Mercurial > hg > orthanc-tests
annotate Plugins/DicomWeb/Run.py @ 526:3112c7f2326e
merge
author | Sebastien Jodogne <s.jodogne@gmail.com> |
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date | Wed, 12 Apr 2023 12:01:23 +0200 |
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children | f96c023ce523 |
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1 #!/usr/bin/python |
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2 # -*- coding: utf-8 -*- |
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4 |
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5 # Orthanc - A Lightweight, RESTful DICOM Store |
73 | 6 # Copyright (C) 2012-2016 Sebastien Jodogne, Medical Physics |
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7 # Department, University Hospital of Liege, Belgium |
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8 # Copyright (C) 2017-2023 Osimis S.A., Belgium |
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9 # Copyright (C) 2021-2023 Sebastien Jodogne, ICTEAM UCLouvain, Belgium |
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10 # |
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11 # This program is free software: you can redistribute it and/or |
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12 # modify it under the terms of the GNU General Public License as |
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13 # published by the Free Software Foundation, either version 3 of the |
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14 # License, or (at your option) any later version. |
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15 # |
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16 # This program is distributed in the hope that it will be useful, but |
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17 # WITHOUT ANY WARRANTY; without even the implied warranty of |
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18 # MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU |
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19 # General Public License for more details. |
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20 # |
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21 # You should have received a copy of the GNU General Public License |
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22 # along with this program. If not, see <http://www.gnu.org/licenses/>. |
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23 |
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24 |
85 | 25 |
26 # You must add the following to the configuration file: | |
27 # | |
28 # "DicomWeb" : { | |
29 # "Servers" : { | |
30 # "sample" : [ "http://localhost:8042/dicom-web/", "alice", "orthanctest" ] | |
31 # } | |
32 # } | |
33 | |
34 | |
35 | |
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36 import copy |
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37 import os |
33 | 38 import pprint |
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39 import sys |
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40 import argparse |
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41 import unittest |
83 | 42 import re |
304 | 43 from PIL import ImageChops |
44 | |
33 | 45 from DicomWeb import * |
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46 |
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47 sys.path.append(os.path.join(os.path.dirname(__file__), '..', '..', 'Tests')) |
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48 from Toolbox import * |
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49 |
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50 |
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51 ## |
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52 ## Parse the command-line arguments |
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53 ## |
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54 |
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55 parser = argparse.ArgumentParser(description = 'Run the integration tests for the DICOMweb plugin.') |
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56 |
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57 parser.add_argument('--server', |
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58 default = 'localhost', |
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59 help = 'Address of the Orthanc server to test') |
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60 parser.add_argument('--rest', |
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61 type = int, |
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62 default = 8042, |
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63 help = 'Port to the REST API') |
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64 parser.add_argument('--username', |
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65 default = 'alice', |
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66 help = 'Username to the REST API') |
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67 parser.add_argument('--password', |
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68 default = 'orthanctest', |
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69 help = 'Password to the REST API') |
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70 parser.add_argument('--wado', |
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71 default = '/wado', |
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72 help = 'Path to the WADO API') |
33 | 73 parser.add_argument('--dicomweb', |
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74 default = '/dicom-web/', |
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75 help = 'Path to the DICOMweb API') |
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76 parser.add_argument('--force', help = 'Do not warn the user', |
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77 action = 'store_true') |
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78 parser.add_argument('options', metavar = 'N', nargs = '*', |
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79 help='Arguments to Python unittest') |
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80 |
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81 args = parser.parse_args() |
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82 |
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83 |
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84 ## |
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85 ## Configure the testing context |
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86 ## |
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87 |
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88 if not args.force: |
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89 print(""" |
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90 WARNING: This test will remove all the content of your |
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91 Orthanc instance running on %s! |
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92 |
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93 Are you sure ["yes" to go on]?""" % args.server) |
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94 |
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95 if sys.stdin.readline().strip() != 'yes': |
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96 print('Aborting...') |
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97 exit(0) |
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98 |
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99 |
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100 ORTHANC = DefineOrthanc(server = args.server, |
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101 username = args.username, |
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102 password = args.password, |
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103 restPort = args.rest) |
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104 |
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105 |
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106 ## |
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107 ## The tests |
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108 ## |
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109 |
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110 |
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111 def UploadAndGetWadoPath(dicom): |
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112 i = UploadInstance(ORTHANC, dicom) ['ID'] |
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113 study = DoGet(ORTHANC, '/instances/%s/tags?simplify' % i) ['StudyInstanceUID'] |
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114 series = DoGet(ORTHANC, '/instances/%s/tags?simplify' % i) ['SeriesInstanceUID'] |
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115 instance = DoGet(ORTHANC, '/instances/%s/tags?simplify' % i) ['SOPInstanceUID'] |
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116 return '/studies/%s/series/%s/instances/%s' % (study, series, instance) |
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117 |
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118 |
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119 |
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120 class Orthanc(unittest.TestCase): |
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121 def setUp(self): |
83 | 122 if (sys.version_info >= (3, 0)): |
123 # Remove annoying warnings about unclosed socket in Python 3 | |
124 import warnings | |
125 warnings.simplefilter("ignore", ResourceWarning) | |
126 | |
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127 #print("In test: ", self._testMethodName) |
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128 |
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129 DropOrthanc(ORTHANC) |
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130 |
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131 def test_wado_dicom(self): |
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132 UploadInstance(ORTHANC, 'Brainix/Flair/IM-0001-0001.dcm') |
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133 |
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134 SIZE = 169478 |
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135 INSTANCE = '1.3.46.670589.11.0.0.11.4.2.0.8743.5.5396.2006120114314079549' |
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136 SERIES = '1.3.46.670589.11.0.0.11.4.2.0.8743.5.5396.2006120114285654497' |
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137 STUDY = '2.16.840.1.113669.632.20.1211.10000357775' |
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138 |
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139 self.assertRaises(Exception, lambda: DoGet(ORTHANC, args.wado)) |
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140 self.assertRaises(Exception, lambda: DoGet(ORTHANC, args.wado + '?requestType=WADO')) |
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141 self.assertRaises(Exception, lambda: DoGet(ORTHANC, args.wado + '?objectUID=%s' % INSTANCE)) |
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142 |
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143 dicom = DoGet(ORTHANC, args.wado + '?contentType=application/dicom&requestType=WADO&objectUID=%s' % INSTANCE) |
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144 self.assertEqual(SIZE, len(dicom)) |
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145 |
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146 dicom = DoGet(ORTHANC, args.wado + '?contentType=application/dicom&requestType=WADO&objectUID=%s&seriesUID=%s' % (INSTANCE, SERIES)) |
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147 self.assertEqual(SIZE, len(dicom)) |
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148 |
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149 dicom = DoGet(ORTHANC, args.wado + '?contentType=application/dicom&requestType=WADO&objectUID=%s&seriesUID=%s&studyUID=%s' % (INSTANCE, SERIES, STUDY)) |
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150 self.assertEqual(SIZE, len(dicom)) |
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151 |
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152 dicom = DoGet(ORTHANC, args.wado + '?contentType=application/dicom&requestType=WADO&objectUID=%s&seriesUID=%s' % (INSTANCE, SERIES)) |
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153 self.assertEqual(SIZE, len(dicom)) |
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154 |
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155 dicom = DoGet(ORTHANC, args.wado + '?contentType=application/dicom&requestType=WADO&objectUID=%s&studyUID=%s' % (INSTANCE, STUDY)) |
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156 self.assertEqual(SIZE, len(dicom)) |
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157 |
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158 self.assertRaises(Exception, lambda: DoGet(ORTHANC, args.wado + '?requestType=WADO&objectUID=%s&seriesUID=nope' % INSTANCE)) |
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159 self.assertRaises(Exception, lambda: DoGet(ORTHANC, args.wado + '?requestType=WADO&objectUID=%s&studyUID=nope' % INSTANCE)) |
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160 self.assertRaises(Exception, lambda: DoGet(ORTHANC, args.wado + '?requestType=WADO&objectUID=%s&seriesUID=nope&studyUID=nope' % INSTANCE)) |
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161 |
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162 def test_wado_image(self): |
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163 UploadInstance(ORTHANC, 'Phenix/IM-0001-0001.dcm') |
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164 INSTANCE = '1.2.840.113704.7.1.1.6632.1127829031.2' |
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165 |
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166 im = GetImage(ORTHANC, args.wado + '?requestType=WADO&objectUID=%s' % INSTANCE) |
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167 self.assertEqual('JPEG', im.format) |
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168 self.assertEqual('L', im.mode) |
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169 self.assertEqual(512, im.size[0]) |
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170 self.assertEqual(358, im.size[1]) |
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171 |
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172 im = GetImage(ORTHANC, args.wado + '?contentType=image/jpg&requestType=WADO&objectUID=%s' % INSTANCE) |
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173 self.assertEqual('JPEG', im.format) |
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174 |
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175 im = GetImage(ORTHANC, args.wado + '?contentType=image/png&requestType=WADO&objectUID=%s' % INSTANCE) |
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176 self.assertEqual('PNG', im.format) |
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177 self.assertEqual('L', im.mode) |
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178 self.assertEqual(512, im.size[0]) |
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179 self.assertEqual(358, im.size[1]) |
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180 |
33 | 181 def test_stow(self): |
182 self.assertEqual(0, len(DoGet(ORTHANC, '/instances'))) | |
183 SendStow(ORTHANC, args.dicomweb + '/studies', GetDatabasePath('Phenix/IM-0001-0001.dcm')) | |
184 self.assertEqual(1, len(DoGet(ORTHANC, '/instances'))) | |
185 a = SendStow(ORTHANC, args.dicomweb + '/studies', GetDatabasePath('Phenix/IM-0001-0001.dcm')) | |
186 self.assertEqual(1, len(DoGet(ORTHANC, '/instances'))) | |
187 | |
227
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188 self.assertEqual(4, len(a)) |
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189 |
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190 # Specific character set |
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191 self.assertTrue('00080005' in a) |
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192 self.assertEqual('CS', a['00080005']['vr']) |
33 | 193 |
194 self.assertTrue(a['00081190']['Value'][0].endswith('studies/2.16.840.1.113669.632.20.1211.10000098591')) | |
227
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195 self.assertEqual('UR', a['00081190']['vr']) |
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196 |
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197 self.assertFalse('Value' in a['00081198']) # No error => empty sequence |
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198 self.assertEqual('SQ', a['00081198']['vr']) |
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199 |
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200 self.assertEqual(1, len(a['00081199']['Value'])) # 1 success |
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201 self.assertEqual('SQ', a['00081199']['vr']) |
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202 |
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203 b = a['00081199']['Value'][0] |
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204 |
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205 # Referenced SOP class UID |
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206 self.assertEqual('UI', b['00081150']['vr']) |
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207 self.assertEqual(1, len(b['00081150']['Value'])) |
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208 self.assertEqual('1.2.840.10008.5.1.4.1.1.2', b['00081150']['Value'][0]) |
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209 |
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210 # Referenced SOP instance UID |
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211 self.assertEqual('UI', b['00081155']['vr']) |
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212 self.assertEqual(1, len(b['00081155']['Value'])) |
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213 self.assertEqual('1.2.840.113704.7.1.1.6632.1127829031.2', b['00081155']['Value'][0]) |
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214 |
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215 # Retrieve URL |
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216 self.assertEqual('UR', b['00081190']['vr']) |
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217 self.assertEqual(1, len(b['00081190']['Value'])) |
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218 self.assertTrue(b['00081190']['Value'][0]. |
33 | 219 endswith('series/1.2.840.113704.1.111.5692.1127828999.2/instances/1.2.840.113704.7.1.1.6632.1127829031.2')) |
220 | |
83 | 221 # Remove the "http://localhost:8042" prefix |
222 url = a['00081190']['Value'][0] | |
223 url = re.sub(r'(http|https)://[^/]+(/.*)', r'\2', url) | |
224 | |
367
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225 # Get the content-length of all the multiparts of this WADO-RS |
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226 # request (prevent transcoding by setting transfer-syntax to |
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227 # "*", necessary since release 1.5 of the DICOMweb plugin) |
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228 b = DoGet(ORTHANC, url, headers = { |
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229 'Accept' : 'multipart/related;type=application/dicom;transfer-syntax=*' |
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230 }).decode('utf-8', 'ignore') |
83 | 231 parts = re.findall(r'^Content-Length:\s*(\d+)\s*', b, re.IGNORECASE | re.MULTILINE) |
232 self.assertEqual(1, len(parts)) | |
233 self.assertEqual(os.path.getsize(GetDatabasePath('Phenix/IM-0001-0001.dcm')), int(parts[0])) | |
33 | 234 |
227
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235 |
84 | 236 def test_server_get(self): |
277 | 237 try: |
238 DoDelete(ORTHANC, '/dicom-web/servers/google') # If "AllWindowsStart.sh" is used | |
239 except: | |
240 pass | |
241 | |
388
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242 try: |
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243 DoDelete(ORTHANC, '/dicom-web/servers/hello') # If "test_add_server" fails |
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244 except: |
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245 pass |
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246 |
84 | 247 UploadInstance(ORTHANC, 'Knee/T1/IM-0001-0001.dcm') |
248 | |
249 self.assertEqual(1, len(DoGet(ORTHANC, '/dicom-web/servers'))) | |
250 self.assertTrue('sample' in DoGet(ORTHANC, '/dicom-web/servers')) | |
251 | |
129 | 252 serversReadback = DoGet(ORTHANC, '/dicom-web/servers?expand') |
253 self.assertEqual('http://localhost:8042/dicom-web/', serversReadback['sample']['Url']) | |
254 self.assertEqual('alice', serversReadback['sample']['Username']) | |
255 | |
84 | 256 sample = DoGet(ORTHANC, '/dicom-web/servers/sample') |
244 | 257 self.assertEqual(5, len(sample)) |
84 | 258 self.assertTrue('stow' in sample) |
259 self.assertTrue('retrieve' in sample) | |
260 self.assertTrue('get' in sample) | |
244 | 261 self.assertTrue('wado' in sample) # New in 0.7 |
262 self.assertTrue('qido' in sample) # New in 0.7 | |
84 | 263 |
264 # application/dicom+xml | |
131
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265 self.assertEqual(2, len(re.findall('^--', DoGet(ORTHANC, '/dicom-web/studies', |
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266 headers = { 'Accept' : 'application/dicom+xml' }), |
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267 re.MULTILINE))) |
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268 self.assertEqual(2, len(re.findall('^--', DoPost |
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269 (ORTHANC, '/dicom-web/servers/sample/get', |
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270 { 'Uri' : '/studies', |
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271 'HttpHeaders' : { 'Accept' : 'application/dicom+xml' } |
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272 }), re.MULTILINE))) |
84 | 273 |
274 # application/dicom+json | |
131
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275 self.assertEqual(1, len(DoGet(ORTHANC, '/dicom-web/studies', |
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276 headers = { 'Accept' : 'application/dicom+json' }))) |
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277 self.assertEqual(1, len(DoPost(ORTHANC, '/dicom-web/servers/sample/get', |
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278 { 'Uri' : '/studies', |
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279 'HttpHeaders' : { 'Accept' : 'application/dicom+json' }}))) |
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280 |
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281 # application/json |
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282 self.assertEqual(1, len(DoGet(ORTHANC, '/dicom-web/studies', |
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283 headers = { 'Accept' : 'application/json' }))) |
84 | 284 self.assertEqual(1, len(DoPost(ORTHANC, '/dicom-web/servers/sample/get', |
285 { 'Uri' : '/studies', | |
286 'HttpHeaders' : { 'Accept' : 'application/json' }}))) | |
287 | |
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288 # application/dicom+json is the default as of OrthancDicomWeb-0.5 |
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289 self.assertEqual(1, len(DoGet(ORTHANC, '/dicom-web/studies'))) |
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290 self.assertEqual(1, len(DoPost(ORTHANC, '/dicom-web/servers/sample/get', |
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291 { 'Uri' : '/studies' }))) |
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292 |
84 | 293 |
294 def test_server_stow(self): | |
295 UploadInstance(ORTHANC, 'Knee/T1/IM-0001-0001.dcm') | |
296 | |
297 self.assertRaises(Exception, lambda: | |
298 DoPost(ORTHANC, '/dicom-web/servers/sample/stow', | |
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299 { 'Resources' : [ 'nope' ], |
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300 'Synchronous' : True })) # inexisting resource |
84 | 301 |
499 | 302 l = 3 # For >= 1.10.1 |
303 | |
304 # study | |
305 r = DoPost(ORTHANC, '/dicom-web/servers/sample/stow', | |
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306 { 'Resources' : [ '0a9b3153-2512774b-2d9580de-1fc3dcf6-3bd83918' ], |
499 | 307 'Synchronous' : True }) |
308 | |
309 self.assertEqual(l, len(r)) | |
310 self.assertEqual("0a9b3153-2512774b-2d9580de-1fc3dcf6-3bd83918", r['Resources']['Studies'][0]) | |
84 | 311 |
499 | 312 # series |
313 r = DoPost(ORTHANC, '/dicom-web/servers/sample/stow', | |
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314 { 'Resources' : [ '6de73705-c4e65c1b-9d9ea1b5-cabcd8e7-f15e4285' ], |
499 | 315 'Synchronous' : True }) |
316 self.assertEqual(l, len(r)) | |
317 self.assertEqual("6de73705-c4e65c1b-9d9ea1b5-cabcd8e7-f15e4285", r['Resources']['Series'][0]) | |
84 | 318 |
499 | 319 # instances |
320 r = DoPost(ORTHANC, '/dicom-web/servers/sample/stow', | |
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321 { 'Resources' : [ 'c8df6478-d7794217-0f11c293-a41237c9-31d98357' ], |
499 | 322 'Synchronous' : True }) |
323 self.assertEqual(l, len(r)) | |
324 self.assertEqual("c8df6478-d7794217-0f11c293-a41237c9-31d98357", r['Resources']['Instances'][0]) | |
84 | 325 |
499 | 326 # altogether |
327 r = DoPost(ORTHANC, '/dicom-web/servers/sample/stow', | |
84 | 328 { 'Resources' : [ |
329 'ca29faea-b6a0e17f-067743a1-8b778011-a48b2a17', | |
330 '0a9b3153-2512774b-2d9580de-1fc3dcf6-3bd83918', | |
331 '6de73705-c4e65c1b-9d9ea1b5-cabcd8e7-f15e4285', | |
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332 'c8df6478-d7794217-0f11c293-a41237c9-31d98357' ], |
499 | 333 'Synchronous' : True }) |
510 | 334 # pprint.pprint(r) |
499 | 335 self.assertEqual(l, len(r)) |
336 self.assertEqual("ca29faea-b6a0e17f-067743a1-8b778011-a48b2a17", r['Resources']['Patients'][0]) | |
337 self.assertEqual("0a9b3153-2512774b-2d9580de-1fc3dcf6-3bd83918", r['Resources']['Studies'][0]) | |
338 self.assertEqual("6de73705-c4e65c1b-9d9ea1b5-cabcd8e7-f15e4285", r['Resources']['Series'][0]) | |
339 self.assertEqual("c8df6478-d7794217-0f11c293-a41237c9-31d98357", r['Resources']['Instances'][0]) | |
340 | |
84 | 341 |
342 | |
343 def test_server_retrieve(self): | |
244 | 344 COUNT = 'ReceivedInstancesCount' |
345 #COUNT = 'Instances' # In version <= 0.6 | |
346 | |
84 | 347 UploadInstance(ORTHANC, 'Knee/T1/IM-0001-0001.dcm') |
348 UploadInstance(ORTHANC, 'Knee/T1/IM-0001-0002.dcm') | |
349 UploadInstance(ORTHANC, 'Knee/T2/IM-0001-0001.dcm') | |
350 | |
351 self.assertRaises(Exception, lambda: | |
352 DoPost(ORTHANC, '/dicom-web/servers/sample/retrieve', | |
353 { 'Resources' : [ { 'Study' : 'nope' } ]})) # inexisting resource | |
354 | |
355 t = DoPost(ORTHANC, '/dicom-web/servers/sample/retrieve', | |
356 { 'Resources' : [ { 'Study' : '2.16.840.1.113669.632.20.121711.10000160881' } ] }) | |
244 | 357 self.assertEqual(3, int(t[COUNT])) |
84 | 358 |
359 # Missing "Study" field | |
360 self.assertRaises(Exception, lambda: | |
361 DoPost(ORTHANC, '/dicom-web/servers/sample/retrieve', | |
362 { 'Resources' : [ { 'Series' : '1.3.46.670589.11.17521.5.0.3124.2008081908564160709' } ]})) | |
363 | |
364 t = DoPost(ORTHANC, '/dicom-web/servers/sample/retrieve', | |
365 { 'Resources' : [ { 'Study' : '2.16.840.1.113669.632.20.121711.10000160881', | |
366 'Series' : '1.3.46.670589.11.17521.5.0.3124.2008081908564160709' } ] }) | |
244 | 367 self.assertEqual(2, int(t[COUNT])) |
84 | 368 |
369 t = DoPost(ORTHANC, '/dicom-web/servers/sample/retrieve', | |
370 { 'Resources' : [ { 'Study' : '2.16.840.1.113669.632.20.121711.10000160881', | |
371 'Series' : '1.3.46.670589.11.17521.5.0.3124.2008081909090037350' } ] }) | |
244 | 372 self.assertEqual(1, int(t[COUNT])) |
84 | 373 |
374 t = DoPost(ORTHANC, '/dicom-web/servers/sample/retrieve', | |
375 { 'Resources' : [ { 'Study' : '2.16.840.1.113669.632.20.121711.10000160881', | |
376 'Series' : '1.3.46.670589.11.17521.5.0.3124.2008081909090037350' }, | |
377 { 'Study' : '2.16.840.1.113669.632.20.121711.10000160881', | |
378 'Series' : '1.3.46.670589.11.17521.5.0.3124.2008081908564160709' } ] }) | |
244 | 379 self.assertEqual(3, int(t[COUNT])) |
84 | 380 |
381 t = DoPost(ORTHANC, '/dicom-web/servers/sample/retrieve', | |
382 { 'Resources' : [ { 'Study' : '2.16.840.1.113669.632.20.121711.10000160881', | |
383 'Series' : '1.3.46.670589.11.17521.5.0.3124.2008081909090037350', | |
384 'Instance' : '1.3.46.670589.11.17521.5.0.3124.2008081909113806560' } ] }) | |
244 | 385 self.assertEqual(1, int(t[COUNT])) |
84 | 386 |
387 | |
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388 def test_bitbucket_issue_53(self): |
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389 # DICOMWeb plugin support for "limit" and "offset" parameters in QIDO-RS |
319 | 390 # https://bugs.orthanc-server.com/show_bug.cgi?id=53 |
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391 |
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392 UploadInstance(ORTHANC, 'Brainix/Flair/IM-0001-0001.dcm') |
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393 UploadInstance(ORTHANC, 'Knee/T1/IM-0001-0001.dcm') |
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394 |
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395 brainix = '2.16.840.1.113669.632.20.1211.10000357775' |
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396 knee = '2.16.840.1.113669.632.20.121711.10000160881' |
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397 |
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398 a = DoGet(ORTHANC, '/dicom-web/studies', |
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399 headers = { 'accept' : 'application/json' }) |
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400 self.assertEqual(2, len(a)) |
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401 |
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402 b = [] |
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403 a = DoGet(ORTHANC, '/dicom-web/studies?limit=1', |
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404 headers = { 'accept' : 'application/json' }) |
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405 self.assertEqual(1, len(a)) |
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406 b.append(a[0]['0020000D']['Value'][0]) |
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407 |
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408 a = DoGet(ORTHANC, '/dicom-web/studies?limit=1&offset=1', |
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409 headers = { 'accept' : 'application/json' }) |
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410 self.assertEqual(1, len(a)) |
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411 b.append(a[0]['0020000D']['Value'][0]) |
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412 |
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413 self.assertTrue(brainix in b) |
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414 self.assertTrue(knee in b) |
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415 |
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416 |
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417 def test_bitbucket_issue_111(self): |
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418 # Wrong serialization of empty values |
319 | 419 # https://bugs.orthanc-server.com/show_bug.cgi?id=111 |
420 # https://bitbucket.org/sjodogne/orthanc-dicomweb/issues/3 | |
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421 |
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422 # According to the standard, section F.2.5 |
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423 # (http://dicom.nema.org/medical/dicom/current/output/chtml/part18/sect_F.2.5.html), |
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424 # null values behave as follows: If an attribute is present in |
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425 # DICOM but empty (i.e., Value Length is 0), it shall be |
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426 # preserved in the DICOM JSON attribute object containing no |
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427 # "Value", "BulkDataURI" or "InlineBinary". |
319 | 428 # https://bugs.orthanc-server.com/show_bug.cgi?id=111 |
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429 |
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430 UploadInstance(ORTHANC, 'Issue111.dcm') |
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431 |
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432 # Test WADO-RS |
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433 a = DoGet(ORTHANC, '/dicom-web/studies/1.2.276.0.7230010.3.1.2.8323329.30185.1551199973.371589/metadata') |
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434 self.assertEqual(1, len(a)) |
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435 self.assertTrue('00080050' in a[0]) # AccessionNumber is null |
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436 self.assertEqual(1, len(a[0]['00080050'])) # 'vr' is the only field to be present |
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437 self.assertEqual('SH', a[0]['00080050']['vr']) |
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438 |
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439 # Test QIDO-RS |
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440 a = DoGet(ORTHANC, '/dicom-web/studies') |
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441 self.assertEqual(1, len(a)) |
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442 self.assertTrue('00080050' in a[0]) # AccessionNumber is null |
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443 self.assertEqual(1, len(a[0]['00080050'])) # 'vr' is the only field to be present |
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444 self.assertEqual('SH', a[0]['00080050']['vr']) |
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445 |
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446 |
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447 def test_wado_hierarchy(self): |
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448 def CheckJson(uri, headers = {}): |
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449 with open(GetDatabasePath('DummyCT.json'), 'r') as f: |
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450 expected = json.loads(f.read()) |
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451 actual = DoGet(ORTHANC, uri, headers) |
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452 self.assertEqual(1, len(actual)) |
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453 AssertAlmostEqualRecursive(self, expected, actual[0]) |
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454 |
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455 UploadInstance(ORTHANC, 'DummyCT.dcm') |
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456 study = '1.2.840.113619.2.176.2025.1499492.7391.1171285944.390' |
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457 series = '1.2.840.113619.2.176.2025.1499492.7391.1171285944.394' |
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458 instance = '1.2.840.113619.2.176.2025.1499492.7040.1171286242.109' |
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459 |
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460 URI = '/dicom-web/studies/%s/series/%s/instances/%s/metadata' |
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461 self.assertRaises(Exception, lambda: DoGet(ORTHANC, URI % (study, series, instance), |
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462 headers = { 'accept' : 'application/nope' })) |
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463 |
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464 CheckJson(URI % (study, series, instance), headers = { 'accept' : 'application/dicom+json' }) |
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465 CheckJson('/dicom-web/studies/%s/series/%s/metadata' % (study, series)) |
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466 CheckJson('/dicom-web/studies/%s/metadata' % study) |
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467 |
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468 self.assertRaises(Exception, lambda: DoGet(ORTHANC, URI % ('nope', series, instance))) |
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469 self.assertRaises(Exception, lambda: DoGet(ORTHANC, URI % (study, 'nope', instance))) |
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470 self.assertRaises(Exception, lambda: DoGet(ORTHANC, URI % (study, series, 'nope'))) |
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471 self.assertRaises(Exception, lambda: DoGet(ORTHANC, '/dicom-web/studies/%s/series/%s/metadata' % ('nope', series))) |
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472 self.assertRaises(Exception, lambda: DoGet(ORTHANC, '/dicom-web/studies/%s/series/%s/metadata' % (study, 'nope'))) |
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473 self.assertRaises(Exception, lambda: DoGet(ORTHANC, '/dicom-web/studies/%s/metadata' % 'nope')) |
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474 |
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475 |
228 | 476 def test_wado_pixel_data(self): |
477 orthanc = UploadInstance(ORTHANC, 'Issue29.dcm') ['ID'] | |
478 a = DoGet(ORTHANC, '/dicom-web/instances') | |
479 self.assertEqual(1, len(a)) | |
480 url = a[0]['00081190']['Value'][0] | |
481 | |
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482 prefix = 'http://%s:%s' % (args.server, args.rest) |
228 | 483 self.assertTrue(url.startswith(prefix)) |
484 | |
485 b = DoGet(ORTHANC, url[len(prefix):] + '/metadata') | |
486 self.assertEqual('OB', b[0]['7FE00010']['vr']) | |
487 self.assertEqual(2, len(b[0]['7FE00010'])) | |
488 self.assertTrue('BulkDataURI' in b[0]['7FE00010']) | |
489 | |
490 url = b[0]['7FE00010']['BulkDataURI'] | |
491 self.assertTrue(url.startswith(prefix)) | |
492 | |
493 p = DoGetMultipart(ORTHANC, url[len(prefix):]) | |
494 | |
495 self.assertEqual(2, len(p)) # There are 2 fragments in this image | |
496 self.assertEqual(4, len(p[0])) | |
497 self.assertEqual(114486, len(p[1])) | |
498 | |
499 | |
500 def test_wado_hierarchy_bulk(self): | |
222
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501 def CheckBulk(value, bulk): |
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502 self.assertEqual(2, len(value)) |
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503 self.assertTrue('BulkDataURI' in value) |
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504 self.assertTrue('vr' in value) |
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505 self.assertEqual(value['BulkDataURI'], bulk) |
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506 |
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507 orthanc = UploadInstance(ORTHANC, 'PrivateTags.dcm') ['ID'] |
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508 study = '1.2.840.113619.2.115.147416.1094281639.0.29' |
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509 series = '1.2.840.113619.2.115.147416.1094281639.0.30' |
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510 sop = '1.2.840.113619.2.115.147416.1094281639.0.38' |
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511 |
228 | 512 # WARNING: This test will fail on Orthanc <= 1.5.5, because |
319 | 513 # the following fix was not included yet: |
514 # https://hg.orthanc-server.com/orthanc/rev/b88937ef597b | |
228 | 515 |
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516 a = DoGet(ORTHANC, '/dicom-web/studies/%s/metadata' % study) |
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517 self.assertEqual(1, len(a)) |
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518 |
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519 BASE_URI = '/dicom-web/studies/%s/series/%s/instances/%s/bulk' % (study, series, sop) |
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520 BASE_URL = 'http://%s:%s%s' % (args.server, args.rest, BASE_URI) |
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521 |
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522 self.assertEqual(2, len(a[0]['60031010']['Value'])) |
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523 CheckBulk(a[0]['60031010']['Value'][0]['60031011'], '%s/60031010/1/60031011' % BASE_URL) |
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524 CheckBulk(a[0]['60031010']['Value'][1]['60031011'], '%s/60031010/2/60031011' % BASE_URL) |
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525 CheckBulk(a[0]['7FE00010'], '%s/7fe00010' % BASE_URL) |
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526 |
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527 b = DoGetRaw(ORTHANC, '/instances/%s/content/6003-1010/0/6003-1011' % orthanc) [1] |
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528 c = DoGetMultipart(ORTHANC, '%s/60031010/1/60031011' % BASE_URI) |
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529 |
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530 self.assertEqual(12288, len(b)) |
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531 self.assertEqual(1, len(c)) |
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532 self.assertEqual(b, c[0]) |
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533 |
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534 |
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535 def test_bitbucket_issue_112(self): |
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536 # Wrong serialization of number values |
319 | 537 # https://bugs.orthanc-server.com/show_bug.cgi?id=112 |
222
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538 # https://bitbucket.org/sjodogne/orthanc-dicomweb/issues/4/ |
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539 |
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540 UploadInstance(ORTHANC, 'DummyCT.dcm') |
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541 study = '1.2.840.113619.2.176.2025.1499492.7391.1171285944.390' |
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542 |
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543 # This is the WADO-RS testing |
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544 a = DoGet(ORTHANC, '/dicom-web/studies/%s/metadata' % study) |
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545 self.assertEqual(1, len(a)) |
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546 self.assertEqual('IS', a[0]['00180091']['vr']) # EchoTrainLength |
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547 |
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548 if (sys.version_info >= (3, 0)): |
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549 types = (int) |
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550 else: |
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551 types = (int, long) |
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552 |
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553 b = a[0]['00180091']['Value'][0] |
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554 self.assertTrue(isinstance(b, types)) |
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555 self.assertEqual(10, b) |
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556 |
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557 # This is the QIDO-RS testing |
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558 a = DoGet(ORTHANC, '/dicom-web/studies') |
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559 self.assertEqual(1, len(a)) |
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560 self.assertEqual('IS', a[0]['00201208']['vr']) # Number of Study Related Instances |
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561 |
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562 b = a[0]['00201208']['Value'][0] |
226
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563 self.assertTrue(isinstance(b, types)) |
222
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564 self.assertEqual(1, b) |
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565 |
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566 |
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567 def test_bitbucket_issue_113(self): |
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568 # Wrong serialization of PN VR |
319 | 569 # https://bugs.orthanc-server.com/show_bug.cgi?id=113 |
224
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570 # https://bitbucket.org/sjodogne/orthanc-dicomweb/issues/2/ |
314 | 571 |
572 # Make sure UTF-8 encoding is used | |
573 self.assertEqual('Utf8', DoPut(ORTHANC, '/tools/default-encoding', 'Utf8')) | |
224
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574 |
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575 UploadInstance(ORTHANC, 'Encodings/DavidClunie/SCSX1') |
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576 study = '1.3.6.1.4.1.5962.1.2.0.1175775771.5711.0' |
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577 |
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578 # This is the WADO-RS testing |
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579 a = DoGet(ORTHANC, '/dicom-web/studies/%s/metadata' % study) |
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580 self.assertEqual(1, len(a)) |
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581 |
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582 pn = a[0]['00100010'] # Patient name |
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583 self.assertEqual('PN', pn['vr']) |
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584 self.assertEqual(1, len(pn['Value'])) |
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585 self.assertEqual('Wang^XiaoDong', pn['Value'][0]['Alphabetic']) |
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586 self.assertEqual(u'王^小東', pn['Value'][0]['Ideographic']) |
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587 |
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588 # This is the QIDO-RS testing |
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589 a = DoGet(ORTHANC, '/dicom-web/studies') |
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590 self.assertEqual(1, len(a)) |
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591 |
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592 pn = a[0]['00100010'] # Patient name |
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593 self.assertEqual('PN', pn['vr']) |
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594 self.assertEqual(1, len(pn['Value'])) |
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595 self.assertEqual('Wang^XiaoDong', pn['Value'][0]['Alphabetic']) |
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596 self.assertEqual(u'王^小東', pn['Value'][0]['Ideographic']) |
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597 |
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598 |
225 | 599 def test_bitbucket_issue_96(self): |
600 # WADO-RS RetrieveFrames rejects valid accept headers | |
319 | 601 # https://bugs.orthanc-server.com/show_bug.cgi?id=96 |
225 | 602 # https://bitbucket.org/sjodogne/orthanc-dicomweb/issues/5/ |
603 | |
228 | 604 UploadInstance(ORTHANC, 'Brainix/Epi/IM-0001-0001.dcm') |
225 | 605 |
606 a = DoGet(ORTHANC, '/dicom-web/instances') | |
607 self.assertEqual(1, len(a)) | |
228 | 608 self.assertEqual(256, a[0]['00280010']['Value'][0]) # Rows |
609 self.assertEqual(256, a[0]['00280011']['Value'][0]) # Columns | |
610 self.assertEqual(16, a[0]['00280100']['Value'][0]) # Bits allocated | |
226
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611 |
225 | 612 url = a[0]['00081190']['Value'][0] |
613 | |
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614 prefix = 'http://%s:%s' % (args.server, args.rest) |
225 | 615 self.assertTrue(url.startswith(prefix)) |
616 uri = url[len(prefix):] | |
617 | |
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618 self.assertRaises(Exception, lambda: DoGetMultipart(ORTHANC, '%s/frames/%d' % (uri, 0))) |
228 | 619 self.assertRaises(Exception, lambda: DoGetMultipart(ORTHANC, '%s/frames/%d' % (uri, 2))) |
620 | |
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621 b = DoGetMultipart(ORTHANC, '%s/frames/%d' % (uri, 1)) |
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622 self.assertEqual(1, len(b)) |
228 | 623 self.assertEqual(256 * 256 * 2, len(b[0])) |
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624 self.assertEqual('ce394eb4d4de4eeef348436108101f3b', ComputeMD5(b[0])) |
225 | 625 |
228 | 626 c = DoGetMultipart(ORTHANC, '%s/frames/%d' % (uri, 1), |
226
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627 headers = { 'Accept' : 'multipart/related; type=application/octet-stream' }) |
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628 self.assertEqual(1, len(c)) |
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629 self.assertEqual(b[0], c[0]) |
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630 self.assertEqual('ce394eb4d4de4eeef348436108101f3b', ComputeMD5(c[0])) |
226
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631 |
228 | 632 c = DoGetMultipart(ORTHANC, '%s/frames/%d' % (uri, 1), |
226
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633 headers = { 'Accept' : 'multipart/related; type="application/octet-stream"' }) |
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634 self.assertEqual(1, len(c)) |
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635 self.assertEqual(b[0], c[0]) |
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636 self.assertEqual('ce394eb4d4de4eeef348436108101f3b', ComputeMD5(c[0])) |
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637 |
228 | 638 self.assertRaises(Exception, lambda: DoGetMultipart(ORTHANC, '%s/frames/%d' % (uri, 1), |
639 headers = { 'Accept' : 'multipart/related; type="nope"' })) | |
640 | |
641 self.assertRaises(Exception, lambda: DoGetMultipart(ORTHANC, '%s/frames/%d' % (uri, 1), | |
642 headers = { 'Accept' : 'multipart/related; type=nope' })) | |
643 | |
644 self.assertRaises(Exception, lambda: DoGetMultipart(ORTHANC, '%s/frames/%d' % (uri, 1), | |
645 headers = { 'Accept' : 'nope' })) | |
646 | |
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647 |
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648 def test_qido_fields(self): |
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649 UploadInstance(ORTHANC, 'DummyCT.dcm') |
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650 |
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651 a = DoGet(ORTHANC, '/dicom-web/studies') |
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652 self.assertEqual(1, len(a)) |
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653 self.assertFalse('00280010' in a[0]) # Rows |
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654 |
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655 a = DoGet(ORTHANC, '/dicom-web/studies?includefield=Rows') |
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656 self.assertEqual(1, len(a)) |
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657 self.assertTrue('00280010' in a[0]) |
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658 self.assertEqual(512, a[0]['00280010']['Value'][0]) |
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659 |
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660 a = DoGet(ORTHANC, '/dicom-web/studies?Rows=128') |
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661 self.assertEqual(0, len(a)) |
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662 |
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663 a = DoGet(ORTHANC, '/dicom-web/studies?Rows=512') |
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664 self.assertEqual(1, len(a)) |
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665 self.assertTrue('00280010' in a[0]) |
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666 self.assertEqual(512, a[0]['00280010']['Value'][0]) |
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667 |
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668 |
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669 def test_stow_errors(self): |
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670 def CheckSequences(a): |
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671 self.assertEqual(3, len(a)) |
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672 self.assertTrue('00080005' in a) |
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673 self.assertTrue('00081198' in a) |
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674 self.assertTrue('00081199' in a) |
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675 self.assertEqual('CS', a['00080005']['vr']) |
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676 self.assertEqual('SQ', a['00081198']['vr']) |
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677 self.assertEqual('SQ', a['00081199']['vr']) |
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678 |
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679 # Pushing an instance to a study that is not its parent |
398
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680 (status, a) = SendStowRaw(ORTHANC, args.dicomweb + '/studies/nope', GetDatabasePath('Phenix/IM-0001-0001.dcm')) |
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681 self.assertEqual(409, status) |
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682 CheckSequences(a) |
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683 |
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684 self.assertFalse('Value' in a['00081199']) # No success instance |
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685 |
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686 self.assertEqual(1, len(a['00081198']['Value'])) # One failed instance |
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687 self.assertEqual('1.2.840.10008.5.1.4.1.1.2', |
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688 a['00081198']['Value'][0]['00081150']['Value'][0]) |
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689 self.assertEqual('1.2.840.113704.7.1.1.6632.1127829031.2', |
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690 a['00081198']['Value'][0]['00081155']['Value'][0]) |
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691 self.assertEqual(0x0110, # Processing failure |
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692 a['00081198']['Value'][0]['00081197']['Value'][0]) |
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693 |
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694 # Pushing an instance with missing tags |
398
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695 (status, a) = SendStowRaw(ORTHANC, args.dicomweb + '/studies', GetDatabasePath('Issue111.dcm')) |
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696 self.assertEqual(400, status) |
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697 CheckSequences(a) |
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698 |
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699 self.assertFalse('Value' in a['00081198']) # No failed instance, as tags are missing |
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700 self.assertFalse('Value' in a['00081199']) # No success instance |
227
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701 |
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702 # Pushing a file that is not in the DICOM format |
398
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703 (status, a) = SendStowRaw(ORTHANC, args.dicomweb + '/studies', GetDatabasePath('Issue111.dump')) |
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704 self.assertEqual(400, status) |
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705 CheckSequences(a) |
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706 |
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707 self.assertFalse('Value' in a['00081198']) # No failed instance, as non-DICOM |
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708 self.assertFalse('Value' in a['00081199']) # No success instance |
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709 |
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710 # Pushing a DICOM instance with only SOP class and instance UID |
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711 (status, a) = SendStowRaw(ORTHANC, args.dicomweb + '/studies', GetDatabasePath('Issue196.dcm')) |
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712 self.assertEqual(400, status) |
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713 CheckSequences(a) |
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714 |
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715 self.assertFalse('Value' in a['00081199']) # No success instance |
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716 |
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717 self.assertEqual(1, len(a['00081198']['Value'])) # One failed instance |
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718 self.assertEqual('1.2.840.10008.5.1.4.1.1.4', |
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719 a['00081198']['Value'][0]['00081150']['Value'][0]) |
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720 self.assertEqual('1.2.840.113619.2.176.2025.1499492.7040.1171286242.109', |
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721 a['00081198']['Value'][0]['00081155']['Value'][0]) |
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722 self.assertEqual(0xC000, # Error: Cannot understand (cannot understand certain Data Elements) |
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723 a['00081198']['Value'][0]['00081197']['Value'][0]) |
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724 |
239
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725 |
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726 def test_allowed_methods(self): |
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727 self.assertEqual(0, len(DoGet(ORTHANC, '/dicom-web/studies'))) |
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728 |
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729 with self.assertRaises(Exception) as e: |
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730 DoPut(ORTHANC, '/dicom-web/studies') |
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731 |
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732 self.assertEqual(405, e.exception[0]) |
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733 self.assertEqual("GET,POST", e.exception[1]['allow']) |
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734 |
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735 with self.assertRaises(Exception) as e: |
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736 DoDelete(ORTHANC, '/dicom-web/studies') |
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737 |
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738 self.assertEqual(405, e.exception[0]) |
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739 self.assertEqual("GET,POST", e.exception[1]['allow']) |
241
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740 |
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741 |
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742 def test_add_server(self): |
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743 try: |
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744 DoDelete(ORTHANC, '/dicom-web/servers/hello') |
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745 except: |
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746 pass |
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747 |
277 | 748 try: |
749 DoDelete(ORTHANC, '/dicom-web/servers/google') # If "AllWindowsStart.sh" is used | |
750 except: | |
751 pass | |
752 | |
241
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753 l = DoGet(ORTHANC, '/dicom-web/servers') |
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754 self.assertEqual(1, len(l)) |
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755 self.assertTrue('sample' in l) |
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756 |
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757 url = 'http://localhost:8042/dicom-web/' |
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758 DoPut(ORTHANC, '/dicom-web/servers/hello', { |
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759 'Url': url, |
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760 'HttpHeaders' : { |
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761 'Hello' : 'World' |
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762 }, |
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763 'Username' : 'bob', |
242 | 764 'Password' : 'password', |
765 'UserProperty' : 'Test', | |
249
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766 'HasDelete' : True, |
381
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767 'Timeout' : 66 # New in 1.6 |
241
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768 }) |
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769 |
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770 l = DoGet(ORTHANC, '/dicom-web/servers') |
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771 self.assertEqual(2, len(l)) |
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772 self.assertTrue('sample' in l) |
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773 self.assertTrue('hello' in l) |
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774 |
249
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775 o = DoGet(ORTHANC, '/dicom-web/servers/sample') |
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776 self.assertEqual(5, len(o)) |
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777 self.assertTrue('stow' in o) |
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778 self.assertTrue('retrieve' in o) |
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779 self.assertTrue('get' in o) |
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780 self.assertTrue('wado' in o) # New in 0.7 |
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781 self.assertTrue('qido' in o) # New in 0.7 |
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782 |
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783 o = DoGet(ORTHANC, '/dicom-web/servers/hello') |
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784 self.assertEqual(6, len(o)) |
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|
785 self.assertTrue('stow' in o) |
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786 self.assertTrue('retrieve' in o) |
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|
787 self.assertTrue('get' in o) |
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788 self.assertTrue('wado' in o) # New in 0.7 |
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789 self.assertTrue('qido' in o) # New in 0.7 |
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790 self.assertTrue('delete' in o) # New in 0.7 |
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791 |
241
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792 s = DoGet(ORTHANC, '/dicom-web/servers?expand') |
381
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793 self.assertEqual(8, len(s['hello'])) |
241
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794 self.assertEqual(url, s['hello']['Url']) |
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795 self.assertEqual('bob', s['hello']['Username']) |
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796 self.assertEqual(None, s['hello']['Password']) |
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797 self.assertFalse(s['hello']['Pkcs11']) |
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798 self.assertEqual(1, len(s['hello']['HttpHeaders'])) |
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|
799 self.assertTrue('Hello' in s['hello']['HttpHeaders']) |
242 | 800 self.assertEqual('Test', s['hello']['UserProperty']) |
249
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801 self.assertEqual('1', s['hello']['HasDelete']) |
388
3ef44d201875
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|
802 self.assertEqual(66, s['hello']['Timeout']) # New in 1.6 (interpreted as a string in <= 1.5) |
241
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|
803 |
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|
804 DoDelete(ORTHANC, '/dicom-web/servers/hello') |
246
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test_bitbucket_issue_143
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|
805 |
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changeset
|
806 |
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test_bitbucket_issue_143
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|
807 def test_bitbucket_issue_143(self): |
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808 # WADO-RS metadata request returns "500 Internal Server Error" |
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809 # instead of "404 Not Found" for missing instance |
319 | 810 # https://bugs.orthanc-server.com/show_bug.cgi?id=143 |
246
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811 UploadInstance(ORTHANC, 'Issue143.dcm') |
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|
812 |
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|
813 try: |
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814 DoGet(ORTHANC, '/dicom-web/studies/1.2.840.113619.2.55.3.671756986.106.1316467036.460/series/1.2.840.113619.2.55.3.671756986.106.1316467036.465/instances/0.0.0.0.0/metadata') |
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815 self.assertFail() |
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|
816 except Exception as e: |
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817 self.assertEqual(404, e[0]) |
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|
818 |
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|
819 DoGet(ORTHANC, '/dicom-web/studies/1.3.6.1.4.1.34261.90254037371867.41912.1553085024.2/series/1.3.6.1.4.1.34261.90254037371867.41912.1553085024.3/instances/1.2.276.0.7230010.3.1.4.253549293.36648.1555586123.754/metadata') |
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|
820 |
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|
821 try: |
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822 DoGet(ORTHANC, '/dicom-web/studies/0.0.0.0.0/series/1.3.6.1.4.1.34261.90254037371867.41912.1553085024.3/instances/1.2.276.0.7230010.3.1.4.253549293.36648.1555586123.754/metadata') |
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823 self.fail() |
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824 except Exception as e: |
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825 self.assertEqual(404, e[0]) |
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826 |
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changeset
|
827 try: |
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changeset
|
828 DoGet(ORTHANC, '/dicom-web/studies/1.3.6.1.4.1.34261.90254037371867.41912.1553085024.2/series/0.0.0.0.0/instances/1.2.276.0.7230010.3.1.4.253549293.36648.1555586123.754/metadata') |
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829 self.assertFail() |
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|
830 except Exception as e: |
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changeset
|
831 self.assertEqual(404, e[0]) |
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changeset
|
832 |
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changeset
|
833 try: |
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|
834 DoGet(ORTHANC, '/dicom-web/studies/0.0.0.0.0/series/0.0.0.0.0/instances/0.0.0.0.0/metadata') |
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|
835 self.assertFail() |
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|
836 except Exception as e: |
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changeset
|
837 self.assertEqual(404, e[0]) |
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changeset
|
838 |
248
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diff
changeset
|
839 |
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changeset
|
840 def test_encodings_qido(self): |
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|
841 # The "DefaultEncoding" condifuration option is set to "UTF8" |
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|
842 # in the integration tests, so all the QIDO-RS requests must |
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changeset
|
843 # lead to a "ISO_IR 192" specific character set |
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changeset
|
844 def GetPatientName(dicom, onlyAlphabetic): |
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changeset
|
845 i = UploadInstance(ORTHANC, dicom) ['ID'] |
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changeset
|
846 j = DoGet(ORTHANC, '/instances/%s/tags?simplify' % i) ['StudyInstanceUID'] |
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changeset
|
847 qido = DoGet(ORTHANC, '/dicom-web/studies?0020000D=%s' % j) |
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|
848 self.assertEqual(1, len(qido)) |
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|
849 self.assertEqual('CS', qido[0]['00080005']['vr']) |
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850 self.assertEqual('ISO_IR 192', qido[0]['00080005']['Value'][0]) |
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changeset
|
851 if onlyAlphabetic: |
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changeset
|
852 self.assertEqual(1, len(qido[0]['00100010']['Value'][0])) |
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changeset
|
853 else: |
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diff
changeset
|
854 self.assertEqual(3, len(qido[0]['00100010']['Value'][0])) |
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diff
changeset
|
855 return qido[0]['00100010']['Value'][0] |
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diff
changeset
|
856 |
314 | 857 # Make sure UTF-8 encoding is used |
858 self.assertEqual('Utf8', DoPut(ORTHANC, '/tools/default-encoding', 'Utf8')) | |
859 | |
248
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diff
changeset
|
860 # Check out "test_issue_95_encodings" in "../../Tests/Tests.py" |
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diff
changeset
|
861 |
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changeset
|
862 self.assertEqual(u'Buc^Jérôme', GetPatientName('Encodings/DavidClunie/SCSFREN', True) ['Alphabetic']) |
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|
863 self.assertEqual(u'Äneas^Rüdiger', GetPatientName('Encodings/DavidClunie/SCSGERM', True)['Alphabetic']) |
26c3a1ed935a
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changeset
|
864 self.assertEqual(u'Διονυσιος', GetPatientName('Encodings/DavidClunie/SCSGREEK', True)['Alphabetic']) |
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changeset
|
865 self.assertEqual(u'Люкceмбypг', GetPatientName('Encodings/DavidClunie/SCSRUSS', True)['Alphabetic']) |
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|
866 self.assertEqual(u'שרון^דבורה', GetPatientName('Encodings/DavidClunie/SCSHBRW', True)['Alphabetic']) |
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changeset
|
867 self.assertEqual(u'قباني^لنزار', GetPatientName('Encodings/DavidClunie/SCSARAB', True)['Alphabetic']) |
26c3a1ed935a
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diff
changeset
|
868 |
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changeset
|
869 self.assertEqual(u'Hong^Gildong', GetPatientName('Encodings/DavidClunie/SCSI2', False)['Alphabetic']) |
26c3a1ed935a
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changeset
|
870 self.assertEqual(u'洪^吉洞', GetPatientName('Encodings/DavidClunie/SCSI2', False)['Ideographic']) |
26c3a1ed935a
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changeset
|
871 self.assertEqual(u'홍^길동', GetPatientName('Encodings/DavidClunie/SCSI2', False)['Phonetic']) |
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changeset
|
872 self.assertEqual(u'Wang^XiaoDong', GetPatientName('Encodings/DavidClunie/SCSX2', False)['Alphabetic']) |
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changeset
|
873 self.assertEqual(u'王^小东', GetPatientName('Encodings/DavidClunie/SCSX2', False)['Ideographic']) |
26c3a1ed935a
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diff
changeset
|
874 self.assertEqual(u'', GetPatientName('Encodings/DavidClunie/SCSX2', False)['Phonetic']) |
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changeset
|
875 self.assertEqual(u'Wang^XiaoDong', GetPatientName('Encodings/DavidClunie/SCSX1', False)['Alphabetic']) |
26c3a1ed935a
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diff
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876 self.assertEqual(u'王^小東', GetPatientName('Encodings/DavidClunie/SCSX1', False)['Ideographic']) |
26c3a1ed935a
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changeset
|
877 self.assertEqual(u'', GetPatientName('Encodings/DavidClunie/SCSX1', False)['Phonetic']) |
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|
878 self.assertEqual(u'Yamada^Tarou', GetPatientName('Encodings/DavidClunie/SCSH31', False)['Alphabetic']) |
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diff
changeset
|
879 self.assertEqual(u'山田^太郎', GetPatientName('Encodings/DavidClunie/SCSH31', False)['Ideographic']) |
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|
880 self.assertEqual(u'やまだ^たろう', GetPatientName('Encodings/DavidClunie/SCSH31', False)['Phonetic']) |
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changeset
|
881 self.assertEqual(u'ヤマダ^タロウ', GetPatientName('Encodings/DavidClunie/SCSH32', False)['Alphabetic']) |
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diff
changeset
|
882 |
249
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diff
changeset
|
883 # TODO - Not supported yet by the Orthanc core as of 1.5.7 |
248
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diff
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|
884 #self.assertEqual(u'山田^太郎', GetPatientName('Encodings/DavidClunie/SCSH32')['Ideographic']) |
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885 #self.assertEqual(u'やまだ^たろう', GetPatientName('Encodings/DavidClunie/SCSH32')['Phonetic']) |
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886 |
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|
887 |
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888 def test_encodings_wado_metadata(self): |
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889 # If querying the instance metadata, the "DefaultEncoding" |
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|
890 # configuration is not used, but the actual encoding |
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891 def GetEncoding(dicom, length): |
249
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892 qido = DoGet(ORTHANC, '/dicom-web/%s/metadata' % UploadAndGetWadoPath(dicom)) |
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893 self.assertEqual(1, len(qido)) |
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894 self.assertEqual(length, len(qido[0]['00080005']['Value'])) |
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895 self.assertEqual('CS', qido[0]['00080005']['vr']) |
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896 return qido[0]['00080005']['Value'] |
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|
897 |
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898 self.assertEqual('ISO_IR 100', GetEncoding('Encodings/DavidClunie/SCSFREN', 1)[0]) |
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899 self.assertEqual('ISO_IR 100', GetEncoding('Encodings/DavidClunie/SCSGERM', 1)[0]) |
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900 self.assertEqual('ISO_IR 126', GetEncoding('Encodings/DavidClunie/SCSGREEK', 1)[0]) |
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901 self.assertEqual('ISO_IR 144', GetEncoding('Encodings/DavidClunie/SCSRUSS', 1)[0]) |
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902 self.assertEqual('ISO_IR 138', GetEncoding('Encodings/DavidClunie/SCSHBRW', 1)[0]) |
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903 self.assertEqual('ISO_IR 127', GetEncoding('Encodings/DavidClunie/SCSARAB', 1)[0]) |
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904 self.assertEqual('ISO 2022 IR 149', GetEncoding('Encodings/DavidClunie/SCSI2', 1)[0]) |
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905 self.assertEqual('GB18030', GetEncoding('Encodings/DavidClunie/SCSX2', 1)[0]) |
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906 self.assertEqual('ISO_IR 192', GetEncoding('Encodings/DavidClunie/SCSX1', 1)[0]) |
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907 self.assertEqual('ISO 2022 IR 87', GetEncoding('Encodings/DavidClunie/SCSH31', 1)[0]) |
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908 self.assertEqual('ISO 2022 IR 13', GetEncoding('Encodings/DavidClunie/SCSH32', 2)[0]) |
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909 self.assertEqual('ISO 2022 IR 87', GetEncoding('Encodings/DavidClunie/SCSH32', 2)[1]) |
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910 |
249
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|
911 |
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912 def test_rendered(self): |
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913 def RenderFrame(path, i): |
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914 return DoPost(ORTHANC, '/dicom-web/servers/sample/get', { |
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915 'Uri' : '%s/frames/%d/rendered' % (path, i) |
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916 }) |
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|
917 |
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|
918 # This image has 76 frames |
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919 path = UploadAndGetWadoPath('Multiframe.dcm') |
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920 |
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|
921 self.assertRaises(Exception, lambda: RenderFrame(path, 0)) |
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922 |
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923 frame1 = RenderFrame(path, 1) |
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924 im = UncompressImage(frame1) |
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925 self.assertEqual("L", im.mode) |
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926 self.assertEqual(512, im.size[0]) |
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927 self.assertEqual(512, im.size[1]) |
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|
928 |
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|
929 im = UncompressImage(RenderFrame(path, 76)) |
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930 self.assertEqual("L", im.mode) |
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931 self.assertEqual(512, im.size[0]) |
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932 self.assertEqual(512, im.size[1]) |
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|
933 |
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|
934 self.assertRaises(Exception, lambda: RenderFrame(path, 77)) |
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|
935 |
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|
936 defaultFrame = DoPost(ORTHANC, '/dicom-web/servers/sample/get', { |
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|
937 'Uri' : '%s/rendered' % path |
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|
938 }) |
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|
939 |
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|
940 self.assertEqual(len(frame1), len(defaultFrame)) |
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|
941 self.assertEqual(frame1, defaultFrame) |
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|
942 |
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|
943 |
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|
944 # This image has 1 frame |
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|
945 path = UploadAndGetWadoPath('Phenix/IM-0001-0001.dcm') |
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|
946 |
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|
947 self.assertRaises(Exception, lambda: RenderFrame(path, 0)) |
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|
948 self.assertRaises(Exception, lambda: RenderFrame(path, 2)) |
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|
949 |
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|
950 frame1 = RenderFrame(path, 1) |
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|
951 im = UncompressImage(frame1) |
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|
952 self.assertEqual("L", im.mode) |
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953 self.assertEqual(512, im.size[0]) |
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954 self.assertEqual(358, im.size[1]) |
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|
955 |
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|
956 defaultFrame = DoPost(ORTHANC, '/dicom-web/servers/sample/get', { |
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957 'Uri' : '%s/rendered' % path |
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|
958 }) |
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|
959 |
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960 self.assertEqual(len(frame1), len(defaultFrame)) |
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|
961 self.assertEqual(frame1, defaultFrame) |
259
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|
962 |
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|
963 |
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964 def test_qido_parent_attributes(self): |
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965 UploadInstance(ORTHANC, 'Brainix/Flair/IM-0001-0001.dcm') |
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966 study = '2.16.840.1.113669.632.20.1211.10000357775' |
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967 series = '1.3.46.670589.11.0.0.11.4.2.0.8743.5.5396.2006120114285654497' |
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968 instance = '1.3.46.670589.11.0.0.11.4.2.0.8743.5.5396.2006120114314079549' |
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969 |
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970 a = DoGet(ORTHANC, '/dicom-web/studies') |
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971 self.assertEqual(1, len(a)) |
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972 self.assertFalse('00080018' in a[0]) # SOPInstanceUID |
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973 self.assertFalse('0020000E' in a[0]) # SeriesInstanceUID |
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974 self.assertEqual(study, a[0]['0020000D']['Value'][0]) |
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975 self.assertEqual('BRAINIX', a[0]['00100010']['Value'][0]['Alphabetic']) |
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976 |
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977 a = DoGet(ORTHANC, '/dicom-web/studies?0020000D=%s' % study) |
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978 self.assertEqual(1, len(a)) |
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979 self.assertFalse('00080018' in a[0]) # SOPInstanceUID |
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980 self.assertFalse('0020000E' in a[0]) # SeriesInstanceUID |
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981 self.assertEqual(study, a[0]['0020000D']['Value'][0]) |
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982 self.assertEqual('BRAINIX', a[0]['00100010']['Value'][0]['Alphabetic']) |
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983 |
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984 a = DoGet(ORTHANC, '/dicom-web/series') |
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985 self.assertEqual(1, len(a)) |
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986 self.assertFalse('00080018' in a[0]) |
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987 self.assertEqual(study, a[0]['0020000D']['Value'][0]) |
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988 self.assertEqual(series, a[0]['0020000E']['Value'][0]) |
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989 self.assertEqual('MR', a[0]['00080060']['Value'][0]) |
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990 self.assertEqual('BRAINIX', a[0]['00100010']['Value'][0]['Alphabetic']) |
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991 |
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992 a = DoGet(ORTHANC, '/dicom-web/instances') |
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993 self.assertEqual(1, len(a)) |
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994 self.assertEqual(study, a[0]['0020000D']['Value'][0]) |
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995 self.assertEqual(series, a[0]['0020000E']['Value'][0]) |
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996 self.assertEqual(instance, a[0]['00080018']['Value'][0]) |
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997 self.assertEqual('MR', a[0]['00080060']['Value'][0]) |
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998 self.assertEqual('BRAINIX', a[0]['00100010']['Value'][0]['Alphabetic']) |
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999 |
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1000 a = DoGet(ORTHANC, '/dicom-web/studies/%s/series' % study) |
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1001 self.assertEqual(1, len(a)) |
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1002 self.assertFalse('00080018' in a[0]) |
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1003 self.assertEqual(study, a[0]['0020000D']['Value'][0]) |
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1004 self.assertEqual(series, a[0]['0020000E']['Value'][0]) |
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1005 self.assertEqual('MR', a[0]['00080060']['Value'][0]) |
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1006 self.assertEqual('BRAINIX', a[0]['00100010']['Value'][0]['Alphabetic']) |
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1007 |
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1008 a = DoGet(ORTHANC, '/dicom-web/studies/%s/series/%s/instances' % (study, series)) |
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1009 self.assertEqual(1, len(a)) |
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1010 self.assertEqual(study, a[0]['0020000D']['Value'][0]) |
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1011 self.assertEqual(series, a[0]['0020000E']['Value'][0]) |
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1012 self.assertEqual(instance, a[0]['00080018']['Value'][0]) |
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1013 self.assertEqual('MR', a[0]['00080060']['Value'][0]) |
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1014 self.assertEqual('BRAINIX', a[0]['00100010']['Value'][0]['Alphabetic']) |
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1015 |
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1016 # "If {StudyInstanceUID} is not specified, all Study-level |
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1017 # attributes specified in Table 6.7.1-2" => Here, |
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1018 # {StudyInstanceUID} *is* specified, so we must *not* get the |
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1019 # PatientName. |
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1020 # http://dicom.nema.org/medical/dicom/2019a/output/html/part18.html#table_6.7.1-2a |
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1021 a = DoGet(ORTHANC, '/dicom-web/series?0020000D=%s' % study) |
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1022 self.assertEqual(1, len(a)) |
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1023 self.assertFalse('00100010' in a[0]) # PatientName |
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1024 self.assertEqual(study, a[0]['0020000D']['Value'][0]) |
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1025 self.assertEqual(series, a[0]['0020000E']['Value'][0]) |
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1026 self.assertEqual('MR', a[0]['00080060']['Value'][0]) |
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1027 |
487 | 1028 # if we ask explicitely for the Patient and Study tags, we must get it |
1029 a = DoGet(ORTHANC, '/dicom-web/series?0020000D=%s&includefield=00100010&includefield=00080020' % study) | |
1030 self.assertEqual(1, len(a)) | |
1031 self.assertTrue('00100010' in a[0]) # PatientName | |
1032 self.assertTrue('00080020' in a[0]) # StudyDate | |
1033 | |
1034 # if {StudyInstanceUID} *is not* specified, we must get the PatientName | |
1035 a = DoGet(ORTHANC, '/dicom-web/series') | |
1036 self.assertTrue('00100010' in a[0]) # PatientName | |
1037 | |
259
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1038 # http://dicom.nema.org/medical/dicom/2019a/output/html/part18.html#table_6.7.1-2b |
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1039 a = DoGet(ORTHANC, '/dicom-web/instances?0020000D=%s' % study) |
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1040 self.assertEqual(1, len(a)) |
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1041 self.assertFalse('00100010' in a[0]) # PatientName |
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1042 self.assertEqual(study, a[0]['0020000D']['Value'][0]) |
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1043 self.assertEqual(series, a[0]['0020000E']['Value'][0]) |
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1044 self.assertEqual('MR', a[0]['00080060']['Value'][0]) |
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1045 |
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1046 a = DoGet(ORTHANC, '/dicom-web/instances?0020000E=%s' % series) |
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1047 self.assertEqual(1, len(a)) |
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1048 self.assertFalse('00080060' in a[0]) # Modality |
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1049 self.assertEqual(study, a[0]['0020000D']['Value'][0]) |
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1050 self.assertEqual(series, a[0]['0020000E']['Value'][0]) |
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1051 self.assertEqual('BRAINIX', a[0]['00100010']['Value'][0]['Alphabetic']) |
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1052 |
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1053 a = DoGet(ORTHANC, '/dicom-web/instances?0020000D=%s&0020000E=%s' % (study, series)) |
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1054 self.assertEqual(1, len(a)) |
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1055 self.assertFalse('00100010' in a[0]) # PatientName |
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1056 self.assertFalse('00080060' in a[0]) # Modality |
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1057 self.assertEqual(study, a[0]['0020000D']['Value'][0]) |
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1058 self.assertEqual(series, a[0]['0020000E']['Value'][0]) |
261
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1059 |
487 | 1060 # if we ask explicitely for the Patient and Study tags, we must get it |
1061 a = DoGet(ORTHANC, '/dicom-web/instances?0020000D=%s&includefield=00100010&includefield=00080020' % study) | |
1062 self.assertEqual(1, len(a)) | |
1063 self.assertTrue('00100010' in a[0]) # PatientName | |
1064 self.assertTrue('00080020' in a[0]) # StudyDate | |
1065 | |
1066 # if {StudyInstanceUID} *is not* specified, we must get all Study, Series and Patient tags | |
1067 a = DoGet(ORTHANC, '/dicom-web/instances') | |
1068 self.assertTrue('00100010' in a[0]) # PatientName | |
1069 self.assertTrue('00080020' in a[0]) # StudyDate | |
1070 self.assertTrue('00080060' in a[0]) # Modality | |
1071 | |
261
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1072 |
270
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1073 #@unittest.skip("Skip this test on GDCM 2.8.4") |
261
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1074 def test_bitbucket_issue_164(self): |
270
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1075 # WARNING - This makes GDCM 2.8.4 crash |
319 | 1076 # https://bugs.orthanc-server.com/show_bug.cgi?id=164 |
261
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1077 UploadInstance(ORTHANC, 'Issue164.dcm') |
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1078 |
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1079 p = DoGetMultipart(ORTHANC, 'dicom-web/studies/1.2.276.0.26.1.1.1.2.2020.45.52293.1506048/series/1.2.276.0.26.1.1.1.2.2020.45.52293.6384450/instances/1.2.276.0.26.1.1.1.2.2020.45.52366.2551599.179568640/frames/5') |
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1080 self.assertEqual(1, len(p)) |
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1081 self.assertEqual(743 * 975 * 3, len(p[0])) |
304 | 1082 |
1083 if HasGdcmPlugin(ORTHANC): | |
1084 self.assertTrue(ComputeMD5(p[0]) in [ | |
1085 'b952d67da9ff004b0adae3982e89d620', # GDCM >= 3.0 | |
1086 'b3662c4bfa24a0c73abb08548c63319b' # Fallback to DCMTK | |
1087 ]) | |
1088 else: | |
1089 self.assertEqual('b3662c4bfa24a0c73abb08548c63319b', ComputeMD5(p[0])) # DCMTK | |
270
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1090 |
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1091 |
271 | 1092 def test_bitbucket_issue_168(self): |
276 | 1093 # "Plugins can't read private tags from the configuration |
1094 # file" This test will fail if DCMTK <= 3.6.1 (e.g. on Ubuntu | |
1095 # 16.04), or if Orthanc <= 1.5.8 | |
319 | 1096 # https://bugs.orthanc-server.com/show_bug.cgi?id=168 |
270
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1097 |
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1098 UploadInstance(ORTHANC, 'Issue168.dcm') |
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1099 |
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1100 a = DoGet(ORTHANC, '/dicom-web/studies') |
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1101 self.assertEqual(1, len(a)) |
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1102 self.assertFalse('00090010' in a[0]) |
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1103 self.assertFalse('00091001' in a[0]) |
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1104 self.assertEqual('20170404', a[0]['00080020']['Value'][0]) |
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1105 |
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1106 a = DoGet(ORTHANC, '/dicom-web/studies?includefield=00091001') |
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1107 self.assertEqual(1, len(a)) |
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1108 self.assertFalse('00090010' in a[0]) |
325
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1109 self.assertTrue('00091001' in a[0]) # This fails if DCMTK <= 3.6.1 |
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1110 self.assertEqual('DS', a[0]['00091001']['vr']) |
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1111 self.assertEqual(1, len(a[0]['00091001']['Value'])) |
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1112 self.assertAlmostEqual(98.41, a[0]['00091001']['Value'][0]) |
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1113 |
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1114 a = DoGet(ORTHANC, '/dicom-web/studies?00090010=Lunit&includefield=00091001') |
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1115 self.assertEqual(1, len(a)) |
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1116 self.assertTrue('00090010' in a[0]) |
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1117 self.assertEqual('LO', a[0]['00090010']['vr']) |
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1118 self.assertEqual(1, len(a[0]['00090010']['Value'])) |
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1119 self.assertEqual('Lunit', a[0]['00090010']['Value'][0]) |
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1120 self.assertTrue('00091001' in a[0]) |
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1121 self.assertEqual('DS', a[0]['00091001']['vr']) |
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1122 self.assertEqual(1, len(a[0]['00091001']['Value'])) |
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1123 self.assertAlmostEqual(98.41, a[0]['00091001']['Value'][0]) |
249
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1124 |
270
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1125 a = DoGet(ORTHANC, '/dicom-web/studies?00090010=Lunit2&includefield=00091001') |
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1126 self.assertEqual(0, len(a)) |
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1127 |
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1128 |
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1129 def test_rendered_studies_series(self): |
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1130 i = UploadInstance(ORTHANC, 'Phenix/IM-0001-0001.dcm') ['ID'] |
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1131 study = DoGet(ORTHANC, '/instances/%s/tags?simplify' % i) ['StudyInstanceUID'] |
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1132 series = DoGet(ORTHANC, '/instances/%s/tags?simplify' % i) ['SeriesInstanceUID'] |
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1133 instance = DoGet(ORTHANC, '/instances/%s/tags?simplify' % i) ['SOPInstanceUID'] |
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1134 |
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1135 a = DoPost(ORTHANC, '/dicom-web/servers/sample/get', { |
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1136 'Uri' : '/studies/%s/series/%s/instances/%s/rendered' % (study, series, instance) |
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1137 }) |
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1138 |
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1139 im = UncompressImage(a) |
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1140 self.assertEqual("L", im.mode) |
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1141 self.assertEqual(512, im.size[0]) |
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1142 self.assertEqual(358, im.size[1]) |
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1143 |
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1144 b = DoPost(ORTHANC, '/dicom-web/servers/sample/get', { |
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1145 'Uri' : '/studies/%s/series/%s/rendered' % (study, series) |
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1146 }) |
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1147 |
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1148 self.assertEqual(len(a), len(b)) |
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1149 self.assertEqual(a, b) |
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1150 |
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1151 c = DoPost(ORTHANC, '/dicom-web/servers/sample/get', { |
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1152 'Uri' : '/studies/%s/rendered' % study |
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1153 }) |
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1154 |
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1155 self.assertEqual(len(a), len(c)) |
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1156 self.assertEqual(a, c) |
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1157 |
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1158 |
273
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1159 def test_multiple_mime_accept_wado_rs(self): |
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1160 # "Multiple MIME type Accept Headers for Wado-RS" |
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1161 # https://groups.google.com/forum/#!msg/orthanc-users/P3B6J9abZpE/syn5dnW2AwAJ |
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1162 |
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1163 UploadInstance(ORTHANC, 'DummyCT.dcm') |
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1164 study = '1.2.840.113619.2.176.2025.1499492.7391.1171285944.390' |
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1165 |
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1166 self.assertEqual(1, len(DoGet(ORTHANC, '/dicom-web/studies/%s/metadata' % study))) |
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1167 |
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1168 self.assertEqual(1, len(DoGet(ORTHANC, '/dicom-web/studies/%s/metadata' % study, |
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1169 headers = { 'Accept' : 'application/json, application/dicom+json' }))) |
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1170 |
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1171 self.assertEqual(1, len(DoGet(ORTHANC, '/dicom-web/studies/%s/metadata' % study, |
274 | 1172 headers = { 'Accept' : 'application/json' }))) |
1173 | |
1174 self.assertEqual(1, len(DoGet(ORTHANC, '/dicom-web/studies/%s/metadata' % study, | |
1175 headers = { 'Accept' : 'application/dicom+json' }))) | |
1176 | |
1177 self.assertEqual(1, len(DoGet(ORTHANC, '/dicom-web/studies/%s/metadata' % study, | |
273
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1178 headers = { 'Accept' : 'toto, application/dicom+json' }))) |
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1179 |
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1180 self.assertEqual(1, len(DoGet(ORTHANC, '/dicom-web/studies/%s/metadata' % study, |
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1181 headers = { 'Accept' : 'application/json, tata' }))) |
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1182 |
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1183 self.assertRaises(Exception, lambda: DoGet(ORTHANC, '/dicom-web/studies/%s/metadata' % study, |
274 | 1184 headers = { 'Accept' : 'toto' })) |
1185 | |
1186 self.assertRaises(Exception, lambda: DoGet(ORTHANC, '/dicom-web/studies/%s/metadata' % study, | |
273
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1187 headers = { 'Accept' : 'toto, tata' })) |
275 | 1188 |
1189 # https://groups.google.com/d/msg/orthanc-users/9o5kItsMQI0/Og6B27YyBgAJ | |
1190 self.assertEqual(1, len(DoGetMultipart(ORTHANC, '/dicom-web/studies/%s/metadata' % study, | |
1191 headers = { 'Accept' : 'multipart/related;type=application/dicom+xml' }))) | |
1192 | |
1193 self.assertEqual(1, len(DoGet(ORTHANC, '/dicom-web/studies/%s/metadata' % study, | |
1194 headers = { 'Accept' : 'application/json, application/dicom+xml' }))) | |
1195 | |
1196 self.assertEqual(1, len(DoGet(ORTHANC, '/dicom-web/studies/%s/metadata' % study, | |
1197 headers = { 'Accept' : 'application/dicom+xml, application/json' }))) | |
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1198 |
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1199 |
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1200 |
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1201 def test_bitbucket_issue_56(self): |
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1202 # "Case-insensitive matching over accents" => DICOMweb part |
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1203 # from AlexanderM on 2020-03-20 |
319 | 1204 # https://bugs.orthanc-server.com/show_bug.cgi?id=56 |
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1205 UploadInstance(ORTHANC, 'Issue56-NoPixelData.dcm') |
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1206 |
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1207 self.assertEqual(1, len(DoPost(ORTHANC, '/tools/find', { |
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1208 'Level' : 'Patient', |
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1209 'Query' : { |
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1210 'PatientName' : 'Гусева*', |
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1211 }, |
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1212 }))) |
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1213 |
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1214 self.assertEqual(1, len(DoPost(ORTHANC, '/tools/find', { |
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1215 'Level' : 'Patient', |
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1216 'Query' : { |
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1217 'PatientName' : 'гусева*', |
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1218 }, |
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1219 }))) |
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1220 |
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1221 self.assertEqual(1, len(DoGet(ORTHANC, u'/dicom-web/studies?PatientName=Гусева*', |
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1222 headers = { 'accept' : 'application/json' }))) |
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1223 |
297
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1224 # This line is the issue |
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1225 self.assertEqual(1, len(DoGet(ORTHANC, u'/dicom-web/studies?PatientName=гусева*', |
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1226 headers = { 'accept' : 'application/json' }))) |
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1227 |
297
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1228 |
318
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1229 def test_frames_transcoding(self): |
297
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1230 ACCEPT = { |
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1231 '1.2.840.10008.1.2' : 'multipart/related; type=application/octet-stream; transfer-syntax=1.2.840.10008.1.2', |
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1232 '1.2.840.10008.1.2.1' : 'multipart/related; type=application/octet-stream; transfer-syntax=1.2.840.10008.1.2.1', |
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1233 '1.2.840.10008.1.2.4.50' : 'multipart/related; type=image/jpeg; transfer-syntax=1.2.840.10008.1.2.4.50', |
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1234 '1.2.840.10008.1.2.4.51' : 'multipart/related; type=image/jpeg; transfer-syntax=1.2.840.10008.1.2.4.51', |
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1235 '1.2.840.10008.1.2.4.57' : 'multipart/related; type=image/jpeg; transfer-syntax=1.2.840.10008.1.2.4.57', |
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1236 '1.2.840.10008.1.2.4.70' : 'multipart/related; type=image/jpeg; transfer-syntax=1.2.840.10008.1.2.4.70', |
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1237 } |
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1238 |
321
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1239 uri = 'dicom-web%s' % UploadAndGetWadoPath('TransferSyntaxes/1.2.840.10008.1.2.4.50.dcm') |
304 | 1240 truth = Image.open(GetDatabasePath('TransferSyntaxes/1.2.840.10008.1.2.4.50.png')) |
1241 | |
297
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1242 a = DoGetMultipart(ORTHANC, '%s/frames/1' % uri, |
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1243 headers = { 'Accept' : ACCEPT['1.2.840.10008.1.2.4.50'] }, |
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1244 returnHeaders = True) |
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1245 self.assertEqual(1, len(a)) |
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1246 self.assertEqual(2, len(a[0])) |
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1247 self.assertEqual('%s%s/frames/1' % (ORTHANC['Url'], uri), |
297
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1248 a[0][1]['Content-Location']) |
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1249 self.assertEqual(ACCEPT['1.2.840.10008.1.2.4.50'], |
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1250 'multipart/related; type=%s' % a[0][1]['Content-Type']) |
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1251 self.assertEqual(53476, len(a[0][0])) |
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1252 self.assertEqual('142fdb8a1dc2aa7e6b8952aa294a6e22', ComputeMD5(a[0][0])) |
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1253 |
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1254 a = DoGetMultipart(ORTHANC, '%s/frames/1' % uri) |
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1255 self.assertEqual(1, len(a)) |
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1256 self.assertEqual(480 * 640 * 3, len(a[0])) |
304 | 1257 |
1258 # http://effbot.org/zone/pil-comparing-images.htm | |
1259 img = Image.frombytes('RGB', [ 640, 480 ], a[0]) | |
1260 self.assertLessEqual(GetMaxImageDifference(img, truth), 2) | |
1261 | |
297
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1262 ACCEPT2 = copy.deepcopy(ACCEPT) |
304 | 1263 if HasGdcmPlugin(ORTHANC): |
297
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1264 IS_GDCM = True |
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1265 ACCEPT2['1.2.840.10008.1.2.1'] = 'multipart/related; type=application/octet-stream' |
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1266 del ACCEPT2['1.2.840.10008.1.2'] |
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1267 else: |
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1268 self.assertEqual('dfdc79f5070926bbb8ac079ee91f5b91', ComputeMD5(a[0])) |
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1269 IS_GDCM = False |
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1270 |
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1271 a = DoGetMultipart(ORTHANC, '%s/frames/1' % uri, |
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1272 headers = { 'Accept' : ACCEPT2['1.2.840.10008.1.2.1'] }) |
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1273 self.assertEqual(1, len(a)) |
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1274 self.assertEqual(480 * 640 * 3, len(a[0])) |
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1275 |
304 | 1276 img = Image.frombytes('RGB', [ 640, 480 ], a[0]) |
1277 self.assertLessEqual(GetMaxImageDifference(img, truth), 2) | |
1278 | |
1279 if not IS_GDCM: | |
297
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1280 self.assertEqual('dfdc79f5070926bbb8ac079ee91f5b91', ComputeMD5(a[0])) |
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1281 |
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1282 |
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1283 # Test download using the same transfer syntax |
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1284 RESULTS = { |
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1285 '1.2.840.10008.1.2' : 'f54c7ea520ab3ec32b6303581ecd262f', |
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1286 '1.2.840.10008.1.2.1' : '4b350b9353a93c747917c7c3bf9b8f44', |
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1287 '1.2.840.10008.1.2.4.50' : '142fdb8a1dc2aa7e6b8952aa294a6e22', |
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1288 '1.2.840.10008.1.2.4.51' : '8b37945d75f9d2899ed868bdba429a0d', |
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1289 '1.2.840.10008.1.2.4.57' : '75c84823eddb560d127b1d24c9406f30', |
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1290 '1.2.840.10008.1.2.4.70' : '2c35726328f0200396e583a0038b0269', |
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1291 } |
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|
1292 |
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|
1293 if IS_GDCM: |
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1294 # This file was failing with GDCM, as it has 2 fragments, |
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1295 # and only the first one was returned => the MD5 below is BAD |
304 | 1296 #RESULTS['1.2.840.10008.1.2.4.51'] = '901963a322a817946b074f9ed0afa060' |
1297 pass | |
1298 | |
297
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1299 for syntax in ACCEPT2: |
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|
1300 uri = '/dicom-web%s' % UploadAndGetWadoPath('TransferSyntaxes/%s.dcm' % syntax) |
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1301 a = DoGetMultipart(ORTHANC, '%s/frames/1' % uri, |
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1302 headers = { 'Accept' : ACCEPT2[syntax] }) |
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1303 self.assertEqual(1, len(a)) |
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1304 self.assertEqual(RESULTS[syntax], ComputeMD5(a[0])) |
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1305 |
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|
1306 # Test transcoding to all the possible transfer syntaxes |
321
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1307 uri = 'dicom-web%s' % UploadAndGetWadoPath('KarstenHilbertRF.dcm') |
297
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1308 for syntax in ACCEPT2: |
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1309 a = DoGetMultipart(ORTHANC, '%s/frames/1' % uri, |
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1310 headers = { 'Accept' : ACCEPT2[syntax] }, |
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1311 returnHeaders = True) |
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1312 self.assertEqual(1, len(a)) |
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1313 self.assertEqual(2, len(a[0])) |
321
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1314 self.assertEqual('%s%s/frames/1' % (ORTHANC['Url'], uri), |
297
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1315 a[0][1]['Content-Location']) |
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1316 self.assertEqual(ACCEPT[syntax], |
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1317 'multipart/related; type=%s' % a[0][1]['Content-Type']) |
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1318 if IS_GDCM: |
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1319 self.assertEqual({ |
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1320 '1.2.840.10008.1.2' : '1c8cebde0c74450ce4dfb75dd52ddad7', |
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1321 '1.2.840.10008.1.2.1' : '1c8cebde0c74450ce4dfb75dd52ddad7', |
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1322 '1.2.840.10008.1.2.4.50' : 'f4d145e5f33fbd39375ce0f91453d6cc', |
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1323 '1.2.840.10008.1.2.4.51' : 'f4d145e5f33fbd39375ce0f91453d6cc', |
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1324 '1.2.840.10008.1.2.4.57' : 'dc55800ce1a8ac556c266cdb26d75757', |
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1325 '1.2.840.10008.1.2.4.70' : 'dc55800ce1a8ac556c266cdb26d75757', |
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1326 } [syntax], ComputeMD5(a[0][0])) |
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1327 else: |
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1328 self.assertEqual({ |
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1329 '1.2.840.10008.1.2' : '1c8cebde0c74450ce4dfb75dd52ddad7', |
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1330 '1.2.840.10008.1.2.1' : '1c8cebde0c74450ce4dfb75dd52ddad7', |
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1331 '1.2.840.10008.1.2.4.50' : '0a0ab74fe7c68529bdd416fc9e5e742a', |
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1332 '1.2.840.10008.1.2.4.51' : '33d1ab2fe169c5b5ba932a9bbc3c6306', |
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1333 '1.2.840.10008.1.2.4.57' : '3d21c969da846ca41e0498a0dcfad061', |
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1334 '1.2.840.10008.1.2.4.70' : '49d5353c8673208629847ad45a855557', |
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1335 } [syntax], ComputeMD5(a[0][0])) |
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1336 |
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1337 |
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1338 # JPEG image with many fragments for 2 frames |
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1339 uri = '/dicom-web%s' % UploadAndGetWadoPath('LenaTwiceWithFragments.dcm') |
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1340 |
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1341 a = DoGetMultipart(ORTHANC, '%s/frames/1' % uri, |
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1342 headers = { 'Accept' : ACCEPT['1.2.840.10008.1.2.4.50'] }) |
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1343 self.assertEqual(1, len(a)) |
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1344 self.assertEqual(69214, len(a[0])) |
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1345 self.assertEqual('0eaf36d4881c513ca70b6684bfaa5b08', ComputeMD5(a[0])) |
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1346 |
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1347 b = DoGetMultipart(ORTHANC, '%s/frames/2' % uri, |
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1348 headers = { 'Accept' : ACCEPT['1.2.840.10008.1.2.4.50'] }) |
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1349 self.assertEqual(1, len(b)) |
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1350 self.assertEqual(a[0], b[0]) |
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1351 |
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1352 b = DoGetMultipart(ORTHANC, '%s/frames/1,2' % uri, |
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1353 headers = { 'Accept' : ACCEPT['1.2.840.10008.1.2.4.50'] }) |
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1354 self.assertEqual(2, len(b)) |
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1355 self.assertEqual(a[0], b[0]) |
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1356 self.assertEqual(a[0], b[1]) |
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1357 |
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1358 |
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1359 def test_wado_transcoding(self): |
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1360 uri = '/dicom-web%s' % UploadAndGetWadoPath('TransferSyntaxes/1.2.840.10008.1.2.4.50.dcm') |
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1361 |
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1362 compressedSize = os.path.getsize(GetDatabasePath('TransferSyntaxes/1.2.840.10008.1.2.4.50.dcm')) |
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1363 |
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1364 self.assertRaises(Exception, lambda: DoGetMultipart(ORTHANC, '%s' % uri, |
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1365 headers = { 'Accept' : 'nope' })) |
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1366 |
367
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1367 # Up to release 1.5 of the DICOMweb plugin, if no |
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1368 # transfer-syntax was specified, no transcoding occured. This |
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1369 # was because of an undefined behavior up to DICOM |
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1370 # 2016b. Starting with DICOM 2016c, the standard explicitly |
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1371 # states that the image should be transcoded to Little Endian |
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1372 # Explicit. |
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1373 a = DoGetMultipart(ORTHANC, '%s' % uri, |
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1374 headers = { }) |
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1375 self.assertEqual(1, len(a)) |
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1376 self.assertEqual('1.2.840.10008.1.2.1', GetTransferSyntax(a[0])) |
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1377 self.assertTrue(10 * compressedSize < len(a[0])) |
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1378 uncompressedSize = len(a[0]) |
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1379 |
318
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1380 a = DoGetMultipart(ORTHANC, '%s' % uri, |
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1381 headers = { 'Accept' : 'multipart/related' }) |
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1382 self.assertEqual(1, len(a)) |
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1383 self.assertEqual('1.2.840.10008.1.2.1', GetTransferSyntax(a[0])) |
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1384 self.assertEqual(uncompressedSize, len(a[0])) |
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1385 |
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1386 a = DoGetMultipart(ORTHANC, '%s' % uri, |
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1387 headers = { 'Accept' : 'multipart/related; type=application/dicom' }) |
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1388 self.assertEqual(1, len(a)) |
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1389 self.assertEqual('1.2.840.10008.1.2.1', GetTransferSyntax(a[0])) |
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1390 self.assertEqual(uncompressedSize, len(a[0])) |
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1391 |
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1392 a = DoGetMultipart(ORTHANC, '%s' % uri, |
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1393 headers = { 'Accept' : 'multipart/related; type=application/dicom; transfer-syntax=*' }) |
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1394 self.assertEqual(1, len(a)) |
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1395 self.assertEqual('1.2.840.10008.1.2.4.50', GetTransferSyntax(a[0])) |
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1396 self.assertEqual(compressedSize, len(a[0])) |
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1397 |
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1398 # Use source transfer syntax |
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1399 a = DoGetMultipart(ORTHANC, '%s' % uri, |
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1400 headers = { 'Accept' : 'multipart/related; type=application/dicom; transfer-syntax=1.2.840.10008.1.2.4.50' }) |
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1401 self.assertEqual(1, len(a)) |
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1402 self.assertEqual('1.2.840.10008.1.2.4.50', GetTransferSyntax(a[0])) |
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1403 self.assertEqual(compressedSize, len(a[0])) |
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1404 |
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1405 a = DoGetMultipart(ORTHANC, '%s' % uri, |
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1406 headers = { 'Accept' : 'multipart/related; type=application/dicom; transfer-syntax=1.2.840.10008.1.2.1' }) |
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1407 self.assertEqual(1, len(a)) |
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1408 self.assertEqual('1.2.840.10008.1.2.1', GetTransferSyntax(a[0])) |
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1409 self.assertEqual(uncompressedSize, len(a[0])) |
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1410 |
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1411 # Transcoding |
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1412 a = DoGetMultipart(ORTHANC, '%s' % uri, |
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1413 headers = { 'Accept' : 'multipart/related; type=application/dicom; transfer-syntax=1.2.840.10008.1.2.4.57' }) |
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1414 self.assertEqual(1, len(a)) |
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1415 self.assertEqual('1.2.840.10008.1.2.4.57', GetTransferSyntax(a[0])) |
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1416 self.assertNotEqual(compressedSize, len(a[0])) |
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1417 self.assertNotEqual(uncompressedSize, len(a[0])) |
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1418 |
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1419 |
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1420 def test_compare_wado_uri_and_rs(self): |
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1421 # https://groups.google.com/d/msg/orthanc-users/mKgr2QAKTCU/R7u4I1LvBAAJ |
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1422 |
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1423 # Image "2020-08-12-Christopher.dcm" corresponds to the result of: |
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1424 # $ gdcmconv --raw 1.2.840.113704.9.1000.16.2.20190613104005642000100010001.dcm 2020-08-12-Christopher.dcm |
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1425 # Image "2020-08-12-Christopher.png" corresponds to "2.png" |
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1426 |
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1427 i = UploadInstance(ORTHANC, '2020-08-12-Christopher.dcm') ['ID'] |
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1428 STUDY = '1.2.840.113704.9.1000.16.0.20190613103939444' |
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1429 SERIES = '1.2.840.113704.9.1000.16.1.2019061310394289000010001' |
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1430 INSTANCE = '1.2.840.113704.9.1000.16.2.20190613104005642000100010001' |
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1431 |
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1432 with open(GetDatabasePath('2020-08-12-Christopher.png'), 'rb') as f: |
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1433 truth = UncompressImage(f.read()) |
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1434 |
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1435 im1 = GetImage(ORTHANC, args.wado + '?requestType=WADO&objectUID=%s&contentType=image/jpg' % INSTANCE) |
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1436 self.assertEqual('JPEG', im1.format) |
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1437 |
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1438 im2 = GetImage(ORTHANC, args.wado + '?requestType=WADO&objectUID=%s&contentType=image/png' % INSTANCE) |
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1439 self.assertEqual('PNG', im2.format) |
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1440 |
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1441 im3 = GetImage(ORTHANC, '/dicom-web/studies/%s/series/%s/instances/%s/frames/1/rendered?window=200,800,linear' % (STUDY, SERIES, INSTANCE)) |
325
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1442 self.assertEqual('JPEG', im3.format) |
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1443 |
434
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1444 im4 = GetImage(ORTHANC, '/dicom-web/studies/%s/series/%s/instances/%s/rendered?window=200,800,linear' % (STUDY, SERIES, INSTANCE), |
325
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1445 headers = { 'Accept' : 'image/png' }) |
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1446 self.assertEqual('PNG', im4.format) |
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1447 |
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1448 im5 = GetImage(ORTHANC, '/instances/%s/rendered' % i, { 'Accept' : 'image/jpeg' }) |
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1449 self.assertEqual('JPEG', im5.format) |
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1450 |
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1451 im6 = GetImage(ORTHANC, '/instances/%s/rendered' % i) |
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1452 self.assertEqual('PNG', im6.format) |
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1453 |
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1454 for im in [ truth, im1, im2, im3, im4, im5, im6 ]: |
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1455 self.assertEqual('L', im.mode) |
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1456 self.assertEqual(512, im.size[0]) |
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1457 self.assertEqual(512, im.size[1]) |
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1458 |
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1459 # The following fails in DICOMweb plugin <= 1.2, as "/rendered" |
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1460 # was redirecting to the "/preview" route of Orthanc |
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1461 # http://effbot.org/zone/pil-comparing-images.htm |
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1462 self.assertLess(ImageChops.difference(im1, im3).getextrema() [1], 10) |
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1463 self.assertLess(ImageChops.difference(im2, im4).getextrema() [1], 2) |
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1464 self.assertLess(ImageChops.difference(im3, im5).getextrema() [1], 10) |
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1465 self.assertLess(ImageChops.difference(im4, im6).getextrema() [1], 2) |
325
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1466 self.assertTrue(ImageChops.difference(im1, im5).getbbox() is None) |
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1467 self.assertTrue(ImageChops.difference(im2, im6).getbbox() is None) |
345 | 1468 |
1469 bbox = ImageChops.difference(im2, truth).getbbox() | |
346 | 1470 if bbox != None: |
1471 # Tolerance of just 1 pixel of difference (needed on Windows) | |
1472 #print(im2.getpixel((238,275))) # => 255 | |
1473 #print(truth.getpixel((238,275))) # => 254 | |
1474 self.assertLessEqual(abs(bbox[2] - bbox[0]), 1) | |
1475 self.assertLessEqual(abs(bbox[3] - bbox[1]), 1) | |
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1476 |
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1477 |
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1478 def test_issue_195(self): |
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1479 # This fails on Orthanc <= 1.9.2 |
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1480 # https://bugs.orthanc-server.com/show_bug.cgi?id=195 |
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1481 a = UploadInstance(ORTHANC, 'Issue195.dcm') ['ID'] |
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1482 b = DoGet(ORTHANC, 'dicom-web/studies/1.2.276.0.7230010.3.1.2.8323329.13188.1620309604.848733/series/1.2.276.0.7230010.3.1.3.8323329.13188.1620309604.848734/instances/1.2.276.0.7230010.3.1.4.8323329.13188.1620309604.848735/metadata', |
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1483 headers = { 'Accept' : 'application/dicom+json' }) |
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1484 |
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1485 self.assertEqual(1, len(b)) |
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1486 self.assertEqual(5, len(b[0])) |
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1487 |
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1488 # The expected result can be found by typing "dcm2json Database/Issue195.dcm" |
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1489 self.assertEqual(2, len(b[0]["00080018"])) |
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1490 self.assertEqual("UI", b[0]["00080018"]["vr"]) |
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1491 self.assertEqual("1.2.276.0.7230010.3.1.4.8323329.13188.1620309604.848735", |
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1492 b[0]["00080018"]["Value"][0]) |
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1493 |
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1494 self.assertEqual(2, len(b[0]["0020000D"])) |
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1495 self.assertEqual("UI", b[0]["0020000D"]["vr"]) |
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1496 self.assertEqual("1.2.276.0.7230010.3.1.2.8323329.13188.1620309604.848733", |
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1497 b[0]["0020000D"]["Value"][0]) |
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1498 |
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1499 self.assertEqual(2, len(b[0]["0020000E"])) |
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1500 self.assertEqual("UI", b[0]["0020000E"]["vr"]) |
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1501 self.assertEqual("1.2.276.0.7230010.3.1.3.8323329.13188.1620309604.848734", |
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1502 b[0]["0020000E"]["Value"][0]) |
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1503 |
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1504 self.assertEqual(1, len(b[0]["00081030"])) # Case of an empty value |
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1505 self.assertEqual("LO", b[0]["00081030"]["vr"]) |
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1506 |
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1507 self.assertEqual(2, len(b[0]["0008103E"])) |
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1508 self.assertEqual("LO", b[0]["0008103E"]["vr"]) |
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1509 self.assertEqual("Hello1", b[0]["0008103E"]["Value"][0]) |
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1510 |
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1511 |
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1512 DoDelete(ORTHANC, 'instances/%s' % a) |
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1513 a = UploadInstance(ORTHANC, 'Issue195-bis.dcm') ['ID'] |
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1514 URI = 'dicom-web/studies/1.2.276.0.7230010.3.1.2.8323329.6792.1625504071.652468/series/1.2.276.0.7230010.3.1.3.8323329.6792.1625504071.652469/instances/1.2.276.0.7230010.3.1.4.8323329.6792.1625504071.652470' |
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1515 b = DoGet(ORTHANC, '%s/metadata' % URI, |
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1516 headers = { 'Accept' : 'application/dicom+json' }) |
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1517 |
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1518 self.assertEqual(1, len(b)) |
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1519 self.assertEqual(5, len(b[0])) |
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1520 |
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1521 # The expected result can be found by typing "dcm2json ../../Database/Issue195-bis.dcm" |
399
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1522 self.assertEqual(2, len(b[0]["00080018"])) |
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1523 self.assertEqual("UI", b[0]["00080018"]["vr"]) |
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1524 self.assertEqual("1.2.276.0.7230010.3.1.4.8323329.6792.1625504071.652470", |
399
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1525 b[0]["00080018"]["Value"][0]) |
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1526 |
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1527 self.assertEqual(2, len(b[0]["0020000D"])) |
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1528 self.assertEqual("UI", b[0]["0020000D"]["vr"]) |
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1529 self.assertEqual("1.2.276.0.7230010.3.1.2.8323329.6792.1625504071.652468", |
399
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1530 b[0]["0020000D"]["Value"][0]) |
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1531 |
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1532 self.assertEqual(2, len(b[0]["0020000E"])) |
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1533 self.assertEqual("UI", b[0]["0020000E"]["vr"]) |
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1534 self.assertEqual("1.2.276.0.7230010.3.1.3.8323329.6792.1625504071.652469", |
399
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1535 b[0]["0020000E"]["Value"][0]) |
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1536 |
434
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1537 self.assertEqual(2, len(b[0]["00084567"])) |
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1538 self.assertEqual("UN", b[0]["00084567"]["vr"]) |
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1539 self.assertEqual('http://%s:%s%s' % (args.server, args.rest, '/%s/bulk/00084567' % URI), |
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diff
changeset
|
1540 b[0]["00084567"]["BulkDataURI"]) |
399
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1541 |
434
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|
1542 c = DoGet(ORTHANC, '%s/bulk/00084567' % URI) |
399
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1543 self.assertTrue('Content-Length: 2\r\n' in c) |
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1544 index = c.find('\r\n\r\n') |
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1545 self.assertEqual(0x42, ord(c[index + 4])) |
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|
1546 self.assertEqual(0x00, ord(c[index + 5])) |
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|
1547 |
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|
1548 # Case of an empty value, fails in Orthanc <= 1.9.2 because of issue #195 |
434
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|
1549 self.assertEqual(1, len(b[0]["00084565"])) |
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|
1550 self.assertEqual("UN", b[0]["00084565"]["vr"]) |
325
b7c2fb8e1b57
DICOMweb: test_compare_wado_uri_and_rs
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diff
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|
1551 |
273
afcd550a9216
test_multiple_mime_accept_wado_rs
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diff
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|
1552 |
434
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diff
changeset
|
1553 |
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|
1554 |
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|
1555 def test_multiframe_windowing(self): |
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1556 # Fixed in DICOMweb 1.7 |
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1557 def GetLinear(x, c, w): |
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1558 # http://dicom.nema.org/MEDICAL/dicom/2019a/output/chtml/part03/sect_C.11.2.html#sect_C.11.2.1.2.1 |
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|
1559 ymin = 0.0 |
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1560 ymax = 255.0 |
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1561 if float(x) <= float(c) - 0.5 - (float(w) - 1.0) / 2.0: |
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1562 return ymin |
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1563 elif float(x) > float(c) - 0.5 + (float(w) - 1.0) / 2.0 : |
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1564 return ymax |
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1565 else: |
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|
1566 return ((float(x) - (float(c) - 0.5)) / (float(w) - 1.0) + 0.5) * (ymax - ymin) + ymin |
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|
1567 |
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|
1568 def GetLinearExact(x, c, w): |
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1569 # http://dicom.nema.org/MEDICAL/dicom/2019a/output/chtml/part03/sect_C.11.2.html#sect_C.11.2.1.3.2 |
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|
1570 ymin = 0.0 |
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1571 ymax = 255.0 |
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1572 if float(x) <= float(c) - float(w) / 2.0: |
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1573 return ymin |
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1574 elif float(x) > float(c) + float(w) / 2.0: |
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1575 return ymax |
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1576 else: |
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1577 return (float(x) - float(c)) / float(w) * (ymax- ymin) + ymin |
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|
1578 |
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|
1579 def GetSigmoid(x, c, w): |
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1580 # http://dicom.nema.org/MEDICAL/dicom/2019a/output/chtml/part03/sect_C.11.2.html#sect_C.11.2.1.3.1 |
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|
1581 ymin = 0.0 |
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1582 ymax = 255.0 |
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1583 return (ymax - ymin) / (1.0 + math.exp(-4 * (float(x) - float(c)) / float(w))) |
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|
1584 |
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|
1585 self.assertAlmostEqual(GetLinear(10, 0, 100), 154.54545454545456) |
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|
1586 self.assertAlmostEqual(GetLinear(-1000, 2048, 4096), 0) |
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|
1587 self.assertAlmostEqual(GetLinear(5096, 2048, 4096), 255) |
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|
1588 self.assertAlmostEqual(GetLinear(333, 2048, 4096), 20.7362637362637) |
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|
1589 self.assertAlmostEqual(GetLinear(16, 127, 256), 17) |
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|
1590 |
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|
1591 self.assertAlmostEqual(GetLinearExact(-1000, 2048, 4096), 0) |
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|
1592 self.assertAlmostEqual(GetLinearExact(5096, 2048, 4096), 255) |
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|
1593 self.assertAlmostEqual(GetLinearExact(150, 127, 256), 22.91015625) |
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|
1594 |
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|
1595 self.assertAlmostEqual(GetSigmoid(150, 127, 256), 150.166728345797) |
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|
1596 |
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|
1597 UploadInstance(ORTHANC, 'MultiframeWindowing.dcm') |
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1598 STUDY = '1.2.840.113619.2.176.2025.1499492.7391.1175285944.390' |
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1599 SERIES = '1.2.840.113619.2.176.2025.1499492.7391.1175285944.394' |
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1600 INSTANCE = '1.2.840.113619.2.176.2025.1499492.7040.1175286242.109' |
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|
1601 |
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|
1602 im = GetImage(ORTHANC, '/dicom-web/studies/%s/series/%s/instances/%s/frames/1/rendered?window=127,256,linear' % (STUDY, SERIES, INSTANCE)) |
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|
1603 self.assertLessEqual(abs(GetLinear(0x00, 127, 256) - im.getpixel((0, 0))), 1) |
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|
1604 self.assertLessEqual(abs(GetLinear(0x10, 127, 256) - im.getpixel((1, 0))), 1) |
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|
1605 self.assertLessEqual(abs(GetLinear(0x20, 127, 256) - im.getpixel((0, 1))), 1.1) |
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|
1606 self.assertLessEqual(abs(GetLinear(0x30, 127, 256) - im.getpixel((1, 1))), 1.1) |
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1607 |
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1608 im = GetImage(ORTHANC, '/dicom-web/studies/%s/series/%s/instances/%s/frames/1/rendered?window=0,256,linear-exact' % (STUDY, SERIES, INSTANCE)) |
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|
1609 self.assertLessEqual(abs(GetLinearExact(0x00, 0, 256) - im.getpixel((0, 0))), 1) |
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|
1610 self.assertLessEqual(abs(GetLinearExact(0x10, 0, 256) - im.getpixel((1, 0))), 1) |
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|
1611 self.assertLessEqual(abs(GetLinearExact(0x20, 0, 256) - im.getpixel((0, 1))), 1.2) |
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|
1612 self.assertLessEqual(abs(GetLinearExact(0x30, 0, 256) - im.getpixel((1, 1))), 1.2) |
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1613 |
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|
1614 im = GetImage(ORTHANC, '/dicom-web/studies/%s/series/%s/instances/%s/frames/1/rendered?window=127,256,sigmoid' % (STUDY, SERIES, INSTANCE)) |
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1615 self.assertLessEqual(abs(GetSigmoid(0x00, 127, 256) - im.getpixel((0, 0))), 3) |
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|
1616 self.assertLessEqual(abs(GetSigmoid(0x10, 127, 256) - im.getpixel((1, 0))), 1) |
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|
1617 self.assertLessEqual(abs(GetSigmoid(0x20, 127, 256) - im.getpixel((0, 1))), 1) |
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|
1618 self.assertLessEqual(abs(GetSigmoid(0x30, 127, 256) - im.getpixel((1, 1))), 1) |
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|
1619 |
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1620 im = GetImage(ORTHANC, '/dicom-web/studies/%s/series/%s/instances/%s/frames/1/rendered?window=16,128,linear' % (STUDY, SERIES, INSTANCE)) |
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1621 self.assertLessEqual(abs(GetLinear(0x00, 16, 128) - im.getpixel((0, 0))), 1) |
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|
1622 self.assertLessEqual(abs(GetLinear(0x10, 16, 128) - im.getpixel((1, 0))), 1) |
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|
1623 self.assertLessEqual(abs(GetLinear(0x20, 16, 128) - im.getpixel((0, 1))), 2) |
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|
1624 self.assertLessEqual(abs(GetLinear(0x30, 16, 128) - im.getpixel((1, 1))), 2) |
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|
1625 |
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|
1626 im = GetImage(ORTHANC, '/dicom-web/studies/%s/series/%s/instances/%s/frames/2/rendered?window=127,256,linear' % (STUDY, SERIES, INSTANCE)) |
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|
1627 ri = 100.0 |
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1628 rs = 1.0 |
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changeset
|
1629 self.assertLessEqual(abs(GetLinear(0x00 * rs + ri, 127, 256) - im.getpixel((0, 0))), 1) |
2c142e070f19
dicomweb: added test_multiframe_windowing
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
399
diff
changeset
|
1630 self.assertLessEqual(abs(GetLinear(0x10 * rs + ri, 127, 256) - im.getpixel((1, 0))), 1) |
2c142e070f19
dicomweb: added test_multiframe_windowing
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
399
diff
changeset
|
1631 self.assertLessEqual(abs(GetLinear(0x20 * rs + ri, 127, 256) - im.getpixel((0, 1))), 1) |
2c142e070f19
dicomweb: added test_multiframe_windowing
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
399
diff
changeset
|
1632 self.assertLessEqual(abs(GetLinear(0x30 * rs + ri, 127, 256) - im.getpixel((1, 1))), 1) |
2c142e070f19
dicomweb: added test_multiframe_windowing
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
399
diff
changeset
|
1633 |
2c142e070f19
dicomweb: added test_multiframe_windowing
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
399
diff
changeset
|
1634 im = GetImage(ORTHANC, '/dicom-web/studies/%s/series/%s/instances/%s/frames/3/rendered?window=127,256,linear' % (STUDY, SERIES, INSTANCE)) |
2c142e070f19
dicomweb: added test_multiframe_windowing
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
399
diff
changeset
|
1635 ri = 0.0 |
2c142e070f19
dicomweb: added test_multiframe_windowing
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
399
diff
changeset
|
1636 rs = 2.0 |
2c142e070f19
dicomweb: added test_multiframe_windowing
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
399
diff
changeset
|
1637 self.assertLessEqual(abs(GetLinear(0x00 * rs + ri, 127, 256) - im.getpixel((0, 0))), 1) |
2c142e070f19
dicomweb: added test_multiframe_windowing
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
399
diff
changeset
|
1638 self.assertLessEqual(abs(GetLinear(0x10 * rs + ri, 127, 256) - im.getpixel((1, 0))), 1.1) |
2c142e070f19
dicomweb: added test_multiframe_windowing
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
399
diff
changeset
|
1639 self.assertLessEqual(abs(GetLinear(0x20 * rs + ri, 127, 256) - im.getpixel((0, 1))), 1) |
2c142e070f19
dicomweb: added test_multiframe_windowing
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
399
diff
changeset
|
1640 self.assertLessEqual(abs(GetLinear(0x30 * rs + ri, 127, 256) - im.getpixel((1, 1))), 1) |
2c142e070f19
dicomweb: added test_multiframe_windowing
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
399
diff
changeset
|
1641 |
2c142e070f19
dicomweb: added test_multiframe_windowing
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
399
diff
changeset
|
1642 im = GetImage(ORTHANC, '/dicom-web/studies/%s/series/%s/instances/%s/frames/4/rendered?window=127,256,linear' % (STUDY, SERIES, INSTANCE)) |
2c142e070f19
dicomweb: added test_multiframe_windowing
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
399
diff
changeset
|
1643 ri = 100.0 |
2c142e070f19
dicomweb: added test_multiframe_windowing
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
399
diff
changeset
|
1644 rs = 2.0 |
2c142e070f19
dicomweb: added test_multiframe_windowing
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
399
diff
changeset
|
1645 self.assertLessEqual(abs(GetLinear(0x00 * rs + ri, 127, 256) - im.getpixel((0, 0))), 1) |
2c142e070f19
dicomweb: added test_multiframe_windowing
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
399
diff
changeset
|
1646 self.assertLessEqual(abs(GetLinear(0x10 * rs + ri, 127, 256) - im.getpixel((1, 0))), 1) |
2c142e070f19
dicomweb: added test_multiframe_windowing
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
399
diff
changeset
|
1647 self.assertLessEqual(abs(GetLinear(0x20 * rs + ri, 127, 256) - im.getpixel((0, 1))), 1) |
2c142e070f19
dicomweb: added test_multiframe_windowing
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
399
diff
changeset
|
1648 self.assertLessEqual(abs(GetLinear(0x30 * rs + ri, 127, 256) - im.getpixel((1, 1))), 1) |
2c142e070f19
dicomweb: added test_multiframe_windowing
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
399
diff
changeset
|
1649 |
2c142e070f19
dicomweb: added test_multiframe_windowing
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
399
diff
changeset
|
1650 |
32
682c4e2a1162
integration tests for wado
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
1651 try: |
682c4e2a1162
integration tests for wado
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
1652 print('\nStarting the tests...') |
682c4e2a1162
integration tests for wado
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
1653 unittest.main(argv = [ sys.argv[0] ] + args.options) |
682c4e2a1162
integration tests for wado
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
1654 |
682c4e2a1162
integration tests for wado
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
1655 finally: |
682c4e2a1162
integration tests for wado
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
1656 print('\nDone') |