Mercurial > hg > orthanc-tests
annotate Plugins/Worklists/Run.py @ 633:7bb22f87fc5b
fix auth test wrt plugin version
author | Alain Mazy <am@osimis.io> |
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date | Tue, 19 Mar 2024 08:51:56 +0100 |
parents | 575aa420f866 |
children | 88539de02bcc |
rev | line source |
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1 #!/usr/bin/python3 |
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2 # -*- coding: utf-8 -*- |
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3 |
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4 |
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5 # Orthanc - A Lightweight, RESTful DICOM Store |
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6 # Copyright (C) 2012-2016 Sebastien Jodogne, Medical Physics |
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7 # Department, University Hospital of Liege, Belgium |
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8 # Copyright (C) 2017-2023 Osimis S.A., Belgium |
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9 # Copyright (C) 2021-2023 Sebastien Jodogne, ICTEAM UCLouvain, Belgium |
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10 # |
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11 # This program is free software: you can redistribute it and/or |
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12 # modify it under the terms of the GNU General Public License as |
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13 # published by the Free Software Foundation, either version 3 of the |
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14 # License, or (at your option) any later version. |
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15 # |
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16 # This program is distributed in the hope that it will be useful, but |
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17 # WITHOUT ANY WARRANTY; without even the implied warranty of |
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18 # MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU |
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19 # General Public License for more details. |
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20 # |
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21 # You should have received a copy of the GNU General Public License |
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22 # along with this program. If not, see <http://www.gnu.org/licenses/>. |
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23 |
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24 |
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25 import argparse |
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26 import os |
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27 import pprint |
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28 import re |
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29 import subprocess |
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30 import sys |
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31 import tempfile |
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32 import unittest |
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33 from shutil import copyfile |
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34 |
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35 sys.path.append(os.path.join(os.path.dirname(__file__), '..', '..', 'Tests')) |
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36 from Toolbox import * |
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37 |
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38 |
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39 ## |
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40 ## Parse the command-line arguments |
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41 ## |
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42 |
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43 parser = argparse.ArgumentParser(description = 'Run the integration tests for the DICOM worklist plugin.') |
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44 |
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45 parser.add_argument('--server', |
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46 default = 'localhost', |
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47 help = 'Address of the Orthanc server to test') |
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48 parser.add_argument('--rest', |
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49 type = int, |
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50 default = 8042, |
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51 help = 'Port to the REST API') |
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52 parser.add_argument('--username', |
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53 default = 'alice', |
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54 help = 'Username to the REST API') |
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55 parser.add_argument('--password', |
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56 default = 'orthanctest', |
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57 help = 'Password to the REST API') |
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58 parser.add_argument('--dicom', |
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59 type = int, |
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60 default = 4242, |
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61 help = 'DICOM port of the Orthanc instance to test') |
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62 parser.add_argument('options', metavar = 'N', nargs = '*', |
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63 help='Arguments to Python unittest') |
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64 |
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65 args = parser.parse_args() |
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66 |
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67 |
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68 |
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69 ORTHANC = DefineOrthanc(server = args.server, |
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70 username = args.username, |
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71 password = args.password, |
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72 restPort = args.rest) |
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73 |
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74 |
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75 |
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76 ## |
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77 ## Toolbox |
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78 ## |
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79 |
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80 DATABASE = os.path.abspath(os.path.normpath(os.path.join(os.path.dirname(__file__), '..', '..', 'Database', 'Worklists'))) |
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81 WORKING = os.path.join(DATABASE, 'Working') |
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82 |
108 | 83 print('Database directory: %s' % DATABASE) |
84 print('Working directory: %s' % WORKING) | |
85 | |
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86 try: |
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87 os.mkdir(WORKING) |
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88 except Exception as e: |
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89 # The working folder has already been created |
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90 pass |
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91 |
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92 def ClearDatabase(): |
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93 for f in os.listdir(WORKING): |
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94 if f != 'lockfile': |
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95 os.remove(os.path.join(WORKING, f)) |
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96 |
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97 def AddToDatabase(worklist): |
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98 extension = os.path.splitext(worklist)[1].lower() |
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99 source = os.path.join(DATABASE, worklist) |
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100 target = os.path.join(WORKING, os.path.basename(worklist) + '.wl') |
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101 |
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102 if extension == '.dump': |
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103 subprocess.check_call([ 'dump2dcm', '--write-xfer-little', source, target ]) |
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104 else: |
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105 copyfile(source, target) |
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106 |
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107 |
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108 def RunQuery(source, ignoreTags): |
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109 with tempfile.NamedTemporaryFile() as f: |
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110 subprocess.check_call([ 'dump2dcm', '--write-xfer-little', |
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111 os.path.join(DATABASE, source), f.name ]) |
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112 |
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113 a = subprocess.check_output([ 'findscu', '-v', '--call', 'ORTHANC', '-aet', 'ORTHANCTEST', |
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114 args.server, str(args.dicom), f.name ], |
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115 stderr = subprocess.STDOUT).splitlines() |
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116 |
612 | 117 if sys.version_info.major == 2: |
118 if len(list(filter(lambda x: x.startswith('E:'), a))) > 0: | |
119 raise Exception('Error while running findscu') | |
120 else: | |
121 # pprint.pprint(a) | |
122 a = list(map(lambda x: x.decode('utf-8', errors="ignore"), a)) | |
123 # pprint.pprint(a) | |
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124 |
612 | 125 if len(list(filter(lambda x: x.startswith('E:'), a))) > 0: |
126 raise Exception('Error while running findscu') | |
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127 |
108 | 128 b = map(lambda x: x[3:], filter(lambda x: (x.startswith('I: ---') or |
129 x.startswith('W: ---') or | |
130 x.startswith('I: (') or | |
131 x.startswith('W: (')), a)) | |
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132 b = map(lambda x: re.sub(r'\s*#.*', '', x), b) |
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133 |
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134 answers = [] |
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135 current = [] |
108 | 136 isQuery = True |
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137 |
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138 for l in b: |
108 | 139 l = l.replace('\0', '') |
140 | |
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141 if l[0] == '-': |
108 | 142 if isQuery: |
143 isQuery = False | |
144 else: | |
145 # This is a separator between DICOM datasets | |
146 if len(current) > 0: | |
147 answers.append(current) | |
148 current = [] | |
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149 |
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150 else: |
108 | 151 if not isQuery: |
152 tag = l[1:10].lower() | |
153 if not tag in ignoreTags: | |
154 current.append(l) | |
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155 |
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156 if len(current) > 0: |
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157 answers.append(current) |
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158 |
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159 return answers |
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160 |
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161 def CompareAnswers(expected, actual): |
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162 if len(expected) != len(actual): |
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163 return False |
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164 |
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165 if len(expected) == 0: |
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166 return True |
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167 |
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168 for i in range(len(expected)): |
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169 for j in range(len(actual)): |
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170 if expected[i] == actual[j]: |
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171 return True |
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172 |
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173 return False |
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174 |
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175 |
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176 def ParseTopLevelTags(answer): |
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177 tags = {} |
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178 for line in answer: |
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179 m = re.match(r'^\(([0-9a-f]{4},[0-9a-f]{4})\)\s*..\s*\[([^]]*)\]', line) |
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180 tags[m.group(1)] = m.group(2).strip() |
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181 |
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182 return tags |
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183 |
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184 |
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185 ## |
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186 ## The tests |
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187 ## |
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188 |
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189 class Orthanc(unittest.TestCase): |
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190 def setUp(self): |
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191 if (sys.version_info >= (3, 0)): |
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192 # Remove annoying warnings about unclosed socket in Python 3 |
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193 import warnings |
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194 warnings.simplefilter("ignore", ResourceWarning) |
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195 |
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196 ClearDatabase() |
174 | 197 DoPost(ORTHANC, '/tools/execute-script', 'function IncomingWorklistRequestFilter(query, origin) return query end', 'application/lua') |
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198 |
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199 |
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200 def test_single(self): |
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201 for db in range(1, 11): |
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202 ClearDatabase() |
91 | 203 AddToDatabase('Dcmtk/Database/wklist%d.dump' % db) |
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204 |
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205 for query in range(0, 13): |
91 | 206 answers = RunQuery('Dcmtk/Queries/wlistqry%d.dump' % query, [ |
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207 '0008,0005', |
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208 '0040,0004', |
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209 '0040,0005', |
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210 '0040,0020', |
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211 ]) |
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212 |
91 | 213 with open(os.path.join('%s/Dcmtk/Expected/single-%d-%d.json' % (DATABASE, db, query)), 'r') as f: |
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214 expected = json.loads(f.read()) |
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215 self.assertTrue(CompareAnswers(expected, answers)) |
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216 |
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217 |
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218 def test_all(self): |
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219 ClearDatabase() |
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220 |
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221 for db in range(1, 11): |
91 | 222 AddToDatabase('Dcmtk/Database/wklist%d.dump' % db) |
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223 |
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224 for query in range(0, 13): |
91 | 225 answers = RunQuery('Dcmtk/Queries/wlistqry%d.dump' % query, [ |
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226 '0008,0005', |
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227 '0040,0004', |
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228 '0040,0005', |
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229 '0040,0020', |
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230 ]) |
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231 |
91 | 232 with open(os.path.join('%s/Dcmtk/Expected/all-%d.json' % (DATABASE, query)), 'r') as f: |
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233 expected = json.loads(f.read()) |
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234 self.assertTrue(CompareAnswers(expected, answers)) |
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235 |
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236 |
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237 def test_vet(self): |
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238 AddToDatabase('Sequences/STATION_AET/orig.7705.dump') |
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239 AddToDatabase('Sequences/STATION_AET/orig.7814.dump') |
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240 AddToDatabase('Sequences/STATION_AET/orig.7814.without.seq.dump') |
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241 |
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242 self.assertEqual(2, len(RunQuery('Sequences/Queries/7814.without.length.dump', []))) |
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243 self.assertEqual(2, len(RunQuery('Sequences/Queries/7814.without.seq.dump', []))) |
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244 self.assertEqual(2, len(RunQuery('Sequences/Queries/orig.7814.dump', []))) |
97 | 245 |
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246 def test_private_creator(self): |
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247 AddToDatabase('private-creator-wl.dump') |
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248 |
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249 self.assertEqual(1, len(RunQuery('private-creator-query.dump', []))) |
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250 |
97 | 251 |
98 | 252 @unittest.skip("This test requires to enable option 'FilterIssuerAet' in the sample worklist plugin") |
253 def test_filter_issuer_aet(self): | |
97 | 254 AddToDatabase('Sequences/STATION_AET/orig.7814.dump') |
98 | 255 AddToDatabase('Sequences/STATION_AET/orig.7814.other.station.dump') |
97 | 256 |
98 | 257 self.assertEqual(1, len(RunQuery('Sequences/Queries/7814.without.station.aet.dump', []))) |
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258 |
174 | 259 def test_filter_issuer_aet_from_lua(self): |
260 AddToDatabase('Sequences/STATION_AET/orig.7814.dump') # targeted at STATION_AET | |
261 AddToDatabase('Sequences/STATION_AET/orig.7814.other.station.dump') # targeted at ORTHANC_TEST | |
262 | |
263 self.assertEqual(2, len(RunQuery('Sequences/Queries/7814.without.station.aet.dump', []))) # query is not targeting any station -> match all | |
264 InstallLuaScript(ORTHANC, "\ | |
265 function IncomingWorklistRequestFilter(query, origin)\ | |
266 query['0040,0100'][1]['0040,0001'] = origin['RemoteAet']\ | |
267 return query\ | |
268 end"); | |
269 | |
270 self.assertEqual(1, len(RunQuery('Sequences/Queries/7814.without.station.aet.dump', []))) # now, query is targeting ORTHANCTEST -> match one | |
271 | |
272 | |
273 def test_remove_aet_from_query(self): | |
274 AddToDatabase('Sequences/NO_STATION_AET/orig.7814.other.station.dump') # targeted at ORTHANCTEST | |
275 | |
276 self.assertEqual(0, len(RunQuery('Sequences/Queries/orig.7814.dump', []))) # query is targeting STATION_AET -> will not match | |
277 InstallLuaScript(ORTHANC, "\ | |
278 function IncomingWorklistRequestFilter(query, origin)\ | |
279 query['0040,0100'][1]['0040,0001'] = nil\ | |
280 return query\ | |
281 end"); | |
282 self.assertEqual(1, len(RunQuery('Sequences/Queries/orig.7814.dump', []))) # query is targeting STATION_AET but, since we have removed this field, we should get 2 queries | |
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283 |
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284 def test_encodings(self): |
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285 # Check out ../../Database/Worklists/Encodings/database.dump |
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286 TEST = u'Test-éüäöòДΘĝדصķћ๛ネİ' |
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287 ENCODINGS = { |
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288 'Arabic' : [ 'ISO_IR 127' ], |
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289 'Ascii' : [ 'ISO_IR 6' ], # More accurately, ISO 646 |
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290 'Cyrillic' : [ 'ISO_IR 144' ], |
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291 'Greek' : [ 'ISO_IR 126' ], |
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292 'Hebrew' : [ 'ISO_IR 138' ], |
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293 'Japanese' : [ 'ISO_IR 13', 'shift-jis' ], |
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294 'Latin1' : [ 'ISO_IR 100' ], |
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295 'Latin2' : [ 'ISO_IR 101' ], |
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296 'Latin3' : [ 'ISO_IR 109' ], |
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297 'Latin4' : [ 'ISO_IR 110' ], |
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298 'Latin5' : [ 'ISO_IR 148' ], |
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299 'Thai' : [ 'ISO_IR 166', 'tis-620' ], |
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300 'Utf8' : [ 'ISO_IR 192' ], |
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301 } |
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302 |
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303 AddToDatabase('Encodings/database.dump') |
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304 |
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305 for (name, encoding) in ENCODINGS.items(): |
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306 self.assertEqual(name, DoPut(ORTHANC, '/tools/default-encoding', name)) |
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307 result = RunQuery('Encodings/query.dump', []) |
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308 |
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309 self.assertEqual(1, len(result)) |
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310 self.assertEqual(2, len(result[0])) |
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311 tags = ParseTopLevelTags(result[0]) |
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312 |
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313 if len(encoding) == 1: |
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314 encoded = TEST.encode(name, 'ignore') |
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315 else: |
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316 encoded = TEST.encode(encoding[1], 'ignore') |
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317 |
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318 self.assertEqual(encoding[0], tags['0008,0005']) |
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319 self.assertEqual(encoded, tags['0010,0010']) |
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320 |
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321 |
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322 def test_bitbucket_issue_49(self): |
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323 def Check(encoding, expectedEncoding, expectedContent): |
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324 DoPut(ORTHANC, '/tools/default-encoding', encoding) |
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325 result = RunQuery('Encodings/issue49-latin1.query', []) |
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326 self.assertEqual(1, len(result)) |
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327 self.assertEqual(2, len(result[0])) |
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328 tags = ParseTopLevelTags(result[0]) |
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329 self.assertEqual(expectedEncoding, tags['0008,0005']) |
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330 self.assertEqual(expectedContent, tags['0010,0010']) |
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331 |
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332 AddToDatabase('Encodings/issue49-latin1.wl') |
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333 Check('Ascii', 'ISO_IR 6', r'VANILL^LAURA^^^Mme') |
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334 Check('Utf8', 'ISO_IR 192', r'VANILLÉ^LAURA^^^Mme') |
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335 Check('Latin1', 'ISO_IR 100', u'VANILLÉ^LAURA^^^Mme'.encode('latin-1', 'ignore')) |
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336 |
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337 |
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338 def test_format(self): |
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339 DoPut(ORTHANC, '/tools/default-encoding', 'Latin1') |
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340 AddToDatabase('Dcmtk/Database/wklist1.dump') |
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341 |
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342 # Only behavior of Orthanc <= 1.9.4 |
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343 a = DoPost(ORTHANC, '/modalities/self/find-worklist', { |
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344 'PatientID' : '' |
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345 }) |
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346 self.assertEqual(1, len(a)) |
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347 self.assertEqual(2, len(a[0])) |
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348 self.assertEqual('AV35674', a[0]['PatientID']) |
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349 self.assertEqual('ISO_IR 100', a[0]['SpecificCharacterSet']) |
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350 |
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351 a = DoPost(ORTHANC, '/modalities/self/find-worklist', { |
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352 'Query' : { |
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353 'PatientID' : '' |
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354 } |
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355 }) |
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356 self.assertEqual(1, len(a)) |
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357 self.assertEqual(2, len(a[0])) |
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358 self.assertEqual('AV35674', a[0]['PatientID']) |
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359 self.assertEqual('ISO_IR 100', a[0]['SpecificCharacterSet']) |
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360 |
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361 a = DoPost(ORTHANC, '/modalities/self/find-worklist', { |
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362 'Query' : { |
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363 'PatientID' : '' |
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364 }, |
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365 'Short' : True |
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366 }) |
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367 self.assertEqual(1, len(a)) |
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368 self.assertEqual(2, len(a[0])) |
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369 self.assertEqual('AV35674', a[0]['0010,0020']) |
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370 self.assertEqual('ISO_IR 100', a[0]['0008,0005']) |
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371 |
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372 a = DoPost(ORTHANC, '/modalities/self/find-worklist', { |
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373 'Query' : { |
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374 'PatientID' : '' |
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375 }, |
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376 'Full' : True |
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377 }) |
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378 self.assertEqual(1, len(a)) |
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379 self.assertEqual(2, len(a[0])) |
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380 self.assertEqual('AV35674', a[0]['0010,0020']['Value']) |
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381 self.assertEqual('PatientID', a[0]['0010,0020']['Name']) |
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382 self.assertEqual('ISO_IR 100', a[0]['0008,0005']['Value']) |
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383 self.assertEqual('SpecificCharacterSet', a[0]['0008,0005']['Name']) |
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384 |
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385 |
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386 try: |
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387 print('\nStarting the tests...') |
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388 unittest.main(argv = [ sys.argv[0] ] + args.options) |
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389 |
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390 finally: |
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391 print('\nDone') |