertEqual(358, im.size[1]) |
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180 |
| 33 | 181 def test_stow(self): |
| 182 self.assertEqual(0, len(DoGet(ORTHANC, '/instances'))) | |
| 183 SendStow(ORTHANC, args.dicomweb + '/studies', GetDatabasePath('Phenix/IM-0001-0001.dcm')) | |
| 184 self.assertEqual(1, len(DoGet(ORTHANC, '/instances'))) | |
| 185 a = SendStow(ORTHANC, args.dicomweb + '/studies', GetDatabasePath('Phenix/IM-0001-0001.dcm')) | |
| 186 self.assertEqual(1, len(DoGet(ORTHANC, '/instances'))) | |
| 187 | |
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188 self.assertEqual(4, len(a)) |
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189 |
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190 # Specific character set |
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191 self.assertTrue('00080005' in a) |
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192 self.assertEqual('CS', a['00080005']['vr']) |
| 33 | 193 |
| 194 self.assertTrue(a['00081190']['Value'][0].endswith('studies/2.16.840.1.113669.632.20.1211.10000098591')) | |
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195 self.assertEqual('UR', a['00081190']['vr']) |
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196 |
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197 self.assertFalse('Value' in a['00081198']) # No error => empty sequence |
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198 self.assertEqual('SQ', a['00081198']['vr']) |
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199 |
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200 self.assertEqual(1, len(a['00081199']['Value'])) # 1 success |
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201 self.assertEqual('SQ', a['00081199']['vr']) |
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202 |
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203 b = a['00081199']['Value'][0] |
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204 |
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205 # Referenced SOP class UID |
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206 self.assertEqual('UI', b['00081150']['vr']) |
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207 self.assertEqual(1, len(b['00081150']['Value'])) |
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208 self.assertEqual('1.2.840.10008.5.1.4.1.1.2', b['00081150']['Value'][0]) |
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209 |
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210 # Referenced SOP instance UID |
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211 self.assertEqual('UI', b['00081155']['vr']) |
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212 self.assertEqual(1, len(b['00081155']['Value'])) |
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213 self.assertEqual('1.2.840.113704.7.1.1.6632.1127829031.2', b['00081155']['Value'][0]) |
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214 |
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215 # Retrieve URL |
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216 self.assertEqual('UR', b['00081190']['vr']) |
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217 self.assertEqual(1, len(b['00081190']['Value'])) |
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218 self.assertTrue(b['00081190']['Value'][0]. |
| 33 | 219 endswith('series/1.2.840.113704.1.111.5692.1127828999.2/instances/1.2.840.113704.7.1.1.6632.1127829031.2')) |
| 220 | |
| 83 | 221 # Remove the "http://localhost:8042" prefix |
| 222 url = a['00081190']['Value'][0] | |
| 223 url = re.sub(r'(http|https)://[^/]+(/.*)', r'\2', url) | |
| 224 | |
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225 # Get the content-length of all the multiparts of this WADO-RS |
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226 # request (prevent transcoding by setting transfer-syntax to |
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227 # "*", necessary since release 1.5 of the DICOMweb plugin) |
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228 b = DoGet(ORTHANC, url, headers = { |
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229 'Accept' : 'multipart/related;type=application/dicom;transfer-syntax=*' |
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230 }).decode('utf-8', 'ignore') |
| 83 | 231 parts = re.findall(r'^Content-Length:\s*(\d+)\s*', b, re.IGNORECASE | re.MULTILINE) |
| 232 self.assertEqual(1, len(parts)) | |
| 233 self.assertEqual(os.path.getsize(GetDatabasePath('Phenix/IM-0001-0001.dcm')), int(parts[0])) | |
| 33 | 234 |
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235 |
| 84 | 236 def test_server_get(self): |
| 277 | 237 try: |
| 238 DoDelete(ORTHANC, '/dicom-web/servers/google') # If "AllWindowsStart.sh" is used | |
| 239 except: | |
| 240 pass | |
| 241 | |
|
388
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242 try: |
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243 DoDelete(ORTHANC, '/dicom-web/servers/hello') # If "test_add_server" fails |
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244 except: |
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245 pass |
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246 |
| 84 | 247 UploadInstance(ORTHANC, 'Knee/T1/IM-0001-0001.dcm') |
| 248 | |
| 249 self.assertEqual(1, len(DoGet(ORTHANC, '/dicom-web/servers'))) | |
| 250 self.assertTrue('sample' in DoGet(ORTHANC, '/dicom-web/servers')) | |
| 251 | |
| 129 | 252 serversReadback = DoGet(ORTHANC, '/dicom-web/servers?expand') |
| 253 self.assertEqual('http://localhost:8042/dicom-web/', serversReadback['sample']['Url']) | |
| 254 self.assertEqual('alice', serversReadback['sample']['Username']) | |
| 255 | |
| 84 | 256 sample = DoGet(ORTHANC, '/dicom-web/servers/sample') |
| 244 | 257 self.assertEqual(5, len(sample)) |
| 84 | 258 self.assertTrue('stow' in sample) |
| 259 self.assertTrue('retrieve' in sample) | |
| 260 self.assertTrue('get' in sample) | |
| 244 | 261 self.assertTrue('wado' in sample) # New in 0.7 |
| 262 self.assertTrue('qido' in sample) # New in 0.7 | |
| 84 | 263 |
| 264 # application/dicom+xml | |
|
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265 self.assertEqual(2, len(re.findall('^--', DoGet(ORTHANC, '/dicom-web/studies', |
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266 headers = { 'Accept' : 'application/dicom+xml' }), |
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267 re.MULTILINE))) |
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268 self.assertEqual(2, len(re.findall('^--', DoPost |
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269 (ORTHANC, '/dicom-web/servers/sample/get', |
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270 { 'Uri' : '/studies', |
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271 'HttpHeaders' : { 'Accept' : 'application/dicom+xml' } |
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272 }), re.MULTILINE))) |
| 84 | 273 |
| 274 # application/dicom+json | |
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275 self.assertEqual(1, len(DoGet(ORTHANC, '/dicom-web/studies', |
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276 headers = { 'Accept' : 'application/dicom+json' }))) |
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277 self.assertEqual(1, len(DoPost(ORTHANC, '/dicom-web/servers/sample/get', |
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278 { 'Uri' : '/studies', |
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279 'HttpHeaders' : { 'Accept' : 'application/dicom+json' }}))) |
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280 |
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281 # application/json |
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282 self.assertEqual(1, len(DoGet(ORTHANC, '/dicom-web/studies', |
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283 headers = { 'Accept' : 'application/json' }))) |
| 84 | 284 self.assertEqual(1, len(DoPost(ORTHANC, '/dicom-web/servers/sample/get', |
| 285 { 'Uri' : '/studies', | |
| 286 'HttpHeaders' : { 'Accept' : 'application/json' }}))) | |
| 287 | |
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288 # application/dicom+json is the default as of OrthancDicomWeb-0.5 |
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289 self.assertEqual(1, len(DoGet(ORTHANC, '/dicom-web/studies'))) |
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290 self.assertEqual(1, len(DoPost(ORTHANC, '/dicom-web/servers/sample/get', |
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291 { 'Uri' : '/studies' }))) |
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292 |
| 84 | 293 |
| 294 def test_server_stow(self): | |
| 295 UploadInstance(ORTHANC, 'Knee/T1/IM-0001-0001.dcm') | |
| 296 | |
| 297 self.assertRaises(Exception, lambda: | |
| 298 DoPost(ORTHANC, '/dicom-web/servers/sample/stow', | |
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299 { 'Resources' : [ 'nope' ], |
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300 'Synchronous' : True })) # inexisting resource |
| 84 | 301 |
| 499 | 302 l = 3 # For >= 1.10.1 |
| 303 | |
| 304 # study | |
| 305 r = DoPost(ORTHANC, '/dicom-web/servers/sample/stow', | |
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306 { 'Resources' : [ '0a9b3153-2512774b-2d9580de-1fc3dcf6-3bd83918' ], |
| 499 | 307 'Synchronous' : True }) |
| 308 | |
| 309 self.assertEqual(l, len(r)) | |
| 310 self.assertEqual("0a9b3153-2512774b-2d9580de-1fc3dcf6-3bd83918", r['Resources']['Studies'][0]) | |
| 84 | 311 |
| 499 | 312 # series |
| 313 r = DoPost(ORTHANC, '/dicom-web/servers/sample/stow', | |
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314 { 'Resources' : [ '6de73705-c4e65c1b-9d9ea1b5-cabcd8e7-f15e4285' ], |
| 499 | 315 'Synchronous' : True }) |
| 316 self.assertEqual(l, len(r)) | |
| 317 self.assertEqual("6de73705-c4e65c1b-9d9ea1b5-cabcd8e7-f15e4285", r['Resources']['Series'][0]) | |
| 84 | 318 |
| 499 | 319 # instances |
| 320 r = DoPost(ORTHANC, '/dicom-web/servers/sample/stow', | |
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321 { 'Resources' : [ 'c8df6478-d7794217-0f11c293-a41237c9-31d98357' ], |
| 499 | 322 'Synchronous' : True }) |
| 323 self.assertEqual(l, len(r)) | |
| 324 self.assertEqual("c8df6478-d7794217-0f11c293-a41237c9-31d98357", r['Resources']['Instances'][0]) | |
| 84 | 325 |
| 499 | 326 # altogether |
| 327 r = DoPost(ORTHANC, '/dicom-web/servers/sample/stow', | |
| 84 | 328 { 'Resources' : [ |
| 329 'ca29faea-b6a0e17f-067743a1-8b778011-a48b2a17', | |
| 330 '0a9b3153-2512774b-2d9580de-1fc3dcf6-3bd83918', | |
| 331 '6de73705-c4e65c1b-9d9ea1b5-cabcd8e7-f15e4285', | |
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332 'c8df6478-d7794217-0f11c293-a41237c9-31d98357' ], |
| 499 | 333 'Synchronous' : True }) |
| 510 | 334 # pprint.pprint(r) |
| 499 | 335 self.assertEqual(l, len(r)) |
| 336 self.assertEqual("ca29faea-b6a0e17f-067743a1-8b778011-a48b2a17", r['Resources']['Patients'][0]) | |
| 337 self.assertEqual("0a9b3153-2512774b-2d9580de-1fc3dcf6-3bd83918", r['Resources']['Studies'][0]) | |
| 338 self.assertEqual("6de73705-c4e65c1b-9d9ea1b5-cabcd8e7-f15e4285", r['Resources']['Series'][0]) | |
| 339 self.assertEqual("c8df6478-d7794217-0f11c293-a41237c9-31d98357", r['Resources']['Instances'][0]) | |
| 340 | |
| 84 | 341 |
| 342 | |
| 343 def test_server_retrieve(self): | |
| 244 | 344 COUNT = 'ReceivedInstancesCount' |
| 345 #COUNT = 'Instances' # In version <= 0.6 | |
| 346 | |
| 84 | 347 UploadInstance(ORTHANC, 'Knee/T1/IM-0001-0001.dcm') |
| 348 UploadInstance(ORTHANC, 'Knee/T1/IM-0001-0002.dcm') | |
| 349 UploadInstance(ORTHANC, 'Knee/T2/IM-0001-0001.dcm') | |
| 350 | |
| 351 self.assertRaises(Exception, lambda: | |
| 352 DoPost(ORTHANC, '/dicom-web/servers/sample/retrieve', | |
| 353 { 'Resources' : [ { 'Study' : 'nope' } ]})) # inexisting resource | |
| 354 | |
| 355 t = DoPost(ORTHANC, '/dicom-web/servers/sample/retrieve', | |
| 356 { 'Resources' : [ { 'Study' : '2.16.840.1.113669.632.20.121711.10000160881' } ] }) | |
| 244 | 357 self.assertEqual(3, int(t[COUNT])) |
| 84 | 358 |
| 359 # Missing "Study" field | |
| 360 self.assertRaises(Exception, lambda: | |
| 361 DoPost(ORTHANC, '/dicom-web/servers/sample/retrieve', | |
| 362 { 'Resources' : [ { 'Series' : '1.3.46.670589.11.17521.5.0.3124.2008081908564160709' } ]})) | |
| 363 | |
| 364 t = DoPost(ORTHANC, '/dicom-web/servers/sample/retrieve', | |
| 365 { 'Resources' : [ { 'Study' : '2.16.840.1.113669.632.20.121711.10000160881', | |
| 366 'Series' : '1.3.46.670589.11.17521.5.0.3124.2008081908564160709' } ] }) | |
| 244 | 367 self.assertEqual(2, int(t[COUNT])) |
| 84 | 368 |
| 369 t = DoPost(ORTHANC, '/dicom-web/servers/sample/retrieve', | |
| 370 { 'Resources' : [ { 'Study' : '2.16.840.1.113669.632.20.121711.10000160881', | |
| 371 'Series' : '1.3.46.670589.11.17521.5.0.3124.2008081909090037350' } ] }) | |
| 244 | 372 self.assertEqual(1, int(t[COUNT])) |
| 84 | 373 |
| 374 t = DoPost(ORTHANC, '/dicom-web/servers/sample/retrieve', | |
| 375 { 'Resources' : [ { 'Study' : '2.16.840.1.113669.632.20.121711.10000160881', | |
| 376 'Series' : '1.3.46.670589.11.17521.5.0.3124.2008081909090037350' }, | |
| 377 { 'Study' : '2.16.840.1.113669.632.20.121711.10000160881', | |
| 378 'Series' : '1.3.46.670589.11.17521.5.0.3124.2008081908564160709' } ] }) | |
| 244 | 379 self.assertEqual(3, int(t[COUNT])) |
| 84 | 380 |
| 381 t = DoPost(ORTHANC, '/dicom-web/servers/sample/retrieve', | |
| 382 { 'Resources' : [ { 'Study' : '2.16.840.1.113669.632.20.121711.10000160881', | |
| 383 'Series' : '1.3.46.670589.11.17521.5.0.3124.2008081909090037350', | |
| 384 'Instance' : '1.3.46.670589.11.17521.5.0.3124.2008081909113806560' } ] }) | |
| 244 | 385 self.assertEqual(1, int(t[COUNT])) |
| 84 | 386 |
| 387 | |
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388 def test_bitbucket_issue_53(self): |
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389 # DICOMWeb plugin support for "limit" and "offset" parameters in QIDO-RS |
| 319 | 390 # https://bugs.orthanc-server.com/show_bug.cgi?id=53 |
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391 |
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392 UploadInstance(ORTHANC, 'Brainix/Flair/IM-0001-0001.dcm') |
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393 UploadInstance(ORTHANC, 'Knee/T1/IM-0001-0001.dcm') |
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394 |
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395 brainix = '2.16.840.1.113669.632.20.1211.10000357775' |
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396 knee = '2.16.840.1.113669.632.20.121711.10000160881' |
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397 |
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398 a = DoGet(ORTHANC, '/dicom-web/studies', |
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399 headers = { 'accept' : 'application/json' }) |
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400 self.assertEqual(2, len(a)) |
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401 |
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402 b = [] |
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403 a = DoGet(ORTHANC, '/dicom-web/studies?limit=1', |
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404 headers = { 'accept' : 'application/json' }) |
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405 self.assertEqual(1, len(a)) |
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406 b.append(a[0]['0020000D']['Value'][0]) |
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407 |
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408 a = DoGet(ORTHANC, '/dicom-web/studies?limit=1&offset=1', |
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409 headers = { 'accept' : 'application/json' }) |
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410 self.assertEqual(1, len(a)) |
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411 b.append(a[0]['0020000D']['Value'][0]) |
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412 |
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413 self.assertTrue(brainix in b) |
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414 self.assertTrue(knee in b) |
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415 |
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416 |
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417 def test_bitbucket_issue_111(self): |
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418 # Wrong serialization of empty values |
| 319 | 419 # https://bugs.orthanc-server.com/show_bug.cgi?id=111 |
| 420 # https://bitbucket.org/sjodogne/orthanc-dicomweb/issues/3 | |
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421 |
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422 # According to the standard, section F.2.5 |
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423 # (http://dicom.nema.org/medical/dicom/current/output/chtml/part18/sect_F.2.5.html), |
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424 # null values behave as follows: If an attribute is present in |
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425 # DICOM but empty (i.e., Value Length is 0), it shall be |
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426 # preserved in the DICOM JSON attribute object containing no |
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427 # "Value", "BulkDataURI" or "InlineBinary". |
| 319 | 428 # https://bugs.orthanc-server.com/show_bug.cgi?id=111 |
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429 |
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430 UploadInstance(ORTHANC, 'Issue111.dcm') |
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431 |
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432 # Test WADO-RS |
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433 a = DoGet(ORTHANC, '/dicom-web/studies/1.2.276.0.7230010.3.1.2.8323329.30185.1551199973.371589/metadata') |
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434 self.assertEqual(1, len(a)) |
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435 self.assertTrue('00080050' in a[0]) # AccessionNumber is null |
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436 self.assertEqual(1, len(a[0]['00080050'])) # 'vr' is the only field to be present |
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437 self.assertEqual('SH', a[0]['00080050']['vr']) |
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438 |
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439 # Test QIDO-RS |
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440 a = DoGet(ORTHANC, '/dicom-web/studies') |
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441 self.assertEqual(1, len(a)) |
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442 self.assertTrue('00080050' in a[0]) # AccessionNumber is null |
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443 self.assertEqual(1, len(a[0]['00080050'])) # 'vr' is the only field to be present |
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444 self.assertEqual('SH', a[0]['00080050']['vr']) |
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445 |
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446 |
| 537 | 447 # this test fails if SeriesMetadata = "MainDicomTags" (this is expected since the reference json is the full json) |
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448 def test_wado_hierarchy(self): |
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449 def CheckJson(uri, headers = {}): |
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450 with open(GetDatabasePath('DummyCT.json'), 'r') as f: |
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451 expected = json.loads(f.read()) |
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452 actual = DoGet(ORTHANC, uri, headers) |
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453 self.assertEqual(1, len(actual)) |
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454 AssertAlmostEqualRecursive(self, expected, actual[0]) |
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455 |
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456 UploadInstance(ORTHANC, 'DummyCT.dcm') |
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457 study = '1.2.840.113619.2.176.2025.1499492.7391.1171285944.390' |
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458 series = '1.2.840.113619.2.176.2025.1499492.7391.1171285944.394' |
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459 instance = '1.2.840.113619.2.176.2025.1499492.7040.1171286242.109' |
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460 |
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461 URI = '/dicom-web/studies/%s/series/%s/instances/%s/metadata' |
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462 self.assertRaises(Exception, lambda: DoGet(ORTHANC, URI % (study, series, instance), |
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463 headers = { 'accept' : 'application/nope' })) |
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464 |
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465 CheckJson(URI % (study, series, instance), headers = { 'accept' : 'application/dicom+json' }) |
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466 CheckJson('/dicom-web/studies/%s/series/%s/metadata' % (study, series)) |
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467 CheckJson('/dicom-web/studies/%s/metadata' % study) |
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468 |
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469 self.assertRaises(Exception, lambda: DoGet(ORTHANC, URI % ('nope', series, instance))) |
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470 self.assertRaises(Exception, lambda: DoGet(ORTHANC, URI % (study, 'nope', instance))) |
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471 self.assertRaises(Exception, lambda: DoGet(ORTHANC, URI % (study, series, 'nope'))) |
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472 self.assertRaises(Exception, lambda: DoGet(ORTHANC, '/dicom-web/studies/%s/series/%s/metadata' % ('nope', series))) |
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473 self.assertRaises(Exception, lambda: DoGet(ORTHANC, '/dicom-web/studies/%s/series/%s/metadata' % (study, 'nope'))) |
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474 self.assertRaises(Exception, lambda: DoGet(ORTHANC, '/dicom-web/studies/%s/metadata' % 'nope')) |
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475 |
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476 |
| 228 | 477 def test_wado_pixel_data(self): |
| 478 orthanc = UploadInstance(ORTHANC, 'Issue29.dcm') ['ID'] | |
| 479 a = DoGet(ORTHANC, '/dicom-web/instances') | |
| 480 self.assertEqual(1, len(a)) | |
| 481 url = a[0]['00081190']['Value'][0] | |
| 482 | |
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483 prefix = 'http://%s:%s' % (args.server, args.rest) |
| 228 | 484 self.assertTrue(url.startswith(prefix)) |
| 485 | |
| 486 b = DoGet(ORTHANC, url[len(prefix):] + '/metadata') | |
| 487 self.assertEqual('OB', b[0]['7FE00010']['vr']) | |
| 488 self.assertEqual(2, len(b[0]['7FE00010'])) | |
| 489 self.assertTrue('BulkDataURI' in b[0]['7FE00010']) | |
| 490 | |
| 491 url = b[0]['7FE00010']['BulkDataURI'] | |
| 492 self.assertTrue(url.startswith(prefix)) | |
| 493 | |
| 494 p = DoGetMultipart(ORTHANC, url[len(prefix):]) | |
| 495 | |
| 496 self.assertEqual(2, len(p)) # There are 2 fragments in this image | |
| 497 self.assertEqual(4, len(p[0])) | |
| 498 self.assertEqual(114486, len(p[1])) | |
| 499 | |
| 500 | |
| 501 def test_wado_hierarchy_bulk(self): | |
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502 def CheckBulk(value, bulk): |
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503 self.assertEqual(2, len(value)) |
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504 self.assertTrue('BulkDataURI' in value) |
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505 self.assertTrue('vr' in value) |
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506 self.assertEqual(value['BulkDataURI'], bulk) |
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507 |
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508 orthanc = UploadInstance(ORTHANC, 'PrivateTags.dcm') ['ID'] |
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509 study = '1.2.840.113619.2.115.147416.1094281639.0.29' |
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510 series = '1.2.840.113619.2.115.147416.1094281639.0.30' |
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511 sop = '1.2.840.113619.2.115.147416.1094281639.0.38' |
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512 |
| 228 | 513 # WARNING: This test will fail on Orthanc <= 1.5.5, because |
| 319 | 514 # the following fix was not included yet: |
| 515 # https://hg.orthanc-server.com/orthanc/rev/b88937ef597b | |
| 228 | 516 |
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517 a = DoGet(ORTHANC, '/dicom-web/studies/%s/metadata' % study) |
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518 self.assertEqual(1, len(a)) |
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519 |
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520 BASE_URI = '/dicom-web/studies/%s/series/%s/instances/%s/bulk' % (study, series, sop) |
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521 BASE_URL = 'http://%s:%s%s' % (args.server, args.rest, BASE_URI) |
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522 |
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523 self.assertEqual(2, len(a[0]['60031010']['Value'])) |
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524 CheckBulk(a[0]['60031010']['Value'][0]['60031011'], '%s/60031010/1/60031011' % BASE_URL) |
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525 CheckBulk(a[0]['60031010']['Value'][1]['60031011'], '%s/60031010/2/60031011' % BASE_URL) |
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526 CheckBulk(a[0]['7FE00010'], '%s/7fe00010' % BASE_URL) |
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527 |
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528 b = DoGetRaw(ORTHANC, '/instances/%s/content/6003-1010/0/6003-1011' % orthanc) [1] |
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529 c = DoGetMultipart(ORTHANC, '%s/60031010/1/60031011' % BASE_URI) |
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530 |
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531 self.assertEqual(12288, len(b)) |
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532 self.assertEqual(1, len(c)) |
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533 self.assertEqual(b, c[0]) |
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534 |
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535 |
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536 def test_bitbucket_issue_112(self): |
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537 # Wrong serialization of number values |
| 319 | 538 # https://bugs.orthanc-server.com/show_bug.cgi?id=112 |
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539 # https://bitbucket.org/sjodogne/orthanc-dicomweb/issues/4/ |
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540 |
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541 UploadInstance(ORTHANC, 'DummyCT.dcm') |
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542 study = '1.2.840.113619.2.176.2025.1499492.7391.1171285944.390' |
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543 |
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544 # This is the WADO-RS testing |
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545 a = DoGet(ORTHANC, '/dicom-web/studies/%s/metadata' % study) |
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546 self.assertEqual(1, len(a)) |
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547 self.assertEqual('IS', a[0]['00180091']['vr']) # EchoTrainLength |
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548 |
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549 if (sys.version_info >= (3, 0)): |
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550 types = (int) |
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551 else: |
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552 types = (int, long) |
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553 |
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554 b = a[0]['00180091']['Value'][0] |
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555 self.assertTrue(isinstance(b, types)) |
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556 self.assertEqual(10, b) |
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557 |
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558 # This is the QIDO-RS testing |
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559 a = DoGet(ORTHANC, '/dicom-web/studies') |
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560 self.assertEqual(1, len(a)) |
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561 self.assertEqual('IS', a[0]['00201208']['vr']) # Number of Study Related Instances |
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562 |
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563 b = a[0]['00201208']['Value'][0] |
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564 self.assertTrue(isinstance(b, types)) |
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565 self.assertEqual(1, b) |
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566 |
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567 |
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568 def test_bitbucket_issue_113(self): |
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569 # Wrong serialization of PN VR |
| 319 | 570 # https://bugs.orthanc-server.com/show_bug.cgi?id=113 |
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571 # https://bitbucket.org/sjodogne/orthanc-dicomweb/issues/2/ |
| 314 | 572 |
| 573 # Make sure UTF-8 encoding is used | |
| 574 self.assertEqual('Utf8', DoPut(ORTHANC, '/tools/default-encoding', 'Utf8')) | |
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575 |
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576 UploadInstance(ORTHANC, 'Encodings/DavidClunie/SCSX1') |
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577 study = '1.3.6.1.4.1.5962.1.2.0.1175775771.5711.0' |
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578 |
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579 # This is the WADO-RS testing |
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580 a = DoGet(ORTHANC, '/dicom-web/studies/%s/metadata' % study) |
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581 self.assertEqual(1, len(a)) |
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582 |
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583 pn = a[0]['00100010'] # Patient name |
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584 self.assertEqual('PN', pn['vr']) |
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585 self.assertEqual(1, len(pn['Value'])) |
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586 self.assertEqual('Wang^XiaoDong', pn['Value'][0]['Alphabetic']) |
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587 self.assertEqual(u'王^小東', pn['Value'][0]['Ideographic']) |
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588 |
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589 # This is the QIDO-RS testing |
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590 a = DoGet(ORTHANC, '/dicom-web/studies') |
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591 self.assertEqual(1, len(a)) |
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592 |
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593 pn = a[0]['00100010'] # Patient name |
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594 self.assertEqual('PN', pn['vr']) |
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595 self.assertEqual(1, len(pn['Value'])) |
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596 self.assertEqual('Wang^XiaoDong', pn['Value'][0]['Alphabetic']) |
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597 self.assertEqual(u'王^小東', pn['Value'][0]['Ideographic']) |
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598 |
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599 |
| 225 | 600 def test_bitbucket_issue_96(self): |
| 601 # WADO-RS RetrieveFrames rejects valid accept headers | |
| 319 | 602 # https://bugs.orthanc-server.com/show_bug.cgi?id=96 |
| 225 | 603 # https://bitbucket.org/sjodogne/orthanc-dicomweb/issues/5/ |
| 604 | |
| 228 | 605 UploadInstance(ORTHANC, 'Brainix/Epi/IM-0001-0001.dcm') |
| 225 | 606 |
| 607 a = DoGet(ORTHANC, '/dicom-web/instances') | |
| 608 self.assertEqual(1, len(a)) | |
| 228 | 609 self.assertEqual(256, a[0]['00280010']['Value'][0]) # Rows |
| 610 self.assertEqual(256, a[0]['00280011']['Value'][0]) # Columns | |
| 611 self.assertEqual(16, a[0]['00280100']['Value'][0]) # Bits allocated | |
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612 |
| 225 | 613 url = a[0]['00081190']['Value'][0] |
| 614 | |
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615 prefix = 'http://%s:%s' % (args.server, args.rest) |
| 225 | 616 self.assertTrue(url.startswith(prefix)) |
| 617 uri = url[len(prefix):] | |
| 618 | |
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619 self.assertRaises(Exception, lambda: DoGetMultipart(ORTHANC, '%s/frames/%d' % (uri, 0))) |
| 228 | 620 self.assertRaises(Exception, lambda: DoGetMultipart(ORTHANC, '%s/frames/%d' % (uri, 2))) |
| 621 | |
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622 b = DoGetMultipart(ORTHANC, '%s/frames/%d' % (uri, 1)) |
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623 self.assertEqual(1, len(b)) |
| 228 | 624 self.assertEqual(256 * 256 * 2, len(b[0])) |
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625 self.assertEqual('ce394eb4d4de4eeef348436108101f3b', ComputeMD5(b[0])) |
| 225 | 626 |
| 228 | 627 c = DoGetMultipart(ORTHANC, '%s/frames/%d' % (uri, 1), |
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628 headers = { 'Accept' : 'multipart/related; type=application/octet-stream' }) |
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629 self.assertEqual(1, len(c)) |
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630 self.assertEqual(b[0], c[0]) |
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631 self.assertEqual('ce394eb4d4de4eeef348436108101f3b', ComputeMD5(c[0])) |
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632 |
| 228 | 633 c = DoGetMultipart(ORTHANC, '%s/frames/%d' % (uri, 1), |
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634 headers = { 'Accept' : 'multipart/related; type="application/octet-stream"' }) |
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635 self.assertEqual(1, len(c)) |
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636 self.assertEqual(b[0], c[0]) |
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637 self.assertEqual('ce394eb4d4de4eeef348436108101f3b', ComputeMD5(c[0])) |
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638 |
| 228 | 639 self.assertRaises(Exception, lambda: DoGetMultipart(ORTHANC, '%s/frames/%d' % (uri, 1), |
| 640 headers = { 'Accept' : 'multipart/related; type="nope"' })) | |
| 641 | |
| 642 self.assertRaises(Exception, lambda: DoGetMultipart(ORTHANC, '%s/frames/%d' % (uri, 1), | |
| 643 headers = { 'Accept' : 'multipart/related; type=nope' })) | |
| 644 | |
| 645 self.assertRaises(Exception, lambda: DoGetMultipart(ORTHANC, '%s/frames/%d' % (uri, 1), | |
| 646 headers = { 'Accept' : 'nope' })) | |
| 647 | |
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648 |
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649 def test_qido_fields(self): |
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650 UploadInstance(ORTHANC, 'DummyCT.dcm') |
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651 |
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652 a = DoGet(ORTHANC, '/dicom-web/studies') |
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653 self.assertEqual(1, len(a)) |
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654 self.assertFalse('00280010' in a[0]) # Rows |
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655 |
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656 a = DoGet(ORTHANC, '/dicom-web/studies?includefield=Rows') |
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657 self.assertEqual(1, len(a)) |
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658 self.assertTrue('00280010' in a[0]) |
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659 self.assertEqual(512, a[0]['00280010']['Value'][0]) |
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660 |
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661 a = DoGet(ORTHANC, '/dicom-web/studies?Rows=128') |
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662 self.assertEqual(0, len(a)) |
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663 |
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664 a = DoGet(ORTHANC, '/dicom-web/studies?Rows=512') |
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665 self.assertEqual(1, len(a)) |
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666 self.assertTrue('00280010' in a[0]) |
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667 self.assertEqual(512, a[0]['00280010']['Value'][0]) |
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668 |
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669 |
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670 def test_stow_errors(self): |
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671 def CheckSequences(a): |
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672 self.assertEqual(3, len(a)) |
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673 self.assertTrue('00080005' in a) |
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674 self.assertTrue('00081198' in a) |
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675 self.assertTrue('00081199' in a) |
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676 self.assertEqual('CS', a['00080005']['vr']) |
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677 self.assertEqual('SQ', a['00081198']['vr']) |
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678 self.assertEqual('SQ', a['00081199']['vr']) |
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679 |
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680 # Pushing an instance to a study that is not its parent |
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681 (status, a) = SendStowRaw(ORTHANC, args.dicomweb + '/studies/nope', GetDatabasePath('Phenix/IM-0001-0001.dcm')) |
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682 self.assertEqual(409, status) |
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683 CheckSequences(a) |
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684 |
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685 self.assertFalse('Value' in a['00081199']) # No success instance |
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686 |
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687 self.assertEqual(1, len(a['00081198']['Value'])) # One failed instance |
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688 self.assertEqual('1.2.840.10008.5.1.4.1.1.2', |
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689 a['00081198']['Value'][0]['00081150']['Value'][0]) |
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690 self.assertEqual('1.2.840.113704.7.1.1.6632.1127829031.2', |
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691 a['00081198']['Value'][0]['00081155']['Value'][0]) |
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692 self.assertEqual(0x0110, # Processing failure |
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693 a['00081198']['Value'][0]['00081197']['Value'][0]) |
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694 |
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695 # Pushing an instance with missing tags |
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696 (status, a) = SendStowRaw(ORTHANC, args.dicomweb + '/studies', GetDatabasePath('Issue111.dcm')) |
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697 self.assertEqual(400, status) |
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698 CheckSequences(a) |
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699 |
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700 self.assertFalse('Value' in a['00081198']) # No failed instance, as tags are missing |
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701 self.assertFalse('Value' in a['00081199']) # No success instance |
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702 |
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703 # Pushing a file that is not in the DICOM format |
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704 (status, a) = SendStowRaw(ORTHANC, args.dicomweb + '/studies', GetDatabasePath('Issue111.dump')) |
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705 self.assertEqual(400, status) |
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706 CheckSequences(a) |
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707 |
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708 self.assertFalse('Value' in a['00081198']) # No failed instance, as non-DICOM |
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709 self.assertFalse('Value' in a['00081199']) # No success instance |
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710 |
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711 # Pushing a DICOM instance with only SOP class and instance UID |
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712 (status, a) = SendStowRaw(ORTHANC, args.dicomweb + '/studies', GetDatabasePath('Issue196.dcm')) |
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713 self.assertEqual(400, status) |
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714 CheckSequences(a) |
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715 |
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716 self.assertFalse('Value' in a['00081199']) # No success instance |
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|
717 |
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718 self.assertEqual(1, len(a['00081198']['Value'])) # One failed instance |
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719 self.assertEqual('1.2.840.10008.5.1.4.1.1.4', |
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720 a['00081198']['Value'][0]['00081150']['Value'][0]) |
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721 self.assertEqual('1.2.840.113619.2.176.2025.1499492.7040.1171286242.109', |
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722 a['00081198']['Value'][0]['00081155']['Value'][0]) |
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723 self.assertEqual(0xC000, # Error: Cannot understand (cannot understand certain Data Elements) |
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724 a['00081198']['Value'][0]['00081197']['Value'][0]) |
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725 |
|
239
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726 |
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727 def test_allowed_methods(self): |
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728 self.assertEqual(0, len(DoGet(ORTHANC, '/dicom-web/studies'))) |
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729 |
|
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730 with self.assertRaises(Exception) as e: |
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731 DoPut(ORTHANC, '/dicom-web/studies') |
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732 |
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733 self.assertEqual(405, e.exception[0]) |
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734 self.assertEqual("GET,POST", e.exception[1]['allow']) |
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735 |
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736 with self.assertRaises(Exception) as e: |
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737 DoDelete(ORTHANC, '/dicom-web/studies') |
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738 |
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739 self.assertEqual(405, e.exception[0]) |
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740 self.assertEqual("GET,POST", e.exception[1]['allow']) |
|
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741 |
|
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742 |
|
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743 def test_add_server(self): |
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744 try: |
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745 DoDelete(ORTHANC, '/dicom-web/servers/hello') |
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746 except: |
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747 pass |
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748 |
| 277 | 749 try: |
| 750 DoDelete(ORTHANC, '/dicom-web/servers/google') # If "AllWindowsStart.sh" is used | |
| 751 except: | |
| 752 pass | |
| 753 | |
|
241
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754 l = DoGet(ORTHANC, '/dicom-web/servers') |
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755 self.assertEqual(1, len(l)) |
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756 self.assertTrue('sample' in l) |
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757 |
|
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758 url = 'http://localhost:8042/dicom-web/' |
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759 DoPut(ORTHANC, '/dicom-web/servers/hello', { |
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760 'Url': url, |
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761 'HttpHeaders' : { |
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762 'Hello' : 'World' |
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763 }, |
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764 'Username' : 'bob', |
| 242 | 765 'Password' : 'password', |
| 766 'UserProperty' : 'Test', | |
|
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767 'HasDelete' : True, |
|
381
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768 'Timeout' : 66 # New in 1.6 |
|
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769 }) |
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770 |
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771 l = DoGet(ORTHANC, '/dicom-web/servers') |
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772 self.assertEqual(2, len(l)) |
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773 self.assertTrue('sample' in l) |
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774 self.assertTrue('hello' in l) |
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775 |
|
249
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776 o = DoGet(ORTHANC, '/dicom-web/servers/sample') |
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777 self.assertEqual(5, len(o)) |
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778 self.assertTrue('stow' in o) |
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779 self.assertTrue('retrieve' in o) |
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780 self.assertTrue('get' in o) |
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781 self.assertTrue('wado' in o) # New in 0.7 |
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782 self.assertTrue('qido' in o) # New in 0.7 |
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783 |
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784 o = DoGet(ORTHANC, '/dicom-web/servers/hello') |
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785 self.assertEqual(6, len(o)) |
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786 self.assertTrue('stow' in o) |
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787 self.assertTrue('retrieve' in o) |
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788 self.assertTrue('get' in o) |
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789 self.assertTrue('wado' in o) # New in 0.7 |
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790 self.assertTrue('qido' in o) # New in 0.7 |
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791 self.assertTrue('delete' in o) # New in 0.7 |
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792 |
|
241
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793 s = DoGet(ORTHANC, '/dicom-web/servers?expand') |
|
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794 self.assertEqual(8, len(s['hello'])) |
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795 self.assertEqual(url, s['hello']['Url']) |
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796 self.assertEqual('bob', s['hello']['Username']) |
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797 self.assertEqual(None, s['hello']['Password']) |
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798 self.assertFalse(s['hello']['Pkcs11']) |
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799 self.assertEqual(1, len(s['hello']['HttpHeaders'])) |
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800 self.assertTrue('Hello' in s['hello']['HttpHeaders']) |
| 242 | 801 self.assertEqual('Test', s['hello']['UserProperty']) |
|
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802 self.assertEqual('1', s['hello']['HasDelete']) |
|
388
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803 self.assertEqual(66, s['hello']['Timeout']) # New in 1.6 (interpreted as a string in <= 1.5) |
|
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804 |
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805 DoDelete(ORTHANC, '/dicom-web/servers/hello') |
|
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|
806 |
|
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807 |
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808 def test_bitbucket_issue_143(self): |
|
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809 # WADO-RS metadata request returns "500 Internal Server Error" |
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810 # instead of "404 Not Found" for missing instance |
| 319 | 811 # https://bugs.orthanc-server.com/show_bug.cgi?id=143 |
|
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812 UploadInstance(ORTHANC, 'Issue143.dcm') |
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813 |
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814 try: |
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815 DoGet(ORTHANC, '/dicom-web/studies/1.2.840.113619.2.55.3.671756986.106.1316467036.460/series/1.2.840.113619.2.55.3.671756986.106.1316467036.465/instances/0.0.0.0.0/metadata') |
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816 self.assertFail() |
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817 except Exception as e: |
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818 self.assertEqual(404, e[0]) |
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819 |
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820 DoGet(ORTHANC, '/dicom-web/studies/1.3.6.1.4.1.34261.90254037371867.41912.1553085024.2/series/1.3.6.1.4.1.34261.90254037371867.41912.1553085024.3/instances/1.2.276.0.7230010.3.1.4.253549293.36648.1555586123.754/metadata') |
|
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821 |
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822 try: |
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823 DoGet(ORTHANC, '/dicom-web/studies/0.0.0.0.0/series/1.3.6.1.4.1.34261.90254037371867.41912.1553085024.3/instances/1.2.276.0.7230010.3.1.4.253549293.36648.1555586123.754/metadata') |
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824 self.fail() |
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825 except Exception as e: |
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826 self.assertEqual(404, e[0]) |
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827 |
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828 try: |
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829 DoGet(ORTHANC, '/dicom-web/studies/1.3.6.1.4.1.34261.90254037371867.41912.1553085024.2/series/0.0.0.0.0/instances/1.2.276.0.7230010.3.1.4.253549293.36648.1555586123.754/metadata') |
|
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830 self.assertFail() |
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831 except Exception as e: |
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832 self.assertEqual(404, e[0]) |
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833 |
|
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834 try: |
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835 DoGet(ORTHANC, '/dicom-web/studies/0.0.0.0.0/series/0.0.0.0.0/instances/0.0.0.0.0/metadata') |
|
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836 self.assertFail() |
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837 except Exception as e: |
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838 self.assertEqual(404, e[0]) |
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839 |
|
248
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840 |
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841 def test_encodings_qido(self): |
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842 # The "DefaultEncoding" condifuration option is set to "UTF8" |
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843 # in the integration tests, so all the QIDO-RS requests must |
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844 # lead to a "ISO_IR 192" specific character set |
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845 def GetPatientName(dicom, onlyAlphabetic): |
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846 i = UploadInstance(ORTHANC, dicom) ['ID'] |
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847 j = DoGet(ORTHANC, '/instances/%s/tags?simplify' % i) ['StudyInstanceUID'] |
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848 qido = DoGet(ORTHANC, '/dicom-web/studies?0020000D=%s' % j) |
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849 self.assertEqual(1, len(qido)) |
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850 self.assertEqual('CS', qido[0]['00080005']['vr']) |
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851 self.assertEqual('ISO_IR 192', qido[0]['00080005']['Value'][0]) |
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852 if onlyAlphabetic: |
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853 self.assertEqual(1, len(qido[0]['00100010']['Value'][0])) |
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854 else: |
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855 self.assertEqual(3, len(qido[0]['00100010']['Value'][0])) |
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856 return qido[0]['00100010']['Value'][0] |
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857 |
| 314 | 858 # Make sure UTF-8 encoding is used |
| 859 self.assertEqual('Utf8', DoPut(ORTHANC, '/tools/default-encoding', 'Utf8')) | |
| 860 | |
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861 # Check out "test_issue_95_encodings" in "../../Tests/Tests.py" |
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862 |
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863 self.assertEqual(u'Buc^Jérôme', GetPatientName('Encodings/DavidClunie/SCSFREN', True) ['Alphabetic']) |
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864 self.assertEqual(u'Äneas^Rüdiger', GetPatientName('Encodings/DavidClunie/SCSGERM', True)['Alphabetic']) |
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865 self.assertEqual(u'Διονυσιος', GetPatientName('Encodings/DavidClunie/SCSGREEK', True)['Alphabetic']) |
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866 self.assertEqual(u'Люкceмбypг', GetPatientName('Encodings/DavidClunie/SCSRUSS', True)['Alphabetic']) |
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867 self.assertEqual(u'שרון^דבורה', GetPatientName('Encodings/DavidClunie/SCSHBRW', True)['Alphabetic']) |
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868 self.assertEqual(u'قباني^لنزار', GetPatientName('Encodings/DavidClunie/SCSARAB', True)['Alphabetic']) |
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869 |
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870 self.assertEqual(u'Hong^Gildong', GetPatientName('Encodings/DavidClunie/SCSI2', False)['Alphabetic']) |
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871 self.assertEqual(u'洪^吉洞', GetPatientName('Encodings/DavidClunie/SCSI2', False)['Ideographic']) |
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872 self.assertEqual(u'홍^길동', GetPatientName('Encodings/DavidClunie/SCSI2', False)['Phonetic']) |
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873 self.assertEqual(u'Wang^XiaoDong', GetPatientName('Encodings/DavidClunie/SCSX2', False)['Alphabetic']) |
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874 self.assertEqual(u'王^小东', GetPatientName('Encodings/DavidClunie/SCSX2', False)['Ideographic']) |
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875 self.assertEqual(u'', GetPatientName('Encodings/DavidClunie/SCSX2', False)['Phonetic']) |
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876 self.assertEqual(u'Wang^XiaoDong', GetPatientName('Encodings/DavidClunie/SCSX1', False)['Alphabetic']) |
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877 self.assertEqual(u'王^小東', GetPatientName('Encodings/DavidClunie/SCSX1', False)['Ideographic']) |
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878 self.assertEqual(u'', GetPatientName('Encodings/DavidClunie/SCSX1', False)['Phonetic']) |
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879 self.assertEqual(u'Yamada^Tarou', GetPatientName('Encodings/DavidClunie/SCSH31', False)['Alphabetic']) |
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880 self.assertEqual(u'山田^太郎', GetPatientName('Encodings/DavidClunie/SCSH31', False)['Ideographic']) |
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881 self.assertEqual(u'やまだ^たろう', GetPatientName('Encodings/DavidClunie/SCSH31', False)['Phonetic']) |
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882 self.assertEqual(u'ﾔﾏﾀﾞ^ﾀﾛｳ', GetPatientName('Encodings/DavidClunie/SCSH32', False)['Alphabetic']) |
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883 |
|
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884 # TODO - Not supported yet by the Orthanc core as of 1.5.7 |
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885 #self.assertEqual(u'山田^太郎', GetPatientName('Encodings/DavidClunie/SCSH32')['Ideographic']) |
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886 #self.assertEqual(u'やまだ^たろう', GetPatientName('Encodings/DavidClunie/SCSH32')['Phonetic']) |
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887 |
|
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888 |
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889 def test_encodings_wado_metadata(self): |
|
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890 # If querying the instance metadata, the "DefaultEncoding" |
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891 # configuration is not used, but the actual encoding |
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892 def GetEncoding(dicom, length): |
|
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893 qido = DoGet(ORTHANC, '/dicom-web/%s/metadata' % UploadAndGetWadoPath(dicom)) |
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894 self.assertEqual(1, len(qido)) |
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895 self.assertEqual(length, len(qido[0]['00080005']['Value'])) |
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896 self.assertEqual('CS', qido[0]['00080005']['vr']) |
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897 return qido[0]['00080005']['Value'] |
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898 |
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899 self.assertEqual('ISO_IR 100', GetEncoding('Encodings/DavidClunie/SCSFREN', 1)[0]) |
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900 self.assertEqual('ISO_IR 100', GetEncoding('Encodings/DavidClunie/SCSGERM', 1)[0]) |
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901 self.assertEqual('ISO_IR 126', GetEncoding('Encodings/DavidClunie/SCSGREEK', 1)[0]) |
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902 self.assertEqual('ISO_IR 144', GetEncoding('Encodings/DavidClunie/SCSRUSS', 1)[0]) |
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903 self.assertEqual('ISO_IR 138', GetEncoding('Encodings/DavidClunie/SCSHBRW', 1)[0]) |
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904 self.assertEqual('ISO_IR 127', GetEncoding('Encodings/DavidClunie/SCSARAB', 1)[0]) |
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905 self.assertEqual('ISO 2022 IR 149', GetEncoding('Encodings/DavidClunie/SCSI2', 1)[0]) |
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906 self.assertEqual('GB18030', GetEncoding('Encodings/DavidClunie/SCSX2', 1)[0]) |
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907 self.assertEqual('ISO_IR 192', GetEncoding('Encodings/DavidClunie/SCSX1', 1)[0]) |
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908 self.assertEqual('ISO 2022 IR 87', GetEncoding('Encodings/DavidClunie/SCSH31', 1)[0]) |
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909 self.assertEqual('ISO 2022 IR 13', GetEncoding('Encodings/DavidClunie/SCSH32', 2)[0]) |
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910 self.assertEqual('ISO 2022 IR 87', GetEncoding('Encodings/DavidClunie/SCSH32', 2)[1]) |
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|
911 |
|
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|
912 |
|
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|
913 def test_rendered(self): |
|
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|
914 def RenderFrame(path, i): |
|
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915 return DoPost(ORTHANC, '/dicom-web/servers/sample/get', { |
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916 'Uri' : '%s/frames/%d/rendered' % (path, i) |
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917 }) |
|
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|
918 |
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|
919 # This image has 76 frames |
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920 path = UploadAndGetWadoPath('Multiframe.dcm') |
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921 |
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922 self.assertRaises(Exception, lambda: RenderFrame(path, 0)) |
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923 |
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924 frame1 = RenderFrame(path, 1) |
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925 im = UncompressImage(frame1) |
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926 self.assertEqual("L", im.mode) |
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927 self.assertEqual(512, im.size[0]) |
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928 self.assertEqual(512, im.size[1]) |
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929 |
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930 im = UncompressImage(RenderFrame(path, 76)) |
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931 self.assertEqual("L", im.mode) |
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932 self.assertEqual(512, im.size[0]) |
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933 self.assertEqual(512, im.size[1]) |
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|
934 |
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935 self.assertRaises(Exception, lambda: RenderFrame(path, 77)) |
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936 |
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937 defaultFrame = DoPost(ORTHANC, '/dicom-web/servers/sample/get', { |
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938 'Uri' : '%s/rendered' % path |
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939 }) |
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|
940 |
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941 self.assertEqual(len(frame1), len(defaultFrame)) |
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942 self.assertEqual(frame1, defaultFrame) |
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943 |
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944 |
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945 # This image has 1 frame |
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946 path = UploadAndGetWadoPath('Phenix/IM-0001-0001.dcm') |
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947 |
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948 self.assertRaises(Exception, lambda: RenderFrame(path, 0)) |
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949 self.assertRaises(Exception, lambda: RenderFrame(path, 2)) |
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950 |
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951 frame1 = RenderFrame(path, 1) |
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952 im = UncompressImage(frame1) |
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953 self.assertEqual("L", im.mode) |
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954 self.assertEqual(512, im.size[0]) |
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955 self.assertEqual(358, im.size[1]) |
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956 |
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957 defaultFrame = DoPost(ORTHANC, '/dicom-web/servers/sample/get', { |
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958 'Uri' : '%s/rendered' % path |
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|
959 }) |
|
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diff
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|
960 |
|
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|
961 self.assertEqual(len(frame1), len(defaultFrame)) |
|
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|
962 self.assertEqual(frame1, defaultFrame) |
|
259
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diff
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|
963 |
|
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diff
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|
964 |
|
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|
965 def test_qido_parent_attributes(self): |
|
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|
966 UploadInstance(ORTHANC, 'Brainix/Flair/IM-0001-0001.dcm') |
|
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diff
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|
967 study = '2.16.840.1.113669.632.20.1211.10000357775' |
|
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|
968 series = '1.3.46.670589.11.0.0.11.4.2.0.8743.5.5396.2006120114285654497' |
|
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diff
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|
969 instance = '1.3.46.670589.11.0.0.11.4.2.0.8743.5.5396.2006120114314079549' |
|
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diff
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|
970 |
|
298f80c6ccc4
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|
971 a = DoGet(ORTHANC, '/dicom-web/studies') |
|
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|
972 self.assertEqual(1, len(a)) |
|
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changeset
|
973 self.assertFalse('00080018' in a[0]) # SOPInstanceUID |
|
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|
974 self.assertFalse('0020000E' in a[0]) # SeriesInstanceUID |
|
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|
975 self.assertEqual(study, a[0]['0020000D']['Value'][0]) |
|
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976 self.assertEqual('BRAINIX', a[0]['00100010']['Value'][0]['Alphabetic']) |
|
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|
977 |
|
298f80c6ccc4
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diff
changeset
|
978 a = DoGet(ORTHANC, '/dicom-web/studies?0020000D=%s' % study) |
|
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|
979 self.assertEqual(1, len(a)) |
|
298f80c6ccc4
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|
980 self.assertFalse('00080018' in a[0]) # SOPInstanceUID |
|
298f80c6ccc4
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parents:
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diff
changeset
|
981 self.assertFalse('0020000E' in a[0]) # SeriesInstanceUID |
|
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|
982 self.assertEqual(study, a[0]['0020000D']['Value'][0]) |
|
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test_qido_parent_attributes
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|
983 self.assertEqual('BRAINIX', a[0]['00100010']['Value'][0]['Alphabetic']) |
|
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diff
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|
984 |
|
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diff
changeset
|
985 a = DoGet(ORTHANC, '/dicom-web/series') |
|
298f80c6ccc4
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|
986 self.assertEqual(1, len(a)) |
|
298f80c6ccc4
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changeset
|
987 self.assertFalse('00080018' in a[0]) |
|
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|
988 self.assertEqual(study, a[0]['0020000D']['Value'][0]) |
|
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|
989 self.assertEqual(series, a[0]['0020000E']['Value'][0]) |
|
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parents:
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diff
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|
990 self.assertEqual('MR', a[0]['00080060']['Value'][0]) |
|
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diff
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|
991 self.assertEqual('BRAINIX', a[0]['00100010']['Value'][0]['Alphabetic']) |
|
298f80c6ccc4
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parents:
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diff
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|
992 |
|
298f80c6ccc4
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parents:
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diff
changeset
|
993 a = DoGet(ORTHANC, '/dicom-web/instances') |
|
298f80c6ccc4
test_qido_parent_attributes
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parents:
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diff
changeset
|
994 self.assertEqual(1, len(a)) |
|
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|
995 self.assertEqual(study, a[0]['0020000D']['Value'][0]) |
|
298f80c6ccc4
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|
996 self.assertEqual(series, a[0]['0020000E']['Value'][0]) |
|
298f80c6ccc4
test_qido_parent_attributes
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diff
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|
997 self.assertEqual(instance, a[0]['00080018']['Value'][0]) |
|
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diff
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|
998 self.assertEqual('MR', a[0]['00080060']['Value'][0]) |
|
298f80c6ccc4
test_qido_parent_attributes
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diff
changeset
|
999 self.assertEqual('BRAINIX', a[0]['00100010']['Value'][0]['Alphabetic']) |
|
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diff
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|
1000 |
|
298f80c6ccc4
test_qido_parent_attributes
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parents:
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diff
changeset
|
1001 a = DoGet(ORTHANC, '/dicom-web/studies/%s/series' % study) |
|
298f80c6ccc4
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parents:
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|
1002 self.assertEqual(1, len(a)) |
|
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parents:
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diff
changeset
|
1003 self.assertFalse('00080018' in a[0]) |
|
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test_qido_parent_attributes
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|
1004 self.assertEqual(study, a[0]['0020000D']['Value'][0]) |
|
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parents:
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|
1005 self.assertEqual(series, a[0]['0020000E']['Value'][0]) |
|
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1006 self.assertEqual('MR', a[0]['00080060']['Value'][0]) |
|
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|
1007 self.assertEqual('BRAINIX', a[0]['00100010']['Value'][0]['Alphabetic']) |
|
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diff
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|
1008 |
|
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parents:
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diff
changeset
|
1009 a = DoGet(ORTHANC, '/dicom-web/studies/%s/series/%s/instances' % (study, series)) |
|
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|
1010 self.assertEqual(1, len(a)) |
|
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1011 self.assertEqual(study, a[0]['0020000D']['Value'][0]) |
|
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1012 self.assertEqual(series, a[0]['0020000E']['Value'][0]) |
|
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|
1013 self.assertEqual(instance, a[0]['00080018']['Value'][0]) |
|
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changeset
|
1014 self.assertEqual('MR', a[0]['00080060']['Value'][0]) |
|
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changeset
|
1015 self.assertEqual('BRAINIX', a[0]['00100010']['Value'][0]['Alphabetic']) |
|
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changeset
|
1016 |
|
298f80c6ccc4
test_qido_parent_attributes
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parents:
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diff
changeset
|
1017 # "If {StudyInstanceUID} is not specified, all Study-level |
|
298f80c6ccc4
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diff
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|
1018 # attributes specified in Table 6.7.1-2" => Here, |
|
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test_qido_parent_attributes
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parents:
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diff
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|
1019 # {StudyInstanceUID} *is* specified, so we must *not* get the |
|
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diff
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|
1020 # PatientName. |
|
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|
1021 # http://dicom.nema.org/medical/dicom/2019a/output/html/part18.html#table_6.7.1-2a |
|
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diff
changeset
|
1022 a = DoGet(ORTHANC, '/dicom-web/series?0020000D=%s' % study) |
|
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|
1023 self.assertEqual(1, len(a)) |
|
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diff
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|
1024 self.assertFalse('00100010' in a[0]) # PatientName |
|
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|
1025 self.assertEqual(study, a[0]['0020000D']['Value'][0]) |
|
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|
1026 self.assertEqual(series, a[0]['0020000E']['Value'][0]) |
|
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|
1027 self.assertEqual('MR', a[0]['00080060']['Value'][0]) |
|
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|
1028 |
| 487 | 1029 # if we ask explicitely for the Patient and Study tags, we must get it |
| 1030 a = DoGet(ORTHANC, '/dicom-web/series?0020000D=%s&includefield=00100010&includefield=00080020' % study) | |
| 1031 self.assertEqual(1, len(a)) | |
| 1032 self.assertTrue('00100010' in a[0]) # PatientName | |
| 1033 self.assertTrue('00080020' in a[0]) # StudyDate | |
| 1034 | |
| 1035 # if {StudyInstanceUID} *is not* specified, we must get the PatientName | |
| 1036 a = DoGet(ORTHANC, '/dicom-web/series') | |
| 1037 self.assertTrue('00100010' in a[0]) # PatientName | |
| 1038 | |
|
259
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diff
changeset
|
1039 # http://dicom.nema.org/medical/dicom/2019a/output/html/part18.html#table_6.7.1-2b |
|
298f80c6ccc4
test_qido_parent_attributes
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parents:
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diff
changeset
|
1040 a = DoGet(ORTHANC, '/dicom-web/instances?0020000D=%s' % study) |
|
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|
1041 self.assertEqual(1, len(a)) |
|
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parents:
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diff
changeset
|
1042 self.assertFalse('00100010' in a[0]) # PatientName |
|
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|
1043 self.assertEqual(study, a[0]['0020000D']['Value'][0]) |
|
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|
1044 self.assertEqual(series, a[0]['0020000E']['Value'][0]) |
|
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diff
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|
1045 self.assertEqual('MR', a[0]['00080060']['Value'][0]) |
|
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|
1046 |
|
298f80c6ccc4
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diff
changeset
|
1047 a = DoGet(ORTHANC, '/dicom-web/instances?0020000E=%s' % series) |
|
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diff
changeset
|
1048 self.assertEqual(1, len(a)) |
|
298f80c6ccc4
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diff
changeset
|
1049 self.assertFalse('00080060' in a[0]) # Modality |
|
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|
1050 self.assertEqual(study, a[0]['0020000D']['Value'][0]) |
|
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|
1051 self.assertEqual(series, a[0]['0020000E']['Value'][0]) |
|
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diff
changeset
|
1052 self.assertEqual('BRAINIX', a[0]['00100010']['Value'][0]['Alphabetic']) |
|
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diff
changeset
|
1053 |
|
298f80c6ccc4
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diff
changeset
|
1054 a = DoGet(ORTHANC, '/dicom-web/instances?0020000D=%s&0020000E=%s' % (study, series)) |
|
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changeset
|
1055 self.assertEqual(1, len(a)) |
|
298f80c6ccc4
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parents:
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diff
changeset
|
1056 self.assertFalse('00100010' in a[0]) # PatientName |
|
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diff
changeset
|
1057 self.assertFalse('00080060' in a[0]) # Modality |
|
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|
1058 self.assertEqual(study, a[0]['0020000D']['Value'][0]) |
|
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diff
changeset
|
1059 self.assertEqual(series, a[0]['0020000E']['Value'][0]) |
|
261
b8cdb0aef4b9
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parents:
260
diff
changeset
|
1060 |
| 487 | 1061 # if we ask explicitely for the Patient and Study tags, we must get it |
| 1062 a = DoGet(ORTHANC, '/dicom-web/instances?0020000D=%s&includefield=00100010&includefield=00080020' % study) | |
| 1063 self.assertEqual(1, len(a)) | |
| 1064 self.assertTrue('00100010' in a[0]) # PatientName | |
| 1065 self.assertTrue('00080020' in a[0]) # StudyDate | |
| 1066 | |
| 1067 # if {StudyInstanceUID} *is not* specified, we must get all Study, Series and Patient tags | |
| 1068 a = DoGet(ORTHANC, '/dicom-web/instances') | |
| 1069 self.assertTrue('00100010' in a[0]) # PatientName | |
| 1070 self.assertTrue('00080020' in a[0]) # StudyDate | |
| 1071 self.assertTrue('00080060' in a[0]) # Modality | |
| 1072 | |
|
261
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parents:
260
diff
changeset
|
1073 |
|
270
082f35cb4459
test_bitbuck_issue_168
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
261
diff
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1074 #@unittest.skip("Skip this test on GDCM 2.8.4") |
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1075 def test_bitbucket_issue_164(self): |
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1076 # WARNING - This makes GDCM 2.8.4 crash |
| 319 | 1077 # https://bugs.orthanc-server.com/show_bug.cgi?id=164 |
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1078 UploadInstance(ORTHANC, 'Issue164.dcm') |
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1079 |
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1080 p = DoGetMultipart(ORTHANC, 'dicom-web/studies/1.2.276.0.26.1.1.1.2.2020.45.52293.1506048/series/1.2.276.0.26.1.1.1.2.2020.45.52293.6384450/instances/1.2.276.0.26.1.1.1.2.2020.45.52366.2551599.179568640/frames/5') |
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1081 self.assertEqual(1, len(p)) |
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1082 self.assertEqual(743 * 975 * 3, len(p[0])) |
| 304 | 1083 |
|
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1084 metadata = DoGet(ORTHANC, 'dicom-web/studies/1.2.276.0.26.1.1.1.2.2020.45.52293.1506048/series/1.2.276.0.26.1.1.1.2.2020.45.52293.6384450/instances/1.2.276.0.26.1.1.1.2.2020.45.52366.2551599.179568640/metadata') |
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1085 self.assertEqual("YBR_FULL_422", metadata[0]['00280004']['Value'][0]) |
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1086 |
| 543 | 1087 # TODO |
| 1088 # # starting from X.XX.X, Orthanc won't convert YBR to RGB anymore -> new checksum (https://discourse.orthanc-server.org/t/orthanc-convert-ybr-to-rgb-but-does-not-change-metadata/3533) | |
| 1089 # if IsOrthancVersionAbove(ORTHANC, 1, XX, 1): | |
| 1090 # expectedDcmtkChecksum = '7535a11e7da0fa590c467ac9d323c5c1' | |
| 1091 # else: | |
| 1092 expectedDcmtkChecksum = 'b3662c4bfa24a0c73abb08548c63319b' | |
|
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1093 |
| 304 | 1094 if HasGdcmPlugin(ORTHANC): |
| 1095 self.assertTrue(ComputeMD5(p[0]) in [ | |
| 1096 'b952d67da9ff004b0adae3982e89d620', # GDCM >= 3.0 | |
|
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1097 expectedDcmtkChecksum # Fallback to DCMTK |
| 304 | 1098 ]) |
| 1099 else: | |
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1100 self.assertEqual(expectedDcmtkChecksum, ComputeMD5(p[0])) # DCMTK |
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1101 |
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1102 |
| 271 | 1103 def test_bitbucket_issue_168(self): |
| 276 | 1104 # "Plugins can't read private tags from the configuration |
| 1105 # file" This test will fail if DCMTK <= 3.6.1 (e.g. on Ubuntu | |
| 1106 # 16.04), or if Orthanc <= 1.5.8 | |
| 319 | 1107 # https://bugs.orthanc-server.com/show_bug.cgi?id=168 |
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1108 |
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1109 UploadInstance(ORTHANC, 'Issue168.dcm') |
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1110 |
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1111 a = DoGet(ORTHANC, '/dicom-web/studies') |
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1112 self.assertEqual(1, len(a)) |
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1113 self.assertFalse('00090010' in a[0]) |
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1114 self.assertFalse('00091001' in a[0]) |
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1115 self.assertEqual('20170404', a[0]['00080020']['Value'][0]) |
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1116 |
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1117 a = DoGet(ORTHANC, '/dicom-web/studies?includefield=00091001') |
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1118 self.assertEqual(1, len(a)) |
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1119 self.assertFalse('00090010' in a[0]) |
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1120 self.assertTrue('00091001' in a[0]) # This fails if DCMTK <= 3.6.1 |
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1121 self.assertEqual('DS', a[0]['00091001']['vr']) |
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1122 self.assertEqual(1, len(a[0]['00091001']['Value'])) |
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1123 self.assertAlmostEqual(98.41, a[0]['00091001']['Value'][0]) |
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1124 |
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1125 a = DoGet(ORTHANC, '/dicom-web/studies?00090010=Lunit&includefield=00091001') |
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1126 self.assertEqual(1, len(a)) |
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1127 self.assertTrue('00090010' in a[0]) |
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1128 self.assertEqual('LO', a[0]['00090010']['vr']) |
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1129 self.assertEqual(1, len(a[0]['00090010']['Value'])) |
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1130 self.assertEqual('Lunit', a[0]['00090010']['Value'][0]) |
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1131 self.assertTrue('00091001' in a[0]) |
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1132 self.assertEqual('DS', a[0]['00091001']['vr']) |
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1133 self.assertEqual(1, len(a[0]['00091001']['Value'])) |
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1134 self.assertAlmostEqual(98.41, a[0]['00091001']['Value'][0]) |
|
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1135 |
|
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1136 a = DoGet(ORTHANC, '/dicom-web/studies?00090010=Lunit2&includefield=00091001') |
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1137 self.assertEqual(0, len(a)) |
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1138 |
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1139 |
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1140 def test_rendered_studies_series(self): |
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1141 i = UploadInstance(ORTHANC, 'Phenix/IM-0001-0001.dcm') ['ID'] |
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1142 study = DoGet(ORTHANC, '/instances/%s/tags?simplify' % i) ['StudyInstanceUID'] |
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1143 series = DoGet(ORTHANC, '/instances/%s/tags?simplify' % i) ['SeriesInstanceUID'] |
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1144 instance = DoGet(ORTHANC, '/instances/%s/tags?simplify' % i) ['SOPInstanceUID'] |
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1145 |
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1146 a = DoPost(ORTHANC, '/dicom-web/servers/sample/get', { |
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1147 'Uri' : '/studies/%s/series/%s/instances/%s/rendered' % (study, series, instance) |
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1148 }) |
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1149 |
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1150 im = UncompressImage(a) |
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1151 self.assertEqual("L", im.mode) |
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1152 self.assertEqual(512, im.size[0]) |
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1153 self.assertEqual(358, im.size[1]) |
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1154 |
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1155 b = DoPost(ORTHANC, '/dicom-web/servers/sample/get', { |
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1156 'Uri' : '/studies/%s/series/%s/rendered' % (study, series) |
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1157 }) |
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1158 |
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1159 self.assertEqual(len(a), len(b)) |
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1160 self.assertEqual(a, b) |
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1161 |
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1162 c = DoPost(ORTHANC, '/dicom-web/servers/sample/get', { |
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1163 'Uri' : '/studies/%s/rendered' % study |
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1164 }) |
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1165 |
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1166 self.assertEqual(len(a), len(c)) |
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1167 self.assertEqual(a, c) |
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1168 |
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1169 |
|
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1170 def test_multiple_mime_accept_wado_rs(self): |
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1171 # "Multiple MIME type Accept Headers for Wado-RS" |
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1172 # https://groups.google.com/forum/#!msg/orthanc-users/P3B6J9abZpE/syn5dnW2AwAJ |
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1173 |
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1174 UploadInstance(ORTHANC, 'DummyCT.dcm') |
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1175 study = '1.2.840.113619.2.176.2025.1499492.7391.1171285944.390' |
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1176 |
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1177 self.assertEqual(1, len(DoGet(ORTHANC, '/dicom-web/studies/%s/metadata' % study))) |
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1178 |
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1179 self.assertEqual(1, len(DoGet(ORTHANC, '/dicom-web/studies/%s/metadata' % study, |
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1180 headers = { 'Accept' : 'application/json, application/dicom+json' }))) |
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1181 |
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1182 self.assertEqual(1, len(DoGet(ORTHANC, '/dicom-web/studies/%s/metadata' % study, |
| 274 | 1183 headers = { 'Accept' : 'application/json' }))) |
| 1184 | |
| 1185 self.assertEqual(1, len(DoGet(ORTHANC, '/dicom-web/studies/%s/metadata' % study, | |
| 1186 headers = { 'Accept' : 'application/dicom+json' }))) | |
| 1187 | |
| 1188 self.assertEqual(1, len(DoGet(ORTHANC, '/dicom-web/studies/%s/metadata' % study, | |
|
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1189 headers = { 'Accept' : 'toto, application/dicom+json' }))) |
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1191 self.assertEqual(1, len(DoGet(ORTHANC, '/dicom-web/studies/%s/metadata' % study, |
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1192 headers = { 'Accept' : 'application/json, tata' }))) |
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1193 |
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1194 self.assertRaises(Exception, lambda: DoGet(ORTHANC, '/dicom-web/studies/%s/metadata' % study, |
| 274 | 1195 headers = { 'Accept' : 'toto' })) |
| 1196 | |
| 1197 self.assertRaises(Exception, lambda: DoGet(ORTHANC, '/dicom-web/studies/%s/metadata' % study, | |
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1198 headers = { 'Accept' : 'toto, tata' })) |
| 275 | 1199 |
| 1200 # https://groups.google.com/d/msg/orthanc-users/9o5kItsMQI0/Og6B27YyBgAJ | |
| 1201 self.assertEqual(1, len(DoGetMultipart(ORTHANC, '/dicom-web/studies/%s/metadata' % study, | |
| 1202 headers = { 'Accept' : 'multipart/related;type=application/dicom+xml' }))) | |
| 1203 | |
| 1204 self.assertEqual(1, len(DoGet(ORTHANC, '/dicom-web/studies/%s/metadata' % study, | |
| 1205 headers = { 'Accept' : 'application/json, application/dicom+xml' }))) | |
| 1206 | |
| 1207 self.assertEqual(1, len(DoGet(ORTHANC, '/dicom-web/studies/%s/metadata' % study, | |
| 1208 headers = { 'Accept' : 'application/dicom+xml, application/json' }))) | |
|
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1209 |
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1210 |
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1211 |
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1212 def test_bitbucket_issue_56(self): |
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1213 # "Case-insensitive matching over accents" => DICOMweb part |
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1214 # from AlexanderM on 2020-03-20 |
| 319 | 1215 # https://bugs.orthanc-server.com/show_bug.cgi?id=56 |
|
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1216 UploadInstance(ORTHANC, 'Issue56-NoPixelData.dcm') |
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1217 |
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1218 self.assertEqual(1, len(DoPost(ORTHANC, '/tools/find', { |
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1219 'Level' : 'Patient', |
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1220 'Query' : { |
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1221 'PatientName' : 'Гусева*', |
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1222 }, |
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1223 }))) |
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1224 |
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1225 self.assertEqual(1, len(DoPost(ORTHANC, '/tools/find', { |
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1226 'Level' : 'Patient', |
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1227 'Query' : { |
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1228 'PatientName' : 'гусева*', |
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1229 }, |
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1230 }))) |
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1231 |
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1232 self.assertEqual(1, len(DoGet(ORTHANC, u'/dicom-web/studies?PatientName=Гусева*', |
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1233 headers = { 'accept' : 'application/json' }))) |
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1234 |
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1235 # This line is the issue |
|
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1236 self.assertEqual(1, len(DoGet(ORTHANC, u'/dicom-web/studies?PatientName=гусева*', |
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1237 headers = { 'accept' : 'application/json' }))) |
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1238 |
|
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1239 |
|
318
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1240 def test_frames_transcoding(self): |
|
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1241 ACCEPT = { |
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1242 '1.2.840.10008.1.2' : 'multipart/related; type=application/octet-stream; transfer-syntax=1.2.840.10008.1.2', |
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1243 '1.2.840.10008.1.2.1' : 'multipart/related; type=application/octet-stream; transfer-syntax=1.2.840.10008.1.2.1', |
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1244 '1.2.840.10008.1.2.4.50' : 'multipart/related; type=image/jpeg; transfer-syntax=1.2.840.10008.1.2.4.50', |
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1245 '1.2.840.10008.1.2.4.51' : 'multipart/related; type=image/jpeg; transfer-syntax=1.2.840.10008.1.2.4.51', |
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1246 '1.2.840.10008.1.2.4.57' : 'multipart/related; type=image/jpeg; transfer-syntax=1.2.840.10008.1.2.4.57', |
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1247 '1.2.840.10008.1.2.4.70' : 'multipart/related; type=image/jpeg; transfer-syntax=1.2.840.10008.1.2.4.70', |
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1248 } |
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1249 |
|
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1250 uri = 'dicom-web%s' % UploadAndGetWadoPath('TransferSyntaxes/1.2.840.10008.1.2.4.50.dcm') |
|
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1251 truthRGB = Image.open(GetDatabasePath('TransferSyntaxes/1.2.840.10008.1.2.4.50.png')) |
| 543 | 1252 |
| 1253 # TODO | |
| 1254 # # starting from X.XX.X, Orthanc won't convert YBR to RGB anymore -> new checksum (https://discourse.orthanc-server.org/t/orthanc-convert-ybr-to-rgb-but-does-not-change-metadata/3533) | |
| 1255 # with open(GetDatabasePath('TransferSyntaxes/1.2.840.10008.1.2.4.50.YBR.raw'), 'rb') as f: | |
| 1256 # truthRawYbr = f.read() | |
|
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1257 |
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1258 # first test: no transcoding since we accept the JPEG transfer syntax |
|
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1259 a = DoGetMultipart(ORTHANC, '%s/frames/1' % uri, |
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1260 headers = { 'Accept' : ACCEPT['1.2.840.10008.1.2.4.50'] }, |
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1261 returnHeaders = True) |
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1262 self.assertEqual(1, len(a)) |
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1263 self.assertEqual(2, len(a[0])) |
|
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1264 self.assertEqual('%s%s/frames/1' % (ORTHANC['Url'], uri), |
|
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1265 a[0][1]['Content-Location']) |
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1266 self.assertEqual(ACCEPT['1.2.840.10008.1.2.4.50'], |
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1267 'multipart/related; type=%s' % a[0][1]['Content-Type']) |
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1268 self.assertEqual(53476, len(a[0][0])) |
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1269 self.assertEqual('142fdb8a1dc2aa7e6b8952aa294a6e22', ComputeMD5(a[0][0])) |
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1270 |
|
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1271 # second test: no accept header -> defaults to raw explicit |
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1272 a = DoGetMultipart(ORTHANC, '%s/frames/1' % uri) |
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1273 self.assertEqual(1, len(a)) |
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1274 self.assertEqual(480 * 640 * 3, len(a[0])) |
| 304 | 1275 |
|
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1276 # Orthanc is now returning the YBR image instead of the RGB |
| 543 | 1277 # TODO |
| 1278 # # starting from X.XX.X, Orthanc won't convert YBR to RGB anymore -> new checksum (https://discourse.orthanc-server.org/t/orthanc-convert-ybr-to-rgb-but-does-not-change-metadata/3533) | |
| 1279 # if IsOrthancVersionAbove(ORTHANC, 1, XX, 1) and not HasGdcmPlugin(ORTHANC): | |
| 1280 # # GetMaxImageDifference does not work with YBR images -> strict comparison with the output of dcmdjpeg | |
| 1281 # self.assertEqual('d4aacc6c7758c7c968a4fc8d59b041d5', ComputeMD5(a[0])) | |
| 1282 # else: | |
| 1283 # http://effbot.org/zone/pil-comparing-images.htm | |
| 1284 img = Image.frombytes('RGB', [ 640, 480 ], a[0]) | |
| 1285 self.assertLessEqual(GetMaxImageDifference(img, truthRGB), 2) | |
| 304 | 1286 |
|
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1287 ACCEPT2 = copy.deepcopy(ACCEPT) |
| 304 | 1288 if HasGdcmPlugin(ORTHANC): |
|
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1289 IS_GDCM = True |
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1290 ACCEPT2['1.2.840.10008.1.2.1'] = 'multipart/related; type=application/octet-stream' |
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1291 del ACCEPT2['1.2.840.10008.1.2'] |
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1292 else: |
|
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1293 if not IsOrthancVersionAbove(ORTHANC, 1, 12, 1): |
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1294 self.assertEqual('dfdc79f5070926bbb8ac079ee91f5b91', ComputeMD5(a[0])) |
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1295 IS_GDCM = False |
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1296 |
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1297 a = DoGetMultipart(ORTHANC, '%s/frames/1' % uri, |
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1298 headers = { 'Accept' : ACCEPT2['1.2.840.10008.1.2.1'] }) |
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1299 self.assertEqual(1, len(a)) |
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1300 self.assertEqual(480 * 640 * 3, len(a[0])) |
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1301 |
| 543 | 1302 # TODO |
| 1303 # # starting from X.XX.X, Orthanc won't convert YBR to RGB anymore -> new checksum (https://discourse.orthanc-server.org/t/orthanc-convert-ybr-to-rgb-but-does-not-change-metadata/3533) | |
| 1304 # if IsOrthancVersionAbove(ORTHANC, 1, XX, X) and not HasGdcmPlugin(ORTHANC): | |
| 1305 # # GetMaxImageDifference does not work with YBR images -> strict comparison with the output of dcmdjpeg | |
| 1306 # self.assertEqual('d4aacc6c7758c7c968a4fc8d59b041d5', ComputeMD5(a[0])) | |
| 1307 # else: | |
| 1308 # http://effbot.org/zone/pil-comparing-images.htm | |
| 1309 img = Image.frombytes('RGB', [ 640, 480 ], a[0]) | |
| 1310 self.assertLessEqual(GetMaxImageDifference(img, truthRGB), 2) | |
| 304 | 1311 |
| 543 | 1312 # TODO: if not IS_GDCM and not IsOrthancVersionAbove(ORTHANC, 1, XX, X): |
| 1313 if not IS_GDCM: | |
|
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1314 self.assertEqual('dfdc79f5070926bbb8ac079ee91f5b91', ComputeMD5(a[0])) |
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1315 |
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1316 |
|
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1317 # Test download using the same transfer syntax |
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1318 RESULTS = { |
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1319 '1.2.840.10008.1.2' : 'f54c7ea520ab3ec32b6303581ecd262f', |
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1320 '1.2.840.10008.1.2.1' : '4b350b9353a93c747917c7c3bf9b8f44', |
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1321 '1.2.840.10008.1.2.4.50' : '142fdb8a1dc2aa7e6b8952aa294a6e22', |
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1322 '1.2.840.10008.1.2.4.51' : '8b37945d75f9d2899ed868bdba429a0d', |
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1323 '1.2.840.10008.1.2.4.57' : '75c84823eddb560d127b1d24c9406f30', |
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1324 '1.2.840.10008.1.2.4.70' : '2c35726328f0200396e583a0038b0269', |
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1325 } |
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1326 |
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1327 if IS_GDCM: |
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1328 # This file was failing with GDCM, as it has 2 fragments, |
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1329 # and only the first one was returned => the MD5 below is BAD |
| 304 | 1330 #RESULTS['1.2.840.10008.1.2.4.51'] = '901963a322a817946b074f9ed0afa060' |
| 1331 pass | |
| 1332 | |
|
297
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|
1333 for syntax in ACCEPT2: |
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1334 uri = '/dicom-web%s' % UploadAndGetWadoPath('TransferSyntaxes/%s.dcm' % syntax) |
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1335 a = DoGetMultipart(ORTHANC, '%s/frames/1' % uri, |
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1336 headers = { 'Accept' : ACCEPT2[syntax] }) |
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1337 self.assertEqual(1, len(a)) |
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1338 self.assertEqual(RESULTS[syntax], ComputeMD5(a[0])) |
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1339 |
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1340 # Test transcoding to all the possible transfer syntaxes |
|
321
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1341 uri = 'dicom-web%s' % UploadAndGetWadoPath('KarstenHilbertRF.dcm') |
|
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|
1342 for syntax in ACCEPT2: |
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|
1343 a = DoGetMultipart(ORTHANC, '%s/frames/1' % uri, |
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|
1344 headers = { 'Accept' : ACCEPT2[syntax] }, |
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|
1345 returnHeaders = True) |
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1346 self.assertEqual(1, len(a)) |
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1347 self.assertEqual(2, len(a[0])) |
|
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1348 self.assertEqual('%s%s/frames/1' % (ORTHANC['Url'], uri), |
|
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|
1349 a[0][1]['Content-Location']) |
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1350 self.assertEqual(ACCEPT[syntax], |
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1351 'multipart/related; type=%s' % a[0][1]['Content-Type']) |
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|
1352 if IS_GDCM: |
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|
1353 self.assertEqual({ |
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1354 '1.2.840.10008.1.2' : '1c8cebde0c74450ce4dfb75dd52ddad7', |
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1355 '1.2.840.10008.1.2.1' : '1c8cebde0c74450ce4dfb75dd52ddad7', |
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|
1356 '1.2.840.10008.1.2.4.50' : 'f4d145e5f33fbd39375ce0f91453d6cc', |
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|
1357 '1.2.840.10008.1.2.4.51' : 'f4d145e5f33fbd39375ce0f91453d6cc', |
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1358 '1.2.840.10008.1.2.4.57' : 'dc55800ce1a8ac556c266cdb26d75757', |
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1359 '1.2.840.10008.1.2.4.70' : 'dc55800ce1a8ac556c266cdb26d75757', |
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|
1360 } [syntax], ComputeMD5(a[0][0])) |
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|
1361 else: |
|
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|
1362 self.assertEqual({ |
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|
1363 '1.2.840.10008.1.2' : '1c8cebde0c74450ce4dfb75dd52ddad7', |
|
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|
1364 '1.2.840.10008.1.2.1' : '1c8cebde0c74450ce4dfb75dd52ddad7', |
|
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|
1365 '1.2.840.10008.1.2.4.50' : '0a0ab74fe7c68529bdd416fc9e5e742a', |
|
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|
1366 '1.2.840.10008.1.2.4.51' : '33d1ab2fe169c5b5ba932a9bbc3c6306', |
|
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|
1367 '1.2.840.10008.1.2.4.57' : '3d21c969da846ca41e0498a0dcfad061', |
|
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|
1368 '1.2.840.10008.1.2.4.70' : '49d5353c8673208629847ad45a855557', |
|
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|
1369 } [syntax], ComputeMD5(a[0][0])) |
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|
1370 |
|
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|
1371 |
|
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|
1372 # JPEG image with many fragments for 2 frames |
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|
1373 uri = '/dicom-web%s' % UploadAndGetWadoPath('LenaTwiceWithFragments.dcm') |
|
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|
1374 |
|
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|
1375 a = DoGetMultipart(ORTHANC, '%s/frames/1' % uri, |
|
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1376 headers = { 'Accept' : ACCEPT['1.2.840.10008.1.2.4.50'] }) |
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|
1377 self.assertEqual(1, len(a)) |
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|
1378 self.assertEqual(69214, len(a[0])) |
|
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|
1379 self.assertEqual('0eaf36d4881c513ca70b6684bfaa5b08', ComputeMD5(a[0])) |
|
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|
1380 |
|
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|
1381 b = DoGetMultipart(ORTHANC, '%s/frames/2' % uri, |
|
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|
1382 headers = { 'Accept' : ACCEPT['1.2.840.10008.1.2.4.50'] }) |
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|
1383 self.assertEqual(1, len(b)) |
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1384 self.assertEqual(a[0], b[0]) |
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1385 |
|
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|
1386 b = DoGetMultipart(ORTHANC, '%s/frames/1,2' % uri, |
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|
1387 headers = { 'Accept' : ACCEPT['1.2.840.10008.1.2.4.50'] }) |
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1388 self.assertEqual(2, len(b)) |
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1389 self.assertEqual(a[0], b[0]) |
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1390 self.assertEqual(a[0], b[1]) |
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|
1391 |
|
318
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|
1392 |
|
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|
1393 def test_wado_transcoding(self): |
|
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1394 uri = '/dicom-web%s' % UploadAndGetWadoPath('TransferSyntaxes/1.2.840.10008.1.2.4.50.dcm') |
|
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1395 |
|
367
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|
1396 compressedSize = os.path.getsize(GetDatabasePath('TransferSyntaxes/1.2.840.10008.1.2.4.50.dcm')) |
|
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1397 |
|
318
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|
1398 self.assertRaises(Exception, lambda: DoGetMultipart(ORTHANC, '%s' % uri, |
|
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1399 headers = { 'Accept' : 'nope' })) |
|
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1400 |
|
367
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|
1401 # Up to release 1.5 of the DICOMweb plugin, if no |
|
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|
1402 # transfer-syntax was specified, no transcoding occured. This |
|
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|
1403 # was because of an undefined behavior up to DICOM |
|
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1404 # 2016b. Starting with DICOM 2016c, the standard explicitly |
|
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|
1405 # states that the image should be transcoded to Little Endian |
|
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|
1406 # Explicit. |
|
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1407 a = DoGetMultipart(ORTHANC, '%s' % uri, |
|
367
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1408 headers = { }) |
|
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1409 self.assertEqual(1, len(a)) |
|
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1410 self.assertEqual('1.2.840.10008.1.2.1', GetTransferSyntax(a[0])) |
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1411 self.assertTrue(10 * compressedSize < len(a[0])) |
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1412 uncompressedSize = len(a[0]) |
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1413 |
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1414 a = DoGetMultipart(ORTHANC, '%s' % uri, |
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1415 headers = { 'Accept' : 'multipart/related' }) |
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1416 self.assertEqual(1, len(a)) |
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1417 self.assertEqual('1.2.840.10008.1.2.1', GetTransferSyntax(a[0])) |
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1418 self.assertEqual(uncompressedSize, len(a[0])) |
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1419 |
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1420 a = DoGetMultipart(ORTHANC, '%s' % uri, |
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1421 headers = { 'Accept' : 'multipart/related; type=application/dicom' }) |
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1422 self.assertEqual(1, len(a)) |
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1423 self.assertEqual('1.2.840.10008.1.2.1', GetTransferSyntax(a[0])) |
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1424 self.assertEqual(uncompressedSize, len(a[0])) |
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1425 |
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1426 a = DoGetMultipart(ORTHANC, '%s' % uri, |
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1427 headers = { 'Accept' : 'multipart/related; type=application/dicom; transfer-syntax=*' }) |
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1428 self.assertEqual(1, len(a)) |
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1429 self.assertEqual('1.2.840.10008.1.2.4.50', GetTransferSyntax(a[0])) |
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1430 self.assertEqual(compressedSize, len(a[0])) |
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1431 |
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1432 # Use source transfer syntax |
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1433 a = DoGetMultipart(ORTHANC, '%s' % uri, |
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1434 headers = { 'Accept' : 'multipart/related; type=application/dicom; transfer-syntax=1.2.840.10008.1.2.4.50' }) |
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1435 self.assertEqual(1, len(a)) |
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1436 self.assertEqual('1.2.840.10008.1.2.4.50', GetTransferSyntax(a[0])) |
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1437 self.assertEqual(compressedSize, len(a[0])) |
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1438 |
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1439 a = DoGetMultipart(ORTHANC, '%s' % uri, |
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1440 headers = { 'Accept' : 'multipart/related; type=application/dicom; transfer-syntax=1.2.840.10008.1.2.1' }) |
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1441 self.assertEqual(1, len(a)) |
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1442 self.assertEqual('1.2.840.10008.1.2.1', GetTransferSyntax(a[0])) |
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1443 self.assertEqual(uncompressedSize, len(a[0])) |
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1444 |
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|
1445 # Transcoding |
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1446 a = DoGetMultipart(ORTHANC, '%s' % uri, |
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1447 headers = { 'Accept' : 'multipart/related; type=application/dicom; transfer-syntax=1.2.840.10008.1.2.4.57' }) |
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|
1448 self.assertEqual(1, len(a)) |
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1449 self.assertEqual('1.2.840.10008.1.2.4.57', GetTransferSyntax(a[0])) |
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1450 self.assertNotEqual(compressedSize, len(a[0])) |
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1451 self.assertNotEqual(uncompressedSize, len(a[0])) |
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1452 |
|
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1453 |
|
325
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1454 def test_compare_wado_uri_and_rs(self): |
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1455 # https://groups.google.com/d/msg/orthanc-users/mKgr2QAKTCU/R7u4I1LvBAAJ |
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1456 |
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1457 # Image "2020-08-12-Christopher.dcm" corresponds to the result of: |
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1458 # $ gdcmconv --raw 1.2.840.113704.9.1000.16.2.20190613104005642000100010001.dcm 2020-08-12-Christopher.dcm |
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1459 # Image "2020-08-12-Christopher.png" corresponds to "2.png" |
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1460 |
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|
1461 i = UploadInstance(ORTHANC, '2020-08-12-Christopher.dcm') ['ID'] |
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1462 STUDY = '1.2.840.113704.9.1000.16.0.20190613103939444' |
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1463 SERIES = '1.2.840.113704.9.1000.16.1.2019061310394289000010001' |
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1464 INSTANCE = '1.2.840.113704.9.1000.16.2.20190613104005642000100010001' |
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|
1465 |
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|
1466 with open(GetDatabasePath('2020-08-12-Christopher.png'), 'rb') as f: |
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|
1467 truth = UncompressImage(f.read()) |
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|
1468 |
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|
1469 im1 = GetImage(ORTHANC, args.wado + '?requestType=WADO&objectUID=%s&contentType=image/jpg' % INSTANCE) |
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|
1470 self.assertEqual('JPEG', im1.format) |
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1471 |
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1472 im2 = GetImage(ORTHANC, args.wado + '?requestType=WADO&objectUID=%s&contentType=image/png' % INSTANCE) |
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1473 self.assertEqual('PNG', im2.format) |
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1474 |
|
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1475 im3 = GetImage(ORTHANC, '/dicom-web/studies/%s/series/%s/instances/%s/frames/1/rendered?window=200,800,linear' % (STUDY, SERIES, INSTANCE)) |
|
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|
1476 self.assertEqual('JPEG', im3.format) |
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1477 |
|
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1478 im4 = GetImage(ORTHANC, '/dicom-web/studies/%s/series/%s/instances/%s/rendered?window=200,800,linear' % (STUDY, SERIES, INSTANCE), |
|
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1479 headers = { 'Accept' : 'image/png' }) |
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1480 self.assertEqual('PNG', im4.format) |
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1481 |
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1482 im5 = GetImage(ORTHANC, '/instances/%s/rendered' % i, { 'Accept' : 'image/jpeg' }) |
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1483 self.assertEqual('JPEG', im5.format) |
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1484 |
|
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1485 im6 = GetImage(ORTHANC, '/instances/%s/rendered' % i) |
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1486 self.assertEqual('PNG', im6.format) |
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1487 |
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1488 for im in [ truth, im1, im2, im3, im4, im5, im6 ]: |
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1489 self.assertEqual('L', im.mode) |
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1490 self.assertEqual(512, im.size[0]) |
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1491 self.assertEqual(512, im.size[1]) |
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1492 |
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1493 # The following fails in DICOMweb plugin <= 1.2, as "/rendered" |
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1494 # was redirecting to the "/preview" route of Orthanc |
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1495 # http://effbot.org/zone/pil-comparing-images.htm |
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1496 self.assertLess(ImageChops.difference(im1, im3).getextrema() [1], 10) |
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1497 self.assertLess(ImageChops.difference(im2, im4).getextrema() [1], 2) |
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1498 self.assertLess(ImageChops.difference(im3, im5).getextrema() [1], 10) |
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1499 self.assertLess(ImageChops.difference(im4, im6).getextrema() [1], 2) |
|
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1500 self.assertTrue(ImageChops.difference(im1, im5).getbbox() is None) |
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1501 self.assertTrue(ImageChops.difference(im2, im6).getbbox() is None) |
| 345 | 1502 |
| 1503 bbox = ImageChops.difference(im2, truth).getbbox() | |
| 346 | 1504 if bbox != None: |
| 1505 # Tolerance of just 1 pixel of difference (needed on Windows) | |
| 1506 #print(im2.getpixel((238,275))) # => 255 | |
| 1507 #print(truth.getpixel((238,275))) # => 254 | |
| 1508 self.assertLessEqual(abs(bbox[2] - bbox[0]), 1) | |
| 1509 self.assertLessEqual(abs(bbox[3] - bbox[1]), 1) | |
|
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1510 |
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1511 |
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1512 def test_issue_195(self): |
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1513 # This fails on Orthanc <= 1.9.2 |
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1514 # https://bugs.orthanc-server.com/show_bug.cgi?id=195 |
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1515 a = UploadInstance(ORTHANC, 'Issue195.dcm') ['ID'] |
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1516 b = DoGet(ORTHANC, 'dicom-web/studies/1.2.276.0.7230010.3.1.2.8323329.13188.1620309604.848733/series/1.2.276.0.7230010.3.1.3.8323329.13188.1620309604.848734/instances/1.2.276.0.7230010.3.1.4.8323329.13188.1620309604.848735/metadata', |
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1517 headers = { 'Accept' : 'application/dicom+json' }) |
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1518 |
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1519 self.assertEqual(1, len(b)) |
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1520 self.assertEqual(5, len(b[0])) |
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1521 |
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1522 # The expected result can be found by typing "dcm2json Database/Issue195.dcm" |
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1523 self.assertEqual(2, len(b[0]["00080018"])) |
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1524 self.assertEqual("UI", b[0]["00080018"]["vr"]) |
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1525 self.assertEqual("1.2.276.0.7230010.3.1.4.8323329.13188.1620309604.848735", |
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|
1526 b[0]["00080018"]["Value"][0]) |
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1527 |
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1528 self.assertEqual(2, len(b[0]["0020000D"])) |
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1529 self.assertEqual("UI", b[0]["0020000D"]["vr"]) |
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1530 self.assertEqual("1.2.276.0.7230010.3.1.2.8323329.13188.1620309604.848733", |
|
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|
1531 b[0]["0020000D"]["Value"][0]) |
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1532 |
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1533 self.assertEqual(2, len(b[0]["0020000E"])) |
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|
1534 self.assertEqual("UI", b[0]["0020000E"]["vr"]) |
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1535 self.assertEqual("1.2.276.0.7230010.3.1.3.8323329.13188.1620309604.848734", |
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|
1536 b[0]["0020000E"]["Value"][0]) |
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1537 |
|
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|
1538 self.assertEqual(1, len(b[0]["00081030"])) # Case of an empty value |
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1539 self.assertEqual("LO", b[0]["00081030"]["vr"]) |
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1540 |
|
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|
1541 self.assertEqual(2, len(b[0]["0008103E"])) |
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|
1542 self.assertEqual("LO", b[0]["0008103E"]["vr"]) |
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|
1543 self.assertEqual("Hello1", b[0]["0008103E"]["Value"][0]) |
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|
1544 |
|
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|
1545 |
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|
1546 DoDelete(ORTHANC, 'instances/%s' % a) |
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1547 a = UploadInstance(ORTHANC, 'Issue195-bis.dcm') ['ID'] |
|
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1548 URI = 'dicom-web/studies/1.2.276.0.7230010.3.1.2.8323329.6792.1625504071.652468/series/1.2.276.0.7230010.3.1.3.8323329.6792.1625504071.652469/instances/1.2.276.0.7230010.3.1.4.8323329.6792.1625504071.652470' |
|
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|
1549 b = DoGet(ORTHANC, '%s/metadata' % URI, |
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1550 headers = { 'Accept' : 'application/dicom+json' }) |
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|
1551 |
|
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|
1552 self.assertEqual(1, len(b)) |
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|
1553 self.assertEqual(5, len(b[0])) |
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1554 |
|
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|
1555 # The expected result can be found by typing "dcm2json ../../Database/Issue195-bis.dcm" |
|
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|
1556 self.assertEqual(2, len(b[0]["00080018"])) |
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|
1557 self.assertEqual("UI", b[0]["00080018"]["vr"]) |
|
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|
1558 self.assertEqual("1.2.276.0.7230010.3.1.4.8323329.6792.1625504071.652470", |
|
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|
1559 b[0]["00080018"]["Value"][0]) |
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|
1560 |
|
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|
1561 self.assertEqual(2, len(b[0]["0020000D"])) |
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|
1562 self.assertEqual("UI", b[0]["0020000D"]["vr"]) |
|
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|
1563 self.assertEqual("1.2.276.0.7230010.3.1.2.8323329.6792.1625504071.652468", |
|
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|
1564 b[0]["0020000D"]["Value"][0]) |
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|
1565 |
|
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|
1566 self.assertEqual(2, len(b[0]["0020000E"])) |
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|
1567 self.assertEqual("UI", b[0]["0020000E"]["vr"]) |
|
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|
1568 self.assertEqual("1.2.276.0.7230010.3.1.3.8323329.6792.1625504071.652469", |
|
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|
1569 b[0]["0020000E"]["Value"][0]) |
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|
1570 |
|
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|
1571 self.assertEqual(2, len(b[0]["00084567"])) |
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1572 self.assertEqual("UN", b[0]["00084567"]["vr"]) |
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1573 self.assertEqual('http://%s:%s%s' % (args.server, args.rest, '/%s/bulk/00084567' % URI), |
|
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|
1574 b[0]["00084567"]["BulkDataURI"]) |
|
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1575 |
|
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|
1576 c = DoGet(ORTHANC, '%s/bulk/00084567' % URI) |
|
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1577 self.assertTrue('Content-Length: 2\r\n' in c) |
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1578 index = c.find('\r\n\r\n') |
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1579 self.assertEqual(0x42, ord(c[index + 4])) |
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1580 self.assertEqual(0x00, ord(c[index + 5])) |
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1581 |
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|
1582 # Case of an empty value, fails in Orthanc <= 1.9.2 because of issue #195 |
|
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1583 self.assertEqual(1, len(b[0]["00084565"])) |
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1584 self.assertEqual("UN", b[0]["00084565"]["vr"]) |
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1585 |
|
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1586 |
|
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1587 |
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1588 |
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|
1589 def test_multiframe_windowing(self): |
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1590 # Fixed in DICOMweb 1.7 |
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1591 def GetLinear(x, c, w): |
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1592 # http://dicom.nema.org/MEDICAL/dicom/2019a/output/chtml/part03/sect_C.11.2.html#sect_C.11.2.1.2.1 |
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1593 ymin = 0.0 |
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1594 ymax = 255.0 |
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1595 if float(x) <= float(c) - 0.5 - (float(w) - 1.0) / 2.0: |
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1596 return ymin |
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1597 elif float(x) > float(c) - 0.5 + (float(w) - 1.0) / 2.0 : |
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|
1598 return ymax |
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1599 else: |
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1600 return ((float(x) - (float(c) - 0.5)) / (float(w) - 1.0) + 0.5) * (ymax - ymin) + ymin |
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changeset
|
1601 |
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|
1602 def GetLinearExact(x, c, w): |
|
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|
1603 # http://dicom.nema.org/MEDICAL/dicom/2019a/output/chtml/part03/sect_C.11.2.html#sect_C.11.2.1.3.2 |
|
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|
1604 ymin = 0.0 |
|
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1605 ymax = 255.0 |
|
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|
1606 if float(x) <= float(c) - float(w) / 2.0: |
|
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1607 return ymin |
|
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|
1608 elif float(x) > float(c) + float(w) / 2.0: |
|
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1609 return ymax |
|
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changeset
|
1610 else: |
|
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|
1611 return (float(x) - float(c)) / float(w) * (ymax- ymin) + ymin |
|
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changeset
|
1612 |
|
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|
1613 def GetSigmoid(x, c, w): |
|
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|
1614 # http://dicom.nema.org/MEDICAL/dicom/2019a/output/chtml/part03/sect_C.11.2.html#sect_C.11.2.1.3.1 |
|
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changeset
|
1615 ymin = 0.0 |
|
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diff
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|
1616 ymax = 255.0 |
|
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|
1617 return (ymax - ymin) / (1.0 + math.exp(-4 * (float(x) - float(c)) / float(w))) |
|
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|
1618 |
|
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|
1619 self.assertAlmostEqual(GetLinear(10, 0, 100), 154.54545454545456) |
|
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|
1620 self.assertAlmostEqual(GetLinear(-1000, 2048, 4096), 0) |
|
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|
1621 self.assertAlmostEqual(GetLinear(5096, 2048, 4096), 255) |
|
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|
1622 self.assertAlmostEqual(GetLinear(333, 2048, 4096), 20.7362637362637) |
|
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|
1623 self.assertAlmostEqual(GetLinear(16, 127, 256), 17) |
|
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|
1624 |
|
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|
1625 self.assertAlmostEqual(GetLinearExact(-1000, 2048, 4096), 0) |
|
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|
1626 self.assertAlmostEqual(GetLinearExact(5096, 2048, 4096), 255) |
|
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|
1627 self.assertAlmostEqual(GetLinearExact(150, 127, 256), 22.91015625) |
|
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|
1628 |
|
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|
1629 self.assertAlmostEqual(GetSigmoid(150, 127, 256), 150.166728345797) |
|
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|
1630 |
|
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|
1631 UploadInstance(ORTHANC, 'MultiframeWindowing.dcm') |
|
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|
1632 STUDY = '1.2.840.113619.2.176.2025.1499492.7391.1175285944.390' |
|
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|
1633 SERIES = '1.2.840.113619.2.176.2025.1499492.7391.1175285944.394' |
|
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|
1634 INSTANCE = '1.2.840.113619.2.176.2025.1499492.7040.1175286242.109' |
|
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|
1635 |
|
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changeset
|
1636 im = GetImage(ORTHANC, '/dicom-web/studies/%s/series/%s/instances/%s/frames/1/rendered?window=127,256,linear' % (STUDY, SERIES, INSTANCE)) |
|
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|
1637 self.assertLessEqual(abs(GetLinear(0x00, 127, 256) - im.getpixel((0, 0))), 1) |
|
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|
1638 self.assertLessEqual(abs(GetLinear(0x10, 127, 256) - im.getpixel((1, 0))), 1) |
|
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|
1639 self.assertLessEqual(abs(GetLinear(0x20, 127, 256) - im.getpixel((0, 1))), 1.1) |
|
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|
1640 self.assertLessEqual(abs(GetLinear(0x30, 127, 256) - im.getpixel((1, 1))), 1.1) |
|
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changeset
|
1641 |
|
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|
1642 im = GetImage(ORTHANC, '/dicom-web/studies/%s/series/%s/instances/%s/frames/1/rendered?window=0,256,linear-exact' % (STUDY, SERIES, INSTANCE)) |
|
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|
1643 self.assertLessEqual(abs(GetLinearExact(0x00, 0, 256) - im.getpixel((0, 0))), 1) |
|
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|
1644 self.assertLessEqual(abs(GetLinearExact(0x10, 0, 256) - im.getpixel((1, 0))), 1) |
|
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|
1645 self.assertLessEqual(abs(GetLinearExact(0x20, 0, 256) - im.getpixel((0, 1))), 1.2) |
|
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|
1646 self.assertLessEqual(abs(GetLinearExact(0x30, 0, 256) - im.getpixel((1, 1))), 1.2) |
|
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|
1647 |
|
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|
1648 im = GetImage(ORTHANC, '/dicom-web/studies/%s/series/%s/instances/%s/frames/1/rendered?window=127,256,sigmoid' % (STUDY, SERIES, INSTANCE)) |
|
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|
1649 self.assertLessEqual(abs(GetSigmoid(0x00, 127, 256) - im.getpixel((0, 0))), 3) |
|
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|
1650 self.assertLessEqual(abs(GetSigmoid(0x10, 127, 256) - im.getpixel((1, 0))), 1) |
|
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|
1651 self.assertLessEqual(abs(GetSigmoid(0x20, 127, 256) - im.getpixel((0, 1))), 1) |
|
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|
1652 self.assertLessEqual(abs(GetSigmoid(0x30, 127, 256) - im.getpixel((1, 1))), 1) |
|
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|
1653 |
|
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|
1654 im = GetImage(ORTHANC, '/dicom-web/studies/%s/series/%s/instances/%s/frames/1/rendered?window=16,128,linear' % (STUDY, SERIES, INSTANCE)) |
|
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|
1655 self.assertLessEqual(abs(GetLinear(0x00, 16, 128) - im.getpixel((0, 0))), 1) |
|
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|
1656 self.assertLessEqual(abs(GetLinear(0x10, 16, 128) - im.getpixel((1, 0))), 1) |
|
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|
1657 self.assertLessEqual(abs(GetLinear(0x20, 16, 128) - im.getpixel((0, 1))), 2) |
|
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changeset
|
1658 self.assertLessEqual(abs(GetLinear(0x30, 16, 128) - im.getpixel((1, 1))), 2) |
|
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changeset
|
1659 |
|
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changeset
|
1660 im = GetImage(ORTHANC, '/dicom-web/studies/%s/series/%s/instances/%s/frames/2/rendered?window=127,256,linear' % (STUDY, SERIES, INSTANCE)) |
|
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|
1661 ri = 100.0 |
|
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|
1662 rs = 1.0 |
|
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|
1663 self.assertLessEqual(abs(GetLinear(0x00 * rs + ri, 127, 256) - im.getpixel((0, 0))), 1) |
|
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|
1664 self.assertLessEqual(abs(GetLinear(0x10 * rs + ri, 127, 256) - im.getpixel((1, 0))), 1) |
|
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|
1665 self.assertLessEqual(abs(GetLinear(0x20 * rs + ri, 127, 256) - im.getpixel((0, 1))), 1) |
|
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|
1666 self.assertLessEqual(abs(GetLinear(0x30 * rs + ri, 127, 256) - im.getpixel((1, 1))), 1) |
|
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|
1667 |
|
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|
1668 im = GetImage(ORTHANC, '/dicom-web/studies/%s/series/%s/instances/%s/frames/3/rendered?window=127,256,linear' % (STUDY, SERIES, INSTANCE)) |
|
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|
1669 ri = 0.0 |
|
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|
1670 rs = 2.0 |
|
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|
1671 self.assertLessEqual(abs(GetLinear(0x00 * rs + ri, 127, 256) - im.getpixel((0, 0))), 1) |
|
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|
1672 self.assertLessEqual(abs(GetLinear(0x10 * rs + ri, 127, 256) - im.getpixel((1, 0))), 1.1) |
|
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|
1673 self.assertLessEqual(abs(GetLinear(0x20 * rs + ri, 127, 256) - im.getpixel((0, 1))), 1) |
|
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|
1674 self.assertLessEqual(abs(GetLinear(0x30 * rs + ri, 127, 256) - im.getpixel((1, 1))), 1) |
|
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|
1675 |
|
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|
1676 im = GetImage(ORTHANC, '/dicom-web/studies/%s/series/%s/instances/%s/frames/4/rendered?window=127,256,linear' % (STUDY, SERIES, INSTANCE)) |
|
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|
1677 ri = 100.0 |
|
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|
1678 rs = 2.0 |
|
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|
1679 self.assertLessEqual(abs(GetLinear(0x00 * rs + ri, 127, 256) - im.getpixel((0, 0))), 1) |
|
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|
1680 self.assertLessEqual(abs(GetLinear(0x10 * rs + ri, 127, 256) - im.getpixel((1, 0))), 1) |
|
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changeset
|
1681 self.assertLessEqual(abs(GetLinear(0x20 * rs + ri, 127, 256) - im.getpixel((0, 1))), 1) |
|
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changeset
|
1682 self.assertLessEqual(abs(GetLinear(0x30 * rs + ri, 127, 256) - im.getpixel((1, 1))), 1) |
|
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|
1683 |
|
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|
1684 |
| 532 | 1685 def test_forwarded_headers(self): |
| 1686 study = UploadInstance(ORTHANC, 'ColorTestImageJ.dcm')['ParentStudy'] | |
| 1687 studyId = DoGet(ORTHANC, '/studies/%s' % study)['MainDicomTags']['StudyInstanceUID'] | |
| 1688 | |
| 1689 m = DoGet(ORTHANC, '/dicom-web/studies/%s/metadata' % studyId) | |
| 533 | 1690 self.assertIn(ORTHANC['Url'], m[0][u'7FE00010']['BulkDataURI']) |
| 532 | 1691 |
| 1692 m = DoGet(ORTHANC, '/dicom-web/studies/%s/metadata' % studyId, headers= { | |
| 1693 'host': 'my-domain' | |
| 1694 }) | |
| 1695 self.assertIn("http://my-domain/dicom-web", m[0][u'7FE00010']['BulkDataURI']) | |
| 1696 | |
| 1697 m = DoGet(ORTHANC, '/dicom-web/studies/%s/metadata' % studyId, headers= { | |
| 1698 'forwarded': 'host=my-domain;proto=https' | |
| 1699 }) | |
| 1700 self.assertIn("https://my-domain/dicom-web", m[0][u'7FE00010']['BulkDataURI']) | |
| 1701 | |
| 1702 if IsPluginVersionAbove(ORTHANC, "dicom-web", 1, 13, 1): | |
| 1703 m = DoGet(ORTHANC, '/dicom-web/studies/%s/metadata' % studyId, headers= { | |
| 1704 'X-Forwarded-Host': 'my-domain', | |
| 1705 'X-Forwarded-Proto': 'https' | |
| 1706 }) | |
| 1707 self.assertIn("https://my-domain/dicom-web", m[0][u'7FE00010']['BulkDataURI']) | |
| 1708 | |
| 1709 | |
| 1710 | |
|
32
682c4e2a1162
integration tests for wado
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
1711 try: |
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682c4e2a1162
integration tests for wado
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
1712 print('\nStarting the tests...') |
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682c4e2a1162
integration tests for wado
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
1713 unittest.main(argv = [ sys.argv[0] ] + args.options) |
|
682c4e2a1162
integration tests for wado
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
1714 |
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682c4e2a1162
integration tests for wado
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
1715 finally: |
|
682c4e2a1162
integration tests for wado
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
1716 print('\nDone') |