Mercurial > hg > orthanc-tests
annotate Plugins/Worklists/Run.py @ 100:2af6c0fb850d
shared copyright with osimis
author | Sebastien Jodogne <s.jodogne@gmail.com> |
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date | Wed, 04 Jan 2017 16:40:03 +0100 |
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1 #!/usr/bin/python |
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2 # -*- coding: utf-8 -*- |
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3 |
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4 |
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5 # Orthanc - A Lightweight, RESTful DICOM Store |
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6 # Copyright (C) 2012-2016 Sebastien Jodogne, Medical Physics |
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7 # Department, University Hospital of Liege, Belgium |
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8 # Copyright (C) 2017 Osimis, Belgium |
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9 # |
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10 # This program is free software: you can redistribute it and/or |
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11 # modify it under the terms of the GNU General Public License as |
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12 # published by the Free Software Foundation, either version 3 of the |
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13 # License, or (at your option) any later version. |
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14 # |
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15 # This program is distributed in the hope that it will be useful, but |
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16 # WITHOUT ANY WARRANTY; without even the implied warranty of |
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17 # MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU |
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18 # General Public License for more details. |
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19 # |
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20 # You should have received a copy of the GNU General Public License |
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21 # along with this program. If not, see <http://www.gnu.org/licenses/>. |
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22 |
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23 |
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24 import argparse |
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25 import os |
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26 import pprint |
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27 import re |
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28 import subprocess |
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29 import sys |
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30 import tempfile |
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31 import unittest |
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32 |
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33 sys.path.append(os.path.join(os.path.dirname(__file__), '..', '..', 'Tests')) |
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34 from Toolbox import * |
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35 |
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36 |
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37 ## |
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38 ## Parse the command-line arguments |
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39 ## |
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40 |
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41 parser = argparse.ArgumentParser(description = 'Run the integration tests for the DICOM worklist plugin.') |
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42 |
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43 parser.add_argument('--server', |
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44 default = 'localhost', |
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45 help = 'Address of the Orthanc server to test') |
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46 parser.add_argument('--rest', |
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47 type = int, |
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48 default = 8042, |
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49 help = 'Port to the REST API') |
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50 parser.add_argument('--username', |
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51 default = 'alice', |
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52 help = 'Username to the REST API') |
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53 parser.add_argument('--password', |
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54 default = 'orthanctest', |
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55 help = 'Password to the REST API') |
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56 parser.add_argument('--dicom', |
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57 type = int, |
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58 default = 4242, |
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59 help = 'DICOM port of the Orthanc instance to test') |
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60 parser.add_argument('options', metavar = 'N', nargs = '*', |
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61 help='Arguments to Python unittest') |
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62 |
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63 args = parser.parse_args() |
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64 |
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65 |
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66 |
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67 ORTHANC = DefineOrthanc(server = args.server, |
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68 username = args.username, |
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69 password = args.password, |
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70 restPort = args.rest) |
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71 |
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72 |
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73 |
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74 ## |
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75 ## Toolbox |
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76 ## |
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77 |
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78 DATABASE = os.path.abspath(os.path.normpath(os.path.join(os.path.dirname(__file__), '..', '..', 'Database', 'Worklists'))) |
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79 WORKING = os.path.join(DATABASE, 'Working') |
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80 |
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81 try: |
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82 os.mkdir(WORKING) |
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83 except Exception as e: |
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84 # The working folder has already been created |
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85 pass |
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86 |
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87 def ClearDatabase(): |
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88 for f in os.listdir(WORKING): |
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89 if f != 'lockfile': |
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90 os.remove(os.path.join(WORKING, f)) |
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91 |
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92 def AddToDatabase(source): |
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93 subprocess.check_call([ 'dump2dcm', '--write-xfer-little', |
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94 os.path.join(DATABASE, source), |
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95 os.path.join(WORKING, os.path.basename(source) + '.wl') ]) |
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96 |
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97 def RunQuery(source, ignoreTags): |
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98 with tempfile.NamedTemporaryFile() as f: |
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99 subprocess.check_call([ 'dump2dcm', '--write-xfer-little', |
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100 os.path.join(DATABASE, source), f.name ]) |
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101 |
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102 a = subprocess.check_output([ 'findscu', '-v', '--call', 'ORTHANC', '-aet', 'ORTHANCTEST', |
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103 args.server, str(args.dicom), f.name ], |
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104 stderr = subprocess.STDOUT).splitlines() |
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105 |
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106 if len(filter(lambda x: x.startswith('E:'), a)) > 0: |
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107 raise Exception('Error while running findscu') |
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108 |
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109 b = map(lambda x: x[3:], filter(lambda x: x.startswith('W: ---') or x.startswith('W: ('), a)) |
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110 b = map(lambda x: re.sub(r'\s*#.*', '', x), b) |
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111 |
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112 answers = [] |
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113 current = [] |
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114 |
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115 for l in b: |
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116 if l[0] == '-': |
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117 # This is a separator between DICOM datasets |
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118 if len(current) > 0: |
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119 answers.append(current) |
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120 current = [] |
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121 |
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122 else: |
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123 tag = l[1:10].lower() |
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124 if not tag in ignoreTags: |
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125 current.append(l) |
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126 |
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127 if len(current) > 0: |
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128 answers.append(current) |
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129 |
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130 return answers |
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131 |
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132 def CompareAnswers(expected, actual): |
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133 if len(expected) != len(actual): |
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134 return False |
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135 |
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136 if len(expected) == 0: |
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137 return True |
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138 |
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139 for i in range(len(expected)): |
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140 for j in range(len(actual)): |
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141 if expected[i] == actual[j]: |
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142 return True |
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143 |
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144 return False |
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145 |
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146 |
94
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147 def ParseTopLevelTags(answer): |
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148 tags = {} |
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149 for line in answer: |
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150 m = re.match(r'^\(([0-9a-f]{4},[0-9a-f]{4})\)\s*..\s*\[([^]]*)\]', line) |
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151 tags[m.group(1)] = m.group(2).strip() |
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152 |
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153 return tags |
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154 |
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155 |
90
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156 ## |
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157 ## The tests |
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158 ## |
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159 |
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160 class Orthanc(unittest.TestCase): |
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161 def setUp(self): |
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162 if (sys.version_info >= (3, 0)): |
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163 # Remove annoying warnings about unclosed socket in Python 3 |
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164 import warnings |
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165 warnings.simplefilter("ignore", ResourceWarning) |
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166 |
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167 ClearDatabase() |
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168 |
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169 |
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170 def test_single(self): |
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171 for db in range(1, 11): |
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172 ClearDatabase() |
91 | 173 AddToDatabase('Dcmtk/Database/wklist%d.dump' % db) |
90
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174 |
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175 for query in range(0, 13): |
91 | 176 answers = RunQuery('Dcmtk/Queries/wlistqry%d.dump' % query, [ |
90
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177 '0008,0005', |
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178 '0040,0004', |
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179 '0040,0005', |
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180 '0040,0020', |
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181 ]) |
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182 |
91 | 183 with open(os.path.join('%s/Dcmtk/Expected/single-%d-%d.json' % (DATABASE, db, query)), 'r') as f: |
90
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184 expected = json.loads(f.read()) |
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185 self.assertTrue(CompareAnswers(expected, answers)) |
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186 |
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187 |
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188 def test_all(self): |
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189 ClearDatabase() |
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190 |
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191 for db in range(1, 11): |
91 | 192 AddToDatabase('Dcmtk/Database/wklist%d.dump' % db) |
90
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193 |
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194 for query in range(0, 13): |
91 | 195 answers = RunQuery('Dcmtk/Queries/wlistqry%d.dump' % query, [ |
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196 '0008,0005', |
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197 '0040,0004', |
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198 '0040,0005', |
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199 '0040,0020', |
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200 ]) |
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201 |
91 | 202 with open(os.path.join('%s/Dcmtk/Expected/all-%d.json' % (DATABASE, query)), 'r') as f: |
90
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203 expected = json.loads(f.read()) |
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204 self.assertTrue(CompareAnswers(expected, answers)) |
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205 |
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206 |
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207 def test_vet(self): |
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208 AddToDatabase('Sequences/STATION_AET/orig.7705.dump') |
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209 AddToDatabase('Sequences/STATION_AET/orig.7814.dump') |
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210 AddToDatabase('Sequences/STATION_AET/orig.7814.without.seq.dump') |
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211 |
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212 self.assertEqual(2, len(RunQuery('Sequences/Queries/7814.without.length.dump', []))) |
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213 self.assertEqual(2, len(RunQuery('Sequences/Queries/7814.without.seq.dump', []))) |
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214 self.assertEqual(2, len(RunQuery('Sequences/Queries/orig.7814.dump', []))) |
97 | 215 |
216 | |
98 | 217 @unittest.skip("This test requires to enable option 'FilterIssuerAet' in the sample worklist plugin") |
218 def test_filter_issuer_aet(self): | |
97 | 219 AddToDatabase('Sequences/STATION_AET/orig.7814.dump') |
98 | 220 AddToDatabase('Sequences/STATION_AET/orig.7814.other.station.dump') |
97 | 221 |
98 | 222 self.assertEqual(1, len(RunQuery('Sequences/Queries/7814.without.station.aet.dump', []))) |
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223 |
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224 |
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225 def test_encodings(self): |
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226 # Check out ../../Database/Worklists/Encodings/database.dump |
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227 TEST = u'Test-éüäöòДΘĝדصķћ๛ネİ' |
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228 ENCODINGS = { |
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229 'Arabic' : [ 'ISO_IR 127' ], |
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230 'Ascii' : [ 'ISO_IR 6' ], # More accurately, ISO 646 |
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231 'Cyrillic' : [ 'ISO_IR 144' ], |
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232 'Greek' : [ 'ISO_IR 126' ], |
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233 'Hebrew' : [ 'ISO_IR 138' ], |
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234 'Japanese' : [ 'ISO_IR 13', 'shift-jis' ], |
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235 'Latin1' : [ 'ISO_IR 100' ], |
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236 'Latin2' : [ 'ISO_IR 101' ], |
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237 'Latin3' : [ 'ISO_IR 109' ], |
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238 'Latin4' : [ 'ISO_IR 110' ], |
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239 'Latin5' : [ 'ISO_IR 148' ], |
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240 'Thai' : [ 'ISO_IR 166', 'tis-620' ], |
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241 'Utf8' : [ 'ISO_IR 192' ], |
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242 } |
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243 |
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244 AddToDatabase('Encodings/database.dump') |
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245 |
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246 for name, encoding in ENCODINGS.iteritems(): |
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247 self.assertEqual(name, DoPut(ORTHANC, '/tools/default-encoding', name)) |
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248 result = RunQuery('Encodings/query.dump', []) |
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249 |
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250 self.assertEqual(1, len(result)) |
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251 self.assertEqual(2, len(result[0])) |
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252 tags = ParseTopLevelTags(result[0]) |
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253 |
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254 if len(encoding) == 1: |
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255 encoded = TEST.encode(name, 'ignore') |
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256 else: |
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257 encoded = TEST.encode(encoding[1], 'ignore') |
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258 |
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259 self.assertEqual(encoding[0], tags['0008,0005']) |
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260 self.assertEqual(encoded, tags['0010,0010']) |
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261 |
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262 |
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263 |
90
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264 |
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265 try: |
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266 print('\nStarting the tests...') |
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267 unittest.main(argv = [ sys.argv[0] ] + args.options) |
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268 |
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269 finally: |
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270 print('\nDone') |